HHsearch alignment for GI: 254780401 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=94.10 E-value=0.54 Score=27.71 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=102.7
Q ss_pred CCCCCCH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH
Q ss_conf 7888748-9999999985247315987604578777755871456788770421233220576----3465201225664
Q gi|254780401|r 55 GGTGKTP-TALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM 129 (338)
Q Consensus 55 GGtGKTP-~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~ 129 (338)
T Consensus 55 TGSGKTlAfllPil~~ll~~~~~-----~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~ 129 (423)
T PRK04837 55 TGTGKTMAFLTATFHHLLSHPAP-----EGRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLK 129 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
T ss_conf 98749999999999999837453-----3455678618999388999999999999974325845999989988799999
Q ss_pred HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH------HHHHHCCC-CH
Q ss_conf 10245747997183-----2-234412306999961843356655376136521002556651------45442044-12
Q gi|254780401|r 130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV------DAILYVGN-KK 196 (338)
Q Consensus 130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra------d~vi~~~~-~~ 196 (338)
T Consensus 130 ~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD-----~lld~gF~~~-i~~i~~~~p~~~~r~~~lfSATl~~ 203 (423)
T PRK04837 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-----RMFDLGFIKD-IRWLFRRMPPANQRLNMLFSATLSY 203 (423)
T ss_pred HHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHH-----HHHHCCCHHH-HHHHHHHCCCCHHEEEEEEECCCCH
T ss_conf 871799989989189999986422123664289963446-----5430263999-9999996896221089997036888
Q ss_pred ---HHHHHHCCCCH------------------HHHHH--HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCC
Q ss_conf ---45776313501------------------11222--201----32111686389874-1553578999887401000
Q gi|254780401|r 197 ---NVISSIKNKSV------------------YFAKL--KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALI 248 (338)
Q Consensus 197 ---~~~~~~~~~~i------------------~~~~~--~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i 248 (338)
T Consensus 204 ~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~ 283 (423)
T PRK04837 204 RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRV 283 (423)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999778987999657765665426999991727799999999984088746886162888999999997659817
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 01221433234898999999997564798-7998546
Q gi|254780401|r 249 EQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 249 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
T Consensus 284 ~~-----lhg~~~q~~R~~~l~~F~~g~~~vLVaTDv 315 (423)
T PRK04837 284 GL-----LTGDVPQKKRLRILEQFTRGDLDILVATDV 315 (423)
T ss_pred EE-----ECCCCCHHHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 87-----225457999999999997699989987004