HHsearch alignment for GI: 254780401 and conserved domain: PRK10917
>PRK10917 ATP-dependent DNA helicase RecG; Provisional.
Probab=93.14 E-value=0.86 Score=26.28 Aligned_cols=206 Identities=16% Similarity=0.242 Sum_probs=105.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-CCC--CC----CCCHHHHHH
Q ss_conf 88874899999999852473159876045787777558714567887704212332205-763--46----520122566
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-AVT--IV----TSDRKIGVQ 128 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-~pv--~V----~~~R~~~~~ 128 (338)
T Consensus 288 GsGKT~va~~a~~~~~~~g~q~a~ma---------PTeiLa~Qh-~~~~~~---~~~~~~i~v~lltg~~~~~~~~~~~~ 354 (677)
T PRK10917 288 GSGKTVVAALAALAAIEAGYQAALMA---------PTEILAEQH-YRNLKK---WLEPLGIRVALLTGSLKGKERREILE 354 (677)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEC---------CCHHHHHHH-HHHHHH---HHHHCCCEEEEEECCCHHHHHHHHHH
T ss_conf 78889999999999998199489987---------679999999-999998---77634988998407741778999999
Q ss_pred HHCCCCCCEEEECCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH--HH-------
Q ss_conf 4102457479971832-2344123069999618433566553761365210025566514544204412--45-------
Q gi|254780401|r 129 MLLQEGVDIIIMDDGF-HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK--NV------- 198 (338)
Q Consensus 129 ~~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~--~~------- 198 (338)
T Consensus 355 ~~~~g~~~i~iGTHal~~~~v~f~~LglvviDEQHrFGV~Q-------R~~l~~k~~~~~~L~mtATPIPRtla~~~~g~ 427 (677)
T PRK10917 355 ALASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVHQ-------RLALREKGENPHVLVMTATPIPRTLAMTAYGD 427 (677)
T ss_pred HHHCCCCCEEEEHHHHHHCCCCCCCCCEEEECHHHHHHHHH-------HHHHHHCCCCCEEEEEECCCCHHHHHHHHHCC
T ss_conf 98579977897307877355644666569953057763999-------99998439997299983688438899987357
Q ss_pred -----HHHHC--CCCHHHHHHHHC--------CCCCC-CCCEEEEEEC-CCCHHHHH-HHHHHHCCCCCCCCCCCC----
Q ss_conf -----77631--350111222201--------32111-6863898741-55357899-988740100001221433----
Q gi|254780401|r 199 -----ISSIK--NKSVYFAKLKPR--------LTFDL-SGKKVLAFSG-IADTEKFF-TTVRQLGALIEQCYSFGD---- 256 (338)
Q Consensus 199 -----~~~~~--~~~i~~~~~~~~--------~~~~l-~~k~v~afsG-Ia~P~~F~-~~L~~~g~~i~~~~~fpD---- 256 (338)
T Consensus 428 ~d~s~i~~~P~~r~~i~T~~~~~~~~~~~~~~i~~~~~~g~q~y~v~p~ieese~~~~~~~~~~-~~~l~-~~~~~~~v~ 505 (677)
T PRK10917 428 LDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEET-YEELQ-KALPELRVG 505 (677)
T ss_pred CCEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHH-HHHHH-HHCCCCEEE
T ss_conf 6666667799999872699976256899999999999759928999413112332017779999-99998-448997599
Q ss_pred --CCCCCHHHHHHHHHHHHHCCC-EEEECH
Q ss_conf --234898999999997564798-799854
Q gi|254780401|r 257 --HAHLSDKKIAYLLDQAQQKGL-ILVTTA 283 (338)
Q Consensus 257 --Hh~ys~~dl~~i~~~a~~~~~-~iiTTE 283 (338)
T Consensus 506 ~~hG~m~~~ek~~~m~~F~~g~~~iLvsTt 535 (677)
T PRK10917 506 LLHGRMKPAEKDAVMAAFKAGEIDILVATT 535 (677)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 830789878999999999839999999898