HHsearch alignment for GI: 254780401 and conserved domain: PRK11889

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=91.80  E-value=0.34  Score=29.13  Aligned_cols=83  Identities=22%  Similarity=0.183  Sum_probs=43.9

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCC
Q ss_conf             8899823000788874899999999852473159876045787777558714567887704212332-20--57634652
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTS  121 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~  121 (338)
T Consensus       240 ~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITt----------------DTYRIGAVEQLKTYAeIMgVPV~VV~  303 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT----------------DHSRIGTVQQLQDYVKTIGFEVIAVR  303 (436)
T ss_pred             HCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEC----------------CCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             17179998999988899999999998616980899980----------------66347699999999998499439968


Q ss_pred             CHHHHHHHH---CC-CCCCEEEECCC
Q ss_conf             012256641---02-45747997183
Q gi|254780401|r  122 DRKIGVQML---LQ-EGVDIIIMDDG  143 (338)
Q Consensus       122 ~R~~~~~~~---~~-~~~diiIlDDG  143 (338)
T Consensus       304 dp~eL~~AL~~lkdka~~DLILIDTA  329 (436)
T PRK11889        304 DEAAMTRALTYFKEEARVDYILIDTA  329 (436)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             88999999998763368888999298