HHsearch alignment for GI: 254780401 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=91.80 E-value=0.34 Score=29.13 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=43.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCC
Q ss_conf 8899823000788874899999999852473159876045787777558714567887704212332-20--57634652
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTS 121 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~ 121 (338)
T Consensus 240 ~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITt----------------DTYRIGAVEQLKTYAeIMgVPV~VV~ 303 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT----------------DHSRIGTVQQLQDYVKTIGFEVIAVR 303 (436)
T ss_pred HCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEC----------------CCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 17179998999988899999999998616980899980----------------66347699999999998499439968
Q ss_pred CHHHHHHHH---CC-CCCCEEEECCC
Q ss_conf 012256641---02-45747997183
Q gi|254780401|r 122 DRKIGVQML---LQ-EGVDIIIMDDG 143 (338)
Q Consensus 122 ~R~~~~~~~---~~-~~~diiIlDDG 143 (338)
T Consensus 304 dp~eL~~AL~~lkdka~~DLILIDTA 329 (436)
T PRK11889 304 DEAAMTRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 88999999998763368888999298