HHsearch alignment for GI: 254780401 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.77 E-value=0.017 Score=38.41 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=44.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCCHHH---HH
Q ss_conf 078887489999999985247315987604578777755871456788770421233-220--576346520122---56
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSDRKI---GV 127 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~R~~---~~ 127 (338)
T Consensus 214 vnGvGKTTTiAKLA~~l~~~gkkV~LVA----------------aDTFRaAAiEQLk~~g~rlgVpV~~~~dpa~l~~av 277 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFIT----------------TDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV 277 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE----------------CCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
T ss_conf 9989789999999999997799179997----------------066778899999999999796499818889999999
Q ss_pred HHHC-CCCCCEEEECCC
Q ss_conf 6410-245747997183
Q gi|254780401|r 128 QMLL-QEGVDIIIMDDG 143 (338)
Q Consensus 128 ~~~~-~~~~diiIlDDG 143 (338)
T Consensus 278 ~~~a~~~~~DvVIIDTA 294 (407)
T PRK12726 278 QYMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHHHCCCCCEEEEECC
T ss_conf 99986289998999699