HHsearch alignment for GI: 254780401 and conserved domain: PRK12726

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.77  E-value=0.017  Score=38.41  Aligned_cols=74  Identities=24%  Similarity=0.302  Sum_probs=44.3

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCCHHH---HH
Q ss_conf             078887489999999985247315987604578777755871456788770421233-220--576346520122---56
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSDRKI---GV  127 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~R~~---~~  127 (338)
T Consensus       214 vnGvGKTTTiAKLA~~l~~~gkkV~LVA----------------aDTFRaAAiEQLk~~g~rlgVpV~~~~dpa~l~~av  277 (407)
T PRK12726        214 QTGVGKTTTLVKLGWQLLKQNRTVGFIT----------------TDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV  277 (407)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEE----------------CCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
T ss_conf             9989789999999999997799179997----------------066778899999999999796499818889999999


Q ss_pred             HHHC-CCCCCEEEECCC
Q ss_conf             6410-245747997183
Q gi|254780401|r  128 QMLL-QEGVDIIIMDDG  143 (338)
Q Consensus       128 ~~~~-~~~~diiIlDDG  143 (338)
T Consensus       278 ~~~a~~~~~DvVIIDTA  294 (407)
T PRK12726        278 QYMTYVNCVDHILIDTV  294 (407)
T ss_pred             HHHHHCCCCCEEEEECC
T ss_conf             99986289998999699