HHsearch alignment for GI: 254780401 and conserved domain: TIGR00682
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability . This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). ; GO: 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process.
Probab=100.00 E-value=0 Score=402.10 Aligned_cols=306 Identities=33% Similarity=0.511 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCC-EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC---CC
Q ss_conf 9999999999999999999740464-338898-899823000788874899999999852473159876045787---77
Q gi|254780401|r 15 YSFFLYPISWIYSFISSKLMKRGQR-LHAPIP-VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK---SR 89 (338)
Q Consensus 15 ~~~lL~Pls~iy~~~~~~~~~~~~~-~~~~~p-VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~---~~ 89 (338)
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vGn~~~GG~Gktp~v~wl~~~l~~~g~~~~~~~~gy~~~~~~~~ 80 (342)
T TIGR00682 1 LSWLYGLISGVFRFLYDLGLKLAWRTPYAPVPVVISVGNLSVGGTGKTPVVLWLAELLKDRGLRVGVLSRGYGSKSSKSK 80 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE
T ss_conf 81368899999998888643110367763541367623244257875148787899998569818998535455334512
Q ss_pred CCEEEECCCCCHHHHCCHHHHHHHCC---CCCCCCCHHHHHHHHCC-C-CCCEEEECCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 75587145678877042123322057---63465201225664102-4-5747997183223441230699996184335
Q gi|254780401|r 90 ISFRVDLEKHSAYDVGDEPLLLARRA---VTIVTSDRKIGVQMLLQ-E-GVDIIIMDDGFHSADLQADFSLIVVNSHRGL 164 (338)
Q Consensus 90 ~~~~v~~~~~~~~~vGDEp~lla~~~---pv~V~~~R~~~~~~~~~-~-~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~ 164 (338)
T Consensus 81 ~~~~~~~~~~~~~~~Gdep~l~~~~~p~~~v~~~~~~~~~~~~~~~~~p~~~~~~~ddg~~~~~l~~d~~i~~~~~~~~~ 160 (342)
T TIGR00682 81 KYTLVGSKGHTASEVGDEPLLLAKYLPDGPVVASKDRKDAILLALEALPDPDVLILDDGLQHRKLHKDLEIVVVDGQDPF 160 (342)
T ss_pred EEEEEECCCCCHHHCCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCEEEEEEECCCCC
T ss_conf 22232024553212377531200006874168601145678899850788757984064000021134148886153223
Q ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHH-----HHHCCCCHHHHH----------HHHCCCCCCCCCEEEEEE
Q ss_conf 66553761365210025566514544204412457-----763135011122----------220132111686389874
Q gi|254780401|r 165 GNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVI-----SSIKNKSVYFAK----------LKPRLTFDLSGKKVLAFS 229 (338)
Q Consensus 165 gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~-----~~~~~~~i~~~~----------~~~~~~~~l~~k~v~afs 229 (338)
T Consensus 161 g~~~~~P~G~lr~~p~-~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 239 (342)
T TIGR00682 161 GNGFLLPAGPLREFPK-RLKSADALIVNGGGNESGQTELDRLDIPPPIFLLPGIAKLVNLSTGERVPLDKLKELGVGAFS 239 (342)
T ss_pred CCCCCCCCCCCCCCHH-HHHHHHEEEEECCCCCCCHHHHHHHCCCCCEEECCHHHHEEECCCCCCCCHHHHCCCCEEEEE
T ss_conf 6730044664200146-541010013434677520123322025654022110211000024433544564166358996
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEE
Q ss_conf 1553578999887401000012214332348989999-999975647987998546634382333441112205178876
Q gi|254780401|r 230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEV 308 (338)
Q Consensus 230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~-~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i 308 (338)
T Consensus 240 G~G~p~~f~~~l~~~g~~~~~~~~~pdh~~~~~~~~~~~~~~~~~~~g~~~~~t~kd~~k~~~~~~~------~~~~~p~ 313 (342)
T TIGR00682 240 GLGNPQRFFATLKNLGIHVLGTYLLPDHYGITKQELEEFCLSLLLEQGQGLLTTEKDAVKLQALAEE------IWWYLPV 313 (342)
T ss_pred ECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCC------EEEECCH
T ss_conf 1588678999998717730012313202356788766788888875486366323133330110111------1331232
Q ss_pred EEEECCHH------HHHHHHHHHHH
Q ss_conf 98957878------99999999999
Q gi|254780401|r 309 DIVFENPD------DLTNLVEMTVV 327 (338)
Q Consensus 309 ~~~~~~~~------~l~~~l~~~i~ 327 (338)
T Consensus 314 ~~~~~~~~~~~n~~~~~~~~~~~~~ 338 (342)
T TIGR00682 314 DLEREEPEKRCNEPDFWALLDKIFK 338 (342)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 3554101232052478999999999