HHsearch alignment for GI: 254780401 and conserved domain: TIGR01420

>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.39  E-value=0.065  Score=34.24  Aligned_cols=97  Identities=15%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             88874899999999852473159876045787777558714567887704212332205763465201225664102457
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGV  135 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~~~  135 (338)
T Consensus       137 GSGKSTTlAsmIDyIN~-~~~~HIiT------IEDPIEyvh~--------~~~sli~QREvG~DT~sF~~ALraALReDP  201 (350)
T TIGR01420       137 GSGKSTTLASMIDYINK-NKAGHIIT------IEDPIEYVHK--------NKRSLINQREVGLDTLSFANALRAALREDP  201 (350)
T ss_pred             CCCHHHHHHHHHHHHHC-CCCCCCEE------EECCEEEEEC--------CCEEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             98678999999978740-38888256------3177314104--------770245436246754579999768410289


Q ss_pred             CEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH---HHHHHCCCCHH
Q ss_conf             479971832234412306999961843356655376136521002556651---45442044124
Q gi|254780401|r  136 DIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV---DAILYVGNKKN  197 (338)
Q Consensus       136 diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra---d~vi~~~~~~~  197 (338)
T Consensus       202 DvILiGE-~------RD-----------------------~ET~~~AL~AAETGHLV~gTLHTns  236 (350)
T TIGR01420       202 DVILIGE-M------RD-----------------------LETVELALTAAETGHLVFGTLHTNS  236 (350)
T ss_pred             CEEEEEC-C------CC-----------------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             8899825-5------62-----------------------7899999987421315676666423