HHsearch alignment for GI: 254780401 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.36 E-value=0.031 Score=36.56 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
T Consensus 9 tGvGKTTTiaKLA~~~~~~~~kV~lit 35 (173)
T cd03115 9 QGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999889999999999997699289997