HHsearch alignment for GI: 254780401 and conserved domain: cd03115

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.36  E-value=0.031  Score=36.56  Aligned_cols=27  Identities=33%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
T Consensus         9 tGvGKTTTiaKLA~~~~~~~~kV~lit   35 (173)
T cd03115           9 QGVGKTTTAAKLALYLKKKGKKVLLVA   35 (173)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             999889999999999997699289997