Query gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 338
No_of_seqs 164 out of 1985
Neff 6.7
Searched_HMMs 39220
Date Sun May 29 18:10:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780401.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00652 lpxK tetraacyldisacch 100.0 0 0 701.3 26.8 313 3-327 4-331 (334)
2 pfam02606 LpxK Tetraacyldisacc 100.0 0 0 668.7 24.0 301 15-326 1-317 (318)
3 PRK00313 lpxK tetraacyldisacch 100.0 0 0 664.7 24.8 306 9-330 11-330 (332)
4 COG1663 LpxK Tetraacyldisaccha 100.0 0 0 646.5 22.3 315 4-324 5-331 (336)
5 PRK01906 tetraacyldisaccharide 100.0 0 0 639.4 24.7 298 7-326 15-333 (339)
6 TIGR00682 lpxK tetraacyldisacc 100.0 0 0 402.1 19.1 306 15-327 1-338 (342)
7 COG2403 Predicted GTPase [Gene 98.6 7.1E-07 1.8E-11 69.5 9.6 235 41-290 123-389 (449)
8 PRK00771 signal recognition pa 96.8 0.02 5.2E-07 37.8 10.0 202 46-275 100-336 (433)
9 COG0541 Ffh Signal recognition 96.8 0.012 3E-07 39.6 8.4 178 42-244 99-309 (451)
10 PRK10751 molybdopterin-guanine 96.8 0.0076 1.9E-07 40.9 7.3 63 44-113 2-67 (170)
11 pfam09140 MipZ ATPase MipZ. Mi 96.7 0.0067 1.7E-07 41.2 6.9 36 45-81 1-36 (261)
12 TIGR03453 partition_RepA plasm 96.6 0.0025 6.3E-08 44.3 4.0 40 41-81 101-140 (387)
13 KOG0780 consensus 96.6 0.011 2.8E-07 39.7 6.9 194 46-267 104-334 (483)
14 PRK13869 plasmid-partitioning 96.5 0.0028 7.3E-08 43.9 3.9 38 43-81 120-157 (405)
15 PHA02518 ParA-like protein; Pr 96.5 0.0094 2.4E-07 40.2 6.2 36 45-81 1-36 (211)
16 PRK13849 putative crown gall t 96.5 0.0093 2.4E-07 40.2 6.1 36 45-81 2-37 (231)
17 pfam07015 VirC1 VirC1 protein. 96.3 0.013 3.3E-07 39.2 6.2 36 45-81 2-37 (231)
18 TIGR01425 SRP54_euk signal rec 96.3 0.0086 2.2E-07 40.5 5.3 190 45-266 122-356 (453)
19 PRK10416 cell division protein 96.3 0.011 2.8E-07 39.7 5.7 79 46-143 298-386 (499)
20 cd03785 GT1_MurG MurG is an N- 96.2 0.011 2.8E-07 39.7 5.4 34 52-85 4-38 (350)
21 PRK13705 plasmid-partitioning 96.2 0.014 3.5E-07 39.0 5.5 40 41-81 103-142 (388)
22 PRK10867 signal recognition pa 96.1 0.016 4E-07 38.6 5.8 204 46-276 103-345 (453)
23 pfam00448 SRP54 SRP54-type pro 96.1 0.012 3E-07 39.5 5.0 73 55-143 10-92 (196)
24 PRK12726 flagellar biosynthesi 95.8 0.017 4.3E-07 38.4 4.6 74 54-143 214-294 (407)
25 PHA02519 plasmid partition pro 95.8 0.026 6.6E-07 37.1 5.5 38 43-81 105-142 (387)
26 PRK08116 hypothetical protein; 95.6 0.047 1.2E-06 35.2 6.2 38 41-81 106-143 (262)
27 TIGR00959 ffh signal recogniti 95.5 0.029 7.3E-07 36.8 5.1 209 40-276 99-351 (439)
28 PRK06731 flhF flagellar biosyn 95.4 0.033 8.5E-07 36.3 4.9 79 46-143 78-163 (270)
29 cd03115 SRP The signal recogni 95.4 0.031 7.8E-07 36.6 4.7 27 55-81 9-35 (173)
30 TIGR02881 spore_V_K stage V sp 95.3 0.028 7.1E-07 36.8 4.4 56 22-84 18-76 (261)
31 COG0552 FtsY Signal recognitio 95.1 0.055 1.4E-06 34.8 5.3 74 54-143 147-230 (340)
32 PRK10590 ATP-dependent RNA hel 95.0 0.37 9.4E-06 28.9 9.3 183 91-284 78-304 (457)
33 TIGR00176 mobB molybdopterin-g 94.8 0.025 6.3E-07 37.2 2.8 98 55-157 8-117 (165)
34 cd02042 ParA ParA and ParB of 94.6 0.04 1E-06 35.8 3.5 35 46-81 1-35 (104)
35 cd00550 ArsA_ATPase Oxyanion-t 94.5 0.034 8.8E-07 36.2 3.1 28 55-82 9-36 (254)
36 pfam06564 YhjQ YhjQ protein. T 94.5 0.049 1.2E-06 35.1 3.8 36 45-81 2-37 (244)
37 TIGR03371 cellulose_yhjQ cellu 94.4 0.051 1.3E-06 35.0 3.8 36 45-81 2-37 (246)
38 TIGR01420 pilT_fam twitching m 94.4 0.065 1.7E-06 34.2 4.3 97 56-197 137-236 (350)
39 KOG0342 consensus 94.2 0.57 1.4E-05 27.6 10.6 222 54-310 127-407 (543)
40 PRK12723 flagellar biosynthesi 94.2 0.079 2E-06 33.6 4.4 73 55-143 183-263 (388)
41 pfam02492 cobW CobW/HypB/UreG, 94.2 0.17 4.2E-06 31.3 6.0 125 55-196 9-149 (174)
42 PRK07952 DNA replication prote 94.2 0.056 1.4E-06 34.7 3.6 34 45-81 98-131 (242)
43 PRK04837 ATP-dependent RNA hel 94.1 0.54 1.4E-05 27.7 8.5 214 55-284 55-315 (423)
44 pfam01656 CbiA CobQ/CobB/MinD/ 94.0 0.04 1E-06 35.8 2.6 28 54-81 7-34 (212)
45 PRK04537 ATP-dependent RNA hel 94.0 0.32 8.3E-06 29.3 7.2 215 55-284 55-316 (574)
46 COG1192 Soj ATPases involved i 94.0 0.071 1.8E-06 34.0 3.7 36 45-81 3-39 (259)
47 cd02035 ArsA ArsA ATPase funct 93.9 0.053 1.4E-06 34.9 2.9 29 54-82 7-35 (217)
48 PRK12724 flagellar biosynthesi 93.8 0.13 3.2E-06 32.2 4.8 18 64-81 13-30 (432)
49 pfam02374 ArsA_ATPase Anion-tr 93.7 0.062 1.6E-06 34.4 3.1 28 54-81 9-36 (304)
50 TIGR01969 minD_arch cell divis 93.7 0.035 8.8E-07 36.2 1.7 121 55-196 10-142 (258)
51 TIGR00064 ftsY signal recognit 93.5 0.059 1.5E-06 34.5 2.7 139 46-210 85-262 (284)
52 cd03116 MobB Molybdenum is an 93.3 0.069 1.8E-06 34.1 2.8 30 54-83 9-38 (159)
53 COG1763 MobB Molybdopterin-gua 93.3 0.17 4.4E-06 31.2 4.8 92 54-151 10-108 (161)
54 PRK13976 thymidylate kinase; P 93.2 0.14 3.5E-06 32.0 4.1 77 54-141 8-92 (202)
55 TIGR03499 FlhF flagellar biosy 93.2 0.16 4.2E-06 31.4 4.5 41 279-324 229-269 (282)
56 cd02040 NifH NifH gene encodes 93.1 0.13 3.3E-06 32.2 3.9 34 46-81 3-36 (270)
57 PRK10917 ATP-dependent DNA hel 93.1 0.86 2.2E-05 26.3 9.9 206 56-283 288-535 (677)
58 KOG2743 consensus 93.1 0.13 3.4E-06 32.0 4.0 146 41-195 54-222 (391)
59 cd03114 ArgK-like The function 93.0 0.27 6.9E-06 29.8 5.5 122 53-195 6-148 (148)
60 cd02034 CooC The accessory pro 92.8 0.095 2.4E-06 33.1 2.8 28 54-81 7-34 (116)
61 cd01983 Fer4_NifH The Fer4_Nif 92.6 0.13 3.4E-06 32.0 3.4 34 46-81 1-34 (99)
62 cd02036 MinD Bacterial cell di 92.5 0.1 2.7E-06 32.8 2.8 28 54-81 8-35 (179)
63 CHL00181 cbbX CbbX; Provisiona 92.5 0.62 1.6E-05 27.3 6.7 87 32-146 47-134 (287)
64 TIGR01968 minD_bact septum sit 92.4 0.13 3.4E-06 32.0 3.2 28 55-82 11-38 (272)
65 pfam08433 KTI12 Chromatin asso 92.4 0.26 6.6E-06 30.0 4.7 28 55-82 8-35 (266)
66 CHL00175 minD septum-site dete 92.3 0.12 3.1E-06 32.3 2.9 39 44-83 13-51 (279)
67 pfam00142 Fer4_NifH 4Fe-4S iro 92.3 0.13 3.2E-06 32.2 3.0 34 46-81 2-35 (269)
68 COG1341 Predicted GTPase or GT 92.3 0.2 5.2E-06 30.7 4.0 48 42-92 72-119 (398)
69 COG4098 comFA Superfamily II D 92.2 0.18 4.6E-06 31.1 3.7 29 53-81 123-151 (441)
70 COG1419 FlhF Flagellar GTP-bin 92.2 0.27 6.8E-06 29.9 4.5 72 55-142 212-289 (407)
71 PRK10818 cell division inhibit 92.2 0.13 3.3E-06 32.1 2.9 37 45-82 3-39 (270)
72 cd02037 MRP-like MRP (Multiple 92.0 0.13 3.4E-06 32.0 2.8 29 54-82 8-36 (169)
73 pfam03266 DUF265 Protein of un 91.9 0.32 8.2E-06 29.3 4.6 30 56-85 9-39 (168)
74 COG3367 Uncharacterized conser 91.8 0.47 1.2E-05 28.2 5.4 118 41-179 145-279 (339)
75 PRK11889 flhF flagellar biosyn 91.8 0.34 8.7E-06 29.1 4.7 83 45-143 240-329 (436)
76 PRK07933 thymidylate kinase; V 91.8 0.084 2.1E-06 33.5 1.6 37 54-90 8-45 (213)
77 COG1703 ArgK Putative periplas 91.8 0.59 1.5E-05 27.4 5.9 136 44-199 51-204 (323)
78 PRK11670 putative ATPase; Prov 91.6 0.16 4.1E-06 31.4 2.9 34 55-88 117-151 (369)
79 PRK11537 putative GTP-binding 91.3 0.26 6.7E-06 29.9 3.7 137 42-196 2-162 (317)
80 pfam03308 ArgK ArgK protein. T 91.2 0.85 2.2E-05 26.3 6.2 130 47-198 30-181 (267)
81 COG0523 Putative GTPases (G3E 91.0 0.49 1.3E-05 28.0 4.9 128 56-196 11-157 (323)
82 TIGR00345 arsA arsenite-activa 91.0 0.2 5.2E-06 30.7 2.9 182 55-249 6-259 (330)
83 PRK05703 flhF flagellar biosyn 90.9 0.44 1.1E-05 28.3 4.6 77 48-143 215-297 (412)
84 cd02038 FleN-like FleN is a me 90.9 0.21 5.3E-06 30.7 2.9 27 55-81 9-35 (139)
85 PRK13896 cobyrinic acid a,c-di 90.7 0.14 3.5E-06 32.0 1.7 30 53-82 9-38 (432)
86 pfam03618 DUF299 Domain of unk 90.6 0.15 3.8E-06 31.7 1.9 62 216-284 178-245 (255)
87 PRK05339 hypothetical protein; 90.5 0.15 3.9E-06 31.6 1.9 24 215-240 188-211 (273)
88 cd02117 NifH_like This family 90.5 0.25 6.3E-06 30.1 2.9 28 54-81 8-35 (212)
89 PRK10037 cell division protein 90.3 0.26 6.7E-06 29.9 3.0 36 45-81 2-37 (250)
90 COG0378 HypB Ni2+-binding GTPa 89.8 0.47 1.2E-05 28.1 3.9 124 45-195 12-153 (202)
91 PRK06995 flhF flagellar biosyn 89.6 0.69 1.8E-05 26.9 4.6 185 54-271 182-389 (404)
92 TIGR03172 probable selenium-de 89.6 0.34 8.6E-06 29.2 3.0 29 53-81 4-32 (232)
93 COG0003 ArsA Predicted ATPase 89.5 0.35 8.9E-06 29.1 3.1 29 54-82 10-38 (322)
94 PRK09435 arginine/ornithine tr 89.5 1.4 3.5E-05 24.9 6.0 130 47-198 50-201 (325)
95 KOG1532 consensus 89.4 0.56 1.4E-05 27.6 4.0 36 40-78 16-51 (366)
96 PRK13230 nitrogenase reductase 89.3 0.35 9E-06 29.0 2.9 28 54-81 9-36 (292)
97 PRK11776 ATP-dependent RNA hel 89.3 2 5.2E-05 23.6 9.8 209 54-284 49-301 (459)
98 cd02028 UMPK_like Uridine mono 89.2 0.34 8.7E-06 29.1 2.8 28 55-82 8-35 (179)
99 COG3640 CooC CO dehydrogenase 89.1 0.37 9.3E-06 28.9 2.9 118 55-191 9-139 (255)
100 PRK12727 flagellar biosynthesi 88.8 0.97 2.5E-05 25.9 4.9 11 57-67 359-369 (557)
101 PRK13695 putative NTPase; Prov 88.6 0.98 2.5E-05 25.9 4.8 30 55-84 12-42 (174)
102 TIGR00750 lao LAO/AO transport 88.5 0.43 1.1E-05 28.4 2.9 125 54-200 46-198 (333)
103 COG1058 CinA Predicted nucleot 88.2 2 5.1E-05 23.7 6.2 225 44-330 4-247 (255)
104 PRK07667 uridine kinase; Provi 87.9 0.51 1.3E-05 27.9 3.0 37 44-82 14-50 (190)
105 TIGR01085 murE UDP-N-acetylmur 87.9 0.67 1.7E-05 27.0 3.6 39 42-84 86-124 (494)
106 PRK10689 transcription-repair 87.5 2.6 6.7E-05 22.8 7.2 23 262-284 689-712 (1148)
107 pfam03205 MobB Molybdopterin g 87.2 0.53 1.3E-05 27.8 2.8 31 55-85 9-40 (122)
108 PRK11192 ATP-dependent RNA hel 87.2 1.6 4.1E-05 24.3 5.2 181 92-284 79-306 (417)
109 TIGR00313 cobQ cobyric acid sy 87.2 0.31 7.9E-06 29.4 1.5 219 55-294 8-261 (502)
110 TIGR00455 apsK adenylylsulfate 87.1 0.57 1.5E-05 27.5 2.9 78 55-133 28-115 (187)
111 PRK06835 DNA replication prote 87.1 0.61 1.5E-05 27.3 3.0 32 259-290 262-294 (330)
112 cd00009 AAA The AAA+ (ATPases 87.0 1.3 3.3E-05 25.0 4.6 37 42-81 18-54 (151)
113 COG1149 MinD superfamily P-loo 86.8 0.55 1.4E-05 27.7 2.6 25 55-80 11-35 (284)
114 PRK09183 transposase/IS protei 86.7 1.1 2.7E-05 25.6 4.1 36 43-81 101-136 (258)
115 PRK08939 primosomal protein Dn 86.2 0.89 2.3E-05 26.2 3.4 26 56-81 167-192 (306)
116 PRK00139 murE UDP-N-acetylmura 86.1 2.1 5.4E-05 23.5 5.4 37 41-81 97-133 (481)
117 KOG3022 consensus 86.1 1.5 3.9E-05 24.5 4.6 121 55-196 57-193 (300)
118 PRK13768 GTPase; Provisional 85.9 0.72 1.8E-05 26.8 2.9 33 46-81 5-37 (253)
119 COG2894 MinD Septum formation 85.8 0.75 1.9E-05 26.7 2.9 31 55-85 12-42 (272)
120 TIGR02640 gas_vesic_GvpN gas v 85.5 0.56 1.4E-05 27.6 2.2 49 44-110 22-70 (265)
121 PRK01077 cobyrinic acid a,c-di 85.4 0.52 1.3E-05 27.8 1.9 37 44-81 3-39 (451)
122 COG1618 Predicted nucleotide k 85.3 0.6 1.5E-05 27.4 2.2 41 55-95 14-57 (179)
123 pfam03029 ATP_bind_1 Conserved 85.2 0.82 2.1E-05 26.4 2.9 27 55-81 5-31 (234)
124 TIGR02237 recomb_radB DNA repa 85.2 0.89 2.3E-05 26.2 3.0 85 55-152 21-121 (223)
125 PRK12377 putative replication 85.2 0.92 2.4E-05 26.1 3.1 34 45-81 103-136 (248)
126 COG4088 Predicted nucleotide k 84.7 0.63 1.6E-05 27.2 2.1 33 55-87 10-42 (261)
127 PRK11199 tyrA bifunctional cho 84.5 1.7 4.3E-05 24.2 4.2 32 50-83 99-131 (374)
128 COG0125 Tmk Thymidylate kinase 84.4 1 2.6E-05 25.8 3.0 32 54-86 11-42 (208)
129 PRK13232 nifH nitrogenase redu 84.3 0.97 2.5E-05 25.9 2.9 27 55-81 10-36 (273)
130 PRK00683 murD UDP-N-acetylmura 84.3 1.8 4.5E-05 24.0 4.3 35 42-80 100-134 (418)
131 PRK06696 uridine kinase; Valid 84.3 1 2.6E-05 25.7 3.0 40 41-81 22-61 (227)
132 PRK06526 transposase; Provisio 84.2 1.7 4.2E-05 24.2 4.1 36 43-81 98-133 (254)
133 PRK08181 transposase; Validate 84.1 1.7 4.4E-05 24.1 4.1 35 44-81 107-141 (269)
134 cd01120 RecA-like_NTPases RecA 83.7 1.7 4.4E-05 24.1 4.0 29 55-83 8-36 (165)
135 cd01125 repA Hexameric Replica 83.6 3.9 0.0001 21.6 6.6 46 50-98 4-50 (239)
136 TIGR03167 tRNA_sel_U_synt tRNA 83.4 1.9 4.7E-05 23.9 4.0 21 66-86 91-111 (311)
137 pfam01695 IstB IstB-like ATP b 83.3 1.2 3.1E-05 25.2 3.0 35 44-81 48-82 (178)
138 COG0455 flhG Antiactivator of 83.3 1.1 2.8E-05 25.5 2.8 26 55-80 12-38 (262)
139 PRK13235 nifH nitrogenase redu 83.1 1.2 3.1E-05 25.2 3.0 27 54-80 9-35 (274)
140 PRK13974 thymidylate kinase; P 82.8 0.64 1.6E-05 27.2 1.5 35 54-88 11-49 (212)
141 PRK08309 short chain dehydroge 82.7 1.4 3.5E-05 24.8 3.1 31 52-85 4-34 (182)
142 PTZ00110 helicase; Provisional 82.6 1.3 3.3E-05 25.0 3.0 215 44-283 213-486 (602)
143 TIGR00041 DTMP_kinase thymidyl 82.4 1.1 2.8E-05 25.5 2.6 32 54-86 10-42 (211)
144 PRK08655 prephenate dehydrogen 82.4 1.7 4.3E-05 24.2 3.5 30 53-84 5-34 (441)
145 pfam02223 Thymidylate_kin Thym 82.4 1.2 3.1E-05 25.2 2.8 31 54-85 4-34 (186)
146 PRK05541 adenylylsulfate kinas 82.2 1.2 3.2E-05 25.1 2.8 26 55-80 16-41 (176)
147 COG2805 PilT Tfp pilus assembl 82.2 1.7 4.4E-05 24.1 3.5 72 55-141 134-205 (353)
148 smart00382 AAA ATPases associa 82.2 1.3 3.4E-05 24.9 2.9 32 46-80 5-36 (148)
149 COG1993 PII-like signaling pro 82.1 1.8 4.5E-05 24.1 3.5 57 61-130 23-83 (109)
150 TIGR02068 cya_phycin_syn cyano 82.0 2.7 7E-05 22.7 4.5 42 36-81 480-521 (876)
151 PRK06761 hypothetical protein; 81.9 1.7 4.4E-05 24.1 3.4 29 55-83 11-39 (281)
152 cd02032 Bchl_like This family 81.9 1.4 3.6E-05 24.8 3.0 31 55-87 9-39 (267)
153 cd01672 TMPK Thymidine monopho 81.9 1.4 3.6E-05 24.7 3.0 28 54-81 8-35 (200)
154 pfam05970 DUF889 PIF1 helicase 81.8 1.4 3.5E-05 24.9 2.9 27 54-80 2-28 (418)
155 TIGR03574 selen_PSTK L-seryl-t 81.7 1.2 3.2E-05 25.1 2.6 27 55-81 8-34 (249)
156 COG0489 Mrp ATPases involved i 81.6 1.5 3.9E-05 24.5 3.1 29 53-81 65-93 (265)
157 PRK01438 murD UDP-N-acetylmura 81.4 4.2 0.00011 21.4 5.2 36 41-80 119-154 (481)
158 pfam01583 APS_kinase Adenylyls 81.3 1.4 3.6E-05 24.8 2.8 26 55-80 11-36 (157)
159 PRK00726 murG N-acetylglucosam 80.8 1.1 2.9E-05 25.4 2.2 34 52-85 6-40 (359)
160 cd00268 DEADc DEAD-box helicas 80.6 2.1 5.3E-05 23.5 3.5 96 55-159 45-150 (203)
161 COG1200 RecG RecG-like helicas 80.6 2.1 5.4E-05 23.5 3.5 99 56-168 293-400 (677)
162 COG0572 Udk Uridine kinase [Nu 80.5 2.1 5.3E-05 23.6 3.4 46 44-91 6-53 (218)
163 cd03110 Fer4_NifH_child This p 80.4 0.99 2.5E-05 25.8 1.8 22 55-80 9-30 (179)
164 pfam04851 ResIII Type III rest 79.8 1.9 4.8E-05 23.8 3.0 28 54-81 26-53 (103)
165 KOG3877 consensus 79.8 1.9 4.7E-05 23.9 3.0 48 38-89 65-118 (393)
166 COG1806 Uncharacterized protei 79.7 1.6 4E-05 24.4 2.6 50 227-280 194-248 (273)
167 cd02027 APSK Adenosine 5'-phos 79.7 1.7 4.3E-05 24.2 2.8 26 55-80 8-33 (149)
168 KOG0345 consensus 79.5 5.4 0.00014 20.6 9.4 215 53-286 50-318 (567)
169 PRK01297 ATP-dependent RNA hel 79.4 4.2 0.00011 21.4 4.7 225 44-283 115-390 (472)
170 PRK11091 aerobic respiration c 79.4 3.6 9.1E-05 21.9 4.3 113 51-168 463-585 (779)
171 PRK03803 murD UDP-N-acetylmura 79.3 3.6 9.2E-05 21.9 4.3 34 42-79 107-140 (448)
172 COG1484 DnaC DNA replication p 79.1 2 5E-05 23.7 2.9 33 49-81 105-140 (254)
173 PRK10846 bifunctional folylpol 78.6 5.1 0.00013 20.8 4.9 109 29-147 35-152 (416)
174 COG4240 Predicted kinase [Gene 78.4 2.2 5.7E-05 23.3 3.0 37 45-82 50-87 (300)
175 PRK03846 adenylylsulfate kinas 78.1 2.1 5.4E-05 23.5 2.8 26 55-80 33-58 (198)
176 KOG0735 consensus 78.0 2.3 6E-05 23.2 3.1 30 44-73 426-458 (952)
177 KOG1805 consensus 78.0 2.6 6.5E-05 22.9 3.2 28 54-81 693-720 (1100)
178 TIGR01777 yfcH conserved hypot 77.8 2.9 7.3E-05 22.6 3.5 115 52-169 2-151 (307)
179 COG0529 CysC Adenylylsulfate k 77.6 2.3 5.8E-05 23.3 2.9 26 55-80 32-57 (197)
180 PRK09401 reverse gyrase; Revie 77.2 5.2 0.00013 20.7 4.6 96 55-164 102-211 (1176)
181 PRK00421 murC UDP-N-acetylmura 77.2 6.3 0.00016 20.1 5.3 34 44-81 108-141 (459)
182 PRK00698 tmk thymidylate kinas 77.1 2.5 6.3E-05 23.0 3.0 29 54-83 11-39 (204)
183 PRK13233 nifH nitrogenase redu 77.0 2.5 6.3E-05 23.0 2.9 28 54-81 10-38 (275)
184 PRK09270 frcK putative fructos 76.4 6.6 0.00017 20.0 6.6 131 47-200 35-177 (230)
185 KOG1803 consensus 76.3 2.1 5.4E-05 23.5 2.4 27 55-81 210-236 (649)
186 PRK02705 murD UDP-N-acetylmura 76.2 4.5 0.00012 21.1 4.1 34 43-80 108-141 (459)
187 PRK13185 chlL protochlorophyll 76.1 2.7 6.9E-05 22.7 2.9 32 54-87 10-41 (269)
188 COG0771 MurD UDP-N-acetylmuram 75.9 2.9 7.5E-05 22.5 3.1 34 42-79 108-141 (448)
189 KOG0331 consensus 75.8 6.8 0.00017 19.9 6.3 216 52-286 134-402 (519)
190 COG1797 CobB Cobyrinic acid a, 75.7 1.8 4.7E-05 23.9 2.0 25 53-77 8-32 (451)
191 pfam00485 PRK Phosphoribulokin 75.7 1.5 3.9E-05 24.5 1.6 27 55-81 8-34 (196)
192 PRK00889 adenylylsulfate kinas 75.6 2.7 6.8E-05 22.8 2.8 26 55-80 13-38 (175)
193 PRK11466 hybrid sensory histid 75.3 4.1 0.0001 21.5 3.7 110 55-168 624-742 (912)
194 TIGR03575 selen_PSTK_euk L-ser 75.0 3.3 8.5E-05 22.1 3.2 30 55-86 8-38 (340)
195 smart00487 DEXDc DEAD-like hel 74.9 6.1 0.00016 20.2 4.5 97 54-164 32-141 (201)
196 PRK01390 murD UDP-N-acetylmura 74.3 5.7 0.00015 20.4 4.2 35 41-79 111-145 (457)
197 cd01121 Sms Sms (bacterial rad 74.2 6.6 0.00017 20.0 4.5 71 56-141 92-165 (372)
198 PRK00090 bioD dithiobiotin syn 74.0 3.2 8.1E-05 22.2 2.9 28 54-81 8-35 (223)
199 PRK05769 4-aminobutyrate amino 73.8 7.6 0.00019 19.5 5.2 117 52-175 121-302 (442)
200 TIGR02928 TIGR02928 orc1/cdc6 73.6 2.1 5.2E-05 23.6 1.8 89 41-157 41-149 (383)
201 COG5258 GTPBP1 GTPase [General 73.5 7.8 0.0002 19.5 5.9 96 48-148 133-244 (527)
202 PRK09361 radB DNA repair and r 73.4 3 7.8E-05 22.4 2.6 27 55-81 32-58 (224)
203 PRK06921 hypothetical protein; 73.2 3.5 9E-05 21.9 2.9 32 46-80 119-151 (265)
204 PRK05834 hypothetical protein; 73.1 6.3 0.00016 20.1 4.2 13 138-150 108-120 (197)
205 cd05017 SIS_PGI_PMI_1 The memb 73.0 8 0.0002 19.4 6.3 93 51-148 1-104 (119)
206 COG0394 Wzb Protein-tyrosine-p 72.9 6.1 0.00016 20.2 4.1 37 43-86 4-40 (139)
207 TIGR00073 hypB hydrogenase acc 72.8 3 7.6E-05 22.4 2.5 37 44-81 32-68 (225)
208 TIGR02154 PhoB phosphate regul 72.7 2.5 6.3E-05 23.0 2.0 57 104-160 8-84 (226)
209 KOG0743 consensus 72.6 2.6 6.7E-05 22.8 2.2 20 224-243 362-381 (457)
210 PRK13973 thymidylate kinase; P 72.6 3.4 8.7E-05 22.0 2.7 33 54-87 11-43 (216)
211 CHL00194 ycf39 Ycf39; Provisio 72.4 4.9 0.00013 20.9 3.5 31 52-84 4-34 (319)
212 cd02023 UMPK Uridine monophosp 72.4 3.3 8.4E-05 22.1 2.6 29 54-84 7-36 (198)
213 TIGR01819 F420_cofD LPPG:Fo 2- 72.4 4.5 0.00011 21.2 3.3 14 278-291 342-355 (359)
214 TIGR02759 TraD_Ftype type IV c 72.3 3.7 9.4E-05 21.8 2.9 69 55-125 217-310 (613)
215 COG3854 SpoIIIAA ncharacterize 72.3 8.3 0.00021 19.3 4.9 19 225-243 221-239 (308)
216 pfam01451 LMWPc Low molecular 72.3 4.5 0.00011 21.2 3.3 34 44-84 3-36 (140)
217 TIGR00417 speE spermidine synt 72.2 2.2 5.7E-05 23.3 1.7 60 134-196 131-198 (284)
218 TIGR01447 recD exodeoxyribonuc 72.0 2.3 5.8E-05 23.3 1.7 28 46-73 238-269 (753)
219 cd01393 recA_like RecA is a b 72.0 8.4 0.00021 19.2 5.3 20 55-74 28-47 (226)
220 PRK10161 transcriptional regul 72.0 8.4 0.00021 19.2 4.8 47 115-161 27-85 (229)
221 cd01129 PulE-GspE PulE/GspE Th 71.5 8.6 0.00022 19.2 6.3 27 54-80 88-114 (264)
222 PRK02472 murD UDP-N-acetylmura 71.4 8.6 0.00022 19.1 4.7 34 43-80 111-144 (450)
223 TIGR02475 CobW cobalamin biosy 71.2 2.6 6.6E-05 22.9 1.9 143 41-196 3-190 (349)
224 COG3876 Uncharacterized protei 71.2 8.7 0.00022 19.1 5.1 107 66-178 34-180 (409)
225 cd06218 DHOD_e_trans FAD/NAD b 71.1 4.3 0.00011 21.3 3.0 15 314-328 187-201 (246)
226 PRK00411 cdc6 cell division co 71.0 3.4 8.5E-05 22.1 2.4 23 55-77 64-86 (394)
227 PRK11784 tRNA 2-selenouridine 70.9 6.8 0.00017 19.9 3.9 33 154-192 206-238 (333)
228 COG0467 RAD55 RecA-superfamily 70.6 4.4 0.00011 21.2 3.0 34 45-81 25-58 (260)
229 COG0421 SpeE Spermidine syntha 70.6 1.9 4.9E-05 23.8 1.1 59 137-196 133-192 (282)
230 CHL00072 chlL photochlorophyll 70.3 4.5 0.00012 21.1 3.0 31 55-87 9-39 (271)
231 cd00610 OAT_like Acetyl ornith 70.3 9.1 0.00023 19.0 5.9 117 52-175 101-271 (413)
232 cd03111 CpaE_like This protein 70.3 4.3 0.00011 21.3 2.8 28 54-81 8-36 (106)
233 TIGR01387 cztR_silR_copR heavy 70.2 4.4 0.00011 21.2 2.9 31 147-178 37-67 (219)
234 TIGR00101 ureG urease accessor 70.0 4.4 0.00011 21.2 2.8 120 48-195 3-148 (199)
235 KOG4658 consensus 69.9 8.9 0.00023 19.1 4.4 105 47-162 180-299 (889)
236 COG0285 FolC Folylpolyglutamat 69.8 9.3 0.00024 18.9 7.1 58 32-94 33-90 (427)
237 cd03213 ABCG_EPDR ABCG transpo 69.8 4.7 0.00012 21.0 3.0 18 54-71 43-60 (194)
238 cd01124 KaiC KaiC is a circadi 69.8 4.8 0.00012 20.9 3.0 27 55-81 8-34 (187)
239 TIGR01526 nadR_NMN_Atrans nico 69.7 3 7.6E-05 22.4 1.9 67 57-141 186-255 (346)
240 PRK00784 cobyric acid synthase 69.6 2.9 7.4E-05 22.5 1.8 24 55-78 13-36 (492)
241 COG1855 ATPase (PilT family) [ 69.6 3.8 9.6E-05 21.7 2.4 31 50-80 265-297 (604)
242 PRK10773 murF UDP-N-acetylmura 69.6 6.9 0.00018 19.8 3.8 35 41-79 97-131 (452)
243 PRK01710 murD UDP-N-acetylmura 69.4 9 0.00023 19.0 4.3 34 43-80 116-149 (458)
244 KOG1159 consensus 69.4 9.5 0.00024 18.9 5.4 20 222-241 432-454 (574)
245 pfam09001 DUF1890 Domain of un 69.2 4.5 0.00011 21.2 2.7 24 59-82 12-35 (138)
246 TIGR00150 TIGR00150 conserved 69.2 3.4 8.7E-05 22.0 2.1 67 46-118 31-107 (147)
247 PRK11634 ATP-dependent RNA hel 69.1 6.4 0.00016 20.1 3.5 218 44-284 37-304 (629)
248 PTZ00274 cytochrome b5 reducta 69.0 5.1 0.00013 20.8 3.0 13 138-150 46-58 (325)
249 pfam00437 GSPII_E Type II/IV s 68.8 4.7 0.00012 21.0 2.7 15 169-183 118-132 (283)
250 PRK03670 competence damage-ind 68.6 9.8 0.00025 18.8 6.0 38 44-81 3-40 (252)
251 COG0521 MoaB Molybdopterin bio 68.6 8.3 0.00021 19.3 4.0 19 225-243 129-147 (169)
252 PRK13764 ATPase; Provisional 68.4 3.9 1E-04 21.6 2.3 31 50-80 261-293 (605)
253 cd01394 radB RadB. The archaea 68.4 5.1 0.00013 20.8 2.9 27 55-81 28-54 (218)
254 COG3451 VirB4 Type IV secretor 68.1 6.5 0.00017 20.0 3.4 40 48-87 435-478 (796)
255 TIGR00338 serB phosphoserine p 68.1 3.8 9.7E-05 21.7 2.2 27 59-85 87-113 (223)
256 PRK09369 UDP-N-acetylglucosami 67.8 10 0.00026 18.6 6.0 19 58-77 120-138 (417)
257 cd03109 DTBS Dethiobiotin synt 67.7 5.2 0.00013 20.7 2.8 25 56-80 9-33 (134)
258 cd02030 NDUO42 NADH:Ubiquinone 67.5 4.4 0.00011 21.2 2.4 21 47-70 2-23 (219)
259 cd03796 GT1_PIG-A_like This fa 67.4 5.6 0.00014 20.5 2.9 34 53-88 12-45 (398)
260 PRK10463 hydrogenase nickel in 67.2 7.2 0.00018 19.7 3.4 36 45-81 103-138 (290)
261 pfam00006 ATP-synt_ab ATP synt 67.1 5.8 0.00015 20.4 3.0 92 54-157 23-129 (213)
262 cd01976 Nitrogenase_MoFe_alpha 67.0 11 0.00027 18.5 4.7 50 218-271 296-345 (421)
263 pfam05673 DUF815 Protein of un 66.9 4.9 0.00012 20.9 2.5 75 3-83 2-90 (248)
264 PRK03369 murD UDP-N-acetylmura 66.7 11 0.00027 18.5 5.3 35 42-80 115-149 (487)
265 PRK10875 recD exonuclease V su 66.6 4.1 0.00011 21.4 2.1 17 56-72 172-188 (607)
266 cd06213 oxygenase_e_transfer_s 66.4 7.9 0.0002 19.4 3.5 17 312-328 198-214 (227)
267 cd00984 DnaB_C DnaB helicase C 66.3 6.2 0.00016 20.2 3.0 27 55-81 22-49 (242)
268 PRK12446 N-acetylglucosaminyl 65.7 5.5 0.00014 20.5 2.6 30 52-82 6-37 (352)
269 PRK10710 DNA-binding transcrip 65.7 11 0.00028 18.4 4.5 31 115-145 35-65 (240)
270 KOG0337 consensus 65.4 11 0.00029 18.3 6.4 109 43-166 51-179 (529)
271 cd01122 GP4d_helicase GP4d_hel 65.2 6.2 0.00016 20.2 2.8 27 55-81 39-66 (271)
272 pfam03796 DnaB_C DnaB-like hel 65.0 6.3 0.00016 20.1 2.8 27 55-81 28-55 (186)
273 cd01131 PilT Pilus retraction 64.9 12 0.00029 18.3 4.1 26 55-81 10-35 (198)
274 TIGR00347 bioD dethiobiotin sy 64.9 5.8 0.00015 20.4 2.6 103 56-173 8-128 (187)
275 pfam02641 DUF190 Uncharacteriz 64.8 12 0.0003 18.2 4.2 75 58-142 17-97 (101)
276 PRK00054 dihydroorotate dehydr 64.7 6.5 0.00017 20.0 2.8 13 314-326 186-198 (248)
277 PRK05632 phosphate acetyltrans 64.6 6 0.00015 20.3 2.6 26 55-80 11-36 (702)
278 PRK07133 DNA polymerase III su 64.6 3.7 9.4E-05 21.8 1.5 18 55-72 49-66 (718)
279 cd06190 T4MO_e_transfer_like T 64.6 9.7 0.00025 18.8 3.7 21 222-243 97-118 (232)
280 KOG2825 consensus 64.5 6.5 0.00017 20.0 2.8 37 45-83 20-56 (323)
281 cd00763 Bacterial_PFK Phosphof 64.3 11 0.00028 18.4 4.0 123 49-172 3-138 (317)
282 cd06188 NADH_quinone_reductase 63.9 9.9 0.00025 18.7 3.6 15 313-327 255-269 (283)
283 PRK09376 rho transcription ter 63.8 12 0.0003 18.2 4.0 87 55-160 178-279 (416)
284 PRK09417 mogA molybdenum cofac 63.8 9.8 0.00025 18.8 3.6 20 224-243 126-145 (192)
285 PRK10436 hypothetical protein; 63.5 12 0.00031 18.1 5.4 15 58-72 77-91 (461)
286 TIGR00929 VirB4_CagE type IV s 63.5 8.5 0.00022 19.2 3.2 40 48-87 515-561 (931)
287 PRK13826 Dtr system oriT relax 63.4 12 0.00031 18.1 5.8 96 54-152 405-514 (1102)
288 PRK13886 conjugal transfer pro 62.9 5.2 0.00013 20.7 2.0 26 55-80 12-37 (241)
289 cd00983 recA RecA is a bacter 62.8 7.1 0.00018 19.8 2.7 42 39-80 28-89 (325)
290 COG1428 Deoxynucleoside kinase 62.6 6.4 0.00016 20.1 2.5 25 44-71 4-29 (216)
291 pfam02367 UPF0079 Uncharacteri 62.4 9.3 0.00024 18.9 3.3 53 41-96 13-68 (123)
292 pfam00175 NAD_binding_1 Oxidor 62.3 5.3 0.00013 20.7 2.0 29 52-80 1-29 (106)
293 pfam00072 Response_reg Respons 62.3 13 0.00033 17.9 4.1 26 116-141 24-49 (111)
294 KOG0744 consensus 62.1 4.7 0.00012 21.0 1.7 43 39-86 166-212 (423)
295 PHA00520 packaging NTPase P4 62.0 4.9 0.00013 20.9 1.8 25 55-79 122-146 (326)
296 TIGR03015 pepcterm_ATPase puta 62.0 5.5 0.00014 20.5 2.1 35 44-81 44-78 (269)
297 PRK05464 Na(+)-translocating N 61.9 9.5 0.00024 18.9 3.2 28 65-94 54-81 (408)
298 cd03238 ABC_UvrA The excision 61.8 8.5 0.00022 19.2 3.0 12 55-66 30-41 (176)
299 cd06212 monooxygenase_like The 61.8 12 0.00032 18.0 3.8 16 313-328 203-218 (232)
300 PRK11448 hsdR type I restricti 61.7 6.7 0.00017 19.9 2.4 28 53-80 443-470 (1126)
301 cd00115 LMWPc Substituted upda 61.6 5.1 0.00013 20.8 1.8 84 44-149 3-91 (141)
302 cd00046 DEXDc DEAD-like helica 61.6 13 0.00033 17.9 3.9 17 55-71 9-26 (144)
303 PRK04308 murD UDP-N-acetylmura 61.5 11 0.00027 18.5 3.5 34 43-80 109-142 (445)
304 cd06216 FNR_iron_sulfur_bindin 61.4 11 0.00029 18.3 3.5 20 223-243 123-143 (243)
305 pfam06745 KaiC KaiC. This fami 61.4 8.3 0.00021 19.3 2.9 27 55-81 28-55 (231)
306 PRK04328 hypothetical protein; 61.2 9.2 0.00024 18.9 3.1 27 55-81 33-59 (250)
307 cd02025 PanK Pantothenate kina 61.1 8.2 0.00021 19.3 2.8 29 56-84 9-40 (220)
308 PRK04663 murD UDP-N-acetylmura 60.8 9.2 0.00023 19.0 3.0 34 43-80 107-140 (438)
309 COG1110 Reverse gyrase [DNA re 60.8 14 0.00035 17.8 4.5 96 55-164 106-215 (1187)
310 cd06189 flavin_oxioreductase N 60.7 12 0.0003 18.2 3.5 16 313-328 196-211 (224)
311 PRK04690 murD UDP-N-acetylmura 60.5 9.8 0.00025 18.8 3.1 33 44-80 115-147 (468)
312 pfam00931 NB-ARC NB-ARC domain 60.5 14 0.00035 17.7 5.3 26 43-70 18-43 (285)
313 TIGR02397 dnaX_nterm DNA polym 60.4 5.3 0.00014 20.6 1.7 16 56-71 46-61 (363)
314 KOG0989 consensus 60.4 5.1 0.00013 20.8 1.7 23 55-77 66-88 (346)
315 COG0857 Pta BioD-like N-termin 60.4 9.4 0.00024 18.9 3.0 28 54-81 11-38 (354)
316 PRK08533 flagellar accessory p 60.4 9.7 0.00025 18.8 3.1 33 46-81 27-59 (230)
317 cd06191 FNR_iron_sulfur_bindin 60.3 13 0.00032 18.0 3.6 16 312-327 202-217 (231)
318 PRK05506 bifunctional sulfate 60.3 9.9 0.00025 18.7 3.1 58 225-282 445-521 (613)
319 PRK09390 fixJ response regulat 60.2 11 0.00029 18.3 3.4 71 88-160 2-83 (202)
320 cd06195 FNR1 Ferredoxin-NADP+ 59.9 13 0.00032 18.0 3.6 16 313-328 207-222 (241)
321 cd06184 flavohem_like_fad_nad_ 59.7 13 0.00034 17.8 3.7 18 312-329 214-231 (247)
322 PRK03806 murD UDP-N-acetylmura 59.7 11 0.00028 18.4 3.2 34 43-80 104-137 (438)
323 COG1245 Predicted ATPase, RNas 59.6 7.4 0.00019 19.6 2.4 36 38-73 90-127 (591)
324 PRK11929 putative bifunctional 59.5 14 0.00036 17.6 5.9 87 229-326 828-920 (953)
325 COG0707 MurG UDP-N-acetylgluco 59.4 9.6 0.00025 18.8 2.9 37 52-88 5-43 (357)
326 pfam00365 PFK Phosphofructokin 59.3 14 0.00037 17.6 4.1 202 49-284 3-223 (279)
327 cd03276 ABC_SMC6_euk Eukaryoti 59.1 6 0.00015 20.3 1.8 31 51-84 24-56 (198)
328 PRK05480 uridine kinase; Provi 59.1 11 0.00028 18.4 3.2 28 53-82 13-40 (209)
329 cd03112 CobW_like The function 59.0 8.6 0.00022 19.2 2.6 29 56-86 10-38 (158)
330 PTZ00112 origin recognition co 58.7 6.6 0.00017 20.0 2.0 20 54-73 301-320 (650)
331 PRK13234 nifH nitrogenase redu 58.7 10 0.00025 18.7 2.9 32 55-88 13-44 (293)
332 PRK06067 flagellar accessory p 58.6 11 0.00029 18.3 3.1 35 44-81 33-67 (241)
333 COG4634 Uncharacterized protei 58.4 15 0.00038 17.5 4.7 93 234-333 10-103 (113)
334 pfam00004 AAA ATPase family as 58.4 5.4 0.00014 20.6 1.5 24 55-81 7-30 (131)
335 PRK13236 nitrogenase reductase 58.3 11 0.00027 18.5 3.0 31 55-87 15-45 (295)
336 PRK12374 putative dithiobiotin 58.3 9.4 0.00024 18.9 2.7 26 55-80 12-37 (231)
337 PRK02006 murD UDP-N-acetylmura 58.2 11 0.00027 18.5 3.0 32 45-80 123-154 (501)
338 COG1474 CDC6 Cdc6-related prot 58.2 7 0.00018 19.8 2.0 29 46-77 45-73 (366)
339 TIGR02880 cbbX_cfxQ CbbX prote 58.1 7 0.00018 19.8 2.0 33 44-83 59-91 (284)
340 cd03819 GT1_WavL_like This fam 57.9 7.3 0.00019 19.7 2.1 33 49-83 4-36 (355)
341 COG5271 MDN1 AAA ATPase contai 57.8 14 0.00035 17.7 3.5 32 38-72 459-490 (4600)
342 TIGR02173 cyt_kin_arch cytidyl 57.8 5.5 0.00014 20.5 1.5 25 55-84 9-33 (173)
343 cd03232 ABC_PDR_domain2 The pl 57.5 10 0.00027 18.6 2.8 15 54-68 41-55 (192)
344 pfam02689 Herpes_Helicase Heli 57.4 15 0.00039 17.4 5.1 50 2-53 187-245 (801)
345 TIGR03649 ergot_EASG ergot alk 57.4 15 0.00039 17.4 3.7 31 52-84 3-33 (285)
346 pfam02562 PhoH PhoH-like prote 57.4 11 0.00028 18.4 2.9 36 46-84 22-58 (205)
347 TIGR02875 spore_0_A sporulatio 57.3 6.7 0.00017 19.9 1.8 45 116-160 30-86 (270)
348 pfam07693 KAP_NTPase KAP famil 57.2 9.2 0.00023 19.0 2.5 33 47-79 21-53 (301)
349 cd03246 ABCC_Protease_Secretio 57.1 3.2 8.3E-05 22.2 0.2 88 55-147 37-127 (173)
350 pfam08245 Mur_ligase_M Mur lig 57.0 11 0.00028 18.4 2.9 28 53-80 1-28 (188)
351 cd06211 phenol_2-monooxygenase 56.9 16 0.0004 17.3 4.1 15 313-327 210-224 (238)
352 cd06214 PA_degradation_oxidore 56.9 16 0.0004 17.3 3.9 21 222-243 108-129 (241)
353 COG0132 BioD Dethiobiotin synt 56.7 8.4 0.00021 19.2 2.3 26 55-80 12-37 (223)
354 cd03277 ABC_SMC5_euk Eukaryoti 56.7 6.7 0.00017 19.9 1.7 31 51-84 26-58 (213)
355 PRK00091 miaA tRNA delta(2)-is 56.6 12 0.0003 18.2 2.9 32 43-81 3-34 (304)
356 TIGR03420 DnaA_homol_Hda DnaA 56.2 11 0.00028 18.4 2.8 34 45-81 40-73 (226)
357 PRK10517 magnesium-transportin 56.0 16 0.00041 17.2 4.5 33 223-257 537-574 (900)
358 PRK01368 murD UDP-N-acetylmura 56.0 15 0.00037 17.5 3.4 34 43-80 103-136 (450)
359 PRK13231 nitrogenase reductase 55.9 12 0.0003 18.2 2.9 26 54-80 10-35 (264)
360 KOG0063 consensus 55.9 4.4 0.00011 21.3 0.7 35 38-72 90-126 (592)
361 PRK08506 replicative DNA helic 55.8 13 0.00033 17.9 3.1 27 55-81 202-228 (473)
362 PRK10536 hypothetical protein; 55.7 13 0.00032 18.0 3.0 37 45-84 76-113 (262)
363 pfam04321 RmlD_sub_bind RmlD s 55.7 16 0.00042 17.2 3.6 30 52-83 2-31 (284)
364 PRK00141 murD UDP-N-acetylmura 55.7 13 0.00033 17.9 3.1 28 53-80 128-155 (476)
365 PTZ00319 NADH-cytochrome B5 re 55.4 13 0.00033 17.9 3.1 25 223-250 270-299 (303)
366 cd04951 GT1_WbdM_like This fam 55.1 17 0.00042 17.2 3.5 36 47-84 4-39 (360)
367 PRK08118 topology modulation p 55.1 11 0.00027 18.5 2.5 22 46-70 4-25 (167)
368 pfam00154 RecA recA bacterial 55.0 17 0.00043 17.1 4.9 41 40-80 26-86 (322)
369 pfam07728 AAA_5 AAA domain (dy 54.9 5.2 0.00013 20.7 0.9 36 46-84 2-37 (139)
370 PRK07609 CDP-6-deoxy-delta-3,4 54.5 16 0.00041 17.2 3.4 21 222-243 204-225 (337)
371 TIGR00643 recG ATP-dependent D 54.4 11 0.00029 18.3 2.6 214 47-282 332-597 (721)
372 PRK06749 replicative DNA helic 54.3 14 0.00037 17.6 3.1 26 56-81 196-221 (428)
373 PRK11872 antC anthranilate dio 54.3 16 0.00042 17.2 3.4 23 222-244 209-231 (340)
374 TIGR03466 HpnA hopanoid-associ 54.1 17 0.00044 17.0 3.9 32 52-85 4-35 (328)
375 PRK00440 rfc replication facto 53.8 8.4 0.00022 19.2 1.9 17 55-71 46-62 (318)
376 PRK09354 recA recombinase A; P 53.7 13 0.00034 17.8 2.9 44 37-80 31-94 (350)
377 pfam07726 AAA_3 ATPase family 53.7 6.9 0.00018 19.8 1.4 18 56-73 9-26 (131)
378 cd06187 O2ase_reductase_like T 53.7 18 0.00045 17.0 3.8 16 313-328 196-211 (224)
379 pfam06414 Zeta_toxin Zeta toxi 53.5 18 0.00045 16.9 3.8 27 41-70 10-36 (191)
380 PRK06305 DNA polymerase III su 53.5 7.1 0.00018 19.7 1.4 19 55-73 48-66 (462)
381 KOG0338 consensus 53.5 18 0.00045 16.9 4.9 101 52-161 224-336 (691)
382 TIGR00348 hsdR type I site-spe 53.3 11 0.00027 18.5 2.3 130 53-197 330-499 (813)
383 PRK08084 DNA replication initi 53.2 15 0.00037 17.5 3.0 27 55-81 54-80 (235)
384 PRK12402 replication factor C 53.0 7.3 0.00019 19.7 1.4 25 46-73 39-63 (337)
385 TIGR02858 spore_III_AA stage I 53.0 18 0.00046 16.9 4.7 16 57-72 134-149 (282)
386 pfam01370 Epimerase NAD depend 52.9 18 0.00046 16.9 3.9 32 52-85 2-33 (235)
387 PRK10680 molybdopterin biosynt 52.8 18 0.00046 16.9 5.0 18 177-194 235-252 (411)
388 COG5623 CLP1 Predicted GTPase 52.8 18 0.00046 16.9 5.6 57 20-81 76-134 (424)
389 COG4096 HsdR Type I site-speci 52.5 9.4 0.00024 18.9 1.9 28 53-80 192-219 (875)
390 PRK12678 transcription termina 52.5 14 0.00037 17.6 2.9 87 55-158 420-519 (667)
391 pfam05872 DUF853 Bacterial pro 52.3 14 0.00037 17.6 2.9 26 55-81 30-55 (504)
392 cd03805 GT1_ALG2_like This fam 52.1 13 0.00034 17.8 2.7 36 48-85 6-41 (392)
393 PRK05595 replicative DNA helic 52.1 18 0.00046 16.9 3.3 26 56-81 211-237 (444)
394 PRK07261 topology modulation p 52.1 13 0.00033 17.9 2.6 22 46-70 3-24 (171)
395 cd06210 MMO_FAD_NAD_binding Me 51.9 19 0.00048 16.8 3.6 18 312-329 206-223 (236)
396 KOG0738 consensus 51.8 1.2 3.1E-05 25.2 -2.7 25 134-158 333-357 (491)
397 COG1197 Mfd Transcription-repa 51.8 19 0.00048 16.8 7.8 26 56-81 625-650 (1139)
398 PHA00547 hypothetical protein 51.8 19 0.00048 16.8 5.3 28 41-72 74-101 (337)
399 PRK06217 hypothetical protein; 51.5 14 0.00035 17.7 2.6 23 46-71 4-26 (185)
400 PRK08555 consensus 51.5 19 0.00048 16.7 6.9 39 52-91 118-156 (443)
401 pfam05368 NmrA NmrA-like famil 51.5 19 0.00048 16.7 3.8 31 52-84 2-32 (232)
402 pfam00493 MCM MCM2/3/5 family. 51.4 19 0.00048 16.7 4.7 140 40-195 54-207 (327)
403 COG3378 Phage associated DNA p 51.3 19 0.00049 16.7 5.9 60 11-73 194-257 (517)
404 TIGR03600 phage_DnaB phage rep 51.3 18 0.00047 16.8 3.3 26 56-81 204-230 (421)
405 PRK07429 phosphoribulokinase; 51.3 12 0.00032 18.0 2.4 34 47-82 9-42 (331)
406 PRK05563 DNA polymerase III su 51.3 8.1 0.00021 19.4 1.4 18 55-72 47-64 (541)
407 cd00764 Eukaryotic_PFK Phospho 51.2 19 0.00049 16.7 6.2 119 46-171 389-530 (762)
408 COG2874 FlaH Predicted ATPases 51.2 16 0.00041 17.2 3.0 29 55-83 37-65 (235)
409 cd00885 cinA Competence-damage 51.2 19 0.00049 16.7 4.8 38 44-81 2-39 (170)
410 PRK04195 replication factor C 51.1 19 0.00049 16.7 3.9 29 44-78 41-69 (403)
411 PRK05973 replicative DNA helic 51.1 16 0.00041 17.3 2.9 31 55-85 73-103 (237)
412 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 51.1 8.6 0.00022 19.2 1.5 39 39-80 9-47 (232)
413 TIGR02915 PEP_resp_reg putativ 51.0 12 0.00031 18.1 2.3 181 114-311 21-313 (451)
414 PRK06647 DNA polymerase III su 50.9 8.3 0.00021 19.3 1.5 21 52-72 42-64 (560)
415 pfam01935 DUF87 Domain of unkn 50.9 16 0.00041 17.2 2.9 23 50-72 27-49 (218)
416 TIGR02317 prpB methylisocitrat 50.9 7 0.00018 19.8 1.1 128 43-195 12-177 (287)
417 TIGR01087 murD UDP-N-acetylmur 50.7 18 0.00046 16.9 3.1 34 42-79 108-141 (476)
418 COG0470 HolB ATPase involved i 50.7 11 0.00027 18.5 1.9 22 53-74 29-52 (325)
419 COG0802 Predicted ATPase or ki 50.6 8.2 0.00021 19.3 1.4 42 41-85 23-67 (149)
420 PRK08674 bifunctional phosphog 50.5 20 0.0005 16.6 8.2 95 48-148 33-139 (328)
421 COG4081 Uncharacterized protei 50.5 14 0.00036 17.6 2.6 25 59-83 17-41 (148)
422 COG0513 SrmB Superfamily II DN 50.4 20 0.0005 16.6 4.2 222 43-285 59-333 (513)
423 PRK13889 conjugal transfer rel 50.4 20 0.0005 16.6 5.9 96 54-151 370-478 (992)
424 cd02026 PRK Phosphoribulokinas 50.2 13 0.00034 17.8 2.4 26 55-82 8-33 (273)
425 PRK05896 DNA polymerase III su 50.1 9 0.00023 19.0 1.5 24 46-72 41-64 (613)
426 cd03784 GT1_Gtf_like This fami 50.1 17 0.00042 17.1 2.9 30 53-82 7-36 (401)
427 cd03808 GT1_cap1E_like This fa 50.1 19 0.00049 16.7 3.2 38 46-86 2-39 (359)
428 TIGR01082 murC UDP-N-acetylmur 50.1 16 0.00042 17.2 2.9 32 53-84 113-144 (491)
429 PRK11331 5-methylcytosine-spec 50.0 9.7 0.00025 18.8 1.7 28 42-72 193-220 (459)
430 PRK08233 hypothetical protein; 50.0 17 0.00044 17.0 2.9 19 54-72 11-29 (182)
431 KOG0991 consensus 49.9 6.4 0.00016 20.1 0.8 195 54-289 56-293 (333)
432 pfam03420 Peptidase_U9 Prohead 49.9 11 0.00028 18.4 1.9 28 60-87 120-148 (220)
433 PRK09302 circadian clock prote 49.9 18 0.00046 16.9 3.1 30 221-250 293-322 (501)
434 cd01133 F1-ATPase_beta F1 ATP 49.8 20 0.00051 16.5 5.2 22 52-73 75-96 (274)
435 COG0303 MoeA Molybdopterin bio 49.8 20 0.00051 16.5 5.3 62 220-289 195-262 (404)
436 COG2607 Predicted ATPase (AAA+ 49.8 16 0.0004 17.3 2.7 34 46-82 88-121 (287)
437 COG1158 Rho Transcription term 49.8 20 0.00051 16.5 3.3 33 125-159 250-282 (422)
438 PRK10787 DNA-binding ATP-depen 49.7 20 0.00051 16.5 4.9 38 40-83 345-383 (784)
439 cd06196 FNR_like_1 Ferredoxin 49.7 20 0.00052 16.5 3.4 11 315-325 194-204 (218)
440 cd04102 RabL3 RabL3 (Rab-like3 49.6 11 0.00029 18.3 2.0 22 44-68 1-22 (202)
441 cd01673 dNK Deoxyribonucleosid 49.6 14 0.00036 17.7 2.4 19 49-70 5-23 (193)
442 cd03216 ABC_Carb_Monos_I This 49.5 17 0.00044 17.0 2.9 24 49-72 29-52 (163)
443 KOG0534 consensus 49.0 18 0.00045 16.9 2.9 11 166-176 97-107 (286)
444 PRK08451 DNA polymerase III su 49.0 9.8 0.00025 18.8 1.6 24 46-72 39-62 (523)
445 PRK08727 hypothetical protein; 48.9 18 0.00046 16.9 2.9 34 45-81 43-76 (233)
446 PRK05642 DNA replication initi 48.8 19 0.00049 16.7 3.0 34 45-81 47-80 (234)
447 COG0769 MurE UDP-N-acetylmuram 48.8 21 0.00053 16.4 3.6 41 42-86 89-130 (475)
448 PRK13506 formate--tetrahydrofo 48.7 20 0.00052 16.5 3.2 39 44-82 54-94 (577)
449 cd02033 BchX Chlorophyllide re 48.6 19 0.0005 16.7 3.0 29 54-82 39-67 (329)
450 PRK12608 transcription termina 48.6 21 0.00053 16.4 3.6 183 55-291 141-343 (379)
451 PRK10643 DNA-binding transcrip 48.6 21 0.00053 16.4 4.6 30 116-145 26-55 (222)
452 PRK10926 ferredoxin-NADP reduc 48.4 18 0.00047 16.8 2.9 81 148-244 47-128 (248)
453 cd03223 ABCD_peroxisomal_ALDP 48.3 21 0.00054 16.4 3.8 18 55-72 36-53 (166)
454 COG1208 GCD1 Nucleoside-diphos 48.2 21 0.00054 16.4 3.7 39 40-86 20-58 (358)
455 PRK05580 primosome assembly pr 48.2 21 0.00054 16.4 4.7 28 54-81 194-221 (699)
456 KOG0990 consensus 48.2 8.4 0.00021 19.2 1.1 19 54-72 70-88 (360)
457 PRK07270 DNA polymerase III su 48.1 9.7 0.00025 18.8 1.4 18 55-72 46-63 (557)
458 pfam02702 KdpD Osmosensitive K 48.1 21 0.00054 16.4 5.3 26 54-79 13-38 (211)
459 TIGR00513 accA acetyl-CoA carb 48.0 10 0.00027 18.6 1.6 43 63-114 183-228 (329)
460 cd06221 sulfite_reductase_like 47.9 21 0.00055 16.3 3.2 17 313-329 196-212 (253)
461 PRK13227 consensus 47.7 16 0.0004 17.3 2.5 43 232-282 153-197 (228)
462 cd03811 GT1_WabH_like This fam 47.7 21 0.00054 16.4 3.1 38 47-86 4-41 (353)
463 PRK07004 replicative DNA helic 47.3 21 0.00053 16.4 3.0 27 55-81 222-249 (460)
464 cd00477 FTHFS Formyltetrahydro 47.1 21 0.00054 16.4 3.1 39 44-82 38-78 (524)
465 TIGR01313 therm_gnt_kin carboh 47.0 12 0.00029 18.3 1.7 111 54-176 6-136 (175)
466 PRK13898 type IV secretion sys 47.0 22 0.00056 16.3 3.1 48 39-86 436-486 (800)
467 cd01871 Rac1_like Rac1-like su 46.9 12 0.0003 18.1 1.7 22 44-68 2-23 (174)
468 PRK03839 putative kinase; Prov 46.7 11 0.00028 18.4 1.5 24 55-81 9-32 (180)
469 cd03222 ABC_RNaseL_inhibitor T 46.6 15 0.00037 17.5 2.2 65 54-143 33-98 (177)
470 cd03814 GT1_like_2 This family 46.5 22 0.00057 16.2 3.5 33 54-88 13-45 (364)
471 cd06198 FNR_like_3 NAD(P) bind 46.4 23 0.00058 16.2 3.6 13 226-241 184-196 (216)
472 cd00267 ABC_ATPase ABC (ATP-bi 46.2 15 0.00038 17.4 2.2 75 54-147 33-111 (157)
473 cd06219 DHOD_e_trans_like1 FAD 46.2 23 0.00058 16.2 3.1 29 221-249 96-127 (248)
474 cd02029 PRK_like Phosphoribulo 46.2 21 0.00053 16.4 2.9 27 55-81 8-34 (277)
475 PRK06732 phosphopantothenate-- 46.2 14 0.00035 17.7 2.0 34 45-83 16-49 (228)
476 cd01078 NAD_bind_H4MPT_DH NADP 46.0 23 0.00058 16.1 3.8 29 53-83 33-61 (194)
477 cd01130 VirB11-like_ATPase Typ 46.0 16 0.00041 17.2 2.3 25 55-80 34-58 (186)
478 cd02524 G1P_cytidylyltransfera 46.0 23 0.00058 16.1 4.0 41 39-87 16-56 (253)
479 cd06204 CYPOR NADPH cytochrome 45.9 23 0.00058 16.1 3.6 16 223-238 266-284 (416)
480 cd03221 ABCF_EF-3 ABCF_EF-3 E 45.9 19 0.00048 16.8 2.6 70 52-148 32-102 (144)
481 smart00178 SAR Sar1p-like memb 45.8 16 0.00042 17.2 2.3 38 22-67 1-38 (184)
482 PRK06674 DNA polymerase III su 45.8 11 0.00028 18.4 1.4 18 55-72 47-64 (563)
483 pfam06309 Torsin Torsin. This 45.7 13 0.00034 17.8 1.9 38 41-80 49-87 (127)
484 PRK07263 consensus 45.7 23 0.00059 16.1 3.1 26 56-81 213-239 (453)
485 PRK13229 consensus 45.7 13 0.00032 18.0 1.7 72 233-326 152-225 (234)
486 cd03791 GT1_Glycogen_synthase_ 45.3 22 0.00057 16.2 2.9 33 53-87 14-46 (476)
487 COG1348 NifH Nitrogenase subun 45.2 24 0.0006 16.1 3.1 88 54-141 9-124 (278)
488 PRK13505 formate--tetrahydrofo 45.1 24 0.0006 16.1 3.2 51 229-282 355-407 (556)
489 PRK09581 pleD response regulat 45.0 13 0.00034 17.8 1.8 45 226-270 295-355 (457)
490 KOG2371 consensus 44.9 24 0.00061 16.0 4.8 55 232-290 215-275 (411)
491 PRK10646 putative ATPase; Prov 44.9 9.9 0.00025 18.7 1.1 29 41-72 26-54 (153)
492 cd06183 cyt_b5_reduct_like Cyt 44.8 20 0.0005 16.6 2.6 20 223-243 105-125 (234)
493 pfam06068 TIP49 TIP49 C-termin 44.8 12 0.00031 18.1 1.5 15 56-70 60-74 (395)
494 cd01822 Lysophospholipase_L1_l 44.7 24 0.00061 16.0 4.0 46 44-89 1-49 (177)
495 PRK11083 DNA-binding response 44.7 24 0.00061 16.0 5.7 61 62-162 15-85 (229)
496 cd01537 PBP1_Repressors_Sugar_ 44.6 24 0.00061 16.0 3.7 121 41-161 77-216 (264)
497 TIGR03590 PseG pseudaminic aci 44.6 24 0.00061 16.0 9.8 212 56-289 14-239 (280)
498 pfam02399 Herpes_ori_bp Origin 44.5 23 0.00059 16.1 2.9 26 56-81 59-85 (829)
499 PRK09191 two-component respons 44.5 16 0.00041 17.2 2.1 38 104-141 143-189 (261)
500 COG0702 Predicted nucleoside-d 44.4 24 0.00062 16.0 3.4 30 52-83 4-33 (275)
No 1
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=100.00 E-value=0 Score=701.29 Aligned_cols=313 Identities=35% Similarity=0.591 Sum_probs=272.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHC--CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 8873322488999999999999999999999---7404--6433889889982300078887489999999985247315
Q gi|254780401|r 3 KSPLFWWKARGFYSFFLYPISWIYSFISSKL---MKRG--QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 3 ~~p~fw~~~~~~~~~lL~Pls~iy~~~~~~~---~~~~--~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
..|+||| ++++++++|+|||++|+++..+| |+.+ +++++|+|||||||||||||||||+|+|||++|+++|++|
T Consensus 4 ~~p~fW~-~~~~~~~lL~PlS~ly~~~~~lr~~~y~~~~~~~~~~~vpVI~VGNitvGGtGKTP~v~~la~~l~~~g~~~ 82 (334)
T PRK00652 4 MIPRFWY-GPSPLWRLLLPLSWLYGLVSGLIRLSYRLGLARPYRFPVPVISVGNLTVGGNGKTPVVIWLAEQLQARGVKV 82 (334)
T ss_pred CCHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6434308-998589999999999999999999998605676555899899990888788777999999999999769936
Q ss_pred EEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf 9876045787777558714567887704212332205--76346520122566410245747997183223441230699
Q gi|254780401|r 78 GFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSL 155 (338)
Q Consensus 78 ~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~I 155 (338)
+||||||||+++++..+++.++++.+|||||+|||++ +|||||+||.+|++++.+.++|+|||||||||++|+||+||
T Consensus 83 ~IlSRGYg~~~~~~~~v~~~~~~~~~vGDEpllla~~~~~~v~V~~~R~~~~~~l~~~~~dviIlDDGfQh~~l~rdl~I 162 (334)
T PRK00652 83 GVVSRGYGGKSKGYPLVLPADTTAAEVGDEPVLIAQRTGAPVAVSPDRVKAIKALLALGADIIILDDGLQHYRLHRDFEI 162 (334)
T ss_pred EEEECCCCCCCCCCEEEECCCCCHHHCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE
T ss_conf 78734667656787276179998355186899985178983999566899999999659999997476656644688799
Q ss_pred EEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHC------CCCHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 996184335665537613652100255665145442044124577631------35011122220132111686389874
Q gi|254780401|r 156 IVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIK------NKSVYFAKLKPRLTFDLSGKKVLAFS 229 (338)
Q Consensus 156 vl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~k~v~afs 229 (338)
|++|+.+||||+++||+||||||++ +++|||++|+++...+...... ..+++ .......+++++++|||
T Consensus 163 vlid~~~~fgn~~llP~GpLREp~~-~l~rAD~ii~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~v~afs 237 (334)
T PRK00652 163 VVVDGQRRFGNGWLLPAGPLREPPS-RLKSADAVIVNGGDAQEGEIPMRLAPGAAVNLR----TGESRDVLKGKRVVAFA 237 (334)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCHH-HHCCCCEEEEECCCCCCHHHHHHHCCCCCEECC----CCCCCCCCCCCEEEEEE
T ss_conf 9974776788986775865658964-761468999938854311045553656636766----65546335798189999
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEE
Q ss_conf 15535789998874010000122143323489899999999756479879985466343823334411122051788769
Q gi|254780401|r 230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVD 309 (338)
Q Consensus 230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~ 309 (338)
|||||++|+++|+++|+++++++.|||||+|+++|+++|.+.|+..++.|||||||||||+++.. .++|+++++
T Consensus 238 GIanP~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~------~~i~~lpi~ 311 (334)
T PRK00652 238 GIGHPPRFFATLRNLGIEVVGTVAFPDHQSFTKADLEALVSLAQRQGLSLLMTEKDAVKCRAFAE------PNWWYLPVD 311 (334)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHCCHHHH------CCEEEEEEE
T ss_conf 44886999999997699273425779866689999999999998289938985567765754542------785999999
Q ss_pred EEECC--HHHHHHHHHHHHH
Q ss_conf 89578--7899999999999
Q gi|254780401|r 310 IVFEN--PDDLTNLVEMTVV 327 (338)
Q Consensus 310 ~~~~~--~~~l~~~l~~~i~ 327 (338)
++|++ ++.|.+.|++.+.
T Consensus 312 ~~~~~~~~~~l~~ki~~~~~ 331 (334)
T PRK00652 312 AELSGDEPDKLLEKIDSLIK 331 (334)
T ss_pred EEECHHHHHHHHHHHHHHHH
T ss_conf 99897789999999999986
No 2
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=100.00 E-value=0 Score=668.74 Aligned_cols=301 Identities=41% Similarity=0.692 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HC--CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 999999999999999999974---04--6433889889982300078887489999999985247315987604578777
Q gi|254780401|r 15 YSFFLYPISWIYSFISSKLMK---RG--QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR 89 (338)
Q Consensus 15 ~~~lL~Pls~iy~~~~~~~~~---~~--~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~ 89 (338)
++++|+|||++|+++..+|+. .+ +++++|+|||||||||||||||||+|+||+++|+++|++|+||||||||+++
T Consensus 1 l~~lL~PlS~ly~~~~~lR~~ly~~~~~k~~~~~vpVI~VGNit~GGtGKTP~v~~l~~~l~~~g~~~~ilSRGYg~~~~ 80 (318)
T pfam02606 1 LALLLLPLSLLYGLIAALRRALYRRGILKSYRLPVPVIVVGNITVGGTGKTPLVIALAELLRARGLRPGVLSRGYGGKSK 80 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 93899999999999999999998605556344899999998984588785899999999999769944783267676578
Q ss_pred CCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHCC-CCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 7558714567887704212332205--763465201225664102-4574799718322344123069999618433566
Q gi|254780401|r 90 ISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLLQ-EGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGN 166 (338)
Q Consensus 90 ~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~~-~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn 166 (338)
++..|+ .++++.++||||+|||++ +||+||+||++|++++.+ .++|+|||||||||++|+||+||||+|+.++|||
T Consensus 81 ~~~~v~-~~~~~~~~GDEp~lla~~~~~~v~V~~~R~~a~~~l~~~~~~dviIlDDGfQh~~l~rDl~Ivl~d~~~~fgn 159 (318)
T pfam02606 81 GPVLVD-PGSSAAEVGDEPLLLARRTPVPVVVGPDRAAAARALLEAHGADVIILDDGFQHYRLARDLEIVVVDGARGFGN 159 (318)
T ss_pred CCEEEC-CCCCHHHCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 878971-6889467396999998756985998052899999999848997999148666730018868999728878879
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHH--------CCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 553761365210025566514544204412457763135011122220--------132111686389874155357899
Q gi|254780401|r 167 GLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKP--------RLTFDLSGKKVLAFSGIADTEKFF 238 (338)
Q Consensus 167 ~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~l~~k~v~afsGIa~P~~F~ 238 (338)
|++||+||||||++ +++|||++++++++.+... ....+++.+.+++ ....++++++++||||||||++|+
T Consensus 160 g~lLPaGpLREp~~-~l~raD~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~a~sGIanP~~F~ 237 (318)
T pfam02606 160 GRLLPAGPLREPLS-RLKRADAVILNGGEAADPE-IAEAPVLRARLEPSAAVNLADGERRPLAGKRVLAFAGIGNPQRFF 237 (318)
T ss_pred CCCCCCCCCCCCHH-HHCCCCEEEECCCCCCHHH-HHHCCHHHEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHH
T ss_conf 97785813548965-8700399999398532113-443230114885004474277320001698489999647879999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEECCHHHH
Q ss_conf 98874010000122143323489899999999756479879985466343823334411122051788769895787899
Q gi|254780401|r 239 TTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVFENPDDL 318 (338)
Q Consensus 239 ~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~~~~~~l 318 (338)
++|+++|+++++++.|||||+|+++|+++|.+++++.+ |||||||||||+.+.. ....+|+++++++|+ +.|
T Consensus 238 ~~L~~~g~~i~~~~~f~DHh~y~~~dl~~i~~~a~~~~--iitTEKD~VKl~~~~~----~~~~i~~L~i~~~~~--~~~ 309 (318)
T pfam02606 238 DTLRALGLEVVATLAFPDHHPFTAADLAFLEAEAKEPG--LVTTEKDAVKLRGDNL----FDERLWVLPVEAELE--DAL 309 (318)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCC--EEECCHHHHHCCCCHH----CCCCEEEEEEEEEEC--HHH
T ss_conf 99997698787867778877799999999998656997--5874164644856510----299689999999989--899
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780401|r 319 TNLVEMTV 326 (338)
Q Consensus 319 ~~~l~~~i 326 (338)
.+.|.+++
T Consensus 310 ~~~l~~kl 317 (318)
T pfam02606 310 RELLLKKL 317 (318)
T ss_pred HHHHHHHH
T ss_conf 99999965
No 3
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=100.00 E-value=0 Score=664.70 Aligned_cols=306 Identities=31% Similarity=0.485 Sum_probs=257.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 2488999999999999999999999740-----46433889889982300078887489999999985247315987604
Q gi|254780401|r 9 WKARGFYSFFLYPISWIYSFISSKLMKR-----GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 9 ~~~~~~~~~lL~Pls~iy~~~~~~~~~~-----~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|++++++.++|+|||++|+++..+|+.. .+++++|+|||||||||||||||||+|+||+++|+++|++|+|||||
T Consensus 11 Wy~~~~~~~LL~PlS~lY~~i~~~R~~ly~~g~~~s~~~~vPVI~VGNitvGGTGKTP~v~~La~~L~~~G~~~~IiSRG 90 (332)
T PRK00313 11 WYRGHPALALLRPLEALYRRVVTGRRARFLRGEKASYRAPVPVIVVGNITVGGTGKTPLILWLIEHCRRRGLRVGVVSRG 90 (332)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 73888299999999999999999999998605455455899899987873588777799999999999779965898646
Q ss_pred CCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHCC-CCCCEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 5787777558714567887704212332205--763465201225664102-4574799718322344123069999618
Q gi|254780401|r 84 YGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLLQ-EGVDIIIMDDGFHSADLQADFSLIVVNS 160 (338)
Q Consensus 84 Yg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~~-~~~diiIlDDGfQh~~l~rdl~Ivl~d~ 160 (338)
||++.+..+..++.++++.++||||+|||++ +||+||+||.+|++.+.+ .++|+|||||||||++|+||+|||++|+
T Consensus 91 Yg~~~~~~~~~v~~~~~~~~vGDEpllla~~~~~pV~V~~~R~~a~~~l~~~~~~dviIlDDGfQh~~l~rDl~Ivvid~ 170 (332)
T PRK00313 91 YGARPPQLPWRVTADQDAAEAGDEPLLIVQRTGVPLMIDPDRPRAVQALLAAEPLDLILSDDGLQHYRLARDLELVLIDA 170 (332)
T ss_pred CCCCCCCCCEEECCCCCHHHCCCHHHHHHHCCCCCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCEEEEECC
T ss_conf 56766677355457768455585889998506962998076999999999649998899558531201048806998456
Q ss_pred CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH--CCCCHHH---HHHHHCCCCCC-CCCEEEEEECCCCH
Q ss_conf 433566553761365210025566514544204412457763--1350111---22220132111-68638987415535
Q gi|254780401|r 161 HRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSI--KNKSVYF---AKLKPRLTFDL-SGKKVLAFSGIADT 234 (338)
Q Consensus 161 ~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~~~--~~~~i~~---~~~~~~~~~~l-~~k~v~afsGIa~P 234 (338)
.++||||++||+||||||++ +++|||+++++++..+..... ..++... ...+......+ .|++++||||||||
T Consensus 171 ~~~fGNg~lLPaGpLREp~~-~l~raD~vi~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~v~a~aGIgnP 249 (332)
T PRK00313 171 ARGLGNGRCLPAGPLREPAE-RLAEVDAVLYNGAAADPDDGYAFRLQPSALVNLRSGERRPLDHFPAGQALHAVAGIGNP 249 (332)
T ss_pred CCCCCCCCCCCCCCCCCCHH-HHHCCCEEEECCCCCCCCHHHHHHCCCCCCEECCCCCCCCCCHHCCCCEEEEEECCCCH
T ss_conf 67888988877864558853-76008999997997555645664407674286788562663110248828999815987
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEECC
Q ss_conf 78999887401000012214332348989999999975647987998546634382333441112205178876989578
Q gi|254780401|r 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVFEN 314 (338)
Q Consensus 235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~~~ 314 (338)
++|+++|+++|++++. +.|||||.|+++|++. ..+..|||||||||||..+.. .++|+++|+++++
T Consensus 250 ~~F~~~L~~~g~~~~~-~~FpDHh~ys~~Di~~------~~~~~iltTEKDaVKl~~f~~------~~~w~lpi~~~~~- 315 (332)
T PRK00313 250 QRFFNTLEGLHWRPVP-HPFADHAQYSAQELSF------SPPLPLVMTEKDAVKCRAFAA------ADWWYLAVEAVPS- 315 (332)
T ss_pred HHHHHHHHHCCCEEEE-EECCCCCCCCHHHHCC------CCCCEEEEECHHHHHHHHHCC------CCEEEEEEEEEEC-
T ss_conf 9999999987993766-4689976789999710------889818971278885234067------8879999988708-
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 7899999999999986
Q gi|254780401|r 315 PDDLTNLVEMTVVSFA 330 (338)
Q Consensus 315 ~~~l~~~l~~~i~~~~ 330 (338)
+.|.+.+++.++++.
T Consensus 316 -~~f~~~~~~~l~~l~ 330 (332)
T PRK00313 316 -PAFVAWFDGQLARLL 330 (332)
T ss_pred -HHHHHHHHHHHHHHC
T ss_conf -899999999999860
No 4
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=646.55 Aligned_cols=315 Identities=39% Similarity=0.655 Sum_probs=279.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 873322488999999999999999999999740464--338898899823000788874899999999852473159876
Q gi|254780401|r 4 SPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQR--LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 4 ~p~fw~~~~~~~~~lL~Pls~iy~~~~~~~~~~~~~--~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|.|||.+..+++++|+||||+|+++..+|+..+++ +++|+|||||||+|||||||||+|+||++.|+++|++++|+|
T Consensus 5 i~~~w~~~~~~l~~lL~PlS~ly~~i~~~r~~~~~~g~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 5 IERFWYGPSPWLAFLLLPLSWLYAFIAGLRRKLAKKGSYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS 84 (336)
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 00766076507999999999999999999998732466567887899855777789968899999999986697367980
Q ss_pred ECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCHHHHHHHHCC--CCCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf 04578777755871456788770421233220--5763465201225664102--4574799718322344123069999
Q gi|254780401|r 82 RGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDRKIGVQMLLQ--EGVDIIIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 82 RGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R~~~~~~~~~--~~~diiIlDDGfQh~~l~rdl~Ivl 157 (338)
|||||+.+...++++..+++.++||||+|||+ +.||+|++||+++++.+.+ .++|+|||||||||++|+||++||+
T Consensus 85 RGYgg~~~~~~~~~~~~~~a~~~GDEPlLlA~~t~~pv~v~~~R~~~~~~l~~~~~~~diIi~DDG~Qh~rL~rD~eIvv 164 (336)
T COG1663 85 RGYGGKLKVVPLVDNIHTTAAEVGDEPLLLARRTGAPVAVSPDRKDAAKALLAAHLGCDIIVLDDGLQHYRLHRDFEIVV 164 (336)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCEEEEE
T ss_conf 57688876541025676786772846888755339968986429899999985178989999767431267643646999
Q ss_pred ECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHH-----HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 6184335665537613652100255665145442044124577-----63135011122220132111686389874155
Q gi|254780401|r 158 VNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVIS-----SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIA 232 (338)
Q Consensus 158 ~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa 232 (338)
+|+.++||||++||+||||||+. .++.||+++.++....... .....+++.+..++....++++++++||||||
T Consensus 165 vd~~r~fGng~~lPaGpLRep~~-rl~~ad~ii~~g~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~v~afaGIg 243 (336)
T COG1663 165 VDGQRGFGNGFLLPAGPLREPPK-RLKSADAIITNGGGSRADPIPMRLAPGHAPNLVAPGERSDVADLKGKRVVAFAGIG 243 (336)
T ss_pred EECCCCCCCCCCCCCCCCCCCHH-HHHCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCEECCHHHCCCCEEEEEEECC
T ss_conf 73664687864466876557755-55207489863877666621112043435101056501432325774599998537
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEE
Q ss_conf 35789998874010000122143323489899999999756479879985466343823334411122051788769895
Q gi|254780401|r 233 DTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVF 312 (338)
Q Consensus 233 ~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~ 312 (338)
||++||+||+++|++++.++.|||||.|+.+|++.+.++++. ..++|||||+|||+.+.. +.+.++-+..+++.+
T Consensus 244 ~P~rFf~tL~~~g~~~~~~~~FpDH~~f~~~~l~~l~~~~~~--~~Ll~TeKDaVKl~~~~~---~~~~~l~v~~~~~~~ 318 (336)
T COG1663 244 NPQRFFATLRNLGIQVVETLAFPDHYDFSAADLEDLAKKAQA--DGLLTTEKDAVKLRDFAP---ENVWNLPVLAIELSF 318 (336)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHCC--CEEEEECCCEEECCCCCC---HHHCCCEEEEEECCC
T ss_conf 839999999971765454364886233359889999863013--467861441054565332---010055246776054
Q ss_pred CCHHH-HHHHHHH
Q ss_conf 78789-9999999
Q gi|254780401|r 313 ENPDD-LTNLVEM 324 (338)
Q Consensus 313 ~~~~~-l~~~l~~ 324 (338)
+.++. +...++.
T Consensus 319 e~~~~~i~~~~~~ 331 (336)
T COG1663 319 ELPDAKLLALLKR 331 (336)
T ss_pred CCHHHHHHHHHHH
T ss_conf 3256799999988
No 5
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=100.00 E-value=0 Score=639.41 Aligned_cols=298 Identities=35% Similarity=0.552 Sum_probs=243.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH---H--CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 32248899999999999999999999974---0--464338898899823000788874899999999852473159876
Q gi|254780401|r 7 FWWKARGFYSFFLYPISWIYSFISSKLMK---R--GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 7 fw~~~~~~~~~lL~Pls~iy~~~~~~~~~---~--~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.| +++++++++|+|||++|+++..+|+. . .+++++|+|||||||||||||||||+|+||+++|+++|++|+|||
T Consensus 15 ~W-~~~~~~~~lL~PlS~ly~~i~~lR~~ly~~g~lk~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~G~k~~IlS 93 (339)
T PRK01906 15 EW-QRRGALAWALTPFACVFGLIAALRRAAYARGWKKSVDVGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (339)
T ss_pred HH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87-58986999999999999999999999876144454548999999868876887577999999999997699559985
Q ss_pred ECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHC--CCCCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf 045787777558714567887704212332205--76346520122566410--24574799718322344123069999
Q gi|254780401|r 82 RGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLL--QEGVDIIIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 82 RGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~--~~~~diiIlDDGfQh~~l~rdl~Ivl 157 (338)
||||++++++..|. ..+++.++||||+|+|++ +||+||+||.+|++.+. +.++|+|||||||||++|+||+|||+
T Consensus 94 RGYg~~~~~~~~v~-~~~~~~~vGDEpllla~~~~~pV~V~~~R~~~~~~l~~~~~~~dvIIlDDGfQh~~l~rDl~Ivl 172 (339)
T PRK01906 94 RGYGAKVKAPTAVT-PASRASDAGDEPLLIARRTDAPVWVCPDRVAAAQALLAAHPEVDVIVSDDGLQHYRLARDVEIVV 172 (339)
T ss_pred CCCCCCCCCCEEEC-CCCCHHHCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEE
T ss_conf 46455567766623-78644331768999874359608982569999999997488998899568531333468759999
Q ss_pred ECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH------------HHCCCCCCCCCEE
Q ss_conf 6184335665537613652100255665145442044124577631350111222------------2013211168638
Q gi|254780401|r 158 VNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKL------------KPRLTFDLSGKKV 225 (338)
Q Consensus 158 ~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~l~~k~v 225 (338)
+|+ +++|||++||+||||||+++ + +|++++++......... ..++...+ .......+.++++
T Consensus 173 ~d~-~~~GNg~lLPaGpLREp~~~-~--~da~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~k~v 246 (339)
T PRK01906 173 FDH-RLGGNGFLLPAGPLREPLSR-R--RDATLVNDPYSRALPPW--PDTYALRLAPGDAWHLDDPALRRPLSQFAGERV 246 (339)
T ss_pred ECC-CCCCCCCCCCCCCCCCCHHH-C--CCEEEECCCCCCCCCCC--CCCCEEEECCCCCEECCCHHHCCCHHHHCCCEE
T ss_conf 878-77889854668235698022-7--87699836431236554--451027864542276268010473577379728
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEE
Q ss_conf 98741553578999887401000012214332348989999999975647987998546634382333441112205178
Q gi|254780401|r 226 LAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMV 305 (338)
Q Consensus 226 ~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~ 305 (338)
+||||||||++|+++|+++|+++ .+++|||||+|+++|+.+ ..+..|||||||||||+..... .++|+
T Consensus 247 ~a~aGIgnP~~F~~~L~~~g~~~-~~~~FpDHh~ys~~dl~~------~~~~~iitTEKDaVKl~~~~~~-----~~iw~ 314 (339)
T PRK01906 247 LAAAGIGAPERFFATLRAAGLAP-ATRALPDHYAFADNPFVD------DHADAILITEKDAVKLGASWRD-----ARIWV 314 (339)
T ss_pred EEEECCCCHHHHHHHHHHCCCCE-EEEECCCCCCCCHHHHHH------CCCCEEEECCHHHHCCHHHCCC-----CCEEE
T ss_conf 99974699799999999879913-466589975689988932------8998689843556218335277-----84899
Q ss_pred EEEEEEECCHHHHHHHHHHHH
Q ss_conf 876989578789999999999
Q gi|254780401|r 306 IEVDIVFENPDDLTNLVEMTV 326 (338)
Q Consensus 306 l~i~~~~~~~~~l~~~l~~~i 326 (338)
++++++++ +.|.+.|.+++
T Consensus 315 Lpi~~~l~--~~~~~~l~~kl 333 (339)
T PRK01906 315 VPVEAALD--PRLIALVVEKL 333 (339)
T ss_pred EEEEEEEC--HHHHHHHHHHH
T ss_conf 98899979--89999999997
No 6
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability . This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). ; GO: 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process.
Probab=100.00 E-value=0 Score=402.10 Aligned_cols=306 Identities=33% Similarity=0.511 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCC-EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC---CC
Q ss_conf 9999999999999999999740464-338898-899823000788874899999999852473159876045787---77
Q gi|254780401|r 15 YSFFLYPISWIYSFISSKLMKRGQR-LHAPIP-VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK---SR 89 (338)
Q Consensus 15 ~~~lL~Pls~iy~~~~~~~~~~~~~-~~~~~p-VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~---~~ 89 (338)
++|+..++|.++.++...+....++ ...+.| ||||||+++||+||||+|+||++.|+++|++++|+|||||++ .+
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vGn~~~GG~Gktp~v~wl~~~l~~~g~~~~~~~~gy~~~~~~~~ 80 (342)
T TIGR00682 1 LSWLYGLISGVFRFLYDLGLKLAWRTPYAPVPVVISVGNLSVGGTGKTPVVLWLAELLKDRGLRVGVLSRGYGSKSSKSK 80 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE
T ss_conf 81368899999998888643110367763541367623244257875148787899998569818998535455334512
Q ss_pred CCEEEECCCCCHHHHCCHHHHHHHCC---CCCCCCCHHHHHHHHCC-C-CCCEEEECCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 75587145678877042123322057---63465201225664102-4-5747997183223441230699996184335
Q gi|254780401|r 90 ISFRVDLEKHSAYDVGDEPLLLARRA---VTIVTSDRKIGVQMLLQ-E-GVDIIIMDDGFHSADLQADFSLIVVNSHRGL 164 (338)
Q Consensus 90 ~~~~v~~~~~~~~~vGDEp~lla~~~---pv~V~~~R~~~~~~~~~-~-~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~ 164 (338)
....+.+..|++.++||||+|++++. +|+++++|.++...+.. . .+|++|+||||||++++||++|+++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~Gdep~l~~~~~p~~~v~~~~~~~~~~~~~~~~~p~~~~~~~ddg~~~~~l~~d~~i~~~~~~~~~ 160 (342)
T TIGR00682 81 KYTLVGSKGHTASEVGDEPLLLAKYLPDGPVVASKDRKDAILLALEALPDPDVLILDDGLQHRKLHKDLEIVVVDGQDPF 160 (342)
T ss_pred EEEEEECCCCCHHHCCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCEEEEEEECCCCC
T ss_conf 22232024553212377531200006874168601145678899850788757984064000021134148886153223
Q ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHH-----HHHCCCCHHHHH----------HHHCCCCCCCCCEEEEEE
Q ss_conf 66553761365210025566514544204412457-----763135011122----------220132111686389874
Q gi|254780401|r 165 GNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVI-----SSIKNKSVYFAK----------LKPRLTFDLSGKKVLAFS 229 (338)
Q Consensus 165 gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~-----~~~~~~~i~~~~----------~~~~~~~~l~~k~v~afs 229 (338)
||++++|+|||||++. .++++|++++++...+.. ......+.+... .+......+++..+.+||
T Consensus 161 g~~~~~P~G~lr~~p~-~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 239 (342)
T TIGR00682 161 GNGFLLPAGPLREFPK-RLKSADALIVNGGGNESGQTELDRLDIPPPIFLLPGIAKLVNLSTGERVPLDKLKELGVGAFS 239 (342)
T ss_pred CCCCCCCCCCCCCCHH-HHHHHHEEEEECCCCCCCHHHHHHHCCCCCEEECCHHHHEEECCCCCCCCHHHHCCCCEEEEE
T ss_conf 6730044664200146-541010013434677520123322025654022110211000024433544564166358996
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEE
Q ss_conf 1553578999887401000012214332348989999-999975647987998546634382333441112205178876
Q gi|254780401|r 230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEV 308 (338)
Q Consensus 230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~-~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i 308 (338)
|||+|.+|+.+|++.|+++.++..||||+..+.+.++ ...+.+.+++..++|||||+||+..+... ..|++++
T Consensus 240 G~G~p~~f~~~l~~~g~~~~~~~~~pdh~~~~~~~~~~~~~~~~~~~g~~~~~t~kd~~k~~~~~~~------~~~~~p~ 313 (342)
T TIGR00682 240 GLGNPQRFFATLKNLGIHVLGTYLLPDHYGITKQELEEFCLSLLLEQGQGLLTTEKDAVKLQALAEE------IWWYLPV 313 (342)
T ss_pred ECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCC------EEEECCH
T ss_conf 1588678999998717730012313202356788766788888875486366323133330110111------1331232
Q ss_pred EEEECCHH------HHHHHHHHHHH
Q ss_conf 98957878------99999999999
Q gi|254780401|r 309 DIVFENPD------DLTNLVEMTVV 327 (338)
Q Consensus 309 ~~~~~~~~------~l~~~l~~~i~ 327 (338)
+....+.+ .+..+++....
T Consensus 314 ~~~~~~~~~~~n~~~~~~~~~~~~~ 338 (342)
T TIGR00682 314 DLEREEPEKRCNEPDFWALLDKIFK 338 (342)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 3554101232052478999999999
No 7
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.56 E-value=7.1e-07 Score=69.47 Aligned_cols=235 Identities=20% Similarity=0.221 Sum_probs=140.6
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE--CCCCCC-CCCE-----EEECCCCCHHHHCCHHHHHH
Q ss_conf 388988998230007888748999999998524731598760--457877-7755-----87145678877042123322
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR--GYGRKS-RISF-----RVDLEKHSAYDVGDEPLLLA 112 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR--GYg~~~-~~~~-----~v~~~~~~~~~vGDEp~lla 112 (338)
++..|||-|=- |=-|.|||-+..|+++.|+++||+|+++.- -|++.. +..+ ..+.+.|.+.+---|.++-.
T Consensus 123 ~~ekPviaV~a-trtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~ 201 (449)
T COG2403 123 KLEKPVIAVTA-TRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESY 201 (449)
T ss_pred HHCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHC
T ss_conf 51485599997-23665567888999999986698237995570233773100189773776526422556668878743
Q ss_pred --HCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCC-CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf --0576346520122566410245747997183223-4412306999961843356655376136521002556651454
Q gi|254780401|r 113 --RRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHS-ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI 189 (338)
Q Consensus 113 --~~~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh-~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v 189 (338)
.-+.+..|-+--.-.+...+ ..|+|++|.|=-. +.+..|+-|+++|+.+|--+-.-+| ||+| +.-||++
T Consensus 202 I~tg~~vlAGvdy~~vlke~~~-~aD~IlwdGgnndfPfvkpd~~Ivvvda~rpg~ei~~~p-Ge~~------irlAD~V 273 (449)
T COG2403 202 IPTGGGVLAGVDYGTVLKEGEK-EADFILWDGGNNDFPFVKPDLHIVVVDALRPGEEIGSFP-GELR------IRLADLV 273 (449)
T ss_pred CCCCCCEEEEEEHHHHHHHHHH-HCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHCCCC-CCEE------EEECCEE
T ss_conf 6435534652048999987764-155899948887788525770599933888725652687-7315------3221289
Q ss_pred HHCCCCHHHHHH-----------HCCCCHHHH--HHHHCCCCCCCCCEEEEEECCCCHHHHH-------HHHHH-HCCCC
Q ss_conf 420441245776-----------313501112--2220132111686389874155357899-------98874-01000
Q gi|254780401|r 190 LYVGNKKNVISS-----------IKNKSVYFA--KLKPRLTFDLSGKKVLAFSGIADTEKFF-------TTVRQ-LGALI 248 (338)
Q Consensus 190 i~~~~~~~~~~~-----------~~~~~i~~~--~~~~~~~~~l~~k~v~afsGIa~P~~F~-------~~L~~-~g~~i 248 (338)
|+|+++...... .+...+..+ .+.+..+.++.||+++.++- -|+.-. ..|.. .+.++
T Consensus 274 IItkveea~~~kvrkI~~~I~~iNP~A~Vi~~~~~~~~~~~~~ieGKrvlvved--aPt~thgg~~y~agyla~~~~~~i 351 (449)
T COG2403 274 IITKVEEAMAEKVRKIVRNIEEINPKAEVILAASVFRPDPPEDIEGKRVLVVED--APTSTHGGMPYGAGYLAAKKGGEI 351 (449)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCEEEEEEC--CCCCCCCCHHHHHHHHHHHHCCEE
T ss_conf 996135133678999999998609984699602421137821056747999934--873012651455668888645606
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCC
Q ss_conf 012214332348989999999975647987998546634382
Q gi|254780401|r 249 EQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLH 290 (338)
Q Consensus 249 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~ 290 (338)
+. -|-|.|+...+.+-.++.......+.|+-|-.....
T Consensus 352 ~~----vdPrpynrg~i~~~y~ky~~~~dilp~~gya~aq~~ 389 (449)
T COG2403 352 VG----VDPRPYNRGVIREDYEKYPHDADILPTEGYAPAQDV 389 (449)
T ss_pred EE----ECCCCCCCHHHHHHHHHCCCCCCCCHHCCCCHHHHH
T ss_conf 88----689855346799999866453551112044367889
No 8
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.85 E-value=0.02 Score=37.82 Aligned_cols=202 Identities=17% Similarity=0.202 Sum_probs=107.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC---C
Q ss_conf 899823000788874899999999852473159876045787777558714567887704212332205--76346---5
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV---T 120 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V---~ 120 (338)
+..|| +=|+|||-++.-||.+|+++|++|++++-- .-...|. |-=-.++.. +|++- .
T Consensus 100 im~vG---lqGsGKTTT~aKLA~~~kk~g~kv~lvaaD------------t~RpaA~---eQL~~la~~~~v~~~~~~~~ 161 (433)
T PRK00771 100 ILLVG---LQGSGKTTTAAKLARYFQKKGLKVGVICAD------------TWRPGAY---EQLKQLCEKINVPFYGDPKE 161 (433)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEEECC------------CCCHHHH---HHHHHHHHHCCCCCCCCCCC
T ss_conf 99973---788978999999999999779946785067------------8836899---99999998638873178899
Q ss_pred CCHHHHHHHHCC--CCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHH
Q ss_conf 201225664102--45747997183223--------------44123069999618433566553761365210025566
Q gi|254780401|r 121 SDRKIGVQMLLQ--EGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLS 184 (338)
Q Consensus 121 ~~R~~~~~~~~~--~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ 184 (338)
.|-.+.+..+.+ .+.|+||.|-+=.| ..+.+|--|+++|+.-| ..-+=-| +.++.++
T Consensus 162 ~dp~~i~~~a~~~~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a----~~F~~~~- 234 (433)
T PRK00771 162 KDAVKIVKEGLEKLKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQASEQA----KAFKEAV- 234 (433)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHH----HHHHHHC-
T ss_conf 99999999999984569889997765210409999999999877579768998654422--6789999----9998753-
Q ss_pred HHHHHHHCCCCHHH-------HHHHCCCCHHHHHH--HHCCCCCCCCCEEE-EEECCCCHHHHHHHHHHHCCC----CCC
Q ss_conf 51454420441245-------77631350111222--20132111686389-874155357899988740100----001
Q gi|254780401|r 185 YVDAILYVGNKKNV-------ISSIKNKSVYFAKL--KPRLTFDLSGKKVL-AFSGIADTEKFFTTVRQLGAL----IEQ 250 (338)
Q Consensus 185 rad~vi~~~~~~~~-------~~~~~~~~i~~~~~--~~~~~~~l~~k~v~-afsGIa~P~~F~~~L~~~g~~----i~~ 250 (338)
..+-+|+|+-+.+. .....+.|+.|... +......+...++. =+-|.||...+.+..++..-+ ..+
T Consensus 235 ~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~sLvEk~~~~~~e~~~~~~~ 314 (433)
T PRK00771 235 GIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLKSLLEKAEEVMDEEAEEDVE 314 (433)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88737997256788730542189887899568861787214886680889998708985899999999875599999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2214332348989999999975647
Q gi|254780401|r 251 CYSFGDHAHLSDKKIAYLLDQAQQK 275 (338)
Q Consensus 251 ~~~fpDHh~ys~~dl~~i~~~a~~~ 275 (338)
. +. .-.|+-.|+..=.++.++.
T Consensus 315 k--~~-~g~F~l~Df~~Q~~~i~km 336 (433)
T PRK00771 315 A--MM-KGKFTLKDMYKQLEAMNKM 336 (433)
T ss_pred H--HH-CCCCCHHHHHHHHHHHHHC
T ss_conf 8--75-2885699999999999810
No 9
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.80 E-value=0.012 Score=39.56 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=99.2
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC
Q ss_conf 8898899823000788874899999999852473159876045787777558714567887704212332205--76346
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV 119 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V 119 (338)
.|.-|..|| .=|+|||-++.-||++|+++|++|.+++--- ..-.| -|---.|+.. .|++-
T Consensus 99 ~P~vImmvG---LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~------------~RpAA---~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVG---LQGSGKTTTAGKLAKYLKKKGKKVLLVAADT------------YRPAA---IEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCEEEEEEE---CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC------------CCHHH---HHHHHHHHHHCCCCEEC
T ss_conf 985899981---5679748689999999997499458985056------------78689---99999999860985316
Q ss_pred ---CCCHH----HHHHHHCCCCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHC
Q ss_conf ---52012----2566410245747997183223--------------44123069999618433566553761365210
Q gi|254780401|r 120 ---TSDRK----IGVQMLLQEGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVP 178 (338)
Q Consensus 120 ---~~~R~----~~~~~~~~~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp 178 (338)
..|-+ +|++.+.+.+.|++|.|-+=.| ..+.+|--++|+|+.-|-. |...-+.
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd------A~~~A~a 234 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD------AVNTAKA 234 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH------HHHHHHH
T ss_conf 7788997999999999999749988999688733030999999999985539874899876444567------8999999
Q ss_pred CHHHHHHHHHHHHCCCCHH-------HHHHHCCCCHHHHHH--HHCCCCCCCCCEEE-EEECCCCHHHHHHHHHHH
Q ss_conf 0255665145442044124-------577631350111222--20132111686389-874155357899988740
Q gi|254780401|r 179 LSRQLSYVDAILYVGNKKN-------VISSIKNKSVYFAKL--KPRLTFDLSGKKVL-AFSGIADTEKFFTTVRQL 244 (338)
Q Consensus 179 ~~~~l~rad~vi~~~~~~~-------~~~~~~~~~i~~~~~--~~~~~~~l~~k~v~-afsGIa~P~~F~~~L~~~ 244 (338)
++.++. ..-||+|+-+.+ ......+.||.|... +......+...++. =+-|.||=.++.+..++.
T Consensus 235 F~e~l~-itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~ 309 (451)
T COG0541 235 FNEALG-ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEV 309 (451)
T ss_pred HHHHCC-CCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 866269-864999714678762288856998789859974588735477749588999853732099999999986
No 10
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.77 E-value=0.0076 Score=40.88 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=42.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEC-CCCC--HHHHCCHHHHHHH
Q ss_conf 98899823000788874899999999852473159876045787777558714-5678--8770421233220
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL-EKHS--AYDVGDEPLLLAR 113 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~-~~~~--~~~vGDEp~lla~ 113 (338)
+|||+|-- .-|||||-++..|+..|.++|++|+++-....+ +-++. +.+| -.++|-+..+++.
T Consensus 2 ~Pii~ivG--~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H~-----f~~D~pGkDS~r~r~AGA~~v~v~s 67 (170)
T PRK10751 2 IPLLAIAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD-----MDVDKPGKDSYELRKAGAAQTLVAS 67 (170)
T ss_pred CCEEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCCCCCCCCHHHHHHCCCEEEEEC
T ss_conf 87799994--699999999999999999879849999457778-----8899998410999973266468875
No 11
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=96.74 E-value=0.0067 Score=41.23 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||+|||- =||+|||-+++-|+..|..+|++|.+|=
T Consensus 1 hIIaVaNq-KGGvGKTTtavnLA~aLA~~G~rVllID 36 (261)
T pfam09140 1 HVIVVGNE-KGGSGKSTTAVHVAVALLYLGARVATID 36 (261)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 97999717-8987299999999999998899789997
No 12
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=96.63 E-value=0.0025 Score=44.31 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=35.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
--+..||+|.|. =||+|||-++.-||..|..+|++|.+|=
T Consensus 101 g~~~~VIav~N~-KGGVGKTTtav~LA~~LA~~G~RVLvID 140 (387)
T TIGR03453 101 GEHLQVIAVTNF-KGGSGKTTTSAHLAQYLALRGYRVLAID 140 (387)
T ss_pred CCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 998808999788-8765699999999999997799889995
No 13
>KOG0780 consensus
Probab=96.55 E-value=0.011 Score=39.71 Aligned_cols=194 Identities=19% Similarity=0.227 Sum_probs=109.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCH
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233220--5763465201
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDR 123 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R 123 (338)
|.-|| +-|+|||-++--+|.+++++||+++.+.-- +-...|. |--.+.|. ++|++.+-.-
T Consensus 104 imfVG---LqG~GKTTtc~KlA~y~kkkG~K~~LvcaD------------TFRagAf---DQLkqnA~k~~iP~ygsyte 165 (483)
T KOG0780 104 IMFVG---LQGSGKTTTCTKLAYYYKKKGYKVALVCAD------------TFRAGAF---DQLKQNATKARVPFYGSYTE 165 (483)
T ss_pred EEEEE---CCCCCCCEEHHHHHHHHHHCCCCEEEEEEC------------CCCCCHH---HHHHHHHHHHCCEEEECCCC
T ss_conf 99983---057886300899999998468724577602------------2453068---99998767407706840366
Q ss_pred HH-------HHHHHCCCCCCEEEECCCCCCC--------------CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHH
Q ss_conf 22-------5664102457479971832234--------------41230699996184335665537613652100255
Q gi|254780401|r 124 KI-------GVQMLLQEGVDIIIMDDGFHSA--------------DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQ 182 (338)
Q Consensus 124 ~~-------~~~~~~~~~~diiIlDDGfQh~--------------~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~ 182 (338)
.+ |.....++++|+||.|-.=.|. .+.+|.-|.+.|+.-+-- -|+..++
T Consensus 166 ~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa----------ae~Qa~a 235 (483)
T KOG0780 166 ADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA----------AEAQARA 235 (483)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH----------HHHHHHH
T ss_conf 555899999999888639728998278730124899999999985159873899985620076----------7999998
Q ss_pred HHH---HHHHHHCCCCHHH-----HH--HHCCCCHHH-HHHHH-CCCCCCCCCE-EEEEECCCCHHHHHHHHHHHCCC-C
Q ss_conf 665---1454420441245-----77--631350111-22220-1321116863-89874155357899988740100-0
Q gi|254780401|r 183 LSY---VDAILYVGNKKNV-----IS--SIKNKSVYF-AKLKP-RLTFDLSGKK-VLAFSGIADTEKFFTTVRQLGAL-I 248 (338)
Q Consensus 183 l~r---ad~vi~~~~~~~~-----~~--~~~~~~i~~-~~~~~-~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g~~-i 248 (338)
.+. .-.+|+|+-+-+. ++ .....||.| ...+. .....+..++ +-..-|+|+=+.|++.+.+.+.. -
T Consensus 236 Fk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d~ 315 (483)
T KOG0780 236 FKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDDA 315 (483)
T ss_pred HHHHHCCCEEEEEECCCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 87761540379972256777773453035407987998167551115777807799987156528999999999855208
Q ss_pred CCCCCCCCCCCCCHHHHHH
Q ss_conf 0122143323489899999
Q gi|254780401|r 249 EQCYSFGDHAHLSDKKIAY 267 (338)
Q Consensus 249 ~~~~~fpDHh~ys~~dl~~ 267 (338)
...+.=--|-+|+..|+..
T Consensus 316 ~el~~kl~~gkFtlrd~y~ 334 (483)
T KOG0780 316 KELVEKLKQGKFTLRDFYD 334 (483)
T ss_pred HHHHHHHHHCCCCHHHHHH
T ss_conf 9999998828701999999
No 14
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=96.55 E-value=0.0028 Score=43.89 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=34.8
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+..||+|.|. =||+|||-++.-||..|..+|++|.+|=
T Consensus 120 ~~kVIaVaN~-KGGVGKTTtav~LA~~LA~~G~RVLlID 157 (405)
T PRK13869 120 HLQVIAVTNF-KGGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9828999788-8776599999999999997799889996
No 15
>PHA02518 ParA-like protein; Provisional
Probab=96.49 E-value=0.0094 Score=40.19 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=32.2
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||+|.|- =||+|||-++.-||-.|..+|++|.++-
T Consensus 1 KIIav~n~-KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (211)
T PHA02518 1 KIIAVLNQ-KGGAGKTTVATNLASWLHADGHKVLLVD 36 (211)
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98999808-9997499999999999997899489997
No 16
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.48 E-value=0.0093 Score=40.24 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=31.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+||++-|- =||+|||-++..|+..+.++|.+|.++-
T Consensus 2 ~vi~~~~~-KGG~GKtT~a~~la~~~~~~g~~v~~iD 37 (231)
T PRK13849 2 KLLTFCSF-KGGAGKTTALMGLCAALASDGKRVALFE 37 (231)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 37999618-9987699999999999997899599996
No 17
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.34 E-value=0.013 Score=39.23 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=31.3
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|||++-|- =||+|||-+++.|+..|.++|++|+++-
T Consensus 2 ~vi~~~~~-KGG~GKtT~a~~la~~~~~~g~~V~liD 37 (231)
T pfam07015 2 QLITFCSF-KGGAGKTTALMGLCSALASDGKRVALFE 37 (231)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 37999617-9986599999999999996899599996
No 18
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=96.34 E-value=0.0086 Score=40.49 Aligned_cols=190 Identities=18% Similarity=0.268 Sum_probs=104.7
Q ss_pred CEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHHC--C-----
Q ss_conf 889-982300078887489999999985247315987604578777755871456788770421233-2205--7-----
Q gi|254780401|r 45 PVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LARR--A----- 115 (338)
Q Consensus 45 pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~~--~----- 115 (338)
-|| -|| .=|+|||-++--||-|.+++||||++|.= |+=..-|. |-|- =|.+ .
T Consensus 122 ~ViMfVG---LQGaGKTTtctKLA~YYk~rGfK~~lvCA------------DTFRAGAF----dQLkqNA~kA~iPFYGs 182 (453)
T TIGR01425 122 SVIMFVG---LQGAGKTTTCTKLAYYYKRRGFKPALVCA------------DTFRAGAF----DQLKQNATKAKIPFYGS 182 (453)
T ss_pred EEEEEEE---CCCCCHHHHHHHHHHHHHCCCCCEEEECC------------CCCCCCHH----HHHHHHHHHCCCCCCCC
T ss_conf 1588862---14887156687877776326643256517------------75423248----99987476448971201
Q ss_pred -----CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCC--------------CCCEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf -----634652012256641024574799718322344--------------1230699996184335665537613652
Q gi|254780401|r 116 -----VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSAD--------------LQADFSLIVVNSHRGLGNGLVFPAGPLR 176 (338)
Q Consensus 116 -----pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~--------------l~rdl~Ivl~d~~~~~gn~~llPaGpLR 176 (338)
||.|+ .+|++.-.+++.|+||.|=-=.|++ +.+|.-|-|.|+.=|- . -
T Consensus 183 y~E~DPVkiA---~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMDGsIGQ--A--------A 249 (453)
T TIGR01425 183 YLESDPVKIA---SEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMDGSIGQ--A--------A 249 (453)
T ss_pred CCCCCCEEEE---CCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHH--H--------H
T ss_conf 0489870780---0201132212784799837987322588889987686334998369980661667--8--------8
Q ss_pred HCCHHHH---HHHHHHHHCCCCHH-----HHHHH--CCCCH-HHHHHHH-CCCCCCCCCEEEE-EECCCCHHHHHHHHHH
Q ss_conf 1002556---65145442044124-----57763--13501-1122220-1321116863898-7415535789998874
Q gi|254780401|r 177 VPLSRQL---SYVDAILYVGNKKN-----VISSI--KNKSV-YFAKLKP-RLTFDLSGKKVLA-FSGIADTEKFFTTVRQ 243 (338)
Q Consensus 177 Ep~~~~l---~rad~vi~~~~~~~-----~~~~~--~~~~i-~~~~~~~-~~~~~l~~k~v~a-fsGIa~P~~F~~~L~~ 243 (338)
|.=.+|- ..+-.||+||=+-| .++.+ ..-|| |....+. .....++-+.++- .=|+||=+.+.+..++
T Consensus 250 ~~QAkAFK~~~~vGSvIiTKLDGHAkGGGALSAVAATKsPiiFIGTGEhv~d~E~F~~~~FvskLLGmGDl~GL~~~v~~ 329 (453)
T TIGR01425 250 FSQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDDFEIFDAEPFVSKLLGMGDLKGLIDKVQD 329 (453)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999863003500388751567767623788987535977981377502760578997147754020218899999975
Q ss_pred HCCCCCC----CCCCCCCCCCCHHHHH
Q ss_conf 0100001----2214332348989999
Q gi|254780401|r 244 LGALIEQ----CYSFGDHAHLSDKKIA 266 (338)
Q Consensus 244 ~g~~i~~----~~~fpDHh~ys~~dl~ 266 (338)
+..+=.+ .+.==-|-.||..|+.
T Consensus 330 l~~~~~~~hk~li~~L~eG~fTlRd~~ 356 (453)
T TIGR01425 330 LKLDDEEKHKELIEKLKEGTFTLRDLY 356 (453)
T ss_pred HCHHCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 142103107999999835961068899
No 19
>PRK10416 cell division protein FtsY; Provisional
Probab=96.32 E-value=0.011 Score=39.74 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=47.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HHC--CCCCCCCC
Q ss_conf 899823000788874899999999852473159876045787777558714567887704212332-205--76346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-ARR--AVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~~--~pv~V~~~ 122 (338)
|+.|| |-|+|||-++--||.+|+++|++|.+.+- ++.+-..=|-|.. +.+ +|++-...
T Consensus 298 Il~vG---vNG~GKTTTigKLA~~~~~~gkkVllaA~----------------DTfRaAAieQL~~w~~r~~v~vi~~~~ 358 (499)
T PRK10416 298 ILMVG---VNGVGKTTTIGKLARQFEQQGKSVMLAAG----------------DTFRAAAVEQLQVWGQRNNIPVIAQHT 358 (499)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEEEE----------------CCCCHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99974---78787898999999999977995378840----------------667568999999984245736983689
Q ss_pred ---H----HHHHHHHCCCCCCEEEECCC
Q ss_conf ---1----22566410245747997183
Q gi|254780401|r 123 ---R----KIGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 123 ---R----~~~~~~~~~~~~diiIlDDG 143 (338)
- +.|+..+...+.|++|.|-+
T Consensus 359 g~Dpa~V~~dai~~a~~~~~DvviiDTA 386 (499)
T PRK10416 359 GADSASVIFDAIQAAKARNVDVLIADTA 386 (499)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9997999999999999729998998577
No 20
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.24 E-value=0.011 Score=39.68 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=26.2
Q ss_pred EEECCC-CCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 000788-8748999999998524731598760457
Q gi|254780401|r 52 FVMGGT-GKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGt-GKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|+.||| |-.==.+.|++.|+++|+++..++...|
T Consensus 4 i~~GGTGGHi~Palala~~L~~~g~~V~~i~~~~g 38 (350)
T cd03785 4 IAGGGTGGHIFPALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 99478589999999999999978798999987836
No 21
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=96.15 E-value=0.014 Score=39.01 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=35.6
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
--+..||+|-|. =||+|||-++.-||..|..+|++|.+|=
T Consensus 103 g~~~~VIAVaNq-KGGvGKTTTavnLA~~LAl~G~RVLlID 142 (388)
T PRK13705 103 DEFPPVIGVAAH-KGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 998728999527-8885599999999999997799089995
No 22
>PRK10867 signal recognition particle protein; Provisional
Probab=96.15 E-value=0.016 Score=38.59 Aligned_cols=204 Identities=16% Similarity=0.177 Sum_probs=106.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEE-CCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC--
Q ss_conf 8998230007888748999999998524-731598760-45787777558714567887704212332205--76346--
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSR-GYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV-- 119 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsR-GYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V-- 119 (338)
+..|| +=|+|||-++.-||.+|+++ +++|.+++= -|+ ..|. |-=-.++.+ +|++-
T Consensus 103 Im~vG---LqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~R-------------paA~---eQL~~la~~~~v~~~~~~ 163 (453)
T PRK10867 103 VLMAG---LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR-------------PAAI---KQLETLAEQVGVDFFPSD 163 (453)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-------------HHHH---HHHHHHHHHCCCCEECCC
T ss_conf 99974---6888518589999999997389837985588770-------------5899---999999985198043678
Q ss_pred -CCCHHH----HHHHHCCCCCCEEEECCCCC--------------CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCH
Q ss_conf -520122----56641024574799718322--------------34412306999961843356655376136521002
Q gi|254780401|r 120 -TSDRKI----GVQMLLQEGVDIIIMDDGFH--------------SADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS 180 (338)
Q Consensus 120 -~~~R~~----~~~~~~~~~~diiIlDDGfQ--------------h~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~ 180 (338)
+.|-.. |++++...+.|+||.|-+=. +..+.+|--|+++|+.-| ..-+=-| +.++
T Consensus 164 ~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a----~~F~ 237 (453)
T PRK10867 164 VGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAANTA----KAFN 237 (453)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHH----HHHH
T ss_conf 899889999999999997799999997876012108889999999876378713797432235--6689999----9999
Q ss_pred HHHHHHHHHHHCCCCHHH-------HHHHCCCCHHHHHH-H-HCCCCCCCCCEEE-EEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 556651454420441245-------77631350111222-2-0132111686389-874155357899988740100001
Q gi|254780401|r 181 RQLSYVDAILYVGNKKNV-------ISSIKNKSVYFAKL-K-PRLTFDLSGKKVL-AFSGIADTEKFFTTVRQLGALIEQ 250 (338)
Q Consensus 181 ~~l~rad~vi~~~~~~~~-------~~~~~~~~i~~~~~-~-~~~~~~l~~k~v~-afsGIa~P~~F~~~L~~~g~~i~~ 250 (338)
.++ -.+-+|+|+-+.+. .....+.||.|... + ......+...++. =+-|.||...+.+..++. +.-.+
T Consensus 238 ~~~-~~~gvIlTKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~~Lvek~~~~-~d~~~ 315 (453)
T PRK10867 238 EAL-PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDIESK-VDRAQ 315 (453)
T ss_pred HHC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH-HHHHH
T ss_conf 855-9870787504678761389899999786967886699824588768489999861898789999999987-50889
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf ----22143323489899999999756479
Q gi|254780401|r 251 ----CYSFGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 251 ----~~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
...+.....|+-.|+..-.+..++.+
T Consensus 316 ~~~~~~k~~~g~~F~l~D~~~Q~~~i~kmG 345 (453)
T PRK10867 316 AEKLASKLKKGDGFDLNDFLEQLKQMKNMG 345 (453)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999987069856999999999997457
No 23
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.12 E-value=0.012 Score=39.55 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCCH-------H
Q ss_conf 78887489999999985247315987604578777755871456788770421233-220--5763465201-------2
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSDR-------K 124 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~R-------~ 124 (338)
-|.|||-++.-||.+++++|.+|+++|= ++..-.+=|.+. +++ .+|++...+. .
T Consensus 10 tGvGKTTTiaKLAa~~~~~~~~V~lit~----------------Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~ 73 (196)
T pfam00448 10 QGSGKTTTIAKLAAYLKKQGKKVLLVAA----------------DTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAF 73 (196)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEC----------------CCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf 9998899999999999977992899975----------------877688999999999863981781487778789999
Q ss_pred HHHHHHCCCCCCEEEECCC
Q ss_conf 2566410245747997183
Q gi|254780401|r 125 IGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 125 ~~~~~~~~~~~diiIlDDG 143 (338)
++.+.+...+.|+|+.|=.
T Consensus 74 ~~l~~~~~~~~D~IlIDTa 92 (196)
T pfam00448 74 DAVEKAKAENYDVVLVDTA 92 (196)
T ss_pred HHHHHHHHCCCCEEEEECC
T ss_conf 9999988468999999899
No 24
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.017 Score=38.41 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=44.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCCHHH---HH
Q ss_conf 078887489999999985247315987604578777755871456788770421233-220--576346520122---56
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSDRKI---GV 127 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~R~~---~~ 127 (338)
+-|+|||-++.-||.+++++|++|++++ .++..-..=|-+- +++ .+||+++.+... ++
T Consensus 214 vnGvGKTTTiAKLA~~l~~~gkkV~LVA----------------aDTFRaAAiEQLk~~g~rlgVpV~~~~dpa~l~~av 277 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFIT----------------TDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV 277 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE----------------CCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHH
T ss_conf 9989789999999999997799179997----------------066778899999999999796499818889999999
Q ss_pred HHHC-CCCCCEEEECCC
Q ss_conf 6410-245747997183
Q gi|254780401|r 128 QMLL-QEGVDIIIMDDG 143 (338)
Q Consensus 128 ~~~~-~~~~diiIlDDG 143 (338)
..+. ..+.|+||.|-+
T Consensus 278 ~~~a~~~~~DvVIIDTA 294 (407)
T PRK12726 278 QYMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHHHCCCCCEEEEECC
T ss_conf 99986289998999699
No 25
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=95.75 E-value=0.026 Score=37.07 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=34.2
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+.-||+|-|. =||.|||-++.-||..|..+|++|.+|=
T Consensus 105 ~~~VIAVaN~-KGGVGKTTTavnLA~~LAl~G~RVL~ID 142 (387)
T PHA02519 105 NPVVLAVMSH-KGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCEEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7528998616-8877699999999999997699689995
No 26
>PRK08116 hypothetical protein; Validated
Probab=95.57 E-value=0.047 Score=35.24 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-+.-.+-.|+. |||||=++.++|+.|.++|++|..++
T Consensus 106 ~~~~GLll~G~~---GtGKThLa~aIa~~l~~~g~~V~~~~ 143 (262)
T PRK08116 106 KESVGLLLWGSP---GNGKTYLAAAIANELIEKGVPVVFVN 143 (262)
T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 468618998989---99899999999999998799399988
No 27
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=95.54 E-value=0.029 Score=36.75 Aligned_cols=209 Identities=19% Similarity=0.241 Sum_probs=110.1
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHH--HHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHHC--
Q ss_conf 338898899823000788874899999999--8524731598760457877775587145678877042123-32205--
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKA--VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLARR-- 114 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~--l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~~-- 114 (338)
.+.|..|.-|| .=|||||-++--||.+ +++.|.||-.+|==--| -.| =|-| .|.++
T Consensus 99 ~~~P~vilmvG---LQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yR------------PAA----~~QL~~Lg~Q~g 159 (439)
T TIGR00959 99 EKRPTVILMVG---LQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYR------------PAA----IEQLKVLGEQVG 159 (439)
T ss_pred CCCCEEEEEEC---CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCC------------HHH----HHHHHHHHHHCC
T ss_conf 78683899731---37885788999999999998638970340321034------------789----999999767528
Q ss_pred CCCCC-C---CC---H----HHHHHHHCCCCCCEEEECCC---------CC-----CCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 76346-5---20---1----22566410245747997183---------22-----344123069999618433566553
Q gi|254780401|r 115 AVTIV-T---SD---R----KIGVQMLLQEGVDIIIMDDG---------FH-----SADLQADFSLIVVNSHRGLGNGLV 169 (338)
Q Consensus 115 ~pv~V-~---~~---R----~~~~~~~~~~~~diiIlDDG---------fQ-----h~~l~rdl~Ivl~d~~~~~gn~~l 169 (338)
+||+- - .+ - .+|..+|...++|+||+|=+ ++ -..+.+|=-|+|+||--|-- =+
T Consensus 160 Vpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~EiLlVvDaM~GQd--Av 237 (439)
T TIGR00959 160 VPVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEILLVVDAMTGQD--AV 237 (439)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCCHHH--HH
T ss_conf 8711004788898877899999999999748978997267512555999999999988868870541220102169--99
Q ss_pred CCCHHHHHCCHHHHHHHHHHHHCCCCHHH-------HHHHCCCCHHHHHH--HHCCCCCCCCCEEE-EEECCCCHHHHHH
Q ss_conf 76136521002556651454420441245-------77631350111222--20132111686389-8741553578999
Q gi|254780401|r 170 FPAGPLRVPLSRQLSYVDAILYVGNKKNV-------ISSIKNKSVYFAKL--KPRLTFDLSGKKVL-AFSGIADTEKFFT 239 (338)
Q Consensus 170 lPaGpLREp~~~~l~rad~vi~~~~~~~~-------~~~~~~~~i~~~~~--~~~~~~~l~~k~v~-afsGIa~P~~F~~ 239 (338)
==| + -++..|. ..-+|+|+=+.+. ..++.++||.|... +...+.++...++. =+=|.||=-++.+
T Consensus 238 n~A---~-~F~e~lg-ltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~dLe~FhP~R~A~RILGMGDv~SLvE 312 (439)
T TIGR00959 238 NTA---K-TFNERLG-LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIEDLEPFHPDRMASRILGMGDVLSLVE 312 (439)
T ss_pred HHH---H-HHCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 999---8-6366001-3547885475660578999999996896188841777233124674789863236552236999
Q ss_pred HHHH----HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8874----010000122143323489899999999756479
Q gi|254780401|r 240 TVRQ----LGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 240 ~L~~----~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
=..+ ..+.-. ..... +-.|+-+|+-.=.++.++.|
T Consensus 313 KA~~~~D~~~a~~~-~~K~~-~~~FdleDfl~Ql~~~~KMG 351 (439)
T TIGR00959 313 KAQEVVDEEEAKKL-AEKML-KGQFDLEDFLEQLRQIKKMG 351 (439)
T ss_pred HHHHHCCHHHHHHH-HHHHH-CCCCCHHHHHHHHHHHHHCC
T ss_conf 99985188999999-99863-05889899999999997227
No 28
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.36 E-value=0.033 Score=36.31 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=48.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~ 122 (338)
|..|| .=|+|||-++.-||.+++++|++|++++=- +.+-..=|-+- +++ .+|+++..+
T Consensus 78 I~lvG---~~G~GKTTT~AKLA~~~~~~~~kV~lia~D----------------tyR~aA~eQLk~~a~~l~v~~~~~~~ 138 (270)
T PRK06731 78 IALIG---PTGVGKTTTLAKMAWQFHGKKKTVGFITTD----------------HSRIGTVQQLQDYVKTIGFEVIAVRD 138 (270)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCEEEEEEEC----------------CCCHHHHHHHHHHHHHHCCCEECCCC
T ss_conf 99988---898988999999999998679908999838----------------88888999999999981995354588
Q ss_pred HHHHHHHH---C-CCCCCEEEECCC
Q ss_conf 12256641---0-245747997183
Q gi|254780401|r 123 RKIGVQML---L-QEGVDIIIMDDG 143 (338)
Q Consensus 123 R~~~~~~~---~-~~~~diiIlDDG 143 (338)
...-...+ . +.++|+||.|-+
T Consensus 139 ~~~~~~~~~~~~~~~~~DvilIDTA 163 (270)
T PRK06731 139 EAAMTRALTYFKEEARVDYILIDTA 163 (270)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7899999999999769999999799
No 29
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.36 E-value=0.031 Score=36.56 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|.|||-++.-||.++.++|++|++++
T Consensus 9 tGvGKTTTiaKLA~~~~~~~~kV~lit 35 (173)
T cd03115 9 QGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999889999999999997699289997
No 30
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=95.31 E-value=0.028 Score=36.84 Aligned_cols=56 Identities=34% Similarity=0.457 Sum_probs=41.7
Q ss_pred HHHHHHHHH--HHHHHHC-CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 999999999--9997404-64338898899823000788874899999999852473159876045
Q gi|254780401|r 22 ISWIYSFIS--SKLMKRG-QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 22 ls~iy~~~~--~~~~~~~-~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.=||+|+. ..|...+ +..+-....|==||- |||||-++.-|++.|++.| |||+|+
T Consensus 18 i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNP---GTGKTTVAR~~gklf~emn----vL~KGH 76 (261)
T TIGR02881 18 IKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNP---GTGKTTVARLLGKLFKEMN----VLSKGH 76 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC---CCCHHHHHHHHHHHHHHCC----CCCCCC
T ss_conf 9999999999888875101148844787742786---6843899999999985337----567886
No 31
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.08 E-value=0.055 Score=34.75 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=44.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HC--CCCCC---CCCH----
Q ss_conf 07888748999999998524731598760457877775587145678877042123322-05--76346---5201----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RR--AVTIV---TSDR---- 123 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~--~pv~V---~~~R---- 123 (338)
|-|+|||-+..-||.+|+++|++|.+.. .++-+-..=|-+-.. ++ ++|+- +.|-
T Consensus 147 VNG~GKTTTIaKLA~~l~~~g~~VllaA----------------~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 147 VNGVGKTTTIAKLAKYLKQQGKSVLLAA----------------GDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE----------------CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHH
T ss_conf 4888637179999999997898699982----------------334789999999999999599278259999808999
Q ss_pred HHHHHHHCCCCCCEEEECCC
Q ss_conf 22566410245747997183
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIlDDG 143 (338)
+.|++.+...+.|++|.|-+
T Consensus 211 fDAi~~Akar~~DvvliDTA 230 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTA 230 (340)
T ss_pred HHHHHHHHHCCCCEEEEECC
T ss_conf 99999999769999999675
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.96 E-value=0.37 Score=28.88 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=92.4
Q ss_pred CEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHHCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC
Q ss_conf 55871456788770421233220576----346520122566410245747997183-----2-2344123069999618
Q gi|254780401|r 91 SFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQMLLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS 160 (338)
Q Consensus 91 ~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~ 160 (338)
.+++.+...-+.++.++...+++... ++++......-...++.++||||.-=| + |+.---.+++++++|-
T Consensus 78 aLIL~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlDE 157 (457)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (457)
T ss_pred EEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 99976879999999999997425589459999799777599998618999899892888988862677657523999837
Q ss_pred CCCCCCCCCCCCHHHHHCCHHHHH----HHHHHHHCCC-CHH---HHHHHCCCCHH------------------HHHH--
Q ss_conf 433566553761365210025566----5145442044-124---57763135011------------------1222--
Q gi|254780401|r 161 HRGLGNGLVFPAGPLRVPLSRQLS----YVDAILYVGN-KKN---VISSIKNKSVY------------------FAKL-- 212 (338)
Q Consensus 161 ~~~~gn~~llPaGpLREp~~~~l~----rad~vi~~~~-~~~---~~~~~~~~~i~------------------~~~~-- 212 (338)
- +++|-.|-..+ +.+-++ ....++++-. +.+ ........|+. +..-
T Consensus 158 A-----D~mLd~gF~~d-i~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~ 231 (457)
T PRK10590 158 A-----DRMLDMGFIHD-IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR 231 (457)
T ss_pred C-----HHHHCCCCHHH-HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHH
T ss_conf 0-----56515665366-89998638765268999504888999999997689889996367665613048999956678
Q ss_pred HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 201----32111686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 213 KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 213 ~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
+.. .......++++.|| -...-+...+.|++.|+.... =|..-+..+=...++..++... .+|||.=
T Consensus 232 k~~~L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~-----lHg~~sq~~R~~~l~~F~~g~~~vLVaTDv 304 (457)
T PRK10590 232 KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAA-----IHGNKSQGARTRALADFKSGDIRVLVATDI 304 (457)
T ss_pred HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEE-----EECCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 9999999986158663358841199999999998556998232-----324789999999999998699829995770
No 33
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=94.76 E-value=0.025 Score=37.23 Aligned_cols=98 Identities=22% Similarity=0.427 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCEEEECCC-CC--HHHHCCHHHHHHHCCCCCCCCCHH----HH
Q ss_conf 78887489999999985247315987604-578777755871456-78--877042123322057634652012----25
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG-YGRKSRISFRVDLEK-HS--AYDVGDEPLLLARRAVTIVTSDRK----IG 126 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG-Yg~~~~~~~~v~~~~-~~--~~~vGDEp~lla~~~pv~V~~~R~----~~ 126 (338)
=+||||-++..|++.|+++||+|++|-.- +|-- .+.++... ++ -.++|=|..+++..--.++...+. ..
T Consensus 8 k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H---~~~~d~~GkDs~rhr~AGA~~v~~~~~~~~~~~~~~~g~~e~~ 84 (165)
T TIGR00176 8 KNSGKTTLIERLVKALKARGYRVATIKHDGHGHH---DFDIDKEGKDSYRHREAGADAVIVASSERYAVMTETQGEEELD 84 (165)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCEECCCCCCCHHHHHCCCCEEEEECCCEEEEEEECCCCCCCC
T ss_conf 5886789999999999707995089860898887---5652799873133210436278866790689987528999878
Q ss_pred HHHHCC----CCCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf 664102----4574799718322344123069999
Q gi|254780401|r 127 VQMLLQ----EGVDIIIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 127 ~~~~~~----~~~diiIlDDGfQh~~l~rdl~Ivl 157 (338)
...++. .++|++|-- ||-+-.+.| +.+.-
T Consensus 85 L~~~l~~~~~~~~D~~LvE-GfK~~~~pK-i~~~r 117 (165)
T TIGR00176 85 LEALLKRLADRELDIILVE-GFKDSPLPK-IVVIR 117 (165)
T ss_pred HHHHHHHCCCCCCCEEEEE-CCCCCCCCE-EEEEE
T ss_conf 7999864285526878985-245578874-89972
No 34
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.56 E-value=0.04 Score=35.76 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=30.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
||+++|. =||+|||-++..||..|.++|+++.++-
T Consensus 1 vi~~~n~-KGGvGKtt~~~~la~~~a~~g~~vl~iD 35 (104)
T cd02042 1 VIAVANQ-KGGVGKTTTAVNLAAALARRGKRVLLID 35 (104)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999738-9987689999999999997799299997
No 35
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=94.51 E-value=0.034 Score=36.21 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
||.|||-++..+|-.|.++|+|+.++|=
T Consensus 9 GGVGKTT~AaalA~~lA~~G~kVLlvst 36 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8554899999999999968994999958
No 36
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=94.46 E-value=0.049 Score=35.11 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+||+|-|. -||.|||-++.-|+..|.+.|++|.+|=
T Consensus 2 kiIai~s~-KGGVGKTT~t~nLa~aLa~~G~rVLlID 37 (244)
T pfam06564 2 AVLALQGV-RGGVGTTSLTAALGWALQQLGESVLVID 37 (244)
T ss_pred EEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 29999669-9986199999999999997799589996
No 37
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.45 E-value=0.051 Score=35.00 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=31.5
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||+|-|- =||+|||-++.-||-.|.++|++|.+|=
T Consensus 2 kiIav~n~-KGGVGKTT~avNLA~~La~~G~rVLlID 37 (246)
T TIGR03371 2 KVIAIVGI-KGGVGRTTLTAALASALKLLGEPVLAID 37 (246)
T ss_pred EEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 39999759-9985499999999999996899789997
No 38
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.39 E-value=0.065 Score=34.24 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 88874899999999852473159876045787777558714567887704212332205763465201225664102457
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGV 135 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~~~ 135 (338)
|||||-+...++.|+.+ ...-.||+ ...|+.++.. +--.|+.++---+=+.+=..|.+++++.+|
T Consensus 137 GSGKSTTlAsmIDyIN~-~~~~HIiT------IEDPIEyvh~--------~~~sli~QREvG~DT~sF~~ALraALReDP 201 (350)
T TIGR01420 137 GSGKSTTLASMIDYINK-NKAGHIIT------IEDPIEYVHK--------NKRSLINQREVGLDTLSFANALRAALREDP 201 (350)
T ss_pred CCCHHHHHHHHHHHHHC-CCCCCCEE------EECCEEEEEC--------CCEEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 98678999999978740-38888256------3177314104--------770245436246754579999768410289
Q ss_pred CEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH---HHHHHCCCCHH
Q ss_conf 479971832234412306999961843356655376136521002556651---45442044124
Q gi|254780401|r 136 DIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV---DAILYVGNKKN 197 (338)
Q Consensus 136 diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra---d~vi~~~~~~~ 197 (338)
|||+.=- + || ||.+..||.-| |+|+-|=+.++
T Consensus 202 DvILiGE-~------RD-----------------------~ET~~~AL~AAETGHLV~gTLHTns 236 (350)
T TIGR01420 202 DVILIGE-M------RD-----------------------LETVELALTAAETGHLVFGTLHTNS 236 (350)
T ss_pred CEEEEEC-C------CC-----------------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 8899825-5------62-----------------------7899999987421315676666423
No 39
>KOG0342 consensus
Probab=94.23 E-value=0.57 Score=27.56 Aligned_cols=222 Identities=17% Similarity=0.173 Sum_probs=107.5
Q ss_pred ECCCCCC-----HHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHHC----CCCCCCC
Q ss_conf 0788874-----8999999998524--731598760457877775587145678877042123-32205----7634652
Q gi|254780401|r 54 MGGTGKT-----PTALAIAKAVIDK--NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLARR----AVTIVTS 121 (338)
Q Consensus 54 vGGtGKT-----P~v~~l~~~l~~~--g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~~----~pv~V~~ 121 (338)
-+||||| |.+.++.+.--.. |..+ +++.+...-|.+.--|+- |++.+ +++++|.
T Consensus 127 KTGtGKTlAFLiPaie~l~k~~~~~r~~~~v--------------lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG 192 (543)
T KOG0342 127 KTGTGKTLAFLLPAIELLRKLKFKPRNGTGV--------------LIICPTRELAMQIFAEAKELLKYHESITVGIVIGG 192 (543)
T ss_pred CCCCCCEEEEHHHHHHHHHHCCCCCCCCEEE--------------EEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 2688741010468999998536577787148--------------99656289999899999999972767734787677
Q ss_pred CHHH-HHHHHCCCCCCEEEE-----CCCCCCCC--CCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH------------
Q ss_conf 0122-566410245747997-----18322344--123069999618433566553761365210025------------
Q gi|254780401|r 122 DRKI-GVQMLLQEGVDIIIM-----DDGFHSAD--LQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR------------ 181 (338)
Q Consensus 122 ~R~~-~~~~~~~~~~diiIl-----DDGfQh~~--l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~------------ 181 (338)
++.. .+..+.+ +++++|- +|-+|+.+ +.|++..+++|-. +++|-.|-=+| +.+
T Consensus 193 ~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA-----DrlLd~GF~~d-i~~Ii~~lpk~rqt~ 265 (543)
T KOG0342 193 NNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA-----DRLLDIGFEED-VEQIIKILPKQRQTL 265 (543)
T ss_pred CCCHHHHHHHHC-CCCEEEECCCHHHHHHHCCCCCHHHCCCEEEEECC-----HHHHHCCCHHH-HHHHHHHCCCCCCEE
T ss_conf 410589997515-55278867841776765578412212203575020-----35665251888-999987523553046
Q ss_pred ----------------HHHHHHHHHHCCCCHHH---HHHHCCCCHHH-----HHHHHC-CCCCCCCCEEEEEECCCCHHH
Q ss_conf ----------------56651454420441245---77631350111-----222201-321116863898741553578
Q gi|254780401|r 182 ----------------QLSYVDAILYVGNKKNV---ISSIKNKSVYF-----AKLKPR-LTFDLSGKKVLAFSGIADTEK 236 (338)
Q Consensus 182 ----------------~l~rad~vi~~~~~~~~---~~~~~~~~i~~-----~~~~~~-~~~~l~~k~v~afsGIa~P~~ 236 (338)
+|++ |.+.++..+... .+.....-+.. ..+-.. .....+.+++++||.=+.--+
T Consensus 266 LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk 344 (543)
T KOG0342 266 LFSATQPSKVKDLARGALKR-DPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVK 344 (543)
T ss_pred EEECCCCHHHHHHHHHHHCC-CCEEEECCCCCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 76478968899999876337-74686247899730232466407962654117999999997347724999933026799
Q ss_pred HHHHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEEE
Q ss_conf 9998874-0100001221433234898999999997564-798799854663438233344111220517887698
Q gi|254780401|r 237 FFTTVRQ-LGALIEQCYSFGDHAHLSDKKIAYLLDQAQQ-KGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDI 310 (338)
Q Consensus 237 F~~~L~~-~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~-~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~ 310 (338)
|...|-+ ..+.+ +.=|-.-+..--.....+..+ ..-+++||.=-|== .+++..-|++++..
T Consensus 345 ~~~~lL~~~dlpv-----~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARG--------lD~P~V~~VvQ~~~ 407 (543)
T KOG0342 345 FHAELLNYIDLPV-----LEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARG--------LDIPDVDWVVQYDP 407 (543)
T ss_pred HHHHHHHHCCCCH-----HHHHCCCCCCCCCHHHHHHHHCCCCEEEECCHHHCC--------CCCCCCEEEEEECC
T ss_conf 9999985068753-----244257853220238998861066439960322136--------88888407998589
No 40
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.079 Score=33.62 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHH----HHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCCHHHHH
Q ss_conf 7888748999999998----52473159876045787777558714567887704212332-20--57634652012256
Q gi|254780401|r 55 GGTGKTPTALAIAKAV----IDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSDRKIGV 127 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l----~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~R~~~~ 127 (338)
-|.|||-+..-||.++ ++++++|++++= ++.+-.+=|-+-. |. .+|+.|..+..+-.
T Consensus 183 TGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~----------------DtyRigAveQLktya~il~vp~~v~~~~~dl~ 246 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITI----------------DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK 246 (388)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEE----------------CCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 88757879999999999862676773799980----------------78758899999999999788069857889999
Q ss_pred HHHCC-CCCCEEEECCC
Q ss_conf 64102-45747997183
Q gi|254780401|r 128 QMLLQ-EGVDIIIMDDG 143 (338)
Q Consensus 128 ~~~~~-~~~diiIlDDG 143 (338)
..+.+ .++|+|+.|-+
T Consensus 247 ~~l~~~~~~D~IlIDTA 263 (388)
T PRK12723 247 EEITQSKDFDLVLIDTI 263 (388)
T ss_pred HHHHHHCCCCEEEEECC
T ss_conf 99997249999999589
No 41
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=94.20 E-value=0.17 Score=31.34 Aligned_cols=125 Identities=20% Similarity=0.299 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC---H-HHHHHHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576346520---1-2256641
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD---R-KIGVQML 130 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~---R-~~~~~~~ 130 (338)
=|+|||-+...+.+.. +.|++++||--=+|.-. +|. .-....|.+...+.. -++|-. - ..+...+
T Consensus 9 LGsGKTTll~~ll~~~-~~~~~~avI~Ne~g~~~-----iD~--~ll~~~~~~v~el~~---GciCc~~~~d~~~~l~~l 77 (174)
T pfam02492 9 LGSGKTTLLEHLLRDN-REGLKIAVIVNDFGETG-----IDA--ELLRETGAEIVELNN---GCICCTIREDLSMVLEAL 77 (174)
T ss_pred CCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCHH-----HHH--HHHHHCCCEEEEECC---CCCCCCCCHHHHHHHHHH
T ss_conf 8788999999999844-48984799993365302-----079--998706961899748---866454333699999999
Q ss_pred C---CCCCCEEEE-CCCCCCC--------CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf 0---245747997-1832234--------4123069999618433566553761365210025566514544204412
Q gi|254780401|r 131 L---QEGVDIIIM-DDGFHSA--------DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 131 ~---~~~~diiIl-DDGfQh~--------~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
. +.++|.|+. =-|+-++ .+.-+--|.++|+.+.- ++.-.| .+ ....++.||.+++||.+.
T Consensus 78 ~~~~~~~~d~iiIE~sGla~p~~i~~~~~~~~~~~~i~vvDa~~~~-~~~~~~----~~-~~~Qi~~AD~vvlNK~Dl 149 (174)
T pfam02492 78 LELKLPRLDLLFIETTGLACPAPVLDLRSDLGLDGVVTVVDVKNFT-EGEDIP----EK-APDQIAFADLIVINKTDL 149 (174)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECHHHH-HCCCCH----HH-HHHHHHHCCEEEEEHHHC
T ss_conf 8557899999999587667707777653202654599999723433-002007----89-999998769999846653
No 42
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.20 E-value=0.056 Score=34.70 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=27.7
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..|-.|+. |||||=++.++++.|.++|+.|..++
T Consensus 98 gLlF~G~~---GTGKThLA~aIan~Li~~G~sVlf~t 131 (242)
T PRK07952 98 SFIFSGKP---GTGKNHLAAAICNELLLRGKSVLIIT 131 (242)
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 17997899---99789999999999998799499977
No 43
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.10 E-value=0.54 Score=27.71 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=102.7
Q ss_pred CCCCCCH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH
Q ss_conf 7888748-9999999985247315987604578777755871456788770421233220576----3465201225664
Q gi|254780401|r 55 GGTGKTP-TALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM 129 (338)
Q Consensus 55 GGtGKTP-~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~ 129 (338)
=|||||= +++-+.+.|...... .+........+++.+...-+.++-++...+++... +++|......-..
T Consensus 55 TGSGKTlAfllPil~~ll~~~~~-----~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~ 129 (423)
T PRK04837 55 TGTGKTMAFLTATFHHLLSHPAP-----EGRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLK 129 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
T ss_conf 98749999999999999837453-----3455678618999388999999999999974325845999989988799999
Q ss_pred HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH------HHHHHCCC-CH
Q ss_conf 10245747997183-----2-234412306999961843356655376136521002556651------45442044-12
Q gi|254780401|r 130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV------DAILYVGN-KK 196 (338)
Q Consensus 130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra------d~vi~~~~-~~ 196 (338)
..+.++|+||.-=| + |+.---.++.++++|--+ ++|=.|...+ +..-+++. -.++++.. +.
T Consensus 130 ~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD-----~lld~gF~~~-i~~i~~~~p~~~~r~~~lfSATl~~ 203 (423)
T PRK04837 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-----RMFDLGFIKD-IRWLFRRMPPANQRLNMLFSATLSY 203 (423)
T ss_pred HHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHH-----HHHHCCCHHH-HHHHHHHCCCCHHEEEEEEECCCCH
T ss_conf 871799989989189999986422123664289963446-----5430263999-9999996896221089997036888
Q ss_pred ---HHHHHHCCCCH------------------HHHHH--HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCC
Q ss_conf ---45776313501------------------11222--201----32111686389874-1553578999887401000
Q gi|254780401|r 197 ---NVISSIKNKSV------------------YFAKL--KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALI 248 (338)
Q Consensus 197 ---~~~~~~~~~~i------------------~~~~~--~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i 248 (338)
+......+.|. ++... +.. .......+++++|| -...-+.....|+..|+.+
T Consensus 204 ~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~ 283 (423)
T PRK04837 204 RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRV 283 (423)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999778987999657765665426999991727799999999984088746886162888999999997659817
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 01221433234898999999997564798-7998546
Q gi|254780401|r 249 EQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 249 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
.. =|-..+.++=.++++..++... .+|||.=
T Consensus 284 ~~-----lhg~~~q~~R~~~l~~F~~g~~~vLVaTDv 315 (423)
T PRK04837 284 GL-----LTGDVPQKKRLRILEQFTRGDLDILVATDV 315 (423)
T ss_pred EE-----ECCCCCHHHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 87-----225457999999999997699989987004
No 44
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=94.04 E-value=0.04 Score=35.77 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=25.8
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=||+|||-++.-||..|.++|++|.++-
T Consensus 7 KGGVGKTT~a~nLA~~la~~G~rVlliD 34 (212)
T pfam01656 7 KGGVGKTTLAANLARALAKRGYRVLLID 34 (212)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9980699999999999997899789983
No 45
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.04 E-value=0.32 Score=29.29 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=103.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576----34652012256641
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML 130 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~ 130 (338)
=|||||= .|+.-.++..-.+++...+. .+....+++.+...-+.++-++...+..... ++++......-...
T Consensus 55 TGSGKTL--AYlLPiL~~Ll~~~~l~~~~--~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~ 130 (574)
T PRK04537 55 TGTGKTL--AFLVAVMNRLLSRPALADRK--PEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 (574)
T ss_pred CCCHHHH--HHHHHHHHHHHHCCCCCCCC--CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 9888999--99999999998374434577--8996199977989999999999999864589779999799668899998
Q ss_pred CCCCCCEEEECCC-----C-CCCCC-CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH------HHHHHCCC-CH
Q ss_conf 0245747997183-----2-23441-2306999961843356655376136521002556651------45442044-12
Q gi|254780401|r 131 LQEGVDIIIMDDG-----F-HSADL-QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV------DAILYVGN-KK 196 (338)
Q Consensus 131 ~~~~~diiIlDDG-----f-Qh~~l-~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra------d~vi~~~~-~~ 196 (338)
.+.++|+||.-=| + |+..+ -+.+..+++|--+ .+|=.|...+ +..-+++. ..++++-. +.
T Consensus 131 L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD-----~LLd~gF~~d-i~~IL~~lP~~~~rQ~iLfSATl~~ 204 (574)
T PRK04537 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-----RMFDLGFIKD-IRFLLRRMPERGTRQTLLFSATLSH 204 (574)
T ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH-----HHHCCCCHHH-HHHHHHHCCCCCCCEEEEEEECCCH
T ss_conf 735999899898999999981798653331589962732-----6542877999-9999996665568558999832777
Q ss_pred HH---HHHHCCC------------------CHHHHHH--HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCC
Q ss_conf 45---7763135------------------0111222--201----32111686389874-1553578999887401000
Q gi|254780401|r 197 NV---ISSIKNK------------------SVYFAKL--KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALI 248 (338)
Q Consensus 197 ~~---~~~~~~~------------------~i~~~~~--~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i 248 (338)
+. .....+. .+++... +.. ........+++.|| -.-.-+.+.+.|++.|+.+
T Consensus 205 ~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~~~~K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v 284 (574)
T PRK04537 205 RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRV 284 (574)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999779986999656654577603899977778999999999972677651153341899999999999779968
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 01221433234898999999997564798-7998546
Q gi|254780401|r 249 EQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 249 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
.. =|-.-+.++=...++..++... .+|||.=
T Consensus 285 ~~-----LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDV 316 (574)
T PRK04537 285 GV-----LSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (574)
T ss_pred EE-----EECCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99-----709999999999999997699979977350
No 46
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.95 E-value=0.071 Score=33.98 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=30.6
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHH-HCCCCEEEEE
Q ss_conf 889982300078887489999999985-2473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVI-DKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~-~~g~~~~ils 81 (338)
.||+|.|. -||.|||-++.-||..|. ..|++|.++=
T Consensus 3 ~iI~v~n~-KGGvGKTT~a~nLa~~La~~~~~kVLliD 39 (259)
T COG1192 3 KIIAVANQ-KGGVGKTTTAVNLAAALAKRGGKKVLLID 39 (259)
T ss_pred EEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 69999857-88851999999999999983899789997
No 47
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.87 E-value=0.053 Score=34.86 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=27.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=||.|||-++..+|-.|.++|+++.++|=
T Consensus 7 KGGVGKTTvAaalA~~lA~~G~rvLlvs~ 35 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99661999999999999968994999958
No 48
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.79 E-value=0.13 Score=32.17 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999852473159876
Q gi|254780401|r 64 LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 64 ~~l~~~l~~~g~~~~ils 81 (338)
.+|.+.=.+.|-.-+|||
T Consensus 13 EAl~~vk~eLG~DAVILs 30 (432)
T PRK12724 13 DCLMEMKMKYGSEATVIS 30 (432)
T ss_pred HHHHHHHHHHCCCEEEEE
T ss_conf 999999999789929985
No 49
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=93.71 E-value=0.062 Score=34.38 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=26.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-||+|||-+..++|-.+.++|+++.++|
T Consensus 9 KGGVGKTT~AaA~A~~~A~~G~rvLlvS 36 (304)
T pfam02374 9 KGGVGKTTVSCATAVRLSEQGKKVLLVS 36 (304)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9857489999999999995899299994
No 50
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=93.68 E-value=0.035 Score=36.19 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC----CCCEEEEC---CCCCHHHHC----CHHHHHHHCCCCCCCCCH
Q ss_conf 7888748999999998524731598760457877----77558714---567887704----212332205763465201
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS----RISFRVDL---EKHSAYDVG----DEPLLLARRAVTIVTSDR 123 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~----~~~~~v~~---~~~~~~~vG----DEp~lla~~~pv~V~~~R 123 (338)
||||||-++.=|+=-|-+.|.+|.+|= +-=+ +--+.+.. .-|+.. +| +|+.-.-+++.|.|=+
T Consensus 10 GGtGKTT~tANLgVALA~~Gk~V~~~D---ADI~MANL~LiLgmE~~~VTLhDVL-AGeA~i~DAIY~gp~GnV~V~P-- 83 (258)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLVLD---ADITMANLELILGMEDKPVTLHDVL-AGEADIKDAIYEGPEGNVKVIP-- 83 (258)
T ss_pred CCCCHHHEEEHHHHHHHHCCCEEEEEE---CCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHCCCCCCCCEEEEC--
T ss_conf 898614000007788986097689994---6766776898844688896752213-4456100110028898447850--
Q ss_pred HHHHHHHCC-CCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf 225664102-4574799718322344123069999618433566553761365210025566514544204412
Q gi|254780401|r 124 KIGVQMLLQ-EGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 124 ~~~~~~~~~-~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
|.--+++ .+++.=-|-|-. .+|.-|.||+++|+ |||.=||.+. +|.-||-.++.-+|+
T Consensus 84 --agvSLEg~rKA~~~~L~dV~--~~i~~~~D~lLIDA----------PAGL~~~a~~-Al~~a~elLLVvNPE 142 (258)
T TIGR01969 84 --AGVSLEGLRKADPDKLEDVL--KEIIDDTDFLLIDA----------PAGLERDAVT-ALAAADELLLVVNPE 142 (258)
T ss_pred --CCCCHHHCCCCCHHHHHHHH--HHHHCCCCEEEEEC----------CCCCCHHHHH-HHHHCCCCEEEECCC
T ss_conf --61221000126833328999--98720437788747----------8983378999-998618664866765
No 51
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=93.54 E-value=0.059 Score=34.52 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=77.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HC--CCCCC---
Q ss_conf 8998230007888748999999998524731598760457877775587145678877042123322-05--76346---
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RR--AVTIV--- 119 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~--~pv~V--- 119 (338)
++-|| |=|||||-+.--||++|+++|++|.+-- .+|=+-.==|-|... ++ ++|+-
T Consensus 85 il~VG---VNG~GKTTTIaKLA~~l~~~Gk~V~laA----------------gDTFRAAA~EQL~~Wa~R~gv~vi~~~~ 145 (284)
T TIGR00064 85 ILFVG---VNGVGKTTTIAKLANKLKKQGKSVLLAA----------------GDTFRAAAIEQLEVWAKRLGVDVIKQKE 145 (284)
T ss_pred EEEEE---EECCCHHHHHHHHHHHHHHCCCEEEEEC----------------CCHHHHHHHHHHHHHHHHHCCEEEECCC
T ss_conf 99984---4088601028899999987499089982----------------7524799999999989883875540788
Q ss_pred C-CCH----HHHHHHHCCCCCCEEEECCC--CCC----------------CCCC---CEEEEEEECCCCCCCCCCCCCCH
Q ss_conf 5-201----22566410245747997183--223----------------4412---30699996184335665537613
Q gi|254780401|r 120 T-SDR----KIGVQMLLQEGVDIIIMDDG--FHS----------------ADLQ---ADFSLIVVNSHRGLGNGLVFPAG 173 (338)
Q Consensus 120 ~-~~R----~~~~~~~~~~~~diiIlDDG--fQh----------------~~l~---rdl~Ivl~d~~~~~gn~~llPaG 173 (338)
+ .|- ++|++.+...+.|++|.|=+ ||. .... ++..|+++||.-| +.=+-=|
T Consensus 146 gn~DPAaV~fDAi~~Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~G--qna~~QA- 222 (284)
T TIGR00064 146 GNADPAAVIFDAIQAAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTG--QNALEQA- 222 (284)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH--HHHHHHH-
T ss_conf 9887178999989999874997899734754546620399999999987321025787557542202220--3089999-
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCHHH-------HHHHCCCCHHHH
Q ss_conf 6521002556651454420441245-------776313501112
Q gi|254780401|r 174 PLRVPLSRQLSYVDAILYVGNKKNV-------ISSIKNKSVYFA 210 (338)
Q Consensus 174 pLREp~~~~l~rad~vi~~~~~~~~-------~~~~~~~~i~~~ 210 (338)
|+ ++.+. .-|-||+||=+... ....-+.||.+.
T Consensus 223 --~~-F~eav-~ltGiiLTKLDg~AKGG~~l~i~~~l~~Pv~~~ 262 (284)
T TIGR00064 223 --KV-FNEAV-GLTGIILTKLDGTAKGGIILAIAYELKLPVKFI 262 (284)
T ss_pred --HH-HHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf --99-86540-688589963468803789998899857976998
No 52
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.34 E-value=0.069 Score=34.06 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=27.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 078887489999999985247315987604
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
--|||||-++..|++.|+++|++||++-..
T Consensus 9 ~snSGKTTLi~kli~~l~~~G~~V~~iKH~ 38 (159)
T cd03116 9 YSGSGKTTLLEKLIPALSARGLRVAVIKHD 38 (159)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 799999999999999999779859899734
No 53
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.34 E-value=0.17 Score=31.22 Aligned_cols=92 Identities=14% Similarity=0.309 Sum_probs=49.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCC-CC--HHHHCCHHHHHHHCC-CCCCCCCHHHHHHH
Q ss_conf 078887489999999985247315987604578777755871456-78--877042123322057-63465201225664
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEK-HS--AYDVGDEPLLLARRA-VTIVTSDRKIGVQM 129 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~-~~--~~~vGDEp~lla~~~-pv~V~~~R~~~~~~ 129 (338)
.=+||||-++..|++.|+++|++++++-.-..+ ..++... ++ -.++|.+-.+.+... -++....+......
T Consensus 10 ~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~-----~~~D~~GkDs~r~~~aGa~~~v~~s~~~~~~~~~~~~~~L~~ 84 (161)
T COG1763 10 YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD-----FDLDKPGKDTYRHRKAGADQVVVASDHRTALMTRTPDRDLDA 84 (161)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-----CCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEEECCCCCHHH
T ss_conf 279973428999999997579379999865877-----777889876610003566349995597899998268768999
Q ss_pred HCC-CC--CCEEEECCCCCCCCCCC
Q ss_conf 102-45--74799718322344123
Q gi|254780401|r 130 LLQ-EG--VDIIIMDDGFHSADLQA 151 (338)
Q Consensus 130 ~~~-~~--~diiIlDDGfQh~~l~r 151 (338)
+.. .. .|++|.. ||-+-.+.|
T Consensus 85 vl~~l~~~~D~vLVE-GFK~~~~pK 108 (161)
T COG1763 85 VLSRLDPLLDLVLVE-GFKEEPLPK 108 (161)
T ss_pred HHHHCCCCCCEEEEE-CCCCCCCCE
T ss_conf 997427556799995-256677778
No 54
>PRK13976 thymidylate kinase; Provisional
Probab=93.20 E-value=0.14 Score=31.97 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=46.9
Q ss_pred ECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCE----EEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 0788874899999999852-47315987604578777755----871456788770421233220576346520122566
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVID-KNLKPGFLSRGYGRKSRISF----RVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQ 128 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~-~g~~~~ilsRGYg~~~~~~~----~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~ 128 (338)
.-|+|||-.+..|+++|++ .+...++++|..|+..-|.. .....+-++. .|.+|++ .+|.+-..
T Consensus 8 iDGsGKsTq~~~L~~~L~~~~~~~~~~~trEPggt~~ge~IR~~ll~~~~~~~~---te~lLf~--------A~R~eh~~ 76 (202)
T PRK13976 8 IDGSGKTTQSRLLAEYLSQIYGENNVVLTREPGGTSFNESVRGLLLSTKNLDKL---SELLLFI--------AMRREHFV 76 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHH---HHHHHHH--------HHHHHHHH
T ss_conf 999989999999999998606998689837999982789999997165579969---9999999--------99999999
Q ss_pred HHCCC---CCCEEEEC
Q ss_conf 41024---57479971
Q gi|254780401|r 129 MLLQE---GVDIIIMD 141 (338)
Q Consensus 129 ~~~~~---~~diiIlD 141 (338)
...++ .-.+||+|
T Consensus 77 ~~I~PaL~~g~~VI~D 92 (202)
T PRK13976 77 KVILPALTQGKIVICD 92 (202)
T ss_pred HHHHHHHHCCCEEEEC
T ss_conf 9988888669989974
No 55
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.18 E-value=0.16 Score=31.38 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEECCHHHHHHHHHH
Q ss_conf 9985466343823334411122051788769895787899999999
Q gi|254780401|r 279 LVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVFENPDDLTNLVEM 324 (338)
Q Consensus 279 iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~~~~~~l~~~l~~ 324 (338)
+||| |-.|+-... ...-+..++-+|+++. .+++.|.+.|+.
T Consensus 229 lIT~--DtyRigA~e--QLk~ya~il~vp~~vv-~~~~~l~~~l~~ 269 (282)
T TIGR03499 229 LITT--DTYRIGAVE--QLKTYAKILGVPVKVA-RDPKELAKALER 269 (282)
T ss_pred EEEE--CCCCHHHHH--HHHHHHHHHCCEEEEE-CCHHHHHHHHHH
T ss_conf 9980--777678999--9999999959748993-999999999986
No 56
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.15 E-value=0.13 Score=32.15 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=30.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
||.|=| =||.|||-++.=||-.|.++|+||.++=
T Consensus 3 ~Iai~G--KGGVGKTTtavNLA~aLa~~GkkVlliD 36 (270)
T cd02040 3 QIAIYG--KGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 899979--9857789999999999998799499986
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.14 E-value=0.86 Score=26.28 Aligned_cols=206 Identities=16% Similarity=0.242 Sum_probs=105.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-CCC--CC----CCCHHHHHH
Q ss_conf 88874899999999852473159876045787777558714567887704212332205-763--46----520122566
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-AVT--IV----TSDRKIGVQ 128 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-~pv--~V----~~~R~~~~~ 128 (338)
|+|||=++..-+-...+.|++++++. |..+-...| +..... ++... ..| .. .+.|.+...
T Consensus 288 GsGKT~va~~a~~~~~~~g~q~a~ma---------PTeiLa~Qh-~~~~~~---~~~~~~i~v~lltg~~~~~~~~~~~~ 354 (677)
T PRK10917 288 GSGKTVVAALAALAAIEAGYQAALMA---------PTEILAEQH-YRNLKK---WLEPLGIRVALLTGSLKGKERREILE 354 (677)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEC---------CCHHHHHHH-HHHHHH---HHHHCCCEEEEEECCCHHHHHHHHHH
T ss_conf 78889999999999998199489987---------679999999-999998---77634988998407741778999999
Q ss_pred HHCCCCCCEEEECCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH--HH-------
Q ss_conf 4102457479971832-2344123069999618433566553761365210025566514544204412--45-------
Q gi|254780401|r 129 MLLQEGVDIIIMDDGF-HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK--NV------- 198 (338)
Q Consensus 129 ~~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~--~~------- 198 (338)
.+..-.+|+||=--++ |.---.+++-+|++|-++.||=.+ |+-+..--...|.++.|-.|- .+
T Consensus 355 ~~~~g~~~i~iGTHal~~~~v~f~~LglvviDEQHrFGV~Q-------R~~l~~k~~~~~~L~mtATPIPRtla~~~~g~ 427 (677)
T PRK10917 355 ALASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVHQ-------RLALREKGENPHVLVMTATPIPRTLAMTAYGD 427 (677)
T ss_pred HHHCCCCCEEEEHHHHHHCCCCCCCCCEEEECHHHHHHHHH-------HHHHHHCCCCCEEEEEECCCCHHHHHHHHHCC
T ss_conf 98579977897307877355644666569953057763999-------99998439997299983688438899987357
Q ss_pred -----HHHHC--CCCHHHHHHHHC--------CCCCC-CCCEEEEEEC-CCCHHHHH-HHHHHHCCCCCCCCCCCC----
Q ss_conf -----77631--350111222201--------32111-6863898741-55357899-988740100001221433----
Q gi|254780401|r 199 -----ISSIK--NKSVYFAKLKPR--------LTFDL-SGKKVLAFSG-IADTEKFF-TTVRQLGALIEQCYSFGD---- 256 (338)
Q Consensus 199 -----~~~~~--~~~i~~~~~~~~--------~~~~l-~~k~v~afsG-Ia~P~~F~-~~L~~~g~~i~~~~~fpD---- 256 (338)
+...+ .+|+-....... ....+ +|.++..+|- |-..+..- ..+++. ++..+ ..|||
T Consensus 428 ~d~s~i~~~P~~r~~i~T~~~~~~~~~~~~~~i~~~~~~g~q~y~v~p~ieese~~~~~~~~~~-~~~l~-~~~~~~~v~ 505 (677)
T PRK10917 428 LDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEET-YEELQ-KALPELRVG 505 (677)
T ss_pred CCEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHH-HHHHH-HHCCCCEEE
T ss_conf 6666667799999872699976256899999999999759928999413112332017779999-99998-448997599
Q ss_pred --CCCCCHHHHHHHHHHHHHCCC-EEEECH
Q ss_conf --234898999999997564798-799854
Q gi|254780401|r 257 --HAHLSDKKIAYLLDQAQQKGL-ILVTTA 283 (338)
Q Consensus 257 --Hh~ys~~dl~~i~~~a~~~~~-~iiTTE 283 (338)
|-+-+.++.+.+.+...+... .+|.|-
T Consensus 506 ~~hG~m~~~ek~~~m~~F~~g~~~iLvsTt 535 (677)
T PRK10917 506 LLHGRMKPAEKDAVMAAFKAGEIDILVATT 535 (677)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 830789878999999999839999999898
No 58
>KOG2743 consensus
Probab=93.10 E-value=0.13 Score=31.99 Aligned_cols=146 Identities=23% Similarity=0.269 Sum_probs=89.0
Q ss_pred CCCCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCEEEECCCCCHHHHCCHHHHHHHCCCC
Q ss_conf 3889889-98230007888748999999998524731598760457877--77558714567887704212332205763
Q gi|254780401|r 41 HAPIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS--RISFRVDLEKHSAYDVGDEPLLLARRAVT 117 (338)
Q Consensus 41 ~~~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~--~~~~~v~~~~~~~~~vGDEp~lla~~~pv 117 (338)
..++||- .-|=| |+|||.+.-+++. .++|+++|+|---+|-.. .+...+.. ...+.-.|-++|++-|--
T Consensus 54 ~~rIPvtIITGyL---GaGKtTLLn~Il~--~~hgKRIAVIlNEfGes~die~sl~~~~---~gg~lyEewv~L~NGClC 125 (391)
T KOG2743 54 GARIPVTIITGYL---GAGKTTLLNYILT--GQHGKRIAVILNEFGESSDIEKSLAVSQ---EGGELYEEWVELRNGCLC 125 (391)
T ss_pred CCCCCEEEEEECC---CCCHHHHHHHHHC--CCCCCEEEEEHHHCCCCHHHHHHHHHCC---CCCHHHHHHHHHCCCEEE
T ss_conf 8844439997314---6786899999971--6788559997010365011467777503---441579999986488089
Q ss_pred C-CCCCHHHHHHHHCC-C-CCCEEEE-CCCCC-----------CCCCCCE----EEEEEECCCCCC-CCCCCCCCHHHHH
Q ss_conf 4-65201225664102-4-5747997-18322-----------3441230----699996184335-6655376136521
Q gi|254780401|r 118 I-VTSDRKIGVQMLLQ-E-GVDIIIM-DDGFH-----------SADLQAD----FSLIVVNSHRGL-GNGLVFPAGPLRV 177 (338)
Q Consensus 118 ~-V~~~R~~~~~~~~~-~-~~diiIl-DDGfQ-----------h~~l~rd----l~Ivl~d~~~~~-gn~~llPaGpLRE 177 (338)
+ |-.+-++|++.+.+ . .+|.|++ --|+- +-.|.-| ==+-++|+.... --+..=|-|..-|
T Consensus 126 CtVk~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~E 205 (391)
T KOG2743 126 CTVKDNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINE 205 (391)
T ss_pred EEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHCCCCCCCCHHH
T ss_conf 98543089999999846787646999604788827788887644654674043038999743668865312586541578
Q ss_pred CCHHHHHHHHHHHHCCCC
Q ss_conf 002556651454420441
Q gi|254780401|r 178 PLSRQLSYVDAILYVGNK 195 (338)
Q Consensus 178 p~~~~l~rad~vi~~~~~ 195 (338)
-. +.++.||.+|+++.+
T Consensus 206 A~-~QiA~AD~II~NKtD 222 (391)
T KOG2743 206 AT-RQIALADRIIMNKTD 222 (391)
T ss_pred HH-HHHHHHHEEEECCCC
T ss_conf 88-887541135640435
No 59
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.03 E-value=0.27 Score=29.82 Aligned_cols=122 Identities=17% Similarity=0.265 Sum_probs=70.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHH-CCC-CC----------
Q ss_conf 00788874899999999852473159876045787777558714567--88770421233220-576-34----------
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLAR-RAV-TI---------- 118 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~-~~p-v~---------- 118 (338)
-..|+|||-++..|++.+.++|++++||+ +|+... .=.--||--.|-.. .+| ++
T Consensus 6 G~pGaGKStLi~~l~~~~~~~g~~VaVla------------vDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ 73 (148)
T cd03114 6 GVPGAGKSTLIDALITALRARGKRVAVLA------------IDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFL 73 (148)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEE------------ECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 89978789999999999997898379999------------688878668620323545344157998368634666654
Q ss_pred --CCCCHHHHHHHHCCCCCCEEEEC---CCCCCCCCCC--EEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf --65201225664102457479971---8322344123--0699996184335665537613652100255665145442
Q gi|254780401|r 119 --VTSDRKIGVQMLLQEGVDIIIMD---DGFHSADLQA--DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILY 191 (338)
Q Consensus 119 --V~~~R~~~~~~~~~~~~diiIlD---DGfQh~~l~r--dl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~ 191 (338)
++..=.+++..+...+.|+||.. +|--...+.. |.-+++.+.. .|. -+|+ +- ..-+..||++++
T Consensus 74 ggla~~~~~~i~~l~~~g~D~IiIETvGvGQse~~i~~~aD~~i~v~~p~--~GD--~iQ~----~K-~gi~e~aDl~vv 144 (148)
T cd03114 74 GGLSRATPEVIRVLDAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPG--AGD--DIQA----IK-AGIMEIADIVVV 144 (148)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCEEEEEECCC--CCC--HHHH----CC-CCHHHCCCEEEE
T ss_conf 20468899999999975999899974877756026554356699996368--873--7761----12-285212469999
Q ss_pred CCCC
Q ss_conf 0441
Q gi|254780401|r 192 VGNK 195 (338)
Q Consensus 192 ~~~~ 195 (338)
||.+
T Consensus 145 NK~D 148 (148)
T cd03114 145 NKAD 148 (148)
T ss_pred ECCC
T ss_conf 3789
No 60
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.78 E-value=0.095 Score=33.06 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=25.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=||+|||-++..|+++|.++|+++.++-
T Consensus 7 KGGvGKtt~~~~la~~l~~~g~~vl~iD 34 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9977499999999999997899699998
No 61
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.62 E-value=0.13 Score=32.05 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=30.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+|.++|-- |+|||-++..|+..|.++|+++.++.
T Consensus 1 ~i~~~~~k--GvGKTT~a~~La~~la~~g~~Vl~vD 34 (99)
T cd01983 1 VIVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCC--CCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 98985899--77689999999999998899699986
No 62
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.54 E-value=0.1 Score=32.77 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=25.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=||+|||-++.-|+-.|.++|+++.++=
T Consensus 8 KGGVGKTT~a~NLA~aLa~~g~~vllvD 35 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQLGYKVVLID 35 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9987099999999999997799189995
No 63
>CHL00181 cbbX CbbX; Provisional
Probab=92.51 E-value=0.62 Score=27.30 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHCCC-CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH
Q ss_conf 99740464-33889889982300078887489999999985247315987604578777755871456788770421233
Q gi|254780401|r 32 KLMKRGQR-LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL 110 (338)
Q Consensus 32 ~~~~~~~~-~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l 110 (338)
.|...+.. .......+-.||- |||||-++..+++.|.+.| +||+|. ++.++..+ -+|
T Consensus 47 ~R~~~Gl~~~~~s~h~vF~GnP---GTGKTTVARl~a~il~~lG----~L~~g~-------vve~~r~d---Lvg----- 104 (287)
T CHL00181 47 LRKNLGLVSSSPGLHMSFTGSP---GTGKTTVALKMADILYRLG----YIKKGH-------LITVTRDD---LVG----- 104 (287)
T ss_pred HHHHCCCCCCCCCCEEEEECCC---CCCHHHHHHHHHHHHHHCC----CCCCCE-------EEEECHHH---HCC-----
T ss_conf 9998799988876538887899---8679999999999999869----955895-------89953588---416-----
Q ss_pred HHHCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 220576346520122566410245747997183223
Q gi|254780401|r 111 LARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHS 146 (338)
Q Consensus 111 la~~~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh 146 (338)
-+|+.--.+..+.+.+..--|+..|++++=
T Consensus 105 ------~yvG~Ta~kt~~~i~~a~GGVLfIDEAY~L 134 (287)
T CHL00181 105 ------QYIGHTAPKTKEVLKKAMGGVLFIDEAYYL 134 (287)
T ss_pred ------CCCCCCHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf ------353521699999999645987998244653
No 64
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=92.43 E-value=0.13 Score=32.04 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
||-|||-++.-|.--|-+.|+||+++==
T Consensus 11 GGVGKTTtTANlG~aLA~lG~kVvliD~ 38 (272)
T TIGR01968 11 GGVGKTTTTANLGTALARLGKKVVLIDA 38 (272)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8977358989999999961982899954
No 65
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=92.43 E-value=0.26 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=++|||-.+..|+++|.++|++++|+|-
T Consensus 8 P~SGKSt~A~~L~~~l~~~~~~v~vi~d 35 (266)
T pfam08433 8 PSSGKSTRAKELAKYLEEKGYDVIVISD 35 (266)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9996889999999999975993899780
No 66
>CHL00175 minD septum-site determining protein; Validated
Probab=92.35 E-value=0.12 Score=32.30 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=32.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
..||+|-|- =||.|||-++.-|+-.|.+.|++|.++===
T Consensus 13 ~kiIaV~s~-KGGVGKTT~a~NLa~aLA~~G~kVlliD~D 51 (279)
T CHL00175 13 TRIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDAD 51 (279)
T ss_pred CEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 869999748-998448999999999999789988999578
No 67
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=92.31 E-value=0.13 Score=32.20 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=29.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+|.| -==||.|||-++.=|+-.|.++|+||.++=
T Consensus 2 ~iai--~GKGGVGKTTtsvNLA~aLA~~GkrVlliD 35 (269)
T pfam00142 2 KIAI--YGKGGIGKSTTSQNTSAALAEMGKKVLIVG 35 (269)
T ss_pred EEEE--ECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 5899--899976889999999999998799099984
No 68
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=92.26 E-value=0.2 Score=30.73 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=37.4
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE
Q ss_conf 889889982300078887489999999985247315987604578777755
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISF 92 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~ 92 (338)
.+.-+..||+. .+|||-++.||++.+.++|++++||.=-=|-+.=+|+
T Consensus 72 ~~~~vmvvG~v---DSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pP 119 (398)
T COG1341 72 KVGVVMVVGPV---DSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPP 119 (398)
T ss_pred CCCEEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 87389998986---7678899999998876447418999689997666797
No 69
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.23 E-value=0.18 Score=31.08 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=25.3
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 00788874899999999852473159876
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|-|+|||-|.-.-.++..+.|-.++|.|
T Consensus 123 AV~GaGKTEMif~~i~~al~~G~~vciAS 151 (441)
T COG4098 123 AVTGAGKTEMIFQGIEQALNQGGRVCIAS 151 (441)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 74279851016999999996598699846
No 70
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.22 E-value=0.27 Score=29.89 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHH--HCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH-H--CCCCCCCCCHHHHHHH
Q ss_conf 78887489999999985--24731598760457877775587145678877042123322-0--5763465201225664
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI--DKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA-R--RAVTIVTSDRKIGVQM 129 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~--~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~--~~pv~V~~~R~~~~~~ 129 (338)
-|.|||-+..-||-.+. ...++|+|||= ++..--.=|-+-.. + .+|+.|+.+-.+-..+
T Consensus 212 TGVGKTTTlAKLAar~~~~~~~~kVaiITt----------------DtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 212 TGVGKTTTLAKLAARYVMLKKKKKVAIITT----------------DTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEE----------------CCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf 887588799999999975325760689971----------------4411528999999999869955996399999999
Q ss_pred HCC-CCCCEEEECC
Q ss_conf 102-4574799718
Q gi|254780401|r 130 LLQ-EGVDIIIMDD 142 (338)
Q Consensus 130 ~~~-~~~diiIlDD 142 (338)
+.. .++|+|+.|-
T Consensus 276 i~~l~~~d~ILVDT 289 (407)
T COG1419 276 IEALRDCDVILVDT 289 (407)
T ss_pred HHHHHCCCEEEEEC
T ss_conf 99853188899968
No 71
>PRK10818 cell division inhibitor MinD; Provisional
Probab=92.20 E-value=0.13 Score=32.15 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=30.8
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.||+|-|- =||.|||-++.-|+-.|.++|+++.++==
T Consensus 3 rvIaV~s~-KGGVGKTT~avNLA~aLA~~G~kVlliD~ 39 (270)
T PRK10818 3 RIIVVTSG-KGGVGKTTSSAAIATGLAQKGKKTVVIDF 39 (270)
T ss_pred EEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 49999789-99841899999999999977996899968
No 72
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.04 E-value=0.13 Score=32.01 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=26.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-||.|||-++.-||-.|.++|++++++-=
T Consensus 8 kggvgkst~~~~la~~l~~~g~~v~~~d~ 36 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDA 36 (169)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99881999999999999987997899971
No 73
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=91.87 E-value=0.32 Score=29.29 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCE-EEEEECCC
Q ss_conf 8887489999999985247315-98760457
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKP-GFLSRGYG 85 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~-~ilsRGYg 85 (338)
|.|||-++.-+++.|++.|+++ |+++..+.
T Consensus 9 GvGKTTli~kv~~~l~~~~~~v~GF~T~evr 39 (168)
T pfam03266 9 GVGKTTLVKKVIELLKSEGVKVGGFYTPEVR 39 (168)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCEE
T ss_conf 9889999999999998679707489930212
No 74
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=0.47 Score=28.15 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCCCCEEEECCEEECCC----CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC
Q ss_conf 38898899823000788----87489999999985247315987604578777755871456788770421233220576
Q gi|254780401|r 41 HAPIPVICVGGFVMGGT----GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV 116 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGt----GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p 116 (338)
+.+++++. ++|| ||--+++.|.+.+++.|++++.++-|=-+ ... +|+.+-+-+- |
T Consensus 145 k~~a~~V~-----vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg--------------il~-~~~gvvvdav-~ 203 (339)
T COG3367 145 KVDAKVVL-----VVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG--------------ILI-ADDGVVVDAV-V 203 (339)
T ss_pred CCCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEE--------------EEE-ECCCEEECCH-H
T ss_conf 46776899-----9335632104388999999999709863157607604--------------688-5274675303-6
Q ss_pred CCCCCCHHHHHHH-HCCCCCCEEEEC--CCCCCCC----------CCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf 3465201225664-102457479971--8322344----------1230699996184335665537613652100
Q gi|254780401|r 117 TIVTSDRKIGVQM-LLQEGVDIIIMD--DGFHSAD----------LQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 117 v~V~~~R~~~~~~-~~~~~~diiIlD--DGfQh~~----------l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
.-+..-=..++-+ +.+.++|+|+.. -++-|+. ..+|.-+++-+..|++-.++-=|.+||+|-+
T Consensus 204 ~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip~leevi 279 (339)
T COG3367 204 MDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIPPLEEVI 279 (339)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf 8889888888888765228987999065343477765214330477897699974699752367987689889988
No 75
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.80 E-value=0.34 Score=29.13 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=43.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCC
Q ss_conf 8899823000788874899999999852473159876045787777558714567887704212332-20--57634652
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTS 121 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~ 121 (338)
-|=||-=+==-|.|||-+..-||-.+...+.+||+|+= ++.+-.+=|-|-- ++ .+|+.|..
T Consensus 240 ~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITt----------------DTYRIGAVEQLKTYAeIMgVPV~VV~ 303 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT----------------DHSRIGTVQQLQDYVKTIGFEVIAVR 303 (436)
T ss_pred HCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEC----------------CCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 17179998999988899999999998616980899980----------------66347699999999998499439968
Q ss_pred CHHHHHHHH---CC-CCCCEEEECCC
Q ss_conf 012256641---02-45747997183
Q gi|254780401|r 122 DRKIGVQML---LQ-EGVDIIIMDDG 143 (338)
Q Consensus 122 ~R~~~~~~~---~~-~~~diiIlDDG 143 (338)
+...-...+ .+ .++|+|+.|-+
T Consensus 304 dp~eL~~AL~~lkdka~~DLILIDTA 329 (436)
T PRK11889 304 DEAAMTRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 88999999998763368888999298
No 76
>PRK07933 thymidylate kinase; Validated
Probab=91.80 E-value=0.084 Score=33.47 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=29.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCC
Q ss_conf 07888748999999998524731598760-45787777
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR-GYGRKSRI 90 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR-GYg~~~~~ 90 (338)
.-|+|||-.+..|++.|.++|+++.+..- +||+...+
T Consensus 8 iDGsGKSTq~~~L~~~L~~~g~~v~~~reP~~g~~~~g 45 (213)
T PRK07933 8 VDGAGKRTLTEALRAALEAAGRSVATLAFPRYGRSVHA 45 (213)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHH
T ss_conf 99998999999999999977990799846899998489
No 77
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.78 E-value=0.59 Score=27.43 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=78.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-CC-CC---
Q ss_conf 98899823000788874899999999852473159876045787777558714567887704212332205-76-34---
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-AV-TI--- 118 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-~p-v~--- 118 (338)
.+|| |=-=++|+||.-++..|...|.++|++|+||+=-=.+... --.--||---|-... .| ++
T Consensus 51 a~vi--GITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T----------GGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 51 AHVI--GITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT----------GGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred CCEE--EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC----------CCCCCCCHHHHHHHCCCCCEEEEE
T ss_conf 8378--7317998866889999999999779678999988999987----------853012076677644699817842
Q ss_pred ---------CCCCHHHHHHHHCCCCCCEEEECC---CCCCCCCCCEEEEEEECCCCCCCCCC-CCCCHHHHHCCHHHHHH
Q ss_conf ---------652012256641024574799718---32234412306999961843356655-37613652100255665
Q gi|254780401|r 119 ---------VTSDRKIGVQMLLQEGVDIIIMDD---GFHSADLQADFSLIVVNSHRGLGNGL-VFPAGPLRVPLSRQLSY 185 (338)
Q Consensus 119 ---------V~~~R~~~~~~~~~~~~diiIlDD---GfQh~~l~rdl~Ivl~d~~~~~gn~~-llPaGpLREp~~~~l~r 185 (338)
+++.-..++..+...++|+||..- |=-.-.+..-.|++++=..-+.|... .+-+|. +.-
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~Gi--------mEi 190 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGI--------MEI 190 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHH--------HHH
T ss_conf 687765101668899999999861898899981478841557765216689996578882788887414--------654
Q ss_pred HHHHHHCCCCHHHH
Q ss_conf 14544204412457
Q gi|254780401|r 186 VDAILYVGNKKNVI 199 (338)
Q Consensus 186 ad~vi~~~~~~~~~ 199 (338)
||++++||.+....
T Consensus 191 aDi~vINKaD~~~A 204 (323)
T COG1703 191 ADIIVINKADRKGA 204 (323)
T ss_pred HHEEEEECCCHHHH
T ss_conf 03356725672658
No 78
>PRK11670 putative ATPase; Provisional
Probab=91.61 E-value=0.16 Score=31.42 Aligned_cols=34 Identities=38% Similarity=0.615 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC-CCCCC
Q ss_conf 78887489999999985247315987604-57877
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG-YGRKS 88 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG-Yg~~~ 88 (338)
||.|||-++.-||-.|.++|++|+++-=- ||.+.
T Consensus 117 GGVGKSTvavNLA~ALA~~G~kVgllDADi~Gpsi 151 (369)
T PRK11670 117 GGVGKSSTAVNLALALAAEGAKVGILDADIYGPSI 151 (369)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 98889999999999999669937898247888765
No 79
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=91.30 E-value=0.26 Score=29.92 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=71.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC
Q ss_conf 88988998230007888748999999998524731598760457877775587145678877042123322057634652
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS 121 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~ 121 (338)
-|+||..|.-. =|+|||-+.-.+.+. ..|.+++||--=+|.- -+| ..--.+.++|-..|.+-|--+..+
T Consensus 2 ~~IPVtiltGF--LGaGKTTlL~~lL~~--~~~~riaVivNEfGev-----~iD--~~li~~~~~~v~eL~nGCiCCs~~ 70 (317)
T PRK11537 2 NPIAVTLLTGF--LGAGKTTLLRHILNE--QHGYKIAVIENEFGEV-----SVD--DQLIGDRATQIKTLTNGCICCSRS 70 (317)
T ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHC--CCCCCEEEEEECCCCC-----CCH--HHHHHCCCCCEEEECCCCEEEEEC
T ss_conf 97688998308--888999999999727--7899789998376145-----332--988735653268844773687305
Q ss_pred CH-HHHHHHHCCC------CCCEEEE-----------------CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 01-2256641024------5747997-----------------1832234412306999961843356655376136521
Q gi|254780401|r 122 DR-KIGVQMLLQE------GVDIIIM-----------------DDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRV 177 (338)
Q Consensus 122 ~R-~~~~~~~~~~------~~diiIl-----------------DDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLRE 177 (338)
+- ..+...+.+. .+|.||. |+.+. .++.=|-=|.++|+.+..-.-.-.| |
T Consensus 71 ~dl~~~l~~l~~~~~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~-~~~~Ld~vVtvVDa~~~~~~l~~~~-----~ 144 (317)
T PRK11537 71 NELEDALLDLLDNLDRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLC-QRYLLDGVIALVDAVHADEQMNQFT-----I 144 (317)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-HHEECCCEEEEEEHHHHHHHHHCCH-----H
T ss_conf 228999999998664357775479996257788399999986125656-5320365599986655576653034-----6
Q ss_pred CCHHHHHHHHHHHHCCCCH
Q ss_conf 0025566514544204412
Q gi|254780401|r 178 PLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 178 p~~~~l~rad~vi~~~~~~ 196 (338)
- ...+..||.+++||.+.
T Consensus 145 ~-~~Qi~~AD~illnK~Dl 162 (317)
T PRK11537 145 A-QSQVGYADRILLTKTDV 162 (317)
T ss_pred H-HHHHHHCCEEEEECCCC
T ss_conf 6-76663186899742002
No 80
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=91.18 E-value=0.85 Score=26.29 Aligned_cols=130 Identities=20% Similarity=0.241 Sum_probs=77.4
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHH--CC-------
Q ss_conf 99823000788874899999999852473159876045787777558714567--88770421233220--57-------
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLAR--RA------- 115 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~--~~------- 115 (338)
+.||=-=..|.||+-++..|..++.++|.+++||. ||++.. -=.--||---|-.. +-
T Consensus 30 ~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlA------------vDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~ 97 (267)
T pfam03308 30 HRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLA------------VDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSS 97 (267)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE------------ECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEC
T ss_conf 59987689988799999999999996898689999------------789998888630010777765058998588645
Q ss_pred -----CCCCCCCHHHHHHHHCCCCCCEEEECC---CCCCCCCCC--EEEEEEECCCCCCCCCC-CCCCHHHHHCCHHHHH
Q ss_conf -----634652012256641024574799718---322344123--06999961843356655-3761365210025566
Q gi|254780401|r 116 -----VTIVTSDRKIGVQMLLQEGVDIIIMDD---GFHSADLQA--DFSLIVVNSHRGLGNGL-VFPAGPLRVPLSRQLS 184 (338)
Q Consensus 116 -----pv~V~~~R~~~~~~~~~~~~diiIlDD---GfQh~~l~r--dl~Ivl~d~~~~~gn~~-llPaGpLREp~~~~l~ 184 (338)
.--+++.-..++..+...++|+||..- |=-...+.. |.-++|.- -+.|... .+=+| -+.
T Consensus 98 ~srg~lGGls~~t~~~i~lleaaGfD~IivETVGVGQsE~~v~~~aD~~llv~~--Pg~GDeiQ~iKaG--------ImE 167 (267)
T pfam03308 98 PSRGALGGLSRATREAILLLDAAGFDVIIIETVGVGQSEVDIANMADTFVLVTI--PGGGDDLQGIKAG--------LME 167 (267)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCEEEEEEC--CCCCHHHHHHHHH--------HHH
T ss_conf 778888871476999999999779999999247777530355541576899955--8876088898753--------765
Q ss_pred HHHHHHHCCCCHHH
Q ss_conf 51454420441245
Q gi|254780401|r 185 YVDAILYVGNKKNV 198 (338)
Q Consensus 185 rad~vi~~~~~~~~ 198 (338)
-||++++||++...
T Consensus 168 iaDi~vVNKaD~~~ 181 (267)
T pfam03308 168 IADIYVVNKADLPG 181 (267)
T ss_pred HCCEEEEECCCHHH
T ss_conf 35489996676476
No 81
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=91.03 E-value=0.49 Score=27.98 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=73.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC-CCCHHHHHHHHC--C
Q ss_conf 8887489999999985247315987604578777755871456788770421233220576346-520122566410--2
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIV-TSDRKIGVQMLL--Q 132 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V-~~~R~~~~~~~~--~ 132 (338)
|+|||-+..-|.+... |.|+|||=-=+|- +-++. +..-...|.|-.-|++-|--+. -.|.......+. +
T Consensus 11 GsGKTTlL~~lL~~~~--g~kiAVIVNEfGE-----vgID~-~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 11 GSGKTTLLNHLLANRD--GKKIAVIVNEFGE-----VGIDG-GALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred CCCHHHHHHHHHHCCC--CCEEEEEEECCCC-----CCCCC-CCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHCC
T ss_conf 7998999999985458--9807999855740-----22167-76413489757983697078703421589999998525
Q ss_pred CCCCEE-EECCCCCCC-----------CCCCEE----EEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf 457479-971832234-----------412306----9999618433566553761365210025566514544204412
Q gi|254780401|r 133 EGVDII-IMDDGFHSA-----------DLQADF----SLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 133 ~~~dii-IlDDGfQh~-----------~l~rdl----~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
.++|.| |==-|+-|+ .+...+ -+.++|+.+..-...- ..|-...++.-||.+++||.+.
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-----~~~~~~~Qia~AD~ivlNK~Dl 157 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-----IAELAEDQLAFADVIVLNKTDL 157 (323)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHH-----HHHHHHHHHHHCCEEEEECCCC
T ss_conf 68998999688777869999986065122454041336999847886545677-----9999999998679999836456
No 82
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=91.01 E-value=0.2 Score=30.72 Aligned_cols=182 Identities=17% Similarity=0.266 Sum_probs=87.6
Q ss_pred CCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCEEEECCCC----CHHHHCCHHHHHH--HCC------C-CC-
Q ss_conf 7888748999999998524--73159876045787777558714567----8877042123322--057------6-34-
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK--NLKPGFLSRGYGRKSRISFRVDLEKH----SAYDVGDEPLLLA--RRA------V-TI- 118 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~--g~~~~ilsRGYg~~~~~~~~v~~~~~----~~~~vGDEp~lla--~~~------p-v~- 118 (338)
||-|||-+.-+.|=+|.++ |+|+.+||= |++++ =-.+.|-||-.++ .+- | ..
T Consensus 6 GGVGKTt~SaAtA~~lAe~qPGkkvLl~ST------------DPAHsL~D~F~~e~G~~~~kv~g~eNL~~~EIDp~~al 73 (330)
T TIGR00345 6 GGVGKTTISAATAIRLAEQQPGKKVLLVST------------DPAHSLSDVFEQELGHEPTKVKGVENLSAVEIDPQAAL 73 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEE------------CCCHHHHHHHHHHHCCCCCEEECCCCCEEEEECHHHHH
T ss_conf 882388899999999985189977999840------------86002788611321777303205898555510378999
Q ss_pred ----------------CCCCH------HHHHHHHCC------CCCC-EEEECCCCCCCCC---CC--EEEEEEECCCCCC
Q ss_conf ----------------65201------225664102------4574-7997183223441---23--0699996184335
Q gi|254780401|r 119 ----------------VTSDR------KIGVQMLLQ------EGVD-IIIMDDGFHSADL---QA--DFSLIVVNSHRGL 164 (338)
Q Consensus 119 ----------------V~~~R------~~~~~~~~~------~~~d-iiIlDDGfQh~~l---~r--dl~Ivl~d~~~~~ 164 (338)
+..+| ...-..+.. +|.| ++.+|-=..|..= .- .+|+|+||. -|=
T Consensus 74 ~~y~~rvf~~~~~i~~~~~~~~~~~l~~ql~~~~~~dltGsiPGiDE~~~F~~~~k~~~~~~~~e~etyD~vIfDT-APT 152 (330)
T TIGR00345 74 EEYRARVFKLKEQIKQNLSLGVVDMLEDQLEGAALSDLTGSIPGIDEIAAFDEFLKHMDEAELNERETYDVVIFDT-APT 152 (330)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCC
T ss_conf 9879999999999860678873202799999877775227998588999999999876543215676234688716-974
Q ss_pred CCC--C-CCCC---------HHHHHCCHHHHHHH-HHHHHCCCCHHH--HHHHCCCCHHHHHHHH--CCCCCCCCCEEEE
Q ss_conf 665--5-3761---------36521002556651-454420441245--7763135011122220--1321116863898
Q gi|254780401|r 165 GNG--L-VFPA---------GPLRVPLSRQLSYV-DAILYVGNKKNV--ISSIKNKSVYFAKLKP--RLTFDLSGKKVLA 227 (338)
Q Consensus 165 gn~--~-llPa---------GpLREp~~~~l~ra-d~vi~~~~~~~~--~~~~~~~~i~~~~~~~--~~~~~l~~k~v~a 227 (338)
|.- + -||. +-+|+-++..++-. ......|...++ ........-+..+++. ....|-.-..+.+
T Consensus 153 GHTLRLL~lP~~~~~~~~~~~k~~~~~g~~~~~~~~~Lpf~G~~~~l~~~~~l~~~~e~Ke~~~~~~~~l~DP~~T~f~~ 232 (330)
T TIGR00345 153 GHTLRLLQLPEVLSKFLEKFIKLREKLGPMLKLFKELLPFMGAGESLEDDEALEKLEELKEQIEAAREVLSDPERTSFVL 232 (330)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 67775310023679999874356777889887664105789898878778999989999999999999724998516888
Q ss_pred EE-----CCCCHHHHHHHHHHHCCCCC
Q ss_conf 74-----15535789998874010000
Q gi|254780401|r 228 FS-----GIADTEKFFTTVRQLGALIE 249 (338)
Q Consensus 228 fs-----GIa~P~~F~~~L~~~g~~i~ 249 (338)
|| -|--.+|..+.|..+|+.+.
T Consensus 233 V~~pE~~~l~E~~R~~~~L~~Y~~~~~ 259 (330)
T TIGR00345 233 VVIPEKMSLYESERAHKELKKYGIKVD 259 (330)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 860262427899999999986498504
No 83
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.94 E-value=0.44 Score=28.31 Aligned_cols=77 Identities=26% Similarity=0.254 Sum_probs=45.4
Q ss_pred EECCEEECCCCCCHHHHHHHHHH-HHCCC-CEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH-H--CCCCCCCCC
Q ss_conf 98230007888748999999998-52473-1598760457877775587145678877042123322-0--576346520
Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAV-IDKNL-KPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA-R--RAVTIVTSD 122 (338)
Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l-~~~g~-~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~--~~pv~V~~~ 122 (338)
.||-- |.|||-++.-||..+ ...|. +|++||- | +..-.+=|.+-.. + ..|+.|..+
T Consensus 215 lVGPT---GVGKTTTiAKLAA~~~l~~~~~kV~lIT~------------D----tyRigA~eQLk~Ya~ilgvp~~v~~~ 275 (412)
T PRK05703 215 LVGPT---GVGKTTTLAKLAARYALEEGKDKVALITL------------D----TYRIGAVEQLKTYAKIMGIPVKVAYD 275 (412)
T ss_pred EECCC---CCCHHHHHHHHHHHHHHHCCCCEEEEEEE------------C----CCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 98888---87567699999999999729981799983------------7----67777999999999971973798479
Q ss_pred HHHHHHHHCC-CCCCEEEECCC
Q ss_conf 1225664102-45747997183
Q gi|254780401|r 123 RKIGVQMLLQ-EGVDIIIMDDG 143 (338)
Q Consensus 123 R~~~~~~~~~-~~~diiIlDDG 143 (338)
..+=...+.+ .++|+|+.|=+
T Consensus 276 ~~~l~~al~~~~~~dlILIDTa 297 (412)
T PRK05703 276 PKELAKALEQLANCDLILIDTA 297 (412)
T ss_pred HHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999987158997999689
No 84
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=90.94 E-value=0.21 Score=30.65 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
||.|||-++.-|+-.|.++|+++.++-
T Consensus 9 gGvGkt~~~~nLa~~la~~G~~vll~D 35 (139)
T cd02038 9 GGVGKTNISANLALALAKLGKRVLLLD 35 (139)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 998399999999999997899699998
No 85
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=90.70 E-value=0.14 Score=31.96 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=25.1
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 007888748999999998524731598760
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+-.|+|||-++..|+..|+++|++|.----
T Consensus 9 ~~SgsGKTtvt~gL~~aL~~rG~~Vq~FK~ 38 (432)
T PRK13896 9 TSSGVGKTVATLAVLQALADAGYDVQPAKA 38 (432)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 899998999999999999978496376666
No 86
>pfam03618 DUF299 Domain of unknown function (DUF299). Family of bacterial proteins with no known function.
Probab=90.59 E-value=0.15 Score=31.67 Aligned_cols=62 Identities=19% Similarity=0.332 Sum_probs=28.7
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-----HHHHHHHHHHHHCCCEEE-ECHH
Q ss_conf 32111686389874155357899988740100001221433234898-----999999997564798799-8546
Q gi|254780401|r 216 LTFDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSD-----KKIAYLLDQAQQKGLILV-TTAK 284 (338)
Q Consensus 216 ~~~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~-----~dl~~i~~~a~~~~~~ii-TTEK 284 (338)
.+.+...++++.. +-+|+++.+ +++.-..-. -.+ ...|.. .+++.-.+..++.+.++| ||.|
T Consensus 178 ~L~~~~~~kivGL--ti~p~rL~~-IR~~Rl~~l---g~~-~s~Ya~~~~i~~El~~A~~l~~~~~~pvIdvT~k 245 (255)
T pfam03618 178 ELFEVDRKKVFGL--TIDPERLHE-IRRERLPSL---GLD-ESRYASLEQCREELAYAERLFRRLGIPVIDVTNK 245 (255)
T ss_pred HHHHCCCCEEEEE--ECCHHHHHH-HHHHHHHHC---CCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 8970789749999--898899999-999998745---999-8876899999999999999999829988989987
No 87
>PRK05339 hypothetical protein; Provisional
Probab=90.54 E-value=0.15 Score=31.62 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=14.4
Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 13211168638987415535789998
Q gi|254780401|r 215 RLTFDLSGKKVLAFSGIADTEKFFTT 240 (338)
Q Consensus 215 ~~~~~l~~k~v~afsGIa~P~~F~~~ 240 (338)
..+.++++++++.. +-+|+++.+.
T Consensus 188 ~~L~~~~~~kivGL--tidp~rL~~I 211 (273)
T PRK05339 188 EELFPIKPKKLFGL--TIDPERLIEI 211 (273)
T ss_pred HHHHHCCCCEEEEE--ECCHHHHHHH
T ss_conf 65774689749999--7888999999
No 88
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=90.52 E-value=0.25 Score=30.14 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=26.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=||.|||-++.=|+-.|.++|+||.++=
T Consensus 8 KGGVGKTTts~NLaaaLA~~G~rVl~iD 35 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9835687789999999998699699990
No 89
>PRK10037 cell division protein; Provisional
Probab=90.34 E-value=0.26 Score=29.92 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|||+|=.+ -||.|||-++..|+..|++.|.+|.+|=
T Consensus 2 ~iial~s~-kGGVGkTTltAnLA~aL~~~g~~VlaID 37 (250)
T PRK10037 2 AILGLQGV-RGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 37999607-8887689999999999997799189995
No 90
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=89.80 E-value=0.47 Score=28.13 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=70.8
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HCCCCC-----
Q ss_conf 88998230007888748999999998524731598760457877775587145678877042123322-057634-----
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RRAVTI----- 118 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~~pv~----- 118 (338)
|+.+||=...=|+|||-+...+++.|+++ |+++++.-- +.+ --|.-.+-. .-.|++
T Consensus 12 ~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~D----------i~t-------~~Da~~l~~~~g~~i~~v~TG 73 (202)
T COG0378 12 PMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGD----------IYT-------KEDADRLRKLPGEPIIGVETG 73 (202)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEECE----------EEC-------HHHHHHHHHCCCCEEEEECCC
T ss_conf 64899961799867899999999999752-776899640----------400-------655999973779806874038
Q ss_pred -CC-CCH---HHHHHHHCCC--CCCEEEECCC--C---CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH
Q ss_conf -65-201---2256641024--5747997183--2---234412306999961843356655376136521002556651
Q gi|254780401|r 119 -VT-SDR---KIGVQMLLQE--GVDIIIMDDG--F---HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV 186 (338)
Q Consensus 119 -V~-~~R---~~~~~~~~~~--~~diiIlDDG--f---Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra 186 (338)
.| .|- ..+++.+... ..|+++..-| + -.+.|.-.+.|+++|...| .+--.=-|| .+.+|
T Consensus 74 ~~CH~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteG--e~~P~K~gP-------~i~~a 144 (202)
T COG0378 74 KGCHLDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEG--EDIPRKGGP-------GIFKA 144 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCCCCCHHHCEEEEEEECCCC--CCCCCCCCC-------CEEEE
T ss_conf 765886788999999986317767789992376432446804130469999987888--887655799-------64674
Q ss_pred HHHHHCCCC
Q ss_conf 454420441
Q gi|254780401|r 187 DAILYVGNK 195 (338)
Q Consensus 187 d~vi~~~~~ 195 (338)
|++++||.+
T Consensus 145 DllVInK~D 153 (202)
T COG0378 145 DLLVINKTD 153 (202)
T ss_pred EEEEEEHHH
T ss_conf 189985677
No 91
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.63 E-value=0.69 Score=26.94 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=86.3
Q ss_pred EC--CCCCCHHHHHHHHHHHH-CC-CCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH---CCCCCCCCCHHHH
Q ss_conf 07--88874899999999852-47-315987604578777755871456788770421233220---5763465201225
Q gi|254780401|r 54 MG--GTGKTPTALAIAKAVID-KN-LKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR---RAVTIVTSDRKIG 126 (338)
Q Consensus 54 vG--GtGKTP~v~~l~~~l~~-~g-~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~---~~pv~V~~~R~~~ 126 (338)
|| |.|||-++.-||-.+.- .| .+|++|+ .++..-.+=|-|-..- ..|+-|..+..+-
T Consensus 182 VGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT----------------~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL 245 (404)
T PRK06995 182 VGPTGVGKTTTTAKLAARCVMRHGASKVALLT----------------TDSYRIGGHEQLRIYGKILGVPVHAVKDAADL 245 (404)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE----------------CCCCCHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 66888763758999999999983898379997----------------68754789999999998759559995999999
Q ss_pred HHHHCC-CCCCEEEECCC-CCCCC--CCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHH-----HHHHHHCCCCHH
Q ss_conf 664102-45747997183-22344--1230699996184335665537613652100255665-----145442044124
Q gi|254780401|r 127 VQMLLQ-EGVDIIIMDDG-FHSAD--LQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSY-----VDAILYVGNKKN 197 (338)
Q Consensus 127 ~~~~~~-~~~diiIlDDG-fQh~~--l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~r-----ad~vi~~~~~~~ 197 (338)
...+.+ .+.|+|+.|-+ .-++. +...+..+ .....+.-.-.+|++.-=.+.+...+++ .+-+|+||-++.
T Consensus 246 ~~aL~~l~~~dlILIDTaGrs~rD~~~~e~l~~l-~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDEt 324 (404)
T PRK06995 246 RLALAELRNKHIVLIDTVGMSQRDRMVSEQIAML-HGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEA 324 (404)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH-HHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 9999970899999980999897688899999999-735788528999779899999999999844699983998304067
Q ss_pred -----HHH--HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -----577--6313501112222013211168638987415535789998874010000122143323489899999999
Q gi|254780401|r 198 -----VIS--SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLD 270 (338)
Q Consensus 198 -----~~~--~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~ 270 (338)
.+. .....|+.+...=...+.|+. .||++.+.+---. .....-++.+++.++..+..
T Consensus 325 ~~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~---------~A~~~~Lv~ra~~-------~~~~~~~~~~~~~~~~~~~~ 388 (404)
T PRK06995 325 ASLGGALDTVIRHKLPLHYVSNGQRVPEDLH---------VANAKFLLHRAFC-------APREGSPFVPQDDEMPLLLA 388 (404)
T ss_pred CCHHHHHHHHHHHCCCEEEECCCCCCCCCHH---------CCCHHHHHHHHHH-------CCCCCCCCCCCCCHHHHHHH
T ss_conf 9723999999997898599818995842121---------0898999999862-------64558999988007999998
Q ss_pred H
Q ss_conf 7
Q gi|254780401|r 271 Q 271 (338)
Q Consensus 271 ~ 271 (338)
.
T Consensus 389 ~ 389 (404)
T PRK06995 389 A 389 (404)
T ss_pred H
T ss_conf 7
No 92
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=89.60 E-value=0.34 Score=29.17 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=26.1
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 00788874899999999852473159876
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|||-|||-+.-+||+.+.++|++|.+-+
T Consensus 4 ~VGaGGKTS~m~~LA~e~~~~G~~VlvTT 32 (232)
T TIGR03172 4 FVGAGGKTSTMFWLAAEYRKEGYRVLVTT 32 (232)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98898799999999999987699099988
No 93
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.55 E-value=0.35 Score=29.06 Aligned_cols=29 Identities=34% Similarity=0.367 Sum_probs=26.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-||.|||-++.+.|-++-+.|.++.++|=
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g~kvLlvSt 38 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESGKKVLLVST 38 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 88545899999999999975990799984
No 94
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=89.46 E-value=1.4 Score=24.85 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=75.7
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHH--C--------
Q ss_conf 99823000788874899999999852473159876045787777558714567--88770421233220--5--------
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLAR--R-------- 114 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~--~-------- 114 (338)
..||=--..|.||.-++..|...+.++|.+|+||. ||++.. .-.--||---|-.. .
T Consensus 50 ~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vla------------vDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~ 117 (325)
T PRK09435 50 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA------------VDPSSTRTGGSILGDKTRMERLSRHPNAFIRPS 117 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE------------ECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 59974279998688999999999996798589999------------789999888610103888876147998488406
Q ss_pred ----CCCCCCCCHHHHHHHHCCCCCCEEEECC---CCCCCCCCC--EEEEEEECCCCCCCCCC-CCCCHHHHHCCHHHHH
Q ss_conf ----7634652012256641024574799718---322344123--06999961843356655-3761365210025566
Q gi|254780401|r 115 ----AVTIVTSDRKIGVQMLLQEGVDIIIMDD---GFHSADLQA--DFSLIVVNSHRGLGNGL-VFPAGPLRVPLSRQLS 184 (338)
Q Consensus 115 ----~pv~V~~~R~~~~~~~~~~~~diiIlDD---GfQh~~l~r--dl~Ivl~d~~~~~gn~~-llPaGpLREp~~~~l~ 184 (338)
..--+++.-.+++..+...+.|+||..- |=-...+.. |.-+++.- -+.|... .+-+| -+.
T Consensus 118 ~srg~lgg~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~e~~v~~~~d~~~~~~~--p~~GD~~Q~~K~G--------ImE 187 (325)
T PRK09435 118 PSSGTLGGVARKTRETMLLCEAAGFDVILVETVGVGQSETAVAGMVDFFLLLQL--PGAGDELQGIKKG--------IME 187 (325)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEC--CCCCCHHHHHHHH--------HHH
T ss_conf 778886773354999999999779998999706777148899874266888835--8876088998865--------775
Q ss_pred HHHHHHHCCCCHHH
Q ss_conf 51454420441245
Q gi|254780401|r 185 YVDAILYVGNKKNV 198 (338)
Q Consensus 185 rad~vi~~~~~~~~ 198 (338)
-||++++||++.+.
T Consensus 188 iaDi~vVNKaDgd~ 201 (325)
T PRK09435 188 LADLIVINKADGDN 201 (325)
T ss_pred HCCEEEEECCCCCC
T ss_conf 04268997767556
No 95
>KOG1532 consensus
Probab=89.39 E-value=0.56 Score=27.60 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=27.9
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 338898899823000788874899999999852473159
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
.+-|+-+|+|| +-|+|||.++..|..++..++-.|-
T Consensus 16 ~~~p~~ilVvG---MAGSGKTTF~QrL~~hl~~~~~ppY 51 (366)
T KOG1532 16 IQRPVIILVVG---MAGSGKTTFMQRLNSHLHAKKTPPY 51 (366)
T ss_pred CCCCCEEEEEE---CCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 56870799994---4778841399999999862369980
No 96
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=89.27 E-value=0.35 Score=29.01 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=26.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=||-|||-++.=|+-.|.++|+||.+|=
T Consensus 9 KGGVGKTTTavNLAaALA~~GkkVLlID 36 (292)
T PRK13230 9 KGGIGKSTTVCNLAAALSKSGKKVIVVG 36 (292)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9985789899999999998799599977
No 97
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.25 E-value=2 Score=23.61 Aligned_cols=209 Identities=15% Similarity=0.158 Sum_probs=99.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC-----CCCCCCHHHHHH
Q ss_conf 078887489999999985247315987604578777755871456788770421233220576-----346520122566
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-----TIVTSDRKIGVQ 128 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-----v~V~~~R~~~~~ 128 (338)
==|||||= .|+.-.|.... + +...-..+++.+...-+.++.+|..-+++..+ +++|......-.
T Consensus 49 ~TGSGKTl--AfllPil~~l~--~-------~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~ 117 (459)
T PRK11776 49 KTGSGKTA--AFGLGLLQKLD--V-------KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI 117 (459)
T ss_pred CCCCHHHH--HHHHHHHHHCC--C-------CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 99858999--99999998411--3-------6789859999675999999999999998505882599998993279999
Q ss_pred HHCCCCCCEEEECCC--CCCC---CC-CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHH----HHHHHHCCC-CHH
Q ss_conf 410245747997183--2234---41-230699996184335665537613652100255665----145442044-124
Q gi|254780401|r 129 MLLQEGVDIIIMDDG--FHSA---DL-QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSY----VDAILYVGN-KKN 197 (338)
Q Consensus 129 ~~~~~~~diiIlDDG--fQh~---~l-~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~r----ad~vi~~~~-~~~ 197 (338)
...+.++|+||.-=| ++|. .+ -.++..+++|--+ .+|=.|- ++.+..-+++ ...++++-. +++
T Consensus 118 ~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD-----~mLd~gF-~~~i~~Il~~~p~~rQ~~lfSAT~p~~ 191 (459)
T PRK11776 118 GSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-----RMLDMGF-QDAIDAIIRQAPARRQTLLFSATYPEG 191 (459)
T ss_pred HHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCH-----HHHCCCC-HHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 9974699999989589998875166322310389970624-----5432786-688999998688130268884568989
Q ss_pred ---HHHHHCCCCHH---------------HHHH----HHC----CCCCCCCCEEEEEEC-CCCHHHHHHHHHHHCCCCCC
Q ss_conf ---57763135011---------------1222----201----321116863898741-55357899988740100001
Q gi|254780401|r 198 ---VISSIKNKSVY---------------FAKL----KPR----LTFDLSGKKVLAFSG-IADTEKFFTTVRQLGALIEQ 250 (338)
Q Consensus 198 ---~~~~~~~~~i~---------------~~~~----~~~----~~~~l~~k~v~afsG-Ia~P~~F~~~L~~~g~~i~~ 250 (338)
....+...|+. +... +.. ........+.+.||. ...-+...+.|++.|+...
T Consensus 192 i~~l~~~~l~~p~~i~v~~~~~~~~I~q~~~~v~~~~K~~~L~~ll~~~~~~~~IIFcntk~~v~~l~~~L~~~g~~~~- 270 (459)
T PRK11776 192 IAAISARFQRDPVEVKVESTHDDSTIEQRFYEVDPDERLPALQRLLLHYRPESCVVFCNTKKECQEVADALNAQGFSAL- 270 (459)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEE-
T ss_conf 9999999778989999678777986379999977187899999999736876603761748999999999986799689-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 221433234898999999997564798-7998546
Q gi|254780401|r 251 CYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 251 ~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
.=|-.-+.++=.+..+..++... .+|||.=
T Consensus 271 ----~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDv 301 (459)
T PRK11776 271 ----ALHGDLEQRDRDQVLVRFANRSCSVLVATDV 301 (459)
T ss_pred ----EEECCCCHHHHHHHHHHHHCCCCCEEEEHHH
T ss_conf ----9879999999999999997799979988104
No 98
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.22 E-value=0.34 Score=29.12 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+|||-++..|++.|...|.++++||=
T Consensus 8 SgSGKTT~a~~L~~~l~~~~~~~~vis~ 35 (179)
T cd02028 8 SGSGKTTFAKKLSNQLRVNGIGPVVISL 35 (179)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9778999999999998464885399954
No 99
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=89.09 E-value=0.37 Score=28.91 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCC-
Q ss_conf 78887489999999985247-3159876045787777558714567887704212332205763465201225664102-
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKN-LKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQ- 132 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g-~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~- 132 (338)
||||||-++..|+..|.+++ ++|-++-- |++.+-+..-|=|.- +..++..|-.--+....
T Consensus 9 GG~GKTtiaalll~~l~~~~~~~VLvVDa------------Dpd~nL~~~LGve~~------~~~lg~~~e~~~k~~~a~ 70 (255)
T COG3640 9 GGVGKTTIAALLLKRLLSKGGYNVLVVDA------------DPDSNLPEALGVEEP------MKYLGGKRELLKKRTGAE 70 (255)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEC------------CCCCCHHHHCCCCCC------CCCCCCHHHHHHHHHCCC
T ss_conf 97658999999999998648954999948------------999990776299998------755300899999986147
Q ss_pred CC---C----CEEEECCCCCCCC-CCCEEEEEEECCCCCCCCCCCCCCHHH-HHCCHHHHH--HHHHHHH
Q ss_conf 45---7----4799718322344-123069999618433566553761365-210025566--5145442
Q gi|254780401|r 133 EG---V----DIIIMDDGFHSAD-LQADFSLIVVNSHRGLGNGLVFPAGPL-RVPLSRQLS--YVDAILY 191 (338)
Q Consensus 133 ~~---~----diiIlDDGfQh~~-l~rdl~Ivl~d~~~~~gn~~llPaGpL-REp~~~~l~--rad~vi~ 191 (338)
.+ . .=...||=+|-+. -..|++++++-.-.-+|.|+.-|+|-| |+-+. .|. +-|.||+
T Consensus 71 ~~~~~~~~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~-~l~~~~~e~Viv 139 (255)
T COG3640 71 PGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLR-HLILNRYEVVIV 139 (255)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCEEEE
T ss_conf 899955300137543351698850068800799525567997431627899999999-975166748999
No 100
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.80 E-value=0.97 Score=25.89 Aligned_cols=11 Identities=45% Similarity=0.555 Sum_probs=3.8
Q ss_pred CCCCHHHHHHH
Q ss_conf 88748999999
Q gi|254780401|r 57 TGKTPTALAIA 67 (338)
Q Consensus 57 tGKTP~v~~l~ 67 (338)
.|||-++.-||
T Consensus 359 vGKTTT~aKlA 369 (557)
T PRK12727 359 AGKTTTIAKLA 369 (557)
T ss_pred CCCHHHHHHHH
T ss_conf 67311799999
No 101
>PRK13695 putative NTPase; Provisional
Probab=88.58 E-value=0.98 Score=25.87 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEE-EEEECC
Q ss_conf 788874899999999852473159-876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPG-FLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~-ilsRGY 84 (338)
=|.|||-++.-+++.|++.|++++ +.+.-+
T Consensus 12 PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Ev 42 (174)
T PRK13695 12 PGVGKTTLVLKIAELLAREGYKVGGFITEEV 42 (174)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 9988999999999998636961746995256
No 102
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=88.47 E-value=0.43 Score=28.40 Aligned_cols=125 Identities=22% Similarity=0.328 Sum_probs=70.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHH--HH-HC----CC-CC-----
Q ss_conf 0788874899999999852473159876045787777558714567--88770421233--22-05----76-34-----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLL--LA-RR----AV-TI----- 118 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~l--la-~~----~p-v~----- 118 (338)
+=|.||.-++..|...|.++|++||||. ||+.+- -=.--||---| || ++ .| ++
T Consensus 46 ~PGaGKSTl~~~l~~~lrRrG~~VaViA------------vDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~p 113 (333)
T TIGR00750 46 VPGAGKSTLVEKLIMELRRRGLKVAVIA------------VDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMP 113 (333)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE------------ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 8888577799999899976597689998------------8797597551454568877544222233228985676776
Q ss_pred -------CCCCHHHHHHHHCCCCCCEEEECC-CC-CC-CCCCC--EEEEEEECCCCCCCCCC-CCCCHHHHHCCHHHHHH
Q ss_conf -------652012256641024574799718-32-23-44123--06999961843356655-37613652100255665
Q gi|254780401|r 119 -------VTSDRKIGVQMLLQEGVDIIIMDD-GF-HS-ADLQA--DFSLIVVNSHRGLGNGL-VFPAGPLRVPLSRQLSY 185 (338)
Q Consensus 119 -------V~~~R~~~~~~~~~~~~diiIlDD-Gf-Qh-~~l~r--dl~Ivl~d~~~~~gn~~-llPaGpLREp~~~~l~r 185 (338)
++..=.+.+..+...|+|+||..= |- |. -.+-+ |--|+|.=+ +-|.+- -+=+|- +.=
T Consensus 114 trG~lGGls~at~~~~~lldA~G~DVI~vETVGVGQSEVdi~~~aDT~v~v~~p--g~GDd~Q~iKaG~--------mEi 183 (333)
T TIGR00750 114 TRGSLGGLSKATRELVKLLDAAGYDVILVETVGVGQSEVDIINMADTFVVVTIP--GTGDDVQGIKAGV--------MEI 183 (333)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCEEEEEECC--CCCCHHHHHHHHH--------HEE
T ss_conf 667525787999999999986389879998415752487887341505898548--8783466665443--------023
Q ss_pred HHHHHHCCCCHHHHH
Q ss_conf 145442044124577
Q gi|254780401|r 186 VDAILYVGNKKNVIS 200 (338)
Q Consensus 186 ad~vi~~~~~~~~~~ 200 (338)
||++++||.+.+...
T Consensus 184 aDI~VVNKaD~~~a~ 198 (333)
T TIGR00750 184 ADIYVVNKADGEGAE 198 (333)
T ss_pred EEEEEEECCCCCCHH
T ss_conf 248788168876658
No 103
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=88.21 E-value=2 Score=23.65 Aligned_cols=225 Identities=14% Similarity=0.189 Sum_probs=114.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCH
Q ss_conf 98899823000788874899999999852473159876045787777558714567887704212332205763465201
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDR 123 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R 123 (338)
+-+|||||=..=|-=.--=..||++.|.++|+++.-+. .|||++--|
T Consensus 4 a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~---------------------~VgD~~~~I------------ 50 (255)
T COG1058 4 AEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARIT---------------------TVGDNPDRI------------ 50 (255)
T ss_pred EEEEEECCCEECCCEECCHHHHHHHHHHHCCCEEEEEE---------------------ECCCCHHHH------------
T ss_conf 89999714221474034229999999996496189999---------------------639999999------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH--HHHHH
Q ss_conf 2256641024574799718322344123069999618433566553761365210025566514544204412--45776
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK--NVISS 201 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~--~~~~~ 201 (338)
.++.+.+.+. +|+||+-.|+==. +=|+.--. .-+-||-...+=.- +++.-.......... .....
T Consensus 51 ~~~l~~a~~r-~D~vI~tGGLGPT--~DDiT~e~--vAka~g~~lv~~~~--------al~~i~~~~~~r~~~~~~~~~K 117 (255)
T COG1058 51 VEALREASER-ADVVITTGGLGPT--HDDLTAEA--VAKALGRPLVLDEE--------ALAMIEEKYAKRGREMTEANRK 117 (255)
T ss_pred HHHHHHHHHC-CCEEEECCCCCCC--CCHHHHHH--HHHHHCCCCCCCHH--------HHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9999999718-9989987985899--62768999--99982998566999--------9999999998528888855664
Q ss_pred HCCCCH----H--HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC---------CCCCHHHHH
Q ss_conf 313501----1--1222201321116863898741553578999887401000012214332---------348989999
Q gi|254780401|r 202 IKNKSV----Y--FAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDH---------AHLSDKKIA 266 (338)
Q Consensus 202 ~~~~~i----~--~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDH---------h~ys~~dl~ 266 (338)
....|- . .....|.......|+.++++-| -|.-|..|+++.-..... ..|++- .-+.++++.
T Consensus 118 ~A~~P~Ga~~l~NpvG~APG~~v~~~~~~v~~lPG--vP~Em~~M~e~~~~~~l~-~~~~~~~~~~~~~~~~gi~ES~la 194 (255)
T COG1058 118 QAMLPEGAEVLDNPVGTAPGFVVEGNGKNVYVLPG--VPSEMKPMFENVLLPLLT-GRFPSTKYYSRVLRVFGIGESSLA 194 (255)
T ss_pred HCCCCCCCEECCCCCCCCCEEEEECCCEEEEEECC--CCHHHHHHHHHHHHHHHH-CCCCCCCEEEEEEEECCCCHHHHH
T ss_conf 10478988757787776873698228818999089--979999999987777741-147887069999998687757878
Q ss_pred HHHHHHHHCC--CEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 9999756479--879985466343823334411122051788769895787899999999999986
Q gi|254780401|r 267 YLLDQAQQKG--LILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVFENPDDLTNLVEMTVVSFA 330 (338)
Q Consensus 267 ~i~~~a~~~~--~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~~~~~~l~~~l~~~i~~~~ 330 (338)
..++...... ..+=.-.|+.-.- .. .+.|..+-++++...+.++....+..
T Consensus 195 ~~L~~i~~~~~~~~i~s~p~~~~~~-----------~~--~~~i~~~~~~~~~~~~~~~~~~~~i~ 247 (255)
T COG1058 195 PTLKDLQDEQPNVTIASYPKDGEVR-----------LR--ELVIRAEARDEEEADALLRWLEGRLR 247 (255)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCEE-----------CC--CEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 9999998508997798258877321-----------13--15899753789999999999999999
No 104
>PRK07667 uridine kinase; Provisional
Probab=87.91 E-value=0.51 Score=27.87 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=29.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 988998230007888748999999998524731598760
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.-||.| -=..|+|||-++..|++.|.+.|..+.+++-
T Consensus 14 r~iIgI--aG~sgSGKTTla~~L~~~l~~~~~~v~v~~~ 50 (190)
T PRK07667 14 RFILGI--DGLSRSGKTTFVANLKENMKQEGIPFHIFHI 50 (190)
T ss_pred EEEEEE--ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 699997--7989788999999999998665983799966
No 105
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=87.87 E-value=0.67 Score=27.03 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8898899823000788874899999999852473159876045
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-++.||. ++|=.|||-++.++++.|...|.+.|+|+==|
T Consensus 86 ~~l~viG----vTGTNGKTtt~~li~~~l~~~G~~tgliGT~g 124 (494)
T TIGR01085 86 KKLKVIG----VTGTNGKTTTTSLIAQLLELLGKKTGLIGTIG 124 (494)
T ss_pred CCEEEEE----EEECCCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 2516899----97128744899999999986797089986545
No 106
>PRK10689 transcription-repair coupling factor; Provisional
Probab=87.46 E-value=2.6 Score=22.83 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 8999999997564798-7998546
Q gi|254780401|r 262 DKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 262 ~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
.++.+.+.+..++... .+|-|-+
T Consensus 689 ~ke~~~i~~~l~~G~idIvIGTH~ 712 (1148)
T PRK10689 689 AKEQTQILAEAAEGKIDILIGTHK 712 (1148)
T ss_pred HHHHHHHHHHHHCCCCCEEEHHHH
T ss_conf 999999999986699877620488
No 107
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=87.25 E-value=0.53 Score=27.77 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE-EECCC
Q ss_conf 78887489999999985247315987-60457
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL-SRGYG 85 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg 85 (338)
-+||||-++..|++++.++|++|+++ .=.-|
T Consensus 9 ~~sGKttl~~~L~~~~~~~g~~~~~~~~~d~g 40 (122)
T pfam03205 9 KDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHG 40 (122)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99989999999999999879944899989999
No 108
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=87.24 E-value=1.6 Score=24.33 Aligned_cols=181 Identities=16% Similarity=0.193 Sum_probs=90.2
Q ss_pred EEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHHCCCCCCEEEECCC-----CCCCCC-CCEEEEEEEC-C
Q ss_conf 5871456788770421233220576----346520122566410245747997183-----223441-2306999961-8
Q gi|254780401|r 92 FRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQMLLQEGVDIIIMDDG-----FHSADL-QADFSLIVVN-S 160 (338)
Q Consensus 92 ~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~~~~~~diiIlDDG-----fQh~~l-~rdl~Ivl~d-~ 160 (338)
+++.+...-+.++-++...+++... +++|.-....-....+.++|++|.-=| ++...+ -+++..+++| +
T Consensus 79 LIl~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEA 158 (417)
T PRK11192 79 LILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 158 (417)
T ss_pred EEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 99947199999999999986400573059985687879999998369998997860777788636701045748999675
Q ss_pred CCCCCCCCCCCCHHHHHCCHHHH----HHHHHHHHCCCC--H---HHHHHHCCCCHHH------------------HH-H
Q ss_conf 43356655376136521002556----651454420441--2---4577631350111------------------22-2
Q gi|254780401|r 161 HRGLGNGLVFPAGPLRVPLSRQL----SYVDAILYVGNK--K---NVISSIKNKSVYF------------------AK-L 212 (338)
Q Consensus 161 ~~~~gn~~llPaGpLREp~~~~l----~rad~vi~~~~~--~---~~~~~~~~~~i~~------------------~~-~ 212 (338)
.+-+..|+ ++.+..-+ .+...++++-.- . .......+.|+.. .. .
T Consensus 159 D~mld~gF-------~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 231 (417)
T PRK11192 159 DRMLDMGF-------AQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLNDPVEVDAEPSRRERKKIHQWYYRADDL 231 (417)
T ss_pred CCCCCCCC-------HHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCH
T ss_conf 52111354-------78999998647677238999732684789999998367988999646766667436999993768
Q ss_pred --HHCCC----CCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf --20132----111686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 213 --KPRLT----FDLSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 213 --~~~~~----~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
+.... ......+++.|| ....-+.+...|.+.|+.... =|-.-+.++-.++++..++... .+|||.=
T Consensus 232 ~~k~~~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~-----lhg~l~q~~R~~~l~~F~~g~~~vLVaTDv 306 (417)
T PRK11192 232 EHKTALLCHLLKQEEVTRSIVFVRTRERVHELAGWLRKAGINCCY-----LEGEMVQKKRNEAIKRLTDGRVNVLVATDV 306 (417)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEE-----ECCCCCHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 999999999985347665215311246676898865314883575-----400179999999999997699989998124
No 109
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=87.21 E-value=0.31 Score=29.42 Aligned_cols=219 Identities=17% Similarity=0.226 Sum_probs=105.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCEEEECCC--------CCHHHHCCHH------HHHHHCCC---
Q ss_conf 788874899999999852473159876045787-77755871456--------7887704212------33220576---
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK-SRISFRVDLEK--------HSAYDVGDEP------LLLARRAV--- 116 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~-~~~~~~v~~~~--------~~~~~vGDEp------~lla~~~p--- 116 (338)
--+|||=+|..||+.|.++||+|+= .|++ .+-.-.|..++ .=|.-+|=|| .||+-+..
T Consensus 8 S~AGKs~l~AaLCRiL~rrGy~VAP----FKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkgdf~S 83 (502)
T TIGR00313 8 SSAGKSLLTAALCRILARRGYRVAP----FKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKGDFTS 83 (502)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 5402899999999998527881278----501101013331137875513768999863878862348710167888466
Q ss_pred -CCCCCCHHHHH---HHHCCCCCCE--EEECCCCCCCCCCCEEEEEEECCCCCCC--CCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf -34652012256---6410245747--9971832234412306999961843356--65537613652100255665145
Q gi|254780401|r 117 -TIVTSDRKIGV---QMLLQEGVDI--IIMDDGFHSADLQADFSLIVVNSHRGLG--NGLVFPAGPLRVPLSRQLSYVDA 188 (338)
Q Consensus 117 -v~V~~~R~~~~---~~~~~~~~di--iIlDDGfQh~~l~rdl~Ivl~d~~~~~g--n~~llPaGpLREp~~~~l~rad~ 188 (338)
|+|.-.-+... +|- +...|. =.-...| -.|.+++|+|++..-=+.- |=+===.-.|| +. .+.+||+
T Consensus 84 Qviv~G~a~g~~~~~~Y~-~~~~d~~~~~i~eSl--e~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~--iA-~~~~A~~ 157 (502)
T TIGR00313 84 QVIVHGRAVGDMNAQEYY-KNKVDFLLKAIKESL--EILAEEYDLVVIEGAGSPAEINLKERDLANMR--IA-ELADADV 157 (502)
T ss_pred EEEEEEECCCCCCHHHHH-HHHHHHHHHHHHHHH--HHHHCCCCEEEEECCCCCCCCCCCCCCCHHHH--HH-HHCCCCE
T ss_conf 789841124667615677-799999999999999--87520288899826887100053315722478--98-6439767
Q ss_pred HHHCCCCH-HHHHHHCC-----CCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 44204412-45776313-----5011122220132111686389874155357899988740100001221433234898
Q gi|254780401|r 189 ILYVGNKK-NVISSIKN-----KSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSD 262 (338)
Q Consensus 189 vi~~~~~~-~~~~~~~~-----~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~ 262 (338)
+++--=+. -.+.++.. .+-...-+|=-.++.++|..=++-+||-.=|.. -|+-+..-+.|-|.-.|++
T Consensus 158 iLvADIDRGGVFAsi~GTl~LL~~~~r~liKG~vINkfRG~~~vL~~GI~~lEel------TGiPVLGv~PY~~~l~lp~ 231 (502)
T TIGR00313 158 ILVADIDRGGVFASIYGTLKLLPEEERKLIKGIVINKFRGNVDVLESGIEKLEEL------TGIPVLGVLPYDENLKLPE 231 (502)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEECEEEECCCCCCHHHHHHHHHHHHHH------CCCCEEEEEECCCCCCCCH
T ss_conf 9997507774324337466618834575003068835468724434456899885------4842344650125776751
Q ss_pred HHHHHHHHHHHHCCC---EEEECHHHHHHCCCCCC
Q ss_conf 999999997564798---79985466343823334
Q gi|254780401|r 263 KKIAYLLDQAQQKGL---ILVTTAKDAMRLHKRPG 294 (338)
Q Consensus 263 ~dl~~i~~~a~~~~~---~iiTTEKD~VKL~~~~~ 294 (338)
+|=..|.+....-.+ .|. -||||...+
T Consensus 232 EDS~~l~~~~~~G~~~dirv~-----v~RLpriSN 261 (502)
T TIGR00313 232 EDSLDLEERKARGSKKDIRVG-----VVRLPRISN 261 (502)
T ss_pred HHHHHHHHHCCCCCCCCEEEE-----EEECCCCCC
T ss_conf 310568861578997504899-----985376356
No 110
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=87.14 E-value=0.57 Score=27.54 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCEEE--ECCCCCHHHHCCHHHHHHHCCCC----CCCCCHHH-
Q ss_conf 78887489999999985247315987604578777--75587--14567887704212332205763----46520122-
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR--ISFRV--DLEKHSAYDVGDEPLLLARRAVT----IVTSDRKI- 125 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~--~~~~v--~~~~~~~~~vGDEp~lla~~~pv----~V~~~R~~- 125 (338)
=|+|||-++-+|.+.|.++||++-+| =|=+=+.. ..+-. .....+-.-+|-=+-||++.+-+ +|++=|..
T Consensus 28 SGsGKsTiA~Al~~~L~~~G~~~~~L-DGDnvR~gL~~dLGFS~~DR~eNIRRigEVa~L~~~~G~i~ltsfISPyR~~R 106 (187)
T TIGR00455 28 SGSGKSTIANALEKKLEKKGYRVYVL-DGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLLVRNGVIVLTSFISPYRADR 106 (187)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEE-CCCEEECCCCCCCCCCHHHHCCCCCEEHHHHHHHHHCCEEEEEEEECCCHHHH
T ss_conf 85635799999999999669749997-58634247788888885670568835326467776479389984217766678
Q ss_pred -HHHHHCCC
Q ss_conf -56641024
Q gi|254780401|r 126 -GVQMLLQE 133 (338)
Q Consensus 126 -~~~~~~~~ 133 (338)
-++...+.
T Consensus 107 ~~vR~~~~~ 115 (187)
T TIGR00455 107 QMVRELIEE 115 (187)
T ss_pred HHHHHHHHC
T ss_conf 999887540
No 111
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.12 E-value=0.61 Score=27.34 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHCC-CEEEECHHHHHHCC
Q ss_conf 489899999999756479-87998546634382
Q gi|254780401|r 259 HLSDKKIAYLLDQAQQKG-LILVTTAKDAMRLH 290 (338)
Q Consensus 259 ~ys~~dl~~i~~~a~~~~-~~iiTTEKD~VKL~ 290 (338)
.|+..++-.+++.--..+ ..||||-=+.--|.
T Consensus 262 ~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~ 294 (330)
T PRK06835 262 EFSKTELFNLINKRLLMNKKMIISTNLSLEELL 294 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
T ss_conf 689999999999998679997998899989999
No 112
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.97 E-value=1.3 Score=25.00 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=27.6
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.+.+++-.|-- |||||-++..+++.+...++.+..++
T Consensus 18 ~~~~ill~Gpp---GtGKT~la~~ia~~~~~~~~~~~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPP---GTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCEEEEECCC---CCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99808998999---98865999999997121379827854
No 113
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=86.80 E-value=0.55 Score=27.66 Aligned_cols=25 Identities=44% Similarity=0.466 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
||||||-++..|+..|.+. |++..+
T Consensus 11 GGtGKTTva~~la~~l~~~-~~~~l~ 35 (284)
T COG1149 11 GGTGKTTVAANLAVLLGDK-YKLVLA 35 (284)
T ss_pred CCCCHHHHHHHHHHHHCCC-CCEEEE
T ss_conf 8777022899999983665-224777
No 114
>PRK09183 transposase/IS protein; Provisional
Probab=86.66 E-value=1.1 Score=25.60 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.1
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-.||.+|+- |||||=++.+|+...-++|++|-..+
T Consensus 101 ~~Nvil~G~~---GtGKThLA~Alg~~A~~~G~~v~f~~ 136 (258)
T PRK09183 101 NENIVLLGPS---GVGKTHLAIALGYEAVRAGIKVRFTT 136 (258)
T ss_pred CCCEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8867998999---98689999999999998799399978
No 115
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.16 E-value=0.89 Score=26.16 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88874899999999852473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|+|||=+..++|+.|.++|+.+.+++
T Consensus 167 G~GKTyL~~aian~La~~g~~v~~v~ 192 (306)
T PRK08939 167 GVGKTYLLAAIANELAKKGVSSTLVH 192 (306)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99899999999999998699299987
No 116
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=86.15 E-value=2.1 Score=23.49 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
....+||. .+|-.|||-++.+++..|...|+++++++
T Consensus 97 ~~~l~vIg----ITGTnGKTTt~~~l~~iL~~~g~~~~~ig 133 (481)
T PRK00139 97 SDKLKLIG----VTGTNGKTTTAYLIAQILRLLGKKAALIG 133 (481)
T ss_pred HHCCCEEE----EECCCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 43180899----95899843499999999987498631430
No 117
>KOG3022 consensus
Probab=86.09 E-value=1.5 Score=24.52 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=64.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCEEEECCCCCHHHHCCHH-------------HHHHH--CCCCC
Q ss_conf 78887489999999985247315987604-5787777558714567887704212-------------33220--57634
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG-YGRKSRISFRVDLEKHSAYDVGDEP-------------LLLAR--RAVTI 118 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG-Yg~~~~~~~~v~~~~~~~~~vGDEp-------------~lla~--~~pv~ 118 (338)
||-||+-++.-||..|...|++++++-=- ||.......-+......-..-|+-| +|+.. ..++|
T Consensus 57 GGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIw 136 (300)
T KOG3022 57 GGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIW 136 (300)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEEEEEEEECCCCCCCCEE
T ss_conf 87761689999999986179717997503558770534087774455048874144443876788756432888766265
Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf 652012256641024574799718322344123069999618433566553761365210025566514544204412
Q gi|254780401|r 119 VTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 119 V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
-++.....++.+++. +| .-.+|.+++|.--+-+..++-=..++|+. .-+||+|...+
T Consensus 137 RGpkk~~~I~qflk~-vd-------------wg~lDyLviDtPPGtsDehls~~~~~~~~-------~gAviVTTPQ~ 193 (300)
T KOG3022 137 RGPKKNSMIKQFLKD-VD-------------WGELDYLVIDTPPGTSDEHLSLVQFLRES-------DGAVIVTTPQE 193 (300)
T ss_pred ECHHHHHHHHHHHHC-CC-------------CCCCCEEEEECCCCCCHHHHHEEECCCCC-------CCEEEEECCHH
T ss_conf 454788999999716-88-------------77767799958999870143100004455-------73499817205
No 118
>PRK13768 GTPase; Provisional
Probab=85.93 E-value=0.72 Score=26.82 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
++.|| .-|+|||-++..+.++++..|.+++|+-
T Consensus 5 ~~ViG---paGSGKsT~~~~l~~~l~~~~r~~~vvN 37 (253)
T PRK13768 5 VFFLG---TAGSGKTTLVGALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99989---9999889999999999997699759997
No 119
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=85.82 E-value=0.75 Score=26.71 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7888748999999998524731598760457
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
||.|||.++..|.--|..+|+|++++-=--|
T Consensus 12 GGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 12 GGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8767431067789999973985999966767
No 120
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=85.55 E-value=0.56 Score=27.57 Aligned_cols=49 Identities=33% Similarity=0.349 Sum_probs=31.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH
Q ss_conf 9889982300078887489999999985247315987604578777755871456788770421233
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL 110 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l 110 (338)
-||=-.|= -|||||-+++.+|+.+ -+|+++-.|=. +-.++.-||++.=-
T Consensus 22 ~PvHl~GP---aG~GKT~LA~hvA~~r----~RPV~l~~Gd~-----------eL~~~DLvG~~~g~ 70 (265)
T TIGR02640 22 YPVHLRGP---AGTGKTTLAMHVARKR----DRPVVLINGDA-----------ELTTSDLVGSYAGY 70 (265)
T ss_pred CCEEEECC---CCCCHHHHHHHHHHHC----CCCEEEEECCC-----------CCCCCCCCCCCCCC
T ss_conf 86674478---8855689999999736----89689986582-----------32654423154675
No 121
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=85.40 E-value=0.52 Score=27.81 Aligned_cols=37 Identities=22% Similarity=0.471 Sum_probs=28.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+|-|.|.- |..|+|||-+|..|++.|+++|++|+--.
T Consensus 3 ~p~lmI~g-t~S~~GKT~vt~gL~r~l~~rG~~VapFK 39 (451)
T PRK01077 3 MPALVIAA-PASGSGKTTVTLGLMRALRRRGLRVQPFK 39 (451)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88799986-89999789999999999996879457535
No 122
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.33 E-value=0.6 Score=27.39 Aligned_cols=41 Identities=37% Similarity=0.399 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEE-EEEEC--CCCCCCCCEEEE
Q ss_conf 788874899999999852473159-87604--578777755871
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPG-FLSRG--YGRKSRISFRVD 95 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~-ilsRG--Yg~~~~~~~~v~ 95 (338)
=|.|||-++..+++.|++.|++++ +++-- -|++--|.-+++
T Consensus 14 PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivd 57 (179)
T COG1618 14 PGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVD 57 (179)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEE
T ss_conf 98458999999999998559665139831142088275159998
No 123
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=85.23 E-value=0.82 Score=26.43 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-++..+.+++...|.++.++-
T Consensus 5 aGSGKTT~~~~l~~~l~~~~r~~~vvN 31 (234)
T pfam03029 5 AGSGKTTFVGALSEILPLRGRSVYVVN 31 (234)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 989889999999999997799759997
No 124
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=85.20 E-value=0.89 Score=26.18 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCH----HHHCCH---HHHHHHCCCCC---CCCCHH
Q ss_conf 78887489999999985247315987604578777755871456788----770421---23322057634---652012
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSA----YDVGDE---PLLLARRAVTI---VTSDRK 124 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~----~~vGDE---p~lla~~~pv~---V~~~R~ 124 (338)
||||||-+++.+|-.-.++|.+++.|= +.|. =|+ .-++|. |--...+.-|+ -=.+=.
T Consensus 21 ~G~GKTn~c~~~a~~a~~~Gk~v~YiD------TEGG-------LS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~ 87 (223)
T TIGR02237 21 PGSGKTNICLILAVNAARQGKKVVYID------TEGG-------LSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQE 87 (223)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE------CCCC-------CHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHH
T ss_conf 998678999999999986189589996------2898-------328999998630588988884153552353567899
Q ss_pred HHHH----HHCCC--CCCEEEECCCCCCCCCCCE
Q ss_conf 2566----41024--5747997183223441230
Q gi|254780401|r 125 IGVQ----MLLQE--GVDIIIMDDGFHSADLQAD 152 (338)
Q Consensus 125 ~~~~----~~~~~--~~diiIlDDGfQh~~l~rd 152 (338)
+|++ .+.++ .+++||+|=-=.||++++.
T Consensus 88 ~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~ 121 (223)
T TIGR02237 88 VAIQKTSKLIDRDGDKADLVVVDSFTALYRLERS 121 (223)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCC
T ss_conf 9999999998606883314888153345420257
No 125
>PRK12377 putative replication protein; Provisional
Probab=85.17 E-value=0.92 Score=26.06 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=27.7
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-+|-+|+- |||||=++.+|+..+.++|++|..++
T Consensus 103 NlIf~G~p---GtGKTHLA~AIg~~a~~~G~sVlF~t 136 (248)
T PRK12377 103 NFVFSGKP---GTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 08998999---98788999999999998799699988
No 126
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.66 E-value=0.63 Score=27.23 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 788874899999999852473159876045787
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
-|+|||-+.--|++.|++.++++..++.-|.+-
T Consensus 10 PgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~ 42 (261)
T COG4088 10 PGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG 42 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 998801789999999997200112132014541
No 127
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=84.49 E-value=1.7 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCEE-ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 2300-078887489999999985247315987604
Q gi|254780401|r 50 GGFV-MGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 50 GNit-vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
++++ +||+|| |=.|++++|...||.|.|+.+.
T Consensus 99 ~~i~IIGG~G~--mG~~F~~~f~~sGy~V~ild~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQ--LGRLFAKMLTLSGYQVRILEKD 131 (374)
T ss_pred CEEEEEECCCC--HHHHHHHHHHHCCCEEEEECCC
T ss_conf 71799807982--7799999999679879961644
No 128
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=84.38 E-value=1 Score=25.77 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=25.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 078887489999999985247315987604578
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+-|+|||-.+..|.++|+++|++ ++++|-=|+
T Consensus 11 iDGaGKTT~~~~L~~~l~~~g~~-v~~trEP~~ 42 (208)
T COG0125 11 IDGAGKTTQAELLKERLEERGIK-VVLTREPGG 42 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCE-EEEEECCCC
T ss_conf 88898899999999999982980-799868999
No 129
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=84.32 E-value=0.97 Score=25.90 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
||-|||-++.=|+-.|.++|+||.+|=
T Consensus 10 GGVGKSTTt~NLaAALA~~GkkVL~Ig 36 (273)
T PRK13232 10 GGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 866588789999999997799699989
No 130
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.31 E-value=1.8 Score=24.03 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 889889982300078887489999999985247315987
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.+.|+|+| +|-.|||-+|.++...|++.|+++.+.
T Consensus 100 ~~~~~IaI----TGTNGKTTTt~ll~~iL~~~g~~~~~~ 134 (418)
T PRK00683 100 QRYPSLGI----TGSTGKTTTILFLEHLLRTLGIPAFAM 134 (418)
T ss_pred CCCCEEEE----ECCCCCEEHHHHHHHHHHHCCCCCEEE
T ss_conf 47987999----768986609999999998679981888
No 131
>PRK06696 uridine kinase; Validated
Probab=84.26 E-value=1 Score=25.74 Aligned_cols=40 Identities=20% Similarity=0.077 Sum_probs=30.4
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.+.-|+| ||===..|+|||-++..|++.|.+.|..+.+++
T Consensus 22 ~p~rpl~-VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~ 61 (227)
T PRK06696 22 NLTRPLR-VAIDGITASGKTTFANELAEEIKKRGRPVIRAS 61 (227)
T ss_pred CCCCCEE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9998689-997789987879999999999974699489971
No 132
>PRK06526 transposase; Provisional
Probab=84.17 E-value=1.7 Score=24.25 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-.||.+|+- |||||=++.+|+...-++|++|..++
T Consensus 98 ~~Nvil~G~~---GtGKThLA~Alg~~A~~~G~~v~f~~ 133 (254)
T PRK06526 98 KENVVFLGPP---GTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred CCCEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8878998999---98689999999999998699679987
No 133
>PRK08181 transposase; Validated
Probab=84.10 E-value=1.7 Score=24.12 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=30.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-.||.+|+- |||||=++.+|+...-++|++|-..+
T Consensus 107 ~Nvil~Gp~---GtGKThLA~Alg~~A~~~G~~V~f~~ 141 (269)
T PRK08181 107 ANLLLFGPP---GGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 708998999---98788999999999998799399978
No 134
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.65 E-value=1.7 Score=24.10 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78887489999999985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
-|+|||-+..-++.....+|.++..++=+
T Consensus 8 ~g~GKttl~~~~~~~~~~~~~~~~~~~~e 36 (165)
T cd01120 8 TGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99989999999999987639979999866
No 135
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=83.62 E-value=3.9 Score=21.58 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCEEE-CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCC
Q ss_conf 23000-78887489999999985247315987604578777755871456
Q gi|254780401|r 50 GGFVM-GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEK 98 (338)
Q Consensus 50 GNitv-GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~ 98 (338)
|=|.. ||+|||=+++.+|=.... |... +-.+-.....+.++....+
T Consensus 4 ~~l~g~gG~GKS~lal~lAl~vA~-G~~~--~g~~~~~~~~G~Vly~~~E 50 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMAL-GKNL--FGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHC-CCCC--CCCCCCCCCCCEEEEEECC
T ss_conf 999808998889999999999975-9965--6898546877619999788
No 136
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=83.37 E-value=1.9 Score=23.90 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=11.0
Q ss_pred HHHHHHHCCCCEEEEEECCCC
Q ss_conf 999985247315987604578
Q gi|254780401|r 66 IAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 66 l~~~l~~~g~~~~ilsRGYg~ 86 (338)
++..|.+.|+++..|.=||+.
T Consensus 91 ~~~~L~~~G~~v~~l~GGYKa 111 (311)
T TIGR03167 91 LAWLLAQIGFRVPRLEGGYKA 111 (311)
T ss_pred HHHHHHHCCCCCCCCCCCHHH
T ss_conf 999999859984315783899
No 137
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=83.26 E-value=1.2 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=30.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-.++-.|+- |||||=++.+++..+-++|+++..++
T Consensus 48 ~Nlll~G~~---GtGKThLA~Ai~~~~~~~g~~v~f~~ 82 (178)
T pfam01695 48 ENLLLLGPP---GVGKTHLACALGHQACRAGYSVLFTR 82 (178)
T ss_pred CCEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 768998999---98789999999999998698599996
No 138
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=83.26 E-value=1.1 Score=25.53 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHH-HHHHHHCCCCEEEE
Q ss_conf 788874899999-99985247315987
Q gi|254780401|r 55 GGTGKTPTALAI-AKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l-~~~l~~~g~~~~il 80 (338)
||+|||-++.-| +-.++.+|.++.++
T Consensus 12 GGvGKTtitanlga~~~~~~~k~V~~i 38 (262)
T COG0455 12 GGVGKTTITANLGAALAALGGKVVLLI 38 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 875689899869999996489769999
No 139
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=83.07 E-value=1.2 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=25.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 078887489999999985247315987
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
=||-|||-++.=|+-.|.+.|+||.+|
T Consensus 9 KGGVGKSTtt~NLaAALA~~GkkVl~I 35 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 985547678999999999789979998
No 140
>PRK13974 thymidylate kinase; Provisional
Probab=82.79 E-value=0.64 Score=27.17 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=27.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCC----CEEEEEECCCCCC
Q ss_conf 0788874899999999852473----1598760457877
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNL----KPGFLSRGYGRKS 88 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~----~~~ilsRGYg~~~ 88 (338)
+-|+|||-.+..|+++|.+.|+ ..++.+|--|+..
T Consensus 11 iDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~rePg~t~ 49 (212)
T PRK13974 11 IDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTL 49 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 999989999999999998658753586157714999980
No 141
>PRK08309 short chain dehydrogenase; Provisional
Probab=82.70 E-value=1.4 Score=24.83 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=23.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|++|||| |-.-+...|.++|+.|.|+.|-+-
T Consensus 4 LVIGGTG---ML~~vs~~L~~qg~~VsiiaR~~~ 34 (182)
T PRK08309 4 LVIGGTG---MLKRVSLWLCEEGFHVSIIARDEV 34 (182)
T ss_pred EEECCCH---HHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 9972417---559999999737999999944878
No 142
>PTZ00110 helicase; Provisional
Probab=82.63 E-value=1.3 Score=24.97 Aligned_cols=215 Identities=18% Similarity=0.271 Sum_probs=104.4
Q ss_pred CCEEEECCEEE----CCCCCC-----HHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--EEEECCCCCHHHHCCHHHHHH
Q ss_conf 98899823000----788874-----8999999998524731598760457877775--587145678877042123322
Q gi|254780401|r 44 IPVICVGGFVM----GGTGKT-----PTALAIAKAVIDKNLKPGFLSRGYGRKSRIS--FRVDLEKHSAYDVGDEPLLLA 112 (338)
Q Consensus 44 ~pVI~VGNitv----GGtGKT-----P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~--~~v~~~~~~~~~vGDEp~lla 112 (338)
+|++.-|-=.+ =||||| |++..+. .+ + .-+...+| +++.+...-|.++-+|...+.
T Consensus 213 IPiaLsGrDvIgiAqTGSGKTLAFlLP~l~hi~----~q---~------~~~~~~gP~aLILaPTRELA~QI~~e~~~~~ 279 (602)
T PTZ00110 213 WPIALSGRDMIGIAETGSGKTLAFLLPAIVHIN----AQ---P------LLRPGDGPIVLVLAPTRELAEQIREQALQFG 279 (602)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH----HC---C------CCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 879856986799878978899999999999985----16---3------4367899769997383999999999999971
Q ss_pred HCCC----CCC-CCCHHHHHHHHCCCCCCEEEECCC-----CCCCCC-CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 0576----346-520122566410245747997183-----223441-23069999618433566553761365210025
Q gi|254780401|r 113 RRAV----TIV-TSDRKIGVQMLLQEGVDIIIMDDG-----FHSADL-QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 113 ~~~p----v~V-~~~R~~~~~~~~~~~~diiIlDDG-----fQh~~l-~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
+... .++ +.+...-+.. ++.++||||--=| ++...+ -+.+..+|+|-- +++|=.|-..+ +.+
T Consensus 280 ~~~~ir~~~i~GG~~~~~Q~~~-L~~G~dIvVATPGRLiDlL~~~~~~L~~v~yLVLDEA-----DRMLDmGFe~q-I~~ 352 (602)
T PTZ00110 280 RSSKLKNSVAYGGVPKRFQTYA-LRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEA-----DRMLDMGFEPQ-IRK 352 (602)
T ss_pred CCCCCEEEEEECCCCHHHHHHH-HCCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECH-----HHHHCCCCHHH-HHH
T ss_conf 5478549999799687999998-7169999997923899999649987431028998757-----76635462999-999
Q ss_pred HHHH----HHHHHHCCC-CHH---HHHHH-CCCCHH-------------------HHHH--HHC----CCCC-CCCCEEE
Q ss_conf 5665----145442044-124---57763-135011-------------------1222--201----3211-1686389
Q gi|254780401|r 182 QLSY----VDAILYVGN-KKN---VISSI-KNKSVY-------------------FAKL--KPR----LTFD-LSGKKVL 226 (338)
Q Consensus 182 ~l~r----ad~vi~~~~-~~~---~~~~~-~~~~i~-------------------~~~~--~~~----~~~~-l~~k~v~ 226 (338)
-++. -..++++-. +++ +...+ .+.|+. ...- +.. .+.. ..+.+++
T Consensus 353 Il~~i~pdRQTlLFSAT~p~~V~~LA~~~L~~~Pv~I~Vg~~~~~a~~~I~Q~v~vv~~~eK~~~L~~lL~~~~~~~kvI 432 (602)
T PTZ00110 353 IVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTTCHNIKQEVFVIEEHEKRAKLKELLGQIMDGGKIL 432 (602)
T ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99858978779999558998999999998206988999368887777870589999651889999999998527899689
Q ss_pred EEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECH
Q ss_conf 874-155357899988740100001221433234898999999997564798-799854
Q gi|254780401|r 227 AFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTA 283 (338)
Q Consensus 227 afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTE 283 (338)
+|| -...-+.+...|+..|+... .=|-.-+..+-+..++..++... .+|+|.
T Consensus 433 IFvnTK~~ad~L~~~L~~~G~~a~-----~LHGd~~Q~eR~~~L~~Fr~G~~~ILVATD 486 (602)
T PTZ00110 433 IFSETKKGADTLTKELRLDGWPAL-----CIHGDKKQEERTWVLNEFKTGKHPIMIATD 486 (602)
T ss_pred EEECCHHHHHHHHHHHHHCCCCEE-----EEECCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 992973899999999986799579-----820889999999999999769998898822
No 143
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=82.41 E-value=1.1 Score=25.47 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=25.9
Q ss_pred ECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCC
Q ss_conf 0788874899999999852-47315987604578
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVID-KNLKPGFLSRGYGR 86 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~-~g~~~~ilsRGYg~ 86 (338)
+-|||||-.+..|++.|++ .|+++... |==|+
T Consensus 10 iDGaGKTT~~~~l~~~l~~l~g~~~~~t-~EPg~ 42 (211)
T TIGR00041 10 IDGAGKTTQLNLLKKLLKELEGYKVLFT-REPGG 42 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCC
T ss_conf 1587589999999999775138347887-18999
No 144
>PRK08655 prephenate dehydrogenase; Provisional
Probab=82.39 E-value=1.7 Score=24.23 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=26.0
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 00788874899999999852473159876045
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.+||+|+ |-.|++++|+..||.|.|.+|.-
T Consensus 5 IIGG~G~--MG~~Fa~~f~~sGyeV~I~gRd~ 34 (441)
T PRK08655 5 IIGGTGG--LGKWFARFLKDKGYEVIVWGRDP 34 (441)
T ss_pred EEECCCH--HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9947981--77999999986798899981573
No 145
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=82.37 E-value=1.2 Score=25.20 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=25.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 07888748999999998524731598760457
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
.-|+|||-.+..|+++|.++|+++ +.+|-=+
T Consensus 4 iDGsGKsTq~~~L~~~L~~~g~~v-~~~~ep~ 34 (186)
T pfam02223 4 LDGAGKTTQAELLKERLKEQGIKV-VLTREPG 34 (186)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEE-EEEECCC
T ss_conf 999899999999999999879908-9974999
No 146
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.22 E-value=1.2 Score=25.14 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|+|||-++-.|.+.|+++|.++.+|
T Consensus 16 sGSGKTTiA~~l~~~L~~~g~~~~~L 41 (176)
T PRK05541 16 AGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99989999999999999759977998
No 147
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.17 E-value=1.7 Score=24.13 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576346520122566410245
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEG 134 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~~ 134 (338)
-|+|||-+...+.+++.+. ..-.||+ ...|+..... +--.|+.++---.=+..=..|.+.+++.+
T Consensus 134 TGSGKSTTlAamId~iN~~-~~~HIlT------IEDPIE~vh~--------skkslI~QREvG~dT~sF~~aLraALReD 198 (353)
T COG2805 134 TGSGKSTTLAAMIDYINKH-KAKHILT------IEDPIEYVHE--------SKKSLINQREVGRDTLSFANALRAALRED 198 (353)
T ss_pred CCCCHHHHHHHHHHHHHCC-CCCCEEE------ECCCHHHHHC--------CHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9996787999999998414-7751687------2374686504--------32766668774542788999999986029
Q ss_pred CCEEEEC
Q ss_conf 7479971
Q gi|254780401|r 135 VDIIIMD 141 (338)
Q Consensus 135 ~diiIlD 141 (338)
+|||++-
T Consensus 199 PDVIlvG 205 (353)
T COG2805 199 PDVILVG 205 (353)
T ss_pred CCEEEEE
T ss_conf 9979982
No 148
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=82.16 E-value=1.3 Score=24.89 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=22.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89982300078887489999999985247315987
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
++.+|. -|||||-++..++..+...+..+..+
T Consensus 5 ill~G~---~GsGKTtl~~~la~~~~~~~~~v~~~ 36 (148)
T smart00382 5 ILIVGP---PGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred EEEECC---CCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999---97029999999998726689968998
No 149
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=82.12 E-value=1.8 Score=24.06 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEC---CCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC-CCCHHHHHHHH
Q ss_conf 89999999985247315987604---578777755871456788770421233220576346-52012256641
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRG---YGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIV-TSDRKIGVQML 130 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRG---Yg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V-~~~R~~~~~~~ 130 (338)
|+..|+.+.+++.|.+=|.+-|| ||++.+ --+++.+.|+...||+| .-|.-+.++..
T Consensus 23 p~~~~iverlre~Gi~GATVlRGI~GfG~~~~-------------~h~~~if~Ls~~LPVviEvVD~eekI~~~ 83 (109)
T COG1993 23 PLYEAIVERLREEGIRGATVLRGIAGFGKDGK-------------IHGSKIFRLSTDLPVVVEVVDEEEKIERF 83 (109)
T ss_pred EHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-------------CCCCCHHHCCCCCCEEEEEECCHHHHHHH
T ss_conf 87999999999737573244431002587885-------------44350534247898799994879999999
No 150
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=81.96 E-value=2.7 Score=22.69 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=35.2
Q ss_pred HCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0464338898899823000788874899999999852473159876
Q gi|254780401|r 36 RGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 36 ~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+...-..-+||++| +|-.|||-+|..+|..|+..|+++|.-+
T Consensus 480 FP~~~~grIPiV~v----TGTNGKTt~~RL~Ahil~~~G~~vG~T~ 521 (876)
T TIGR02068 480 FPEEDDGRIPIVAV----TGTNGKTTTTRLVAHILKQTGKVVGMTT 521 (876)
T ss_pred CCCCCCCCEEEEEE----ECCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 88878983448887----2689835578899999985698276420
No 151
>PRK06761 hypothetical protein; Provisional
Probab=81.94 E-value=1.7 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78887489999999985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
=|+|||-++..|++.|..+|+.+...+.|
T Consensus 11 PGsGKSTta~~l~d~L~~~g~~v~~~~Eg 39 (281)
T PRK06761 11 PGFGKSTTAHLLNDKLSQLKIEVELFVEG 39 (281)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99980149999999998669853899507
No 152
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=81.92 E-value=1.4 Score=24.76 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 788874899999999852473159876045787
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
||-|||-++.=|+-.|.++|+||.++ |+-.|
T Consensus 9 GGIGKSTttaNl~aaLA~~G~kVl~I--gcDpk 39 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKRGKKVLQI--GCDPK 39 (267)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCC
T ss_conf 96578778999999999879959997--78995
No 153
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=81.86 E-value=1.4 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-|+|||-.+..|++.|.++|+++..+.
T Consensus 8 ~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 35 (200)
T cd01672 8 IDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899999999999999997799389986
No 154
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=81.83 E-value=1.4 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=23.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 078887489999999985247315987
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-||||||=+...+.++|+..+..+++.
T Consensus 2 ~AGTGKS~ll~~i~~~l~~~~~~v~vt 28 (418)
T pfam05970 2 YGGTGKTFLWNALSARIRSRGKIVLNV 28 (418)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 798879999999999997689889998
No 155
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.69 E-value=1.2 Score=25.12 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|+|||-++.+|+++|.++|+.+.+++
T Consensus 8 P~SGKSt~a~~L~~~l~~~~~~~i~~~ 34 (249)
T TIGR03574 8 PGVGKSTFSKELSKKLSEKNIDNIILG 34 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 999899999999999998299659965
No 156
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.64 E-value=1.5 Score=24.50 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=26.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 00788874899999999852473159876
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..||.||+.++.-||..+.+.|++|++|=
T Consensus 65 ~kgGvGKStva~nLA~alA~~G~rVlliD 93 (265)
T COG0489 65 GKGGVGKSTVAVNLAAALAQLGKRVLLLD 93 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 89987568999999999996399389996
No 157
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.38 E-value=4.2 Score=21.41 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=28.3
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3889889982300078887489999999985247315987
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
..+.|+|+| +|=.|||-++.+++..|+..|+++.+.
T Consensus 119 ~~~~~~IaV----TGTnGKTTTtsli~~iL~~~g~~~~~~ 154 (481)
T PRK01438 119 GTPAPWLAV----TGTNGKTTTVQMLASILRAAGLRAAAV 154 (481)
T ss_pred CCCCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 688878999----389974609999999999669970799
No 158
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=81.28 E-value=1.4 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
=|+|||-++..|.+.|+++|.++.+|
T Consensus 11 sGsGKTTlA~~l~~~L~~~~~~~~~L 36 (157)
T pfam01583 11 SGSGKSTIANALERKLFAQGISVYVL 36 (157)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999999759977997
No 159
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=80.80 E-value=1.1 Score=25.38 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=25.8
Q ss_pred EEECCCC-CCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888-748999999998524731598760457
Q gi|254780401|r 52 FVMGGTG-KTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtG-KTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|+.|||| -.==.+.+++.|+++|+.+..+.-.+|
T Consensus 6 i~~GGTGGHi~Palala~~L~~~g~ev~~ig~~~g 40 (359)
T PRK00726 6 LAGGGTGGHVFPALALAEELKKRGWEVLWLGTKRG 40 (359)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 99588689999999999999838798999978826
No 160
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=80.59 E-value=2.1 Score=23.53 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576----34652012256641
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML 130 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~ 130 (338)
=||||| ..|+.-.++...... ..+.-..+.+.+...-+.++-++...+.+... .+++......-...
T Consensus 45 TGSGKT--lay~lpil~~l~~~~-------~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~ 115 (203)
T cd00268 45 TGSGKT--AAFLIPILEKLDPSP-------KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK 115 (203)
T ss_pred CCCCCH--HHHHHHHHHHHHCCC-------CCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH
T ss_conf 997222--888869999986166-------76896699996879999999999998505798389998389887999999
Q ss_pred CCCCCCEEEECCC-----CCCCCC-CCEEEEEEEC
Q ss_conf 0245747997183-----223441-2306999961
Q gi|254780401|r 131 LQEGVDIIIMDDG-----FHSADL-QADFSLIVVN 159 (338)
Q Consensus 131 ~~~~~diiIlDDG-----fQh~~l-~rdl~Ivl~d 159 (338)
.+.++|++|.-=| ++...+ -.++..+++|
T Consensus 116 l~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlD 150 (203)
T cd00268 116 LKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred HHCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 85387599968189999998488651322489998
No 161
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=80.55 E-value=2.1 Score=23.46 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHH-CCCC------CCCCCHHHHH
Q ss_conf 888748999999998524731598760457877775587145678877042123-3220-5763------4652012256
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLAR-RAVT------IVTSDRKIGV 127 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~-~~pv------~V~~~R~~~~ 127 (338)
|+|||=+...-+=...+.||+++..- |..+-...| =++.. ++.. ...| .-++.|.+..
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMA---------PTEILA~QH-----~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l 358 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMA---------PTEILAEQH-----YESLRKWLEPLGIRVALLTGSLKGKARKEIL 358 (677)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEC---------CHHHHHHHH-----HHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf 77789999999999987288168866---------379999999-----9999987665197489864466506799999
Q ss_pred HHHCCCCCCEEEECCC-CCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 6410245747997183-2234412306999961843356655
Q gi|254780401|r 128 QMLLQEGVDIIIMDDG-FHSADLQADFSLIVVNSHRGLGNGL 168 (338)
Q Consensus 128 ~~~~~~~~diiIlDDG-fQh~~l~rdl~Ivl~d~~~~~gn~~ 168 (338)
..+.+-..|++|=--+ ||+---..++-+|++|-+..||=.+
T Consensus 359 ~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~Q 400 (677)
T COG1200 359 EQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQ 400 (677)
T ss_pred HHHHCCCCCEEEECCHHHHCCEEECCEEEEEEECCCCCCHHH
T ss_conf 987479989799722122045044202389972521022999
No 162
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=80.51 E-value=2.1 Score=23.58 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=34.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCC
Q ss_conf 98899823000788874899999999852473159876--0457877775
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS--RGYGRKSRIS 91 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils--RGYg~~~~~~ 91 (338)
-.+|.||=-=..|+|||-++..|++.|... ++++|| --|+.....+
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~~~~--~~~~I~~D~YYk~~~~~~ 53 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLP 53 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEECCCCCCCHHHCC
T ss_conf 766999986798778899999999982867--524765223202530166
No 163
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=80.45 E-value=0.99 Score=25.82 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
||+|||-++.-||..+ ++++++
T Consensus 9 GGVGKTT~a~nLA~~l----~~V~li 30 (179)
T cd03110 9 GGTGKTTVTAALAALL----KNVVLA 30 (179)
T ss_pred CCCHHHHHHHHHHHHC----CCCEEE
T ss_conf 9860999999999974----287199
No 164
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=79.84 E-value=1.9 Score=23.83 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=22.8
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-|+|||-+...++..+.+.+.++.|+.
T Consensus 26 pTGsGKT~~~~~~i~~~~~~~~~~lvlv 53 (103)
T pfam04851 26 ATGSGKTLTAAKLIARLLKGKKKVLFLV 53 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999879999999999984699299990
No 165
>KOG3877 consensus
Probab=79.75 E-value=1.9 Score=23.89 Aligned_cols=48 Identities=33% Similarity=0.454 Sum_probs=29.7
Q ss_pred CCCCCCCCEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEE-----EEEECCCCCCC
Q ss_conf 643388988998-23000788874899999999852473159-----87604578777
Q gi|254780401|r 38 QRLHAPIPVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPG-----FLSRGYGRKSR 89 (338)
Q Consensus 38 ~~~~~~~pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~-----ilsRGYg~~~~ 89 (338)
++..-.-.|||| ||| |||||-++-.||+.|-=. +=|+ |.---||+..+
T Consensus 65 krf~enSkvI~VeGnI---~sGK~klAKelAe~Lgf~-hfP~~~~d~iyvdsyg~D~r 118 (393)
T KOG3877 65 KRFHENSKVIVVEGNI---GSGKTKLAKELAEQLGFV-HFPEFRMDDIYVDSYGNDLR 118 (393)
T ss_pred HHHCCCCEEEEEECCC---CCCCHHHHHHHHHHHCCC-CCCCCCCCCEEECCCCCCCH
T ss_conf 3323365079985775---467016999999971972-15643455143035676440
No 166
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.73 E-value=1.6 Score=24.38 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=23.9
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-----HHHHHHHHHHHHCCCEEE
Q ss_conf 874155357899988740100001221433234898-----999999997564798799
Q gi|254780401|r 227 AFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSD-----KKIAYLLDQAQQKGLILV 280 (338)
Q Consensus 227 afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~-----~dl~~i~~~a~~~~~~ii 280 (338)
.|-=..+|+++-+. ++..+ +.+-..+--.|.. .++..-.....+++.+++
T Consensus 194 i~GLti~peRL~~I-R~eRL---~~~~~~~~s~Ya~~~~~~eEl~~ae~l~~r~~~pvi 248 (273)
T COG1806 194 LFGLTISPERLSAI-REERL---KSLGLRENSRYASLDQCREELAYAEALFRRNGIPVI 248 (273)
T ss_pred EEEEECCHHHHHHH-HHHHH---HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 78886389999999-99874---214788756412499999999999999998199778
No 167
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=79.73 E-value=1.7 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|+|||-+.-.|.+.|++.|.++.+|
T Consensus 8 sgsGKTTlA~~l~~~L~~~~~~~~~l 33 (149)
T cd02027 8 SGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999999869975997
No 168
>KOG0345 consensus
Probab=79.46 E-value=5.4 Score=20.58 Aligned_cols=215 Identities=15% Similarity=0.182 Sum_probs=103.3
Q ss_pred EECCCCCCH-HHHHHHHHHHH--CCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH-----CCCCCCCCCHH
Q ss_conf 007888748-99999999852--47315987604578777755871456788770421233220-----57634652012
Q gi|254780401|r 53 VMGGTGKTP-TALAIAKAVID--KNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR-----RAVTIVTSDRK 124 (338)
Q Consensus 53 tvGGtGKTP-~v~~l~~~l~~--~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~-----~~pv~V~~~R~ 124 (338)
.+-|||||= +++=+.+.+.+ ....++ -=+.+++.+...-+.++-.=...+.. .+..+||..-.
T Consensus 50 avTGSGKTlAFllP~le~i~rr~~~~~~~---------~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v 120 (567)
T KOG0345 50 AVTGSGKTLAFLLPMLEIIYRREAKTPPG---------QVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSV 120 (567)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCC---------CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 56788710668999999998611578965---------124799657199999999999999985036545999768647
Q ss_pred H-HHHHHCCCCCCEEEEC-----CCCCC----CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHH------HHHHH
Q ss_conf 2-5664102457479971-----83223----4412306999961843356655376136521002556------65145
Q gi|254780401|r 125 I-GVQMLLQEGVDIIIMD-----DGFHS----ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQL------SYVDA 188 (338)
Q Consensus 125 ~-~~~~~~~~~~diiIlD-----DGfQh----~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l------~rad~ 188 (338)
. -.....+.+++++|-- |=||| .+ .|.++|+++|-- ++||-.|-=+- +..-| .|.-+
T Consensus 121 ~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~-~rsLe~LVLDEA-----DrLldmgFe~~-~n~ILs~LPKQRRTGL 193 (567)
T KOG0345 121 EEDIKTFKEEGPNILVGTPGRLLDILQREAEKLS-FRSLEILVLDEA-----DRLLDMGFEAS-VNTILSFLPKQRRTGL 193 (567)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHCHHHCCC-CCCCCEEEECCH-----HHHHCCCHHHH-HHHHHHHCCCCCCCCC
T ss_conf 7799999970995899476249999845300036-133115775146-----76744327999-9999986621000244
Q ss_pred HHHCCCCH--HHHHH-----------HCC-------CCHHHHHHHH----CCC----CCCC-CCEEEEEECCCCHHHHHH
Q ss_conf 44204412--45776-----------313-------5011122220----132----1116-863898741553578999
Q gi|254780401|r 189 ILYVGNKK--NVISS-----------IKN-------KSVYFAKLKP----RLT----FDLS-GKKVLAFSGIADTEKFFT 239 (338)
Q Consensus 189 vi~~~~~~--~~~~~-----------~~~-------~~i~~~~~~~----~~~----~~l~-~k~v~afsGIa~P~~F~~ 239 (338)
+=-|.... ++... .+. ...++...++ ... ..-+ .|-++.|+.-|-.+-|..
T Consensus 194 FSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~ 273 (567)
T KOG0345 194 FSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGK 273 (567)
T ss_pred CEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHEEEEECHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH
T ss_conf 30021466889998535686365412344555842311125675778889999999962454627999347540999998
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECHHHH
Q ss_conf 88740100001221433234898999999997564-798799854663
Q gi|254780401|r 240 TVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQ-KGLILVTTAKDA 286 (338)
Q Consensus 240 ~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~-~~~~iiTTEKD~ 286 (338)
.+..+ ....-.|+=|-.-+.+.-++.++...+ .+..++||.=-|
T Consensus 274 ~~~~~---l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaA 318 (567)
T KOG0345 274 LFSRL---LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAA 318 (567)
T ss_pred HHHHH---HCCCCEEEECCHHCCHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 88876---0787479862201234688999998715686188604555
No 169
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=79.45 E-value=4.2 Score=21.37 Aligned_cols=225 Identities=14% Similarity=0.178 Sum_probs=104.7
Q ss_pred CCEEEECCEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC---
Q ss_conf 98899823000----78887489999999985247315987604578777755871456788770421233220576---
Q gi|254780401|r 44 IPVICVGGFVM----GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--- 116 (338)
Q Consensus 44 ~pVI~VGNitv----GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--- 116 (338)
+|.|.=|.=++ =|||||= .||.-.++..-..+.. ...+.+.. ..+++.+...-+.++.++...|.+...
T Consensus 115 IP~iL~GkDvi~~A~TGSGKTl--AyLLPil~~ll~~~~~-~~~~~~~p-~aLIL~PTRELa~QI~~~~~~L~~~~~l~v 190 (472)
T PRK01297 115 LGYTLAGHDAIGRAQTGTGKTA--AFLISIINQLLQTPPP-KERYMGEP-RALIIAPTRELVVQIAKDAAALTKYTGLNV 190 (472)
T ss_pred HHHHHCCCCEEEECCCCCHHHH--HHHHHHHHHHHHCCCC-HHCCCCCC-EEEEECCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9999769988998999867999--9999999999717751-01136895-299987999999999999999746279769
Q ss_pred -CCCCC-CHHHHHHHHCCCCCCEEEECCC-----CCCCCC-CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHH---
Q ss_conf -34652-0122566410245747997183-----223441-230699996184335665537613652100255665---
Q gi|254780401|r 117 -TIVTS-DRKIGVQMLLQEGVDIIIMDDG-----FHSADL-QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSY--- 185 (338)
Q Consensus 117 -v~V~~-~R~~~~~~~~~~~~diiIlDDG-----fQh~~l-~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~r--- 185 (338)
.++|. +..+-...+....+|+||.-=| ++...+ -.++.++++|--+ ++|-.|...+ +.+-++.
T Consensus 191 ~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEAD-----~LLd~gf~~~-v~~Il~~~p~ 264 (472)
T PRK01297 191 MTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-----RMLDMGFIPQ-VRQIIRQTPR 264 (472)
T ss_pred EEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECHH-----HHHCCCCHHH-HHHHHHHCCC
T ss_conf 999789887999999855899889979799998743482542552299998731-----2102575999-9999996898
Q ss_pred ---HHHHHHCCCC-HH---HHHHHCCCCH------------------HHHH--HHHCC----CCCCCCCEEEEEEC-CCC
Q ss_conf ---1454420441-24---5776313501------------------1122--22013----21116863898741-553
Q gi|254780401|r 186 ---VDAILYVGNK-KN---VISSIKNKSV------------------YFAK--LKPRL----TFDLSGKKVLAFSG-IAD 233 (338)
Q Consensus 186 ---ad~vi~~~~~-~~---~~~~~~~~~i------------------~~~~--~~~~~----~~~l~~k~v~afsG-Ia~ 233 (338)
...++++-.- .+ ........|+ +... -+... .......+++.||. ...
T Consensus 265 ~~~rQ~~lfSATl~~~v~~l~~~~~~~p~~v~i~~~~~~~~~v~q~~~~~~~~dk~~~L~~ll~~~~~~k~IIF~nt~~~ 344 (472)
T PRK01297 265 KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDE 344 (472)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCHHH
T ss_conf 55716999852577899999999779988999657766777602899981888999999999984798736896174999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECH
Q ss_conf 57899988740100001221433234898999999997564798-799854
Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTA 283 (338)
Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTE 283 (338)
-+.+...|.+.|+..... |-.-+..+=...++..++... .+|||.
T Consensus 345 ~~~l~~~L~~~g~~~~~l-----hg~l~q~~R~~~l~~F~~g~~~iLVaTD 390 (472)
T PRK01297 345 VRRIEERLVKDGINAAQL-----SGDVPQHKRIKTLEGFREGKIRVLVATD 390 (472)
T ss_pred HHHHHHHHHHCCCCEEEE-----ECCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 999998765449616864-----3778999999999999769996998866
No 170
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=79.39 E-value=3.6 Score=21.89 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=61.0
Q ss_pred CEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEE-CCCCCCCCCEEEECCCCCHHH--HCCHHHHHHHCCCCCCCCC----
Q ss_conf 3000788874899999999852-4731598760-457877775587145678877--0421233220576346520----
Q gi|254780401|r 51 GFVMGGTGKTPTALAIAKAVID-KNLKPGFLSR-GYGRKSRISFRVDLEKHSAYD--VGDEPLLLARRAVTIVTSD---- 122 (338)
Q Consensus 51 NitvGGtGKTP~v~~l~~~l~~-~g~~~~ilsR-GYg~~~~~~~~v~~~~~~~~~--vGDEp~lla~~~pv~V~~~---- 122 (338)
+-..|||| +=+++++.|-+ +|=++.+-|. |-|+.+.-.+.+........+ ..++.- + ....|.|..|
T Consensus 463 ~r~~~GTG---LGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl~~~~~~~~~~~~~~~~~-~-~~lrILvVEDn~iN 537 (779)
T PRK11091 463 GKPATGTG---IGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHAPAVAEEVEDAFDEDDMP-L-PALNILLVEDIELN 537 (779)
T ss_pred CCCCCCCC---HHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCC-C-CCCEEEEECCCHHH
T ss_conf 76778876---0799999999984997999955998717999997665566776655666668-8-88818998688999
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCC--CCEEEEEEECCCCCCCCCC
Q ss_conf 122566410245747997183223441--2306999961843356655
Q gi|254780401|r 123 RKIGVQMLLQEGVDIIIMDDGFHSADL--QADFSLIVVNSHRGLGNGL 168 (338)
Q Consensus 123 R~~~~~~~~~~~~diiIlDDGfQh~~l--~rdl~Ivl~d~~~~~gn~~ 168 (338)
|..+...+.+.|+++.+..||-|-... ..++|+|+.|-+-|--+|+
T Consensus 538 ~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDiqMP~MDG~ 585 (779)
T PRK11091 538 VIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGL 585 (779)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 999999999759999998999999998506999989982899999789
No 171
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.30 E-value=3.6 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=28.7
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88988998230007888748999999998524731598
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
.+.|+|+| +|-.|||-++..++..|++.|+++.+
T Consensus 107 ~~~~~IaV----TGTnGKTTTtsli~~iL~~~g~~~~~ 140 (448)
T PRK03803 107 AKAPIVAI----TGSNAKSTVTTLVGEMAKAAGKRVAV 140 (448)
T ss_pred CCCCEEEE----CCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 78988998----58998388999999999865983799
No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=79.12 E-value=2 Score=23.71 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=26.6
Q ss_pred ECCEEE-C--CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 823000-7--88874899999999852473159876
Q gi|254780401|r 49 VGGFVM-G--GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 49 VGNitv-G--GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..|+.. | |||||=++.+++..+.+.|++|.+++
T Consensus 105 ~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 882899899998799999999999998398499988
No 173
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=78.59 E-value=5.1 Score=20.79 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHH
Q ss_conf 99999740464338898899823000788874899999999852473159876045787777558714567887704212
Q gi|254780401|r 29 ISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEP 108 (338)
Q Consensus 29 ~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp 108 (338)
+..++..++.+. ...+||-| +|=.||..++.+|...|++.|++++.-+--|=-+...-++++... +.||-
T Consensus 35 i~~ll~~lg~p~-~~~~~IhV----aGTNGKGSt~~~l~~il~~~G~~vG~ftSPHl~~~~ERi~ing~~-----Is~~~ 104 (416)
T PRK10846 35 VSQVAARLDVLK-PAPFVFTV----AGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRVQGQE-----LPESA 104 (416)
T ss_pred HHHHHHHCCCCC-CCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEEECCCC-----CCHHH
T ss_conf 999999729986-57998999----688557999999999999879973077888679510156799912-----89899
Q ss_pred HHHH-HCC-----CCCCCCCH---HHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 3322-057-----63465201---225664102457479971832234
Q gi|254780401|r 109 LLLA-RRA-----VTIVTSDR---KIGVQMLLQEGVDIIIMDDGFHSA 147 (338)
Q Consensus 109 ~lla-~~~-----pv~V~~~R---~~~~~~~~~~~~diiIlDDGfQh~ 147 (338)
+.-+ ... ..-..--- ..|..+..+.++|+.|+.=|+=-|
T Consensus 105 ~~~~~~~v~~~~~~~~lT~FE~~T~~A~~~F~~~~vD~aVlEvGLGGr 152 (416)
T PRK10846 105 HTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR 152 (416)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEE
T ss_conf 999999988750688876999999999999985699989998357513
No 174
>COG4240 Predicted kinase [General function prediction only]
Probab=78.39 E-value=2.2 Score=23.32 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=30.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf 889982300078887489999999985247-31598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsR 82 (338)
|. .||=.---|||||-+.+.|...|.++| ++++-+|=
T Consensus 50 Pl-i~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSL 87 (300)
T COG4240 50 PL-IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSL 87 (300)
T ss_pred CE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 63-998526888765359999999999736530688664
No 175
>PRK03846 adenylylsulfate kinase; Provisional
Probab=78.08 E-value=2.1 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|+|||-+...|.+.|.+.|.++.+|
T Consensus 33 SGSGKTTlA~~L~~~L~~~~~~~~~L 58 (198)
T PRK03846 33 SGSGKSTVAGALEEALHELGVHTYLL 58 (198)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99988999999999999759975997
No 176
>KOG0735 consensus
Probab=78.04 E-value=2.3 Score=23.17 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCEEEECCEEE---CCCCCCHHHHHHHHHHHHC
Q ss_conf 98899823000---7888748999999998524
Q gi|254780401|r 44 IPVICVGGFVM---GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 44 ~pVI~VGNitv---GGtGKTP~v~~l~~~l~~~ 73 (338)
-||+.=|||.. -|+|||-++..+++++.+.
T Consensus 426 spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~ 458 (952)
T KOG0735 426 SPVFRHGNILLNGPKGSGKTNLVKALFDYYSKD 458 (952)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 543346618986799877769999999875156
No 177
>KOG1805 consensus
Probab=78.02 E-value=2.6 Score=22.91 Aligned_cols=28 Identities=36% Similarity=0.331 Sum_probs=26.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+-|||||.+.-.|++.|...|++|-+.|
T Consensus 693 MPGTGKTTtI~~LIkiL~~~gkkVLLts 720 (1100)
T KOG1805 693 MPGTGKTTTISLLIKILVALGKKVLLTS 720 (1100)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9989812259999999997388189985
No 178
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=77.85 E-value=2.9 Score=22.55 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=62.9
Q ss_pred EEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCEE--EECC--------CCC--HHH-H------CCHHH
Q ss_conf 00078-88748999999998524731598760457877--77558--7145--------678--877-0------42123
Q gi|254780401|r 52 FVMGG-TGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS--RISFR--VDLE--------KHS--AYD-V------GDEPL 109 (338)
Q Consensus 52 itvGG-tGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~--~~~~~--v~~~--------~~~--~~~-v------GDEp~ 109 (338)
+..|| || =+=..|++.|.+.|+.|.||||.=.... ..... .... .+. ..+ + =-||+
T Consensus 2 litGgnTG--fiG~~L~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~W~~l~~~DaviNLAG~~i 79 (307)
T TIGR01777 2 LITGGNTG--FIGRALTQRLTKSGHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESGWSALEGADAVINLAGEPI 79 (307)
T ss_pred EECCCCCC--HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCC
T ss_conf 64153302--3789999999847998999961686432000255445555221245207220566788627985568885
Q ss_pred HH-HHCC---CCCCCCCHHHHHHHHCC---C------CCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 32-2057---63465201225664102---4------574799718322344123069999618433566553
Q gi|254780401|r 110 LL-ARRA---VTIVTSDRKIGVQMLLQ---E------GVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLV 169 (338)
Q Consensus 110 ll-a~~~---pv~V~~~R~~~~~~~~~---~------~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~l 169 (338)
+- .+-. ...+-..|..+.+.|.+ . .|.+.|.==+-=+|.-.. -.++.-+...+.|.+++
T Consensus 80 ~~P~RWt~~~K~~i~~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~~-~~~~tE~~~~~~~ddFl 151 (307)
T TIGR01777 80 ADPKRWTEERKQEIRDSRIDTTRALVEAIAAAPRAEQKPKVFISASAVGYYGHSE-DRVFTEEDASGPGDDFL 151 (307)
T ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCC-CCEEECCCCCCCCCCCH
T ss_conf 7788878777575652334789999999984656678871688501666306899-82151166788877721
No 179
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=77.63 E-value=2.3 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|+|||-++-+|.+.|.++|+++-+|
T Consensus 32 SGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 32 SGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 88878799999999999759758985
No 180
>PRK09401 reverse gyrase; Reviewed
Probab=77.23 E-value=5.2 Score=20.72 Aligned_cols=96 Identities=22% Similarity=0.271 Sum_probs=61.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC--C--CC-----CCCCHHH
Q ss_conf 7888748999999998524731598760457877775587145678877042123322057--6--34-----6520122
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA--V--TI-----VTSDRKI 125 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~--p--v~-----V~~~R~~ 125 (338)
-|.|||-+-+..+-++..+|.++.+|- +...-+.++-+--..++.++ + ++ ..++.++
T Consensus 102 TG~GKTtfgl~~sly~a~kgkks~~i~--------------PT~~Lv~Q~~~kl~~~~~~~~~~~~~~~y~~~~~~~~ke 167 (1176)
T PRK09401 102 TGVGKTTFGLVMALYLAKKGKKSYIIF--------------PTRLLVEQVVEKLRKLAEKVGVKVRLLYYHSSLKKKEKE 167 (1176)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEE--------------CCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 998888999999999986598399996--------------888999999999999999709984089985677666789
Q ss_pred -HHHHHCCCCCCEEEECCCCCCCC---CCCE-EEEEEECCCCCC
Q ss_conf -56641024574799718322344---1230-699996184335
Q gi|254780401|r 126 -GVQMLLQEGVDIIIMDDGFHSAD---LQAD-FSLIVVNSHRGL 164 (338)
Q Consensus 126 -~~~~~~~~~~diiIlDDGfQh~~---l~rd-l~Ivl~d~~~~~ 164 (338)
..+.+.+-++|++|.--.|=++. |.++ ++++.+|-.+.+
T Consensus 168 e~~~~~~~gdfdIlitT~~fl~kn~~~l~~~~f~fifvDDVDs~ 211 (1176)
T PRK09401 168 EFLERLEEGDFDILVTTSQFLSKNFDELPKDRFDFVFVDDVDAV 211 (1176)
T ss_pred HHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEECHHHH
T ss_conf 99988655998689985676765487603568888999341877
No 181
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=77.17 E-value=6.3 Score=20.12 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=27.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.++|+| +|=-|||-++.+++..|+..|++|.++-
T Consensus 108 ~~~IaV----tGTnGKTTtT~ll~~il~~~g~~~~~~i 141 (459)
T PRK00421 108 RTSIAV----AGTHGKTTTTSLLAHVLAEAGLDPTFII 141 (459)
T ss_pred CCEEEE----ECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 964999----7788861189999999997699874885
No 182
>PRK00698 tmk thymidylate kinase; Validated
Probab=77.12 E-value=2.5 Score=23.01 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 078887489999999985247315987604
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.-|+|||-.+..|++.|.++|+++. ++|-
T Consensus 11 iDGsGKsTq~~~L~~~L~~~g~~v~-~t~e 39 (204)
T PRK00698 11 IDGAGKSTQIELLAERLEEQGRDVV-FTRE 39 (204)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEE-EEEC
T ss_conf 9999899999999999996799789-9869
No 183
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=77.05 E-value=2.5 Score=23.03 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=25.6
Q ss_pred ECCCCCCHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf 0788874899999999852-473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVID-KNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~-~g~~~~ils 81 (338)
=||-|||-++.=|+-.|.+ +|++|.++-
T Consensus 10 KGGIGKSTTt~NLaaALA~l~GkrVl~Ig 38 (275)
T PRK13233 10 KGGIGKSTTTQNTAAAMAHFHDKKVFIHG 38 (275)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 98544654599999999964798899979
No 184
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=76.35 E-value=6.6 Score=19.97 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=68.1
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCC--EEEEE-ECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-CCCCCCCC
Q ss_conf 998230007888748999999998524731--59876-045787777558714567887704212332205-76346520
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLK--PGFLS-RGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-AVTIVTSD 122 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~--~~ils-RGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-~pv~V~~~ 122 (338)
..||=-=.-|+|||-++..|++.|.+.+.. +++++ =||=- +-.+--.++ +++++ +|---+.+
T Consensus 35 ~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~-------------~~~~L~~~~-~~~rkGaP~TFD~~ 100 (230)
T PRK09270 35 TVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHL-------------DNAVLDARG-LRARKGAPETFDVA 100 (230)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-------------CHHHHHHCC-CCCCCCCCCCCCHH
T ss_conf 8999989998899999999999986237998579973653345-------------725554354-74337991021698
Q ss_pred HHHHHHHHCCCC-CCEE--E----ECCCCC-CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 122566410245-7479--9----718322-3441230699996184335665537613652100255665145442044
Q gi|254780401|r 123 RKIGVQMLLQEG-VDII--I----MDDGFH-SADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGN 194 (338)
Q Consensus 123 R~~~~~~~~~~~-~dii--I----lDDGfQ-h~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~ 194 (338)
.....-..++.+ .++. + ++|-.+ ...+..+-.||++. ||-.++..+|+++ +. .-.|..++...
T Consensus 101 ~l~~~L~~Lk~~~~~v~~P~yD~~~~d~~~~~~~i~~~~~IVIvE-----GnyLLld~~~W~~-l~---~~~D~~ifvd~ 171 (230)
T PRK09270 101 GLAELLRRLREGDCEVYWPVFDRQLEDPVADAIVVGPTARLVIVE-----GNYLLLDDEPWRR-LA---GFFDFSIFLDA 171 (230)
T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEE-----CEEEECCCCCHHH-HH---HHHCEEEEEEC
T ss_conf 899999998568971752134322457788953666998689993-----4476137832899-99---86376799848
Q ss_pred CHHHHH
Q ss_conf 124577
Q gi|254780401|r 195 KKNVIS 200 (338)
Q Consensus 195 ~~~~~~ 200 (338)
+.+...
T Consensus 172 ~~~~~~ 177 (230)
T PRK09270 172 PAEVLR 177 (230)
T ss_pred CHHHHH
T ss_conf 999999
No 185
>KOG1803 consensus
Probab=76.31 E-value=2.1 Score=23.48 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-++..|..++-++|.++.+..
T Consensus 210 PGTGKT~TlvEiI~qlvk~~k~VLVca 236 (649)
T KOG1803 210 PGTGKTRTLVEIISQLVKQKKRVLVCA 236 (649)
T ss_pred CCCCCEEEHHHHHHHHHHCCCEEEEEC
T ss_conf 988840439999999997288599976
No 186
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.22 E-value=4.5 Score=21.13 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=28.7
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.|+|+| +|=-|||-+|..++..|+..|+++.+.
T Consensus 108 ~~~~IaV----TGTnGKTTTt~ll~~iL~~~g~~~~~~ 141 (459)
T PRK02705 108 HIPWVGI----TGTNGKTTVTHLLAHILQAAGLNAPMC 141 (459)
T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 4975777----178972789999999999839985364
No 187
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=76.07 E-value=2.7 Score=22.74 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=27.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 0788874899999999852473159876045787
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
=||-|||-++.=|+-.|.++|+||..+ |+-.|
T Consensus 10 KGGIGKSTttaNlsaALA~~GkkV~~I--gcDPk 41 (269)
T PRK13185 10 KGGIGKSTTSSNLSAALAKLGKKVLQI--GCDPK 41 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCC
T ss_conf 995478889999999999769938998--18997
No 188
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=75.90 E-value=2.9 Score=22.49 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=28.5
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88988998230007888748999999998524731598
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
.+.|+|+| +|-.|||-+|..++..|++.|+++.+
T Consensus 108 ~~~p~vaI----TGTNGKTTTTsli~~~l~~~G~~~~l 141 (448)
T COG0771 108 GEAPIVAI----TGTNGKTTTTSLIAHLLKAAGLDALL 141 (448)
T ss_pred CCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 89998999----79996288999999999855998321
No 189
>KOG0331 consensus
Probab=75.83 E-value=6.8 Score=19.88 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=107.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEE--EECCCCCHHHHCCHHHHHHHCCC---C-CCCCCHHH
Q ss_conf 000788874899999999852473159876045787777558--71456788770421233220576---3-46520122
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFR--VDLEKHSAYDVGDEPLLLARRAV---T-IVTSDRKI 125 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~--v~~~~~~~~~vGDEp~lla~~~p---v-~V~~~R~~ 125 (338)
+.-=|||||= .|+.-.+...... .+|..+.++|.. +++...-|.++.+|..-+.+... + +.+..+..
T Consensus 134 iA~TGSGKTL--ay~lP~i~~l~~~-----~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~ 206 (519)
T KOG0331 134 IARTGSGKTL--AYLLPAIVHLNNE-----QGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKG 206 (519)
T ss_pred EECCCCCCHH--HHHHHHHHHHHHC-----CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 8235786205--5555799998700-----44434799986999768599999999999997077774079986898863
Q ss_pred HHHHHCCCCCCEEEECCC-----C--CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH-----HHHHHCC
Q ss_conf 566410245747997183-----2--234412306999961843356655376136521002556651-----4544204
Q gi|254780401|r 126 GVQMLLQEGVDIIIMDDG-----F--HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV-----DAILYVG 193 (338)
Q Consensus 126 ~~~~~~~~~~diiIlDDG-----f--Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra-----d~vi~~~ 193 (338)
.-..-++.++|++|--=| + ++..| +++..+++|-- +++|=.| .++.+.+-+.+. +.+..+-
T Consensus 207 ~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l-~~v~ylVLDEA-----DrMldmG-Fe~qI~~Il~~i~~~~rQtlm~sa 279 (519)
T KOG0331 207 PQLRDLERGVDVVIATPGRLIDLLEEGSLNL-SRVTYLVLDEA-----DRMLDMG-FEPQIRKILSQIPRPDRQTLMFSA 279 (519)
T ss_pred HHHHHHHCCCCEEEECCHHHHHHHHCCCCCC-CCEEEEEECCH-----HHHHCCC-CHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 7889875598189807717899997488564-53039996347-----7663135-379999998755897522788865
Q ss_pred -CCH---HHHHHHCCCCH--HHHHH--------------------H----HCCCC---CCCCCEEEEEEC-CCCHHHHHH
Q ss_conf -412---45776313501--11222--------------------2----01321---116863898741-553578999
Q gi|254780401|r 194 -NKK---NVISSIKNKSV--YFAKL--------------------K----PRLTF---DLSGKKVLAFSG-IADTEKFFT 239 (338)
Q Consensus 194 -~~~---~~~~~~~~~~i--~~~~~--------------------~----~~~~~---~l~~k~v~afsG-Ia~P~~F~~ 239 (338)
.+. .+...+.+.++ ..... + ...+. +-++.+++.||- .=+-+....
T Consensus 280 Twp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331 280 TWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred ECCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 46488999999984596489961214554433314651126878898879999999735689868999643364999998
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHHHH
Q ss_conf 88740100001221433234898999999997564798-799854663
Q gi|254780401|r 240 TVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAKDA 286 (338)
Q Consensus 240 ~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEKD~ 286 (338)
.|...++ -+-.=|-.-+..+=+..++...+.+. .+|.|.==+
T Consensus 360 ~l~~~~~-----~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331 360 NLRRKGW-----PAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHCCC-----CEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 8775176-----615500666488999999750268854698815312
No 190
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=75.72 E-value=1.8 Score=23.94 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 0078887489999999985247315
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
+--|.|||-+++-|.+.|.++|++|
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8888858999999999998668721
No 191
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=75.67 E-value=1.5 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|+|||-++..|++.|.+.|.++..++
T Consensus 8 SgSGKTT~a~~L~~~l~~~~~~~~~~~ 34 (196)
T pfam00485 8 SGAGKTTVARTFVSIFGREGVPAAGIE 34 (196)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 857199999999999660587764124
No 192
>PRK00889 adenylylsulfate kinase; Provisional
Probab=75.55 E-value=2.7 Score=22.80 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|+|||-++-.|.+.|.+.|.++.+|
T Consensus 13 sgSGKTTia~~l~~~L~~~~~~~~~L 38 (175)
T PRK00889 13 SGAGKTTISHALAEKLRARGYPVEVL 38 (175)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999999869967997
No 193
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=75.28 E-value=4.1 Score=21.45 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCCCCCHHHHHHHHHHHH-CCCCEEEEEE-CCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC----HHHHHH
Q ss_conf 788874899999999852-4731598760-4578777755871456788770421233220576346520----122566
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID-KNLKPGFLSR-GYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD----RKIGVQ 128 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~-~g~~~~ilsR-GYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~----R~~~~~ 128 (338)
|||| +=+.+++.|-+ +|=.+.+=|. |-|..+.-.+-+........+.-++|.-+. ...|.|..| |..+..
T Consensus 624 gGtG---LGLaI~k~LvelMGG~I~V~S~~G~GS~F~~~LPl~~~~~~~~~~~~~~~~~~-~lrVLvVEDn~~N~~v~~~ 699 (912)
T PRK11466 624 GGTG---LGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRHATAPVPKTVNQAVRLD-GLRLLLIEDNPLTQRITVE 699 (912)
T ss_pred CCCC---HHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC-CCEEEEEECCHHHHHHHHH
T ss_conf 9926---68999999999879979997169987289999977788878764334665778-8869999487889999999
Q ss_pred HHCCCCCCEEEECCCCCCCC-CC--CEEEEEEECCCCCCCCCC
Q ss_conf 41024574799718322344-12--306999961843356655
Q gi|254780401|r 129 MLLQEGVDIIIMDDGFHSAD-LQ--ADFSLIVVNSHRGLGNGL 168 (338)
Q Consensus 129 ~~~~~~~diiIlDDGfQh~~-l~--rdl~Ivl~d~~~~~gn~~ 168 (338)
.+.+.|+++.+.+||-|-.. +. +.+|+|+.|-+-|-.+|.
T Consensus 700 ~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~ 742 (912)
T PRK11466 700 MLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGI 742 (912)
T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHH
T ss_conf 9998699899989999999999718998589876999999899
No 194
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=74.97 E-value=3.3 Score=22.08 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCC
Q ss_conf 788874899999999852-47315987604578
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID-KNLKPGFLSRGYGR 86 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~-~g~~~~ilsRGYg~ 86 (338)
=|+|||-++.+|..++.. .|+.+++|+ |-.
T Consensus 8 PaAGKTTLar~L~~~l~~~~gw~v~vI~--YDd 38 (340)
T TIGR03575 8 PAAGKSTLARSLSATLRRERGWAVAVIT--YDD 38 (340)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE--HHH
T ss_conf 8787368999999998644476058986--212
No 195
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=74.88 E-value=6.1 Score=20.23 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=42.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-----CCCCCCCCHHHH
Q ss_conf 078887489999999985247--3159876045787777558714567887704212332205-----763465201225
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKN--LKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-----AVTIVTSDRKIG 126 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g--~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-----~pv~V~~~R~~~ 126 (338)
.-|+|||=.....+..+...+ .++.+++ +..+-..+.-++-.-.... ...+-+.++...
T Consensus 32 ~tGsGKT~~~~~~~~~~~~~~~~~~~li~~--------------P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (201)
T smart00487 32 PTGSGKTLAALLPALEALKRGKGKRVLVLV--------------PTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQ 97 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE--------------CCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHH
T ss_conf 999609999999999986338997599990--------------859999999988601021020445565247737999
Q ss_pred HHHHCCCCCCEEEEC-----CC-CCCCCCCCEEEEEEECCCCCC
Q ss_conf 664102457479971-----83-223441230699996184335
Q gi|254780401|r 127 VQMLLQEGVDIIIMD-----DG-FHSADLQADFSLIVVNSHRGL 164 (338)
Q Consensus 127 ~~~~~~~~~diiIlD-----DG-fQh~~l~rdl~Ivl~d~~~~~ 164 (338)
.....+..+++++.- +. .++.....+++++++|-.+-+
T Consensus 98 ~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~ 141 (201)
T smart00487 98 LRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRL 141 (201)
T ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHH
T ss_conf 99997599989995589999999727545254319999896775
No 196
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.25 E-value=5.7 Score=20.43 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 388988998230007888748999999998524731598
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
....|||+| +|=-|||-++.++...|+..|+++.+
T Consensus 111 ~~~~~iIaV----TGTnGKTTTtsli~~iL~~~g~~~~~ 145 (457)
T PRK01390 111 APDAPFIAI----TGTNGKSTTTALIAHLLRQAGRDVQM 145 (457)
T ss_pred CCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 578988999----28996498999999999973998699
No 197
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=74.21 E-value=6.6 Score=19.96 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-CCC-CCCCCHHHHH-HHHCC
Q ss_conf 88874899999999852473159876045787777558714567887704212332205-763-4652012256-64102
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-AVT-IVTSDRKIGV-QMLLQ 132 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-~pv-~V~~~R~~~~-~~~~~ 132 (338)
|-||+-+.+-++..+.+.|.++..+| ...++.++.--+--|.-. -.+ +.+....+.+ ..+.+
T Consensus 92 GIGKSTLLLQia~~la~~~~~vLYvS---------------GEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~~ 156 (372)
T cd01121 92 GIGKSTLLLQVAARLAKRGGKVLYVS---------------GEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE---------------CHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 88688999999999986399389982---------------456789999899985878877278843569999999997
Q ss_pred CCCCEEEEC
Q ss_conf 457479971
Q gi|254780401|r 133 EGVDIIIMD 141 (338)
Q Consensus 133 ~~~diiIlD 141 (338)
.+++++|.|
T Consensus 157 ~kP~~lIID 165 (372)
T cd01121 157 LKPDLVIID 165 (372)
T ss_pred HCCCEEEEE
T ss_conf 199889995
No 198
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=74.00 E-value=3.2 Score=22.23 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
--|.|||=++..|++.|+++|++++..-
T Consensus 8 ~T~vGKT~vt~~L~~~l~~~G~~v~~~K 35 (223)
T PRK00090 8 DTGVGKTVVTAALAQALREQGYRVAGYK 35 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9997699999999999997899489975
No 199
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=73.80 E-value=7.6 Score=19.53 Aligned_cols=117 Identities=15% Similarity=0.253 Sum_probs=60.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECC-----------------------------CCCHH
Q ss_conf 0007888748999999998524731598760457877775587145-----------------------------67887
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLE-----------------------------KHSAY 102 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~-----------------------------~~~~~ 102 (338)
.+.+||=-+=.++.+|+....+ .++.....+|-|.+-+..-+... ..+..
T Consensus 121 f~~sGSEAvE~AiklAr~~tgr-~~ii~~~~syHG~t~ga~s~t~~~~~~~~~~~p~~p~~~~~p~p~~~~~~~~~~~~~ 199 (442)
T PRK05769 121 FTNSGTESNEAAIKLARYYTGR-KYIIAFLGAFHGRTYGSMSLTASKPVQRRGFFPLMPGVIHVPYPNPYRNPFGYENPE 199 (442)
T ss_pred EECCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHH
T ss_conf 8186778999999998986599-869972486778863365320783011047789999927807897345655778989
Q ss_pred HHCCHHH------HHHHC-----------CCC------CCC-CCHHHHHHHHCCCCCCEEEECC------------CCCC
Q ss_conf 7042123------32205-----------763------465-2012256641024574799718------------3223
Q gi|254780401|r 103 DVGDEPL------LLARR-----------AVT------IVT-SDRKIGVQMLLQEGVDIIIMDD------------GFHS 146 (338)
Q Consensus 103 ~vGDEp~------lla~~-----------~pv------~V~-~~R~~~~~~~~~~~~diiIlDD------------GfQh 146 (338)
+++++.+ ++.+. -|+ ++- ++=.++++.+.+..-=++|.|. ++||
T Consensus 200 ~~~~~~~~~le~~i~~~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~l~~lc~~~gillI~DEV~tGfGRtG~~fa~e~ 279 (442)
T PRK05769 200 ELGNAVLDFIEDYLFKTLVPPEEVAAIFFEPIQGEGGYVVPPKNFFKELRKLADKYGILLIVDEVQTGFGRTGKMFAIEH 279 (442)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHC
T ss_conf 99999999999999873589897899999897778897068989998999999874935871110127775566213104
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 44123069999618433566553761365
Q gi|254780401|r 147 ADLQADFSLIVVNSHRGLGNGLVFPAGPL 175 (338)
Q Consensus 147 ~~l~rdl~Ivl~d~~~~~gn~~llPaGpL 175 (338)
+.+.+|+ +++ .+++||| +|.|-.
T Consensus 280 ~gv~PDi--v~~--gK~lggG--~Plsav 302 (442)
T PRK05769 280 FGVEPDI--ITL--AKAIAGG--LPLGAV 302 (442)
T ss_pred CCCCCCE--EEE--CCHHCCC--CCEEEE
T ss_conf 6778888--997--4010388--740899
No 200
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=73.58 E-value=2.1 Score=23.58 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=49.8
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC----CCC-EEEEEECCCCCCCCCEEEECCC-CCHHHHCCHHHHHHHC
Q ss_conf 388988998230007888748999999998524----731-5987604578777755871456-7887704212332205
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK----NLK-PGFLSRGYGRKSRISFRVDLEK-HSAYDVGDEPLLLARR 114 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~----g~~-~~ilsRGYg~~~~~~~~v~~~~-~~~~~vGDEp~lla~~ 114 (338)
..|--|+.-|.= |||||=++.++++.|++. +.. ++++. |.-.. ++.. .=..-|+++
T Consensus 41 ~~P~Ni~iYGkT---GtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~------------~NC~~~~T~y---~~~~~L~~~ 102 (383)
T TIGR02928 41 SRPSNIFIYGKT---GTGKTAVTKYVMKELEEAAEDRDVRDVSTVY------------INCQILDTSY---QVLVELANQ 102 (383)
T ss_pred CCCCCEEEECCC---CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE------------ECCCCCCCHH---HHHHHHHHH
T ss_conf 898725887888---9878899999999999986226997158999------------7785468469---999999998
Q ss_pred ---------CC-CCCCCCH-HHHHHHHCC-C--CCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf ---------76-3465201-225664102-4--574799718322344123069999
Q gi|254780401|r 115 ---------AV-TIVTSDR-KIGVQMLLQ-E--GVDIIIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 115 ---------~p-v~V~~~R-~~~~~~~~~-~--~~diiIlDDGfQh~~l~rdl~Ivl 157 (338)
.| .-++.++ ++-+...++ . +.=||||| .+|.+|
T Consensus 103 ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLD----------EiD~Lv 149 (383)
T TIGR02928 103 LNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLD----------EIDKLV 149 (383)
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC----------CCCHHH
T ss_conf 51577888898877878999999999983201887999862----------310221
No 201
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=73.53 E-value=7.8 Score=19.49 Aligned_cols=96 Identities=27% Similarity=0.378 Sum_probs=57.3
Q ss_pred EECCEEEC----CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC------CC
Q ss_conf 98230007----888748999999998524731598760457877775587145678877042123322057------63
Q gi|254780401|r 48 CVGGFVMG----GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA------VT 117 (338)
Q Consensus 48 ~VGNitvG----GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~------pv 117 (338)
.||-|+.| |.|+|-.-+...+.=.++|..-.|--|=||=+--++.++.+..+. +|-.++-..+ .-
T Consensus 133 lvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~-----aE~~~vv~~aDklVsfVD 207 (527)
T COG5258 133 LVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE-----AEKAAVVKRADKLVSFVD 207 (527)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCH-----HHHHHHHHHCCCEEEEEE
T ss_conf 987898457778884021134541677761653222699997249926760585207-----777676652030899985
Q ss_pred CCCCCHHH--HHHHHCCCCCCEEEE----CCCCCCCC
Q ss_conf 46520122--566410245747997----18322344
Q gi|254780401|r 118 IVTSDRKI--GVQMLLQEGVDIIIM----DDGFHSAD 148 (338)
Q Consensus 118 ~V~~~R~~--~~~~~~~~~~diiIl----DDGfQh~~ 148 (338)
.|+..|+. +++-+.-.++|..+| |||.|+..
T Consensus 208 tvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t 244 (527)
T COG5258 208 TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT 244 (527)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH
T ss_conf 3786278998888873266662799998167730330
No 202
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=73.38 E-value=3 Score=22.37 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-+++-++...+.+|.++..++
T Consensus 32 pG~GKTtl~lq~a~~~~~~g~~vlYid 58 (224)
T PRK09361 32 PGSGKTNICIQLAVEAARQGKKVIYID 58 (224)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 998599999999999997499099967
No 203
>PRK06921 hypothetical protein; Provisional
Probab=73.18 E-value=3.5 Score=21.91 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 8998230007888748999999998524-7315987
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFL 80 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~il 80 (338)
..-.|+. |||||=++.++|+.|.++ |..|...
T Consensus 119 l~f~G~~---G~GKThLa~aIa~~Ll~~~~~~Vly~ 151 (265)
T PRK06921 119 IALLGQP---GSGKTHLLTAAANELMRKKGVPVLYF 151 (265)
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7997289---89889999999999999629719998
No 204
>PRK05834 hypothetical protein; Provisional
Probab=73.12 E-value=6.3 Score=20.14 Aligned_cols=13 Identities=23% Similarity=0.242 Sum_probs=5.5
Q ss_pred EEECCCCCCCCCC
Q ss_conf 9971832234412
Q gi|254780401|r 138 IIMDDGFHSADLQ 150 (338)
Q Consensus 138 iIlDDGfQh~~l~ 150 (338)
|+=.|-|-..-+.
T Consensus 108 I~P~D~eG~~~lg 120 (197)
T PRK05834 108 ILPRDYFGYRSFG 120 (197)
T ss_pred CCCCCCCCCEECC
T ss_conf 6664667854516
No 205
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=72.97 E-value=8 Score=19.40 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=50.4
Q ss_pred CEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCC---CCCCEEEECCCC-CHHHHCCHHHHHH-----HCCCCC-C
Q ss_conf 3000788874899999999852-473159876045787---777558714567-8877042123322-----057634-6
Q gi|254780401|r 51 GFVMGGTGKTPTALAIAKAVID-KNLKPGFLSRGYGRK---SRISFRVDLEKH-SAYDVGDEPLLLA-----RRAVTI-V 119 (338)
Q Consensus 51 NitvGGtGKTP~v~~l~~~l~~-~g~~~~ilsRGYg~~---~~~~~~v~~~~~-~~~~vGDEp~lla-----~~~pv~-V 119 (338)
||.+-|.|-.=.+--+++.+.. ...-|.++.|+|.-- .+..+.+..+.+ +. .|.+-.+ +.+.++ |
T Consensus 1 ~Ivv~GmGGS~i~gd~l~~~~~~~~~vPv~v~rdy~lP~~v~~~~lvi~~S~SGnT----eEtl~~~~~a~~~ga~vi~i 76 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPAFVDRKTLVIAVSYSGNT----EETLSAVEQAKERGAKIVAI 76 (119)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCC----HHHHHHHHHHHHCCCEEEEE
T ss_conf 98999563888999999999705799887984899898755878789999289796----89999999999859909998
Q ss_pred CCCHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 52012256641024574799718322344
Q gi|254780401|r 120 TSDRKIGVQMLLQEGVDIIIMDDGFHSAD 148 (338)
Q Consensus 120 ~~~R~~~~~~~~~~~~diiIlDDGfQh~~ 148 (338)
+.. -+=.+.+.+++..++.+..|+|=|.
T Consensus 77 tsG-G~L~~~a~~~~~p~v~iP~g~~PR~ 104 (119)
T cd05017 77 TSG-GKLLEMAREHGVPVIIIPKGLQPRA 104 (119)
T ss_pred CCC-CHHHHHHHHCCCCEEECCCCCCCHH
T ss_conf 499-5599999887999898799999579
No 206
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=72.94 E-value=6.1 Score=20.21 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=29.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89889982300078887489999999985247315987604578
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+|-.+|.||+ ...||...+++.+.. -.+-|-|.|=++
T Consensus 4 kVLFVC~gN~-----cRSpmAE~l~~~~~~--~~~~v~SAGt~~ 40 (139)
T COG0394 4 KVLFVCTGNI-----CRSPMAEALLRHLAP--DNVEVDSAGTGG 40 (139)
T ss_pred EEEEEECCCC-----CCCHHHHHHHHHHCC--CCEEEECCCCCC
T ss_conf 6999949971-----216999999997553--786998786567
No 207
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=72.81 E-value=3 Score=22.44 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
--+.++-=++.=|+|||-+..-++..++.. +|.|+|.
T Consensus 32 ~g~~~lNfmsspGSGKT~LiEk~~~~~~~~-~K~Avi~ 68 (225)
T TIGR00073 32 EGLLVLNFMSSPGSGKTTLIEKLIERLDDE-VKIAVIE 68 (225)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCEEEEE
T ss_conf 597899802588611589999999984578-9789997
No 208
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=72.70 E-value=2.5 Score=23.01 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=36.8
Q ss_pred HCCHHHH---HH----HC-CCCCCCCCHHHHHHHHCCCCCCEEEECC------C------CCCCCCCCEEEEEEECC
Q ss_conf 0421233---22----05-7634652012256641024574799718------3------22344123069999618
Q gi|254780401|r 104 VGDEPLL---LA----RR-AVTIVTSDRKIGVQMLLQEGVDIIIMDD------G------FHSADLQADFSLIVVNS 160 (338)
Q Consensus 104 vGDEp~l---la----~~-~pv~V~~~R~~~~~~~~~~~~diiIlDD------G------fQh~~l~rdl~Ivl~d~ 160 (338)
|-||+.+ ++ +. .-|+.+.|=-+|...+.+..||+||||= | +.....-|++=|++..|
T Consensus 8 VEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPIIMLTA 84 (226)
T TIGR02154 8 VEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERLPDLILLDWMLPGTSGIELARRLRREPETRAIPIIMLTA 84 (226)
T ss_pred EECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 70826899999998416894699807979999998607998899614789975699998734763314888177405
No 209
>KOG0743 consensus
Probab=72.65 E-value=2.6 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=12.2
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 38987415535789998874
Q gi|254780401|r 224 KVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 224 ~v~afsGIa~P~~F~~~L~~ 243 (338)
.....-|=..|+.|..+.++
T Consensus 362 DmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743 362 DMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 25667266987999999998
No 210
>PRK13973 thymidylate kinase; Provisional
Probab=72.63 E-value=3.4 Score=22.03 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=26.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 0788874899999999852473159876045787
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.-|+|||-.+..|+++|.++|+++ +++|--|+.
T Consensus 11 iDGsGKsTq~~~L~~~L~~~g~~v-~~trePg~t 43 (216)
T PRK13973 11 GEGAGKSTQIRLLAERLRAAGYDV-LVTREPGGS 43 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCC
T ss_conf 999989999999999999779957-994098998
No 211
>CHL00194 ycf39 Ycf39; Provisional
Probab=72.42 E-value=4.9 Score=20.88 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=26.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+++||||.+ =..+++.|.++|+.|-.++|--
T Consensus 4 LV~GATG~l--Gr~vVr~Ll~~G~~Vr~lvRnp 34 (319)
T CHL00194 4 LVIGATGTL--GRQIVRRALDEGYQVKCLVRNL 34 (319)
T ss_pred EEECCCCHH--HHHHHHHHHHCCCCEEEEECCH
T ss_conf 998998589--9999999996889089995786
No 212
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=72.39 E-value=3.3 Score=22.12 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=22.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE-CC
Q ss_conf 07888748999999998524731598760-45
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR-GY 84 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR-GY 84 (338)
..|+|||-++..|++.|.. .++.++|= +|
T Consensus 7 ~sgsGKTT~a~~L~~~l~~--~~v~~i~~D~y 36 (198)
T cd02023 7 GSGSGKTTVAEEIIEQLGN--PKVVIISQDSY 36 (198)
T ss_pred CCCCCHHHHHHHHHHHHCC--CCEEEEECCCC
T ss_conf 9988599999999998099--98589978888
No 213
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=72.37 E-value=4.5 Score=21.19 Aligned_cols=14 Identities=50% Similarity=0.627 Sum_probs=9.7
Q ss_pred EEEECHHHHHHCCC
Q ss_conf 79985466343823
Q gi|254780401|r 278 ILVTTAKDAMRLHK 291 (338)
Q Consensus 278 ~iiTTEKD~VKL~~ 291 (338)
.+.||+-|.+||-+
T Consensus 342 t~M~~~~~~~~lAr 355 (359)
T TIGR01819 342 TLMTTLDDAARLAR 355 (359)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 64389889999999
No 214
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=72.30 E-value=3.7 Score=21.78 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE-------EECCCCCCCCCEEEECC------CCCHHHHCCHHHH--HHH------
Q ss_conf 78887489999999985247315987-------60457877775587145------6788770421233--220------
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL-------SRGYGRKSRISFRVDLE------KHSAYDVGDEPLL--LAR------ 113 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il-------sRGYg~~~~~~~~v~~~------~~~~~~vGDEp~l--la~------ 113 (338)
=|||||-+..-|.+.++++|-++.|. +|-|.... .+++.+- -+-|.||-|.|=. +|.
T Consensus 217 tG~GKs~~lr~LL~~iR~rGd~AIiYDkgC~f~~~fyd~~~--DviLNP~D~RCA~Wd~W~Ec~~~~dFen~A~~LIPm~ 294 (613)
T TIGR02759 217 TGSGKSVALRKLLRWIRQRGDRAIIYDKGCTFVSRFYDPSQ--DVILNPLDERCANWDVWRECKDKTDFENMAEALIPMH 294 (613)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC--CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 17438999999999998639858998257420213268888--7460674435554883503588988789999838898
Q ss_pred --C--CCCCCCCCHHH
Q ss_conf --5--76346520122
Q gi|254780401|r 114 --R--AVTIVTSDRKI 125 (338)
Q Consensus 114 --~--~pv~V~~~R~~ 125 (338)
. -|=||..-|.-
T Consensus 295 ~~~smDPFW~~SARti 310 (613)
T TIGR02759 295 GDGSMDPFWVDSARTI 310 (613)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 8888771224323678
No 215
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=72.30 E-value=8.3 Score=19.29 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=8.5
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 8987415535789998874
Q gi|254780401|r 225 VLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 225 v~afsGIa~P~~F~~~L~~ 243 (338)
|+.+--||.-+--...+..
T Consensus 221 ViIvDEIGt~~d~~A~~ta 239 (308)
T COG3854 221 VIIVDEIGTEEDALAILTA 239 (308)
T ss_pred EEEEECCCCHHHHHHHHHH
T ss_conf 7998343647779999999
No 216
>pfam01451 LMWPc Low molecular weight phosphotyrosine protein phosphatase.
Probab=72.26 E-value=4.5 Score=21.16 Aligned_cols=34 Identities=32% Similarity=0.566 Sum_probs=26.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98899823000788874899999999852473159876045
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|-.||.||+ .-.||+.++.+.+... ++.+-|.|=
T Consensus 3 ilfVC~gN~-----cRSpmAe~~~~~~~~~--~~~v~SAG~ 36 (140)
T pfam01451 3 VLFVCTGNI-----CRSPMAEAIFRALLPK--KAEVYSAGT 36 (140)
T ss_pred EEEECCCCH-----HHHHHHHHHHHHHCCC--CEEEEEEEC
T ss_conf 999929858-----5899999999986668--769987540
No 217
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=72.20 E-value=2.2 Score=23.32 Aligned_cols=60 Identities=25% Similarity=0.454 Sum_probs=41.5
Q ss_pred CCCEEEECCCCCCCC-C-----CCEEEEEEECCCCCCCCCC-CCCCHHHHHCCHHHHHHHHHHHHCC-CCH
Q ss_conf 574799718322344-1-----2306999961843356655-3761365210025566514544204-412
Q gi|254780401|r 134 GVDIIIMDDGFHSAD-L-----QADFSLIVVNSHRGLGNGL-VFPAGPLRVPLSRQLSYVDAILYVG-NKK 196 (338)
Q Consensus 134 ~~diiIlDDGfQh~~-l-----~rdl~Ivl~d~~~~~gn~~-llPaGpLREp~~~~l~rad~vi~~~-~~~ 196 (338)
.++ +..||||||.+ . +..+|++++|+..|.|-+. |+-.+-.. .+.++|+ -|-|++.. +..
T Consensus 131 rv~-~~i~DG~~fl~~~Gasdv~~~fDVIIvDstDPvGPa~~LF~~~Fy~-~~~~aL~-~~Gv~v~Qss~s 198 (284)
T TIGR00417 131 RVD-LAIDDGFKFLRDTGASDVEKKFDVIIVDSTDPVGPAETLFTKEFYE-LLKKALN-EDGVIVAQSSES 198 (284)
T ss_pred EEE-EEECCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHH-HHHHHCC-CCCEEEEECCCC
T ss_conf 035-8982517989761522221214479972778956554102179999-9998529-998899802788
No 218
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=72.03 E-value=2.3 Score=23.27 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEECCEEE--C--CCCCCHHHHHHHHHHHHC
Q ss_conf 899823000--7--888748999999998524
Q gi|254780401|r 46 VICVGGFVM--G--GTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitv--G--GtGKTP~v~~l~~~l~~~ 73 (338)
++--+|+++ | |||||-+|..|...+.+.
T Consensus 238 ~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~ 269 (753)
T TIGR01447 238 LALKSNFSLITGGPGTGKTTTVARLLLALIKQ 269 (753)
T ss_pred HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 98608768998798897789999999999998
No 219
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=72.01 E-value=8.4 Score=19.25 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 78887489999999985247
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g 74 (338)
.|||||-+++-++...+..+
T Consensus 28 ~gsGKT~l~lqla~~~q~~~ 47 (226)
T cd01393 28 FGSGKTQLCLQLAVEAQLPG 47 (226)
T ss_pred CCCCHHHHHHHHHHHHHCCC
T ss_conf 99989999999999985422
No 220
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=71.96 E-value=8.4 Score=19.24 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC------CCCCCCC------CCCEEEEEEECCC
Q ss_conf 763465201225664102457479971------8322344------1230699996184
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD------DGFHSAD------LQADFSLIVVNSH 161 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD------DGfQh~~------l~rdl~Ivl~d~~ 161 (338)
.-|..+.+-.+|.+.+.+..+|+|||| |||+-.+ ..++.-|+++.+.
T Consensus 27 ~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII~lta~ 85 (229)
T PRK10161 27 FQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTAR 85 (229)
T ss_pred CEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 99999899999999985289989999789988763358788775024689758999556
No 221
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=71.45 E-value=8.6 Score=19.16 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=17.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 078887489999999985247315987
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.=|+|||.+...+.+.+...+.++..+
T Consensus 88 ptGSGKtTtl~a~l~~~~~~~~~i~ti 114 (264)
T cd01129 88 PTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999977999999998643688508998
No 222
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.37 E-value=8.6 Score=19.15 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.|+|+| +|=.|||-++..+...|++.|+++.+.
T Consensus 111 ~~~~IaV----TGTnGKTTTt~ll~~iL~~~g~~~~~~ 144 (450)
T PRK02472 111 EAPIIGI----TGSNGKTTTTTLIAEMLNAGGQHGLLA 144 (450)
T ss_pred CCCEEEE----ECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 5978998----279997319999999999749973999
No 223
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=71.23 E-value=2.6 Score=22.86 Aligned_cols=143 Identities=20% Similarity=0.289 Sum_probs=85.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHH----------HH
Q ss_conf 38898899823000788874899999999852473159876045787777558714567887704212----------33
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEP----------LL 110 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp----------~l 110 (338)
|.|+.|| =|=| |+|||-++.-|.+- ..|.+.|||=-=.|. .-+|. +-=..||+|. .-
T Consensus 3 KiPvTvv-TGFL---GaGKTTLiRhlL~N--A~GkRiAvIVNEFGd-----~GiDG--~iLk~Cgi~~C~Eeeaq~~i~E 69 (349)
T TIGR02475 3 KIPVTVV-TGFL---GAGKTTLIRHLLEN--AEGKRIAVIVNEFGD-----LGIDG--EILKACGIEACSEEEAQVNIVE 69 (349)
T ss_pred CCCEEEE-ECCC---CCCHHHHHHHHHHC--CCCCEEEEEEECCCC-----CCCCH--HHHHHCCCCCCCCHHHCCCEEE
T ss_conf 3232787-3756---76158999999717--478769999852556-----06367--9996435678880120001488
Q ss_pred HHHCCCCC-CCCCHHHHHHHHCC--CCCCEEEE-----------CCCCCCCCCCCEEEE----EEECCC-----------
Q ss_conf 22057634-65201225664102--45747997-----------183223441230699----996184-----------
Q gi|254780401|r 111 LARRAVTI-VTSDRKIGVQMLLQ--EGVDIIIM-----------DDGFHSADLQADFSL----IVVNSH----------- 161 (338)
Q Consensus 111 la~~~pv~-V~~~R~~~~~~~~~--~~~diiIl-----------DDGfQh~~l~rdl~I----vl~d~~----------- 161 (338)
|++=|-=+ |..|=.-+...|+. ..+|-|+- =-+||=+.+.--+.+ -|+|+.
T Consensus 70 LaNGCiCCTVaDdF~Ptm~~LL~R~~~~DHIlIETSGLALPKPLV~AF~WP~iRs~vTVDGVvtVVDg~AvAAG~fA~D~ 149 (349)
T TIGR02475 70 LANGCICCTVADDFIPTMTKLLARRERPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADP 149 (349)
T ss_pred CCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCHHHHHHCCCCCCCCCEEECEEEEEECHHHHCCCCCCCCH
T ss_conf 08897310320125679999970388986688744210022158864688212271275417885444650358885437
Q ss_pred -----CCCCCCCCCCC-HHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf -----33566553761-365210025566514544204412
Q gi|254780401|r 162 -----RGLGNGLVFPA-GPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 162 -----~~~gn~~llPa-GpLREp~~~~l~rad~vi~~~~~~ 196 (338)
+.-+...|==- -||-|=+.-.|.-||+||+||.+.
T Consensus 150 dav~aQR~aD~nLDHed~PLeElFEDQlacADLviLnKaDl 190 (349)
T TIGR02475 150 DAVDAQRAADDNLDHEDSPLEELFEDQLACADLVILNKADL 190 (349)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999986087778888851233668999889998534300
No 224
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.19 E-value=8.7 Score=19.12 Aligned_cols=107 Identities=23% Similarity=0.353 Sum_probs=65.4
Q ss_pred HHHHHHH-CCCCEEEEEE--CCCCCCCCCEEEECCC------------C---CHHHHCCHHHH-HHHC--CCCC--CCCC
Q ss_conf 9999852-4731598760--4578777755871456------------7---88770421233-2205--7634--6520
Q gi|254780401|r 66 IAKAVID-KNLKPGFLSR--GYGRKSRISFRVDLEK------------H---SAYDVGDEPLL-LARR--AVTI--VTSD 122 (338)
Q Consensus 66 l~~~l~~-~g~~~~ilsR--GYg~~~~~~~~v~~~~------------~---~~~~vGDEp~l-la~~--~pv~--V~~~ 122 (338)
+-++++. +|++++.||. ||.+..+..+.|--++ | .+.++||++=- ...+ .||+ -+..
T Consensus 34 ~~~y~~~ikGKrvgLItn~agin~~~~ssldVl~~~~~c~l~aL~~pEHG~rG~~qage~vg~y~d~~tgipvySLyg~~ 113 (409)
T COG3876 34 EGEYTRCIKGKRVGLITNSAGINSEGKSSLDVLYEKEDCKLTALCTPEHGYRGAAQAGETVGNYPDRKTGIPVYSLYGVK 113 (409)
T ss_pred HHHHHHHHCCCEEEEEECCHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 58999874464688984522206566511445302786148997454435445543565567784324697179864046
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCC-----------------CCEEEEEEECCCCCCCCCCCCCCHHHHHC
Q ss_conf 122566410245747997183223441-----------------23069999618433566553761365210
Q gi|254780401|r 123 RKIGVQMLLQEGVDIIIMDDGFHSADL-----------------QADFSLIVVNSHRGLGNGLVFPAGPLRVP 178 (338)
Q Consensus 123 R~~~~~~~~~~~~diiIlDDGfQh~~l-----------------~rdl~Ivl~d~~~~~gn~~llPaGpLREp 178 (338)
|+-..+.+ .++||++.| -|+-.. .-|.++++.|--+|.|...+ -|||-||
T Consensus 114 ~~Pt~eml--e~~DV~vfD--iQDvG~R~Ytyiytm~yameAs~e~~k~fiVLDRPNP~gG~~V--eGplld~ 180 (409)
T COG3876 114 EKPTKEML--EDCDVFVFD--IQDVGVRSYTYIYTMAYAMEASAENGKEFIVLDRPNPMGGNIV--EGPLLDP 180 (409)
T ss_pred CCCCHHHH--HCCCEEEEE--CHHCCCEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCCC
T ss_conf 68977888--408889996--0003401006999999999999871993699678998888404--6778884
No 225
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=71.08 E-value=4.3 Score=21.32 Aligned_cols=15 Identities=13% Similarity=0.260 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 878999999999999
Q gi|254780401|r 314 NPDDLTNLVEMTVVS 328 (338)
Q Consensus 314 ~~~~l~~~l~~~i~~ 328 (338)
.++.+.+.+.+...+
T Consensus 187 GP~~Mmk~v~~~~~~ 201 (246)
T cd06218 187 GPEPMLKAVAELAAE 201 (246)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 999999999999997
No 226
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=71.05 E-value=3.4 Score=22.07 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 78887489999999985247315
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
=|||||-+|.++++.|++...++
T Consensus 64 pGTGKT~~vk~v~~~l~~~~~~~ 86 (394)
T PRK00411 64 PGTGKTTTVKKVFEELEEAALKV 86 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99989999999999999746896
No 227
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=70.87 E-value=6.8 Score=19.90 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=16.9
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHC
Q ss_conf 999961843356655376136521002556651454420
Q gi|254780401|r 154 SLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYV 192 (338)
Q Consensus 154 ~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~ 192 (338)
-|++-|-++..|+ ..+|..- -.+.+.+..|++.
T Consensus 206 ~i~vE~ESr~IG~-~~iP~~l-----~~~M~~a~~i~i~ 238 (333)
T PRK11784 206 PIVVEDESRRIGR-VHLPEAL-----YEAMQAAPIVEVE 238 (333)
T ss_pred CEEEEECCCCCCC-CCCCHHH-----HHHHHHCCEEEEE
T ss_conf 5699601003067-1389999-----9999629889998
No 228
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=70.62 E-value=4.4 Score=21.21 Aligned_cols=34 Identities=29% Similarity=0.215 Sum_probs=27.5
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-+...|+- |||||.+++-.+....+.|.++..+|
T Consensus 25 ~~lI~G~p---GsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 25 VVLITGPP---GTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred EEEEEECC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 89999389---98689999999997762698589999
No 229
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=70.58 E-value=1.9 Score=23.81 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=45.8
Q ss_pred EEEECCCCCCCCCCC-EEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf 799718322344123-069999618433566553761365210025566514544204412
Q gi|254780401|r 137 IIIMDDGFHSADLQA-DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 137 iiIlDDGfQh~~l~r-dl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
=|+.|||+|.-+-.. .+|++++|+..|.|-+.-|.....-+...++|+- |-|+++.+..
T Consensus 133 ~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~-~Gi~v~q~~~ 192 (282)
T COG0421 133 EIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKE-DGIFVAQAGS 192 (282)
T ss_pred EEEECCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC-CCEEEEECCC
T ss_conf 89961079998748876778998588998843023779999999986288-9689994478
No 230
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=70.33 E-value=4.5 Score=21.14 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 788874899999999852473159876045787
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
||-|||-++.-++-.|.++|+||..+ |+-.|
T Consensus 9 GGIGKSTtsaNlsaaLA~~GkkVl~I--GcDpk 39 (271)
T CHL00072 9 GGIGKSTTSCNISIALARRGKKVLQI--GCDPK 39 (271)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCH
T ss_conf 85448588999999999879979997--89973
No 231
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=70.31 E-value=9.1 Score=18.99 Aligned_cols=117 Identities=22% Similarity=0.302 Sum_probs=58.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECC-------------------CC----CHHHHCCHH
Q ss_conf 0007888748999999998524731598760457877775587145-------------------67----887704212
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLE-------------------KH----SAYDVGDEP 108 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~-------------------~~----~~~~vGDEp 108 (338)
.+.+||=-+=.++.+|+....+ .++.....||-|.+-+..-+... .+ ......|..
T Consensus 101 f~~sGsEA~e~AiklAr~~t~r-~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~ 179 (413)
T cd00610 101 FVNSGTEAVEAALKLARAYTGR-KKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLE 179 (413)
T ss_pred EECCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 8187779999999999997399-889998688478766334413783224577888899668089876555432277899
Q ss_pred H---HHHHC---------CC------CCC-CCCHHHHHHHHCCCCCCEEEECC------------CCCCCCCCCEEEEEE
Q ss_conf 3---32205---------76------346-52012256641024574799718------------322344123069999
Q gi|254780401|r 109 L---LLARR---------AV------TIV-TSDRKIGVQMLLQEGVDIIIMDD------------GFHSADLQADFSLIV 157 (338)
Q Consensus 109 ~---lla~~---------~p------v~V-~~~R~~~~~~~~~~~~diiIlDD------------GfQh~~l~rdl~Ivl 157 (338)
. ++..+ -| +++ .++=.++++.+.+..-=++|+|. ++||+.+.+|+ ++
T Consensus 180 ~l~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDi--vt 257 (413)
T cd00610 180 ALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI--VT 257 (413)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHEEECCCEEEEEECEECCCCCCCCCHHHHCCCCCCE--EE
T ss_conf 9999997389978999997987889987388899788863286058069852020077754543123325817875--65
Q ss_pred ECCCCCCCCCCCCCCHHH
Q ss_conf 618433566553761365
Q gi|254780401|r 158 VNSHRGLGNGLVFPAGPL 175 (338)
Q Consensus 158 ~d~~~~~gn~~llPaGpL 175 (338)
+ .+++||| +|.|-.
T Consensus 258 ~--gK~lggG--~Pisav 271 (413)
T cd00610 258 L--GKGLGGG--LPLGAV 271 (413)
T ss_pred E--CCCCCCC--CCCEEE
T ss_conf 2--3345688--986047
No 232
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=70.30 E-value=4.3 Score=21.28 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.4
Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 07888748999999998524-73159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK-NLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~-g~~~~ils 81 (338)
-||.|||-++.-||-.|.+. |.+++++-
T Consensus 8 kGGvG~Tt~A~nlA~~la~~~~~~v~lvD 36 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVD 36 (106)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99866899999999999984199389996
No 233
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=70.20 E-value=4.4 Score=21.21 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=13.4
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHC
Q ss_conf 44123069999618433566553761365210
Q gi|254780401|r 147 ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVP 178 (338)
Q Consensus 147 ~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp 178 (338)
.+.+-|+++++.|=.-|+-.|+-+ ---|||+
T Consensus 37 lA~~~~Y~liILDvmLPG~DGW~v-l~~LR~~ 67 (219)
T TIGR01387 37 LAEKDDYDLIILDVMLPGMDGWQV-LKALRRS 67 (219)
T ss_pred HCCCCCCEEEEEECCCCCCCHHHH-HHHHHCC
T ss_conf 436888308996325889506899-9998407
No 234
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=70.02 E-value=4.4 Score=21.23 Aligned_cols=120 Identities=17% Similarity=0.261 Sum_probs=72.2
Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--------------
Q ss_conf 982300078887489999999985247315987604578777755871456788770421233220--------------
Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR-------------- 113 (338)
Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~-------------- 113 (338)
-||=.--=|+|||-+...|++.+.+. |+.++++.--- .--|--+|...
T Consensus 3 ~iG~~GPvG~Gktal~e~l~~~~~~~-y~~av~tndiy-----------------t~eda~fl~~~~~l~~~ri~GvetG 64 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRELAKK-YDLAVITNDIY-----------------TQEDAEFLVKNSVLPPERILGVETG 64 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEECCHH-----------------HHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 66650477764689999999988740-66778731100-----------------1246888876412662226774158
Q ss_pred CCC-CCCCCCHHH---HHHHHCC--CCCCEEEECCCCCC------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 576-346520122---5664102--45747997183223------44123069999618433566553761365210025
Q gi|254780401|r 114 RAV-TIVTSDRKI---GVQMLLQ--EGVDIIIMDDGFHS------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 114 ~~p-v~V~~~R~~---~~~~~~~--~~~diiIlDDGfQh------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
-|| +.+-+|-.- |+..+.. ...+++++.-|=.+ +.|. |+.|-++|-.. |.-+|. ..=+
T Consensus 65 GCPhtairedas~nl~a~~~~~~rf~~~~~~~~esGGdnl~atf~P~l~-d~t~~vidva~----G~kiPr----kGGP- 134 (199)
T TIGR00101 65 GCPHTAIREDASLNLEAVEELEARFPDLELVFIESGGDNLSATFSPELA-DLTIFVIDVAE----GDKIPR----KGGP- 134 (199)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCEE-EEEEEEEEECC----CCCCCC----CCCC-
T ss_conf 9873001000212188999886215640489983288620000276402-36788997205----874567----7889-
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 56651454420441
Q gi|254780401|r 182 QLSYVDAILYVGNK 195 (338)
Q Consensus 182 ~l~rad~vi~~~~~ 195 (338)
++.|+|++++++-+
T Consensus 135 Git~sdllvink~d 148 (199)
T TIGR00101 135 GITRSDLLVINKID 148 (199)
T ss_pred CCCCHHEEEEECCC
T ss_conf 85300122432001
No 235
>KOG4658 consensus
Probab=69.87 E-value=8.9 Score=19.06 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=48.1
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEE-ECCCCCHHHHCCHHHHHHHC-CCCCCCCC--
Q ss_conf 998230007888748999999998524731598760457877775587-14567887704212332205-76346520--
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRV-DLEKHSAYDVGDEPLLLARR-AVTIVTSD-- 122 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v-~~~~~~~~~vGDEp~lla~~-~pv~V~~~-- 122 (338)
-.||..=+||-|||-++.-+-+.+.+ +.+++.+. .+| ++..-+..++=+.=+.-... .+-+-.+.
T Consensus 180 ~ivgi~GMGGvGKTTL~~qi~N~~~~-------v~~~Fd~~----iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~ 248 (889)
T KOG4658 180 GIVGIYGMGGVGKTTLARQIFNKFDE-------VGNHFDGV----IWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEED 248 (889)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCHH-------HCCCCCEE----EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 68999889703499999998413312-------23578749----99997763108889999999844687100010288
Q ss_pred -HHHHHHHHCCCCCCEEEECCCCCCCC--------C--CCEEEEEEECCCC
Q ss_conf -12256641024574799718322344--------1--2306999961843
Q gi|254780401|r 123 -RKIGVQMLLQEGVDIIIMDDGFHSAD--------L--QADFSLIVVNSHR 162 (338)
Q Consensus 123 -R~~~~~~~~~~~~diiIlDDGfQh~~--------l--~rdl~Ivl~d~~~ 162 (338)
...-+..+.+..--+++|||=-+--. . ...-.++++....
T Consensus 249 ~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~ 299 (889)
T KOG4658 249 ELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSE 299 (889)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEECCH
T ss_conf 999999998556855999825675012877189998756872899996458
No 236
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=69.80 E-value=9.3 Score=18.92 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=39.7
Q ss_pred HHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 997404643388988998230007888748999999998524731598760457877775587
Q gi|254780401|r 32 KLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRV 94 (338)
Q Consensus 32 ~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v 94 (338)
++..++.+. ...|||-| +|=.||..++.+|...|.+.||+++.-+--|=-+...-+++
T Consensus 33 ll~~LGnP~-~~~~vIhV----aGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~i 90 (427)
T COG0285 33 LLERLGNPQ-KSPPVIHV----AGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRI 90 (427)
T ss_pred HHHHCCCCC-CCCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEE
T ss_conf 999739972-14986999----37898424999999999975987146788760764217999
No 237
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=69.78 E-value=4.7 Score=21.01 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=12.8
Q ss_pred ECCCCCCHHHHHHHHHHH
Q ss_conf 078887489999999985
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~ 71 (338)
-=|+|||-+.-.|+.++.
T Consensus 43 pnGaGKSTLl~~l~Gl~~ 60 (194)
T cd03213 43 PSGAGKSTLLNALAGRRT 60 (194)
T ss_pred CCCCHHHHHHHHHHCCCC
T ss_conf 999519999999857777
No 238
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=69.76 E-value=4.8 Score=20.94 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-++..++-...+.|.++..+|
T Consensus 8 pGsGKT~~a~qfl~~~a~~ge~~lyis 34 (187)
T cd01124 8 PGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999999999987699789999
No 239
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=69.65 E-value=3 Score=22.44 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCH-HHHHHHCCCCCCCCCHHHHHHHHCCCC-
Q ss_conf 887489999999985247315987604578777755871456788770421-233220576346520122566410245-
Q gi|254780401|r 57 TGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDE-PLLLARRAVTIVTSDRKIGVQMLLQEG- 134 (338)
Q Consensus 57 tGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDE-p~lla~~~pv~V~~~R~~~~~~~~~~~- 134 (338)
||||-+|..||+.|... -+-=||+.... ..-.||| .|.+....-++.|.-++. .++.+..
T Consensus 186 tGKstLv~~lA~~~nt~------~~~Eyar~y~e----------~~~ggDe~~L~~~dY~~~~~G~~~~~--~~~v~~a~ 247 (346)
T TIGR01526 186 TGKSTLVNKLAEKLNTT------SAWEYAREYVE----------AKLGGDEIALQYSDYARIVLGQIDYI--DAAVRDAD 247 (346)
T ss_pred CCHHHHHHHHHHHHCCC------CCHHHHHHHHH----------HHCCCCHHHHHCCCHHHHHHHHHHHH--HHHHCCCC
T ss_conf 63689999999984688------71256556666----------51687214542034378764246677--78630732
Q ss_pred -CCEEEEC
Q ss_conf -7479971
Q gi|254780401|r 135 -VDIIIMD 141 (338)
Q Consensus 135 -~diiIlD 141 (338)
--|+++|
T Consensus 248 nq~v~f~D 255 (346)
T TIGR01526 248 NQKVAFID 255 (346)
T ss_pred CCEEEEEE
T ss_conf 37478984
No 240
>PRK00784 cobyric acid synthase; Provisional
Probab=69.63 E-value=2.9 Score=22.52 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=11.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 788874899999999852473159
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
-+.|||-+|..||+.|+++|++|+
T Consensus 13 S~vGKS~l~aaLCRi~~~~G~~Va 36 (492)
T PRK00784 13 SDAGKSTLVAGLCRILARRGLRVA 36 (492)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 887799999999999995898557
No 241
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=69.60 E-value=3.8 Score=21.71 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=24.6
Q ss_pred CCEEEC--CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 230007--8887489999999985247315987
Q gi|254780401|r 50 GGFVMG--GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 50 GNitvG--GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|=|.+| |+|||-|+.+||+++.++|+-|-..
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 469956999974689999999998669688632
No 242
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=69.56 E-value=6.9 Score=19.83 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 388988998230007888748999999998524731598
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
.++.+||.| +|-.|||.+..+++..|.+.|...+.
T Consensus 97 ~~~~~vIgI----TGSnGKTTtk~~i~~iL~~~g~~~~t 131 (452)
T PRK10773 97 QVPARVVAL----TGSSGKTSVKEMTAAILSQCGNTLYT 131 (452)
T ss_pred CCCCCEEEE----EECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 599758999----91699625999999999972884124
No 243
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.41 E-value=9 Score=19.04 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=27.3
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.|+|. ++|=-|||-++.+++..|+..|+++.+.
T Consensus 116 ~~~~Ia----VTGTnGKTTTtsmi~~iL~~~g~~~~~g 149 (458)
T PRK01710 116 PAKVFG----ITGSDGKTTTTTLIYEMLKEEGYKTWVG 149 (458)
T ss_pred CCCEEE----EECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 587799----9368984789999999999849975851
No 244
>KOG1159 consensus
Probab=69.36 E-value=9.5 Score=18.86 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=11.6
Q ss_pred CCEEEEE---ECCCCHHHHHHHH
Q ss_conf 8638987---4155357899988
Q gi|254780401|r 222 GKKVLAF---SGIADTEKFFTTV 241 (338)
Q Consensus 222 ~k~v~af---sGIa~P~~F~~~L 241 (338)
+++++.+ +|||-+..+++.=
T Consensus 432 ~~PlImVGPGTGvAPfRa~i~er 454 (574)
T KOG1159 432 NKPLIMVGPGTGVAPFRALIQER 454 (574)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH
T ss_conf 88769975898753179999998
No 245
>pfam09001 DUF1890 Domain of unknown function (DUF1890). This domain is found in a set of hypothetical archaeal proteins.
Probab=69.16 E-value=4.5 Score=21.19 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 748999999998524731598760
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.||.++||+..|+++|+.+.|.+-
T Consensus 12 q~p~~lYl~~~Lk~~G~~v~Va~n 35 (138)
T pfam09001 12 QIPSALYLSNKLKDKGFRVVVAAN 35 (138)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 227999999998766960699669
No 246
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=69.15 E-value=3.4 Score=22.01 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=39.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC------CCCCCCCEEEECCCCC-H---HHHCCHHHHHHHCC
Q ss_conf 899823000788874899999999852473159876045------7877775587145678-8---77042123322057
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY------GRKSRISFRVDLEKHS-A---YDVGDEPLLLARRA 115 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY------g~~~~~~~~v~~~~~~-~---~~vGDEp~lla~~~ 115 (338)
|.-=|-+ |+|||-+|.-+++-| |++--|-|=-| .-...--++.|--.++ . +..|=|-++....+
T Consensus 31 ~~L~GDl---GaGKTtl~~G~~~~L---G~~~~~~SPTftlv~~Y~~~~~~~YH~DlYR~~~~~E~E~~g~~~y~~~~Df 104 (147)
T TIGR00150 31 VLLKGDL---GAGKTTLVKGLLQGL---GITGNVTSPTFTLVNEYNEGNLPLYHFDLYRLADPEELELLGLEEYFEGDDF 104 (147)
T ss_pred EEEECCC---CCCHHHHHHHHHHHC---CCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9973234---666589999999837---9226885793210100113785153333420577234454124888446998
Q ss_pred CCC
Q ss_conf 634
Q gi|254780401|r 116 VTI 118 (338)
Q Consensus 116 pv~ 118 (338)
|.-
T Consensus 105 Plg 107 (147)
T TIGR00150 105 PLG 107 (147)
T ss_pred CEE
T ss_conf 568
No 247
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=69.07 E-value=6.4 Score=20.06 Aligned_cols=218 Identities=15% Similarity=0.169 Sum_probs=104.8
Q ss_pred CCEEEECCEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC---
Q ss_conf 98899823000----78887489999999985247315987604578777755871456788770421233220576---
Q gi|254780401|r 44 IPVICVGGFVM----GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--- 116 (338)
Q Consensus 44 ~pVI~VGNitv----GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--- 116 (338)
+|.+.-|.=++ =|||||= .|+.-.|+... +. .+....+++++...-+.++-++-..++++.+
T Consensus 37 IP~iL~GkDvi~~AqTGSGKTl--AFlLPiL~~l~--~~-------~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~ 105 (629)
T PRK11634 37 IPHLLNGRDVLGMAQTGSGKTA--AFSLPLLHNLD--PE-------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 (629)
T ss_pred HHHHHCCCCEEEECCCCCHHHH--HHHHHHHHHHH--HC-------CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 9999679988997888478999--99999999866--23-------6898689978998999999999999972179977
Q ss_pred --CCCCCCHHHHHHHHCCCCCCEEEECCC--CCCC-----CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHH--
Q ss_conf --346520122566410245747997183--2234-----41230699996184335665537613652100255665--
Q gi|254780401|r 117 --TIVTSDRKIGVQMLLQEGVDIIIMDDG--FHSA-----DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSY-- 185 (338)
Q Consensus 117 --v~V~~~R~~~~~~~~~~~~diiIlDDG--fQh~-----~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~r-- 185 (338)
.+++......-...++.++||||--=| ++|. .| .++..+|+|-- +.+|=.|-.. .+..-++.
T Consensus 106 v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L-~~l~~lVLDEA-----D~mL~~gF~~-di~~Il~~lp 178 (629)
T PRK11634 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDL-SKLSGLVLDEA-----DEMLRMGFIE-DVETIMAQIP 178 (629)
T ss_pred EEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCH-HHCCEEEEECH-----HHHCCCCCHH-HHHHHHHHCC
T ss_conf 999989977899999862799999969899999997296412-00767898671-----5533636599-9999998674
Q ss_pred --HHHHHHCCC-CHH---HHHHHCCCCH----------------HHHHH----HHC----CCCCCCCCEEEEEE-CCCCH
Q ss_conf --145442044-124---5776313501----------------11222----201----32111686389874-15535
Q gi|254780401|r 186 --VDAILYVGN-KKN---VISSIKNKSV----------------YFAKL----KPR----LTFDLSGKKVLAFS-GIADT 234 (338)
Q Consensus 186 --ad~vi~~~~-~~~---~~~~~~~~~i----------------~~~~~----~~~----~~~~l~~k~v~afs-GIa~P 234 (338)
...++++-. +.. +...+...|. .+... +.. .+......+.+.|| -...-
T Consensus 179 ~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~~~K~~aL~~~L~~~~~~~~IIF~~Tk~~~ 258 (629)
T PRK11634 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNAT 258 (629)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECHHHH
T ss_conf 03144666314659999999987569879740455555776305999965245799999998615888489998227889
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 7899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
+.+.+.|++.|+.... =|-.-+..+=.+.++..++... .+|||.=
T Consensus 259 ~~l~~~L~~~g~~~~~-----LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDv 304 (629)
T PRK11634 259 LEVAEALERNGYNSAA-----LNGDMNQALREQTLERLKDGRLDILIATDV 304 (629)
T ss_pred HHHHHHHHHCCCCEEE-----EECCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 9999999976996576-----568999999999999997599988987862
No 248
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=69.00 E-value=5.1 Score=20.77 Aligned_cols=13 Identities=8% Similarity=0.266 Sum_probs=5.2
Q ss_pred EEECCCCCCCCCC
Q ss_conf 9971832234412
Q gi|254780401|r 138 IIMDDGFHSADLQ 150 (338)
Q Consensus 138 iIlDDGfQh~~l~ 150 (338)
-+.+|.|+.+.|.
T Consensus 46 ~~f~~k~~~~~L~ 58 (325)
T PTZ00274 46 RVFSQRYEPYQLG 58 (325)
T ss_pred CCCCCCCEEEEEE
T ss_conf 6334452465745
No 249
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=68.79 E-value=4.7 Score=21.05 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=6.0
Q ss_pred CCCCHHHHHCCHHHH
Q ss_conf 376136521002556
Q gi|254780401|r 169 VFPAGPLRVPLSRQL 183 (338)
Q Consensus 169 llPaGpLREp~~~~l 183 (338)
+.-.|.+.+.+...|
T Consensus 118 L~~~g~~~~~~~~~L 132 (283)
T pfam00437 118 LGMTGAFDADIAEFL 132 (283)
T ss_pred HCCCCCCHHHHHHHH
T ss_conf 738977859999999
No 250
>PRK03670 competence damage-inducible protein A; Provisional
Probab=68.63 E-value=9.8 Score=18.75 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=31.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+-+|+|||=..-|.=.---..||++.|.+.|+++.-++
T Consensus 3 A~II~IGdElL~G~~~DtNs~~la~~L~~~Gi~v~~~~ 40 (252)
T PRK03670 3 AEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRIT 40 (252)
T ss_pred EEEEEECCCCCCCCEECHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999803400651052429999999996798188999
No 251
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=68.56 E-value=8.3 Score=19.29 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=12.6
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 8987415535789998874
Q gi|254780401|r 225 VLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 225 v~afsGIa~P~~F~~~L~~ 243 (338)
-+.||==|.|......+++
T Consensus 129 tlIf~LPGSp~Avr~~l~~ 147 (169)
T COG0521 129 TLIFNLPGSPGAVRDALEG 147 (169)
T ss_pred EEEEECCCCHHHHHHHHHH
T ss_conf 7999848984169999998
No 252
>PRK13764 ATPase; Provisional
Probab=68.40 E-value=3.9 Score=21.59 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=24.2
Q ss_pred CCEEEC--CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 230007--8887489999999985247315987
Q gi|254780401|r 50 GGFVMG--GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 50 GNitvG--GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|=+.+| |+|||-|+.+||.++.++|+-|-..
T Consensus 261 GilIaG~PGaGKsTfaqalA~~~~~~g~iVKTm 293 (605)
T PRK13764 261 GILIAGAPGAGKSTFAQALAEFYADMGKIVKTM 293 (605)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 499977999977899999999998479789832
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=68.38 E-value=5.1 Score=20.79 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-+++.++....+.|.++..++
T Consensus 28 pG~GKStl~lq~a~~~~~~g~~v~Yid 54 (218)
T cd01394 28 PGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 998499999999999863698699996
No 254
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=68.12 E-value=6.5 Score=20.02 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=33.0
Q ss_pred EECCEEE---CCCCCCHHHHHHHHHHHHCC-CCEEEEEECCCCC
Q ss_conf 9823000---78887489999999985247-3159876045787
Q gi|254780401|r 48 CVGGFVM---GGTGKTPTALAIAKAVIDKN-LKPGFLSRGYGRK 87 (338)
Q Consensus 48 ~VGNitv---GGtGKTP~v~~l~~~l~~~g-~~~~ilsRGYg~~ 87 (338)
-+||-.| .|+|||-+..+|+....+.+ -+++++.++.|-+
T Consensus 435 d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~~~iv~fDk~~g~~ 478 (796)
T COG3451 435 DVGHTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAY 478 (796)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 76974998898887899999999999874598189984897357
No 255
>TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process.
Probab=68.05 E-value=3.8 Score=21.69 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 748999999998524731598760457
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
=||=+..|++.|+++||+|+|+|=|..
T Consensus 87 L~~G~~Elv~~L~~~gykVav~SGGF~ 113 (223)
T TIGR00338 87 LTEGAEELVKTLKEKGYKVAVISGGFD 113 (223)
T ss_pred CCCCHHHHHHHHHHCCEEEEEEECCHH
T ss_conf 997878999999886907999857768
No 256
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=67.81 E-value=10 Score=18.64 Aligned_cols=19 Identities=16% Similarity=0.059 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHHHHCCCCE
Q ss_conf 87489999999985247315
Q gi|254780401|r 58 GKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 58 GKTP~v~~l~~~l~~~g~~~ 77 (338)
||=|+ ..+.+-|++.|-++
T Consensus 120 g~RPm-~~~~~~L~~lGA~i 138 (417)
T PRK09369 120 GARPV-DLHLKGLEALGAEI 138 (417)
T ss_pred CCCCC-HHHHHHHHHCCEEE
T ss_conf 68872-89998897488399
No 257
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=67.67 E-value=5.2 Score=20.73 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8887489999999985247315987
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|-|||=++..|++.|+++|++++..
T Consensus 9 ~VGKT~vt~~l~~~l~~~G~~v~~~ 33 (134)
T cd03109 9 DIGKTVATAILARALKEKGYRVAPL 33 (134)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8768999999999999779917787
No 258
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=67.47 E-value=4.4 Score=21.21 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.5
Q ss_pred EE-ECCEEECCCCCCHHHHHHHHHH
Q ss_conf 99-8230007888748999999998
Q gi|254780401|r 47 IC-VGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 47 I~-VGNitvGGtGKTP~v~~l~~~l 70 (338)
|| =||| |+|||-++..|++.+
T Consensus 2 I~IEGnI---G~GKTTl~~~La~~l 23 (219)
T cd02030 2 ITVDGNI---ASGKGKLAKELAEKL 23 (219)
T ss_pred EEEECCC---CCCHHHHHHHHHHHH
T ss_conf 8996785---679999999999985
No 259
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=67.37 E-value=5.6 Score=20.49 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=28.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 007888748999999998524731598760457877
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
.+||.+. .|..|++.|.++|++|.|+++.|++..
T Consensus 12 ~iGG~e~--~v~~La~~L~~~Gh~V~Vit~~~~~~~ 45 (398)
T cd03796 12 NLGGVET--HIYQLSQCLIKRGHKVVVITHAYGNRV 45 (398)
T ss_pred CCCCHHH--HHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9997799--999999999976998999968999887
No 260
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=67.19 E-value=7.2 Score=19.72 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=28.3
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|.+|-=++.=|+|||-+....++.|+.+ +++++|-
T Consensus 103 gv~~lNl~sSPGSGKTtLLe~ti~~L~~~-~~~aVIe 138 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIE 138 (290)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 91899930699878899999999987336-7579996
No 261
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=67.05 E-value=5.8 Score=20.36 Aligned_cols=92 Identities=22% Similarity=0.178 Sum_probs=43.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC--------------CCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC
Q ss_conf 0788874899999999852473159876045787--------------77755871456788770421233220576346
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK--------------SRISFRVDLEKHSAYDVGDEPLLLARRAVTIV 119 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~--------------~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V 119 (338)
--|+|||.+...+++..+.....+.++ =|=++. .+....+.+ ..|||....-.+|-.
T Consensus 23 ~~g~GKt~l~~~i~~~~~~~~~~V~~~-iGer~~ev~~~~~~~~~~~~~~~t~vv~~-------~~d~~~~~r~~~~~~- 93 (213)
T pfam00006 23 GSGTGKTVLLGMIARNAKADVVEVYVL-IGERGREVAEFIEELLGEGALKRTVVVAA-------TSDEPPAERYLAPYT- 93 (213)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHHHHCCCCCCCEEEEEE-------CCCCCHHHHHHHHHH-
T ss_conf 999988999999998566189359981-37777999999997521376650699984-------688987899999999-
Q ss_pred CCCHHHHHHHHCCCCCCE-EEECCCCCCCCCCCEEEEEE
Q ss_conf 520122566410245747-99718322344123069999
Q gi|254780401|r 120 TSDRKIGVQMLLQEGVDI-IIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 120 ~~~R~~~~~~~~~~~~di-iIlDDGfQh~~l~rdl~Ivl 157 (338)
+ ..-|++....+-|| +++||=..|-.-.|.+...+
T Consensus 94 a---~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~ 129 (213)
T pfam00006 94 A---LTIAEYFRDQGKDVLLLLDSLTRFARALREISLLL 129 (213)
T ss_pred H---HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC
T ss_conf 9---99999999769968998378059999987650014
No 262
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=67.05 E-value=11 Score=18.54 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 111686389874155357899988740100001221433234898999999997
Q gi|254780401|r 218 FDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQ 271 (338)
Q Consensus 218 ~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~ 271 (338)
..+.||++.+++|-+++..+...++++|.+++.. .+.=+| ..|.+++.+.
T Consensus 296 ~~L~GKrv~i~~Gg~~~~~~i~~~~eLGmevV~~-g~~~~~---~~Dye~~~~~ 345 (421)
T cd01976 296 PRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGT-GYEFAH---RDDYERTEVI 345 (421)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE-EEECCC---HHHHHHHHHH
T ss_conf 8708988999899874689999999879889997-312274---7679999850
No 263
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=66.88 E-value=4.9 Score=20.93 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCCCCCCCCC--CHHHH----HHHHHHHHHHHH-------HHHH-HHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 8873322488--99999----999999999999-------9999-74046433889889982300078887489999999
Q gi|254780401|r 3 KSPLFWWKAR--GFYSF----FLYPISWIYSFI-------SSKL-MKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 3 ~~p~fw~~~~--~~~~~----lL~Pls~iy~~~-------~~~~-~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+.+.|-|... +-+.. -..+++-+.+.- .|-+ +..+ .+.-.|.--| .=||||+.+|-++..
T Consensus 2 ~~~AfrW~~~~~g~L~~i~~~d~v~l~~L~Gie~Qk~~l~~NT~~F~~G---~pAnnvLLwG---~RGtGKSSlVKall~ 75 (248)
T pfam05673 2 AAPAFRWRRGESGALEPVPHPDPVDLDDLVGIDRQKEALLRNTEQFLAG---LPANNVLLWG---ARGTGKSSLVKALLN 75 (248)
T ss_pred CCCEEEEECCCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCC---CCCCCEEEEC---CCCCCHHHHHHHHHH
T ss_conf 9742687538988877517889899889349399999999999999808---9861367676---898988899999999
Q ss_pred HHHHCCCCEEEEEEC
Q ss_conf 985247315987604
Q gi|254780401|r 69 AVIDKNLKPGFLSRG 83 (338)
Q Consensus 69 ~l~~~g~~~~ilsRG 83 (338)
.+..+|.+..=|.|-
T Consensus 76 ~~~~~gLrlIEv~k~ 90 (248)
T pfam05673 76 EYADQGLRLIEVDKD 90 (248)
T ss_pred HHHHCCCEEEEECHH
T ss_conf 863149569998788
No 264
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.73 E-value=11 Score=18.50 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=27.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 889889982300078887489999999985247315987
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.+.++|+ ++|-.|||-++..+...|+..|.++.+.
T Consensus 115 ~~~~~Ia----VTGTnGKTTttsli~~iL~~~g~~~~~~ 149 (487)
T PRK03369 115 PPRRWLV----VTGTNGKTTTTSMLHAMLRAAGRRSVLC 149 (487)
T ss_pred CCCCEEE----EECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7665599----9798872789999999998589985998
No 265
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=66.60 E-value=4.1 Score=21.42 Aligned_cols=17 Identities=47% Similarity=0.644 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 88874899999999852
Q gi|254780401|r 56 GTGKTPTALAIAKAVID 72 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~ 72 (338)
|||||-+|..|...|.+
T Consensus 172 GTGKTttV~~lLa~l~~ 188 (607)
T PRK10875 172 GTGKTTTVAKLLAALIQ 188 (607)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 98778899999999999
No 266
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=66.41 E-value=7.9 Score=19.44 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=9.0
Q ss_pred ECCHHHHHHHHHHHHHH
Q ss_conf 57878999999999999
Q gi|254780401|r 312 FENPDDLTNLVEMTVVS 328 (338)
Q Consensus 312 ~~~~~~l~~~l~~~i~~ 328 (338)
+-.+..+.+.+.+.+.+
T Consensus 198 ~CGp~~m~~~v~~~L~~ 214 (227)
T cd06213 198 LCGPPAMIDAAIAVLRA 214 (227)
T ss_pred EECCHHHHHHHHHHHHH
T ss_conf 93999999999999998
No 267
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=66.34 E-value=6.2 Score=20.20 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf 7888748999999998-52473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAV-IDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l-~~~g~~~~ils 81 (338)
=|.|||-++..++-.+ .+.|++|+++|
T Consensus 22 ~g~GKS~~~~~la~~~a~~~g~~V~~~S 49 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999999999997799599993
No 268
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=65.75 E-value=5.5 Score=20.53 Aligned_cols=30 Identities=33% Similarity=0.606 Sum_probs=23.0
Q ss_pred EEECCCCC--CHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 00078887--48999999998524731598760
Q gi|254780401|r 52 FVMGGTGK--TPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGK--TP~v~~l~~~l~~~g~~~~ilsR 82 (338)
++.||||= .| .+.+++.|+++|+++..+..
T Consensus 6 i~~GGTGGHi~P-alala~~L~~~~~~v~~ig~ 37 (352)
T PRK12446 6 FTGGGSAGHVTP-NLAIIPKLIEDNWDISYIGS 37 (352)
T ss_pred EEECCCHHHHHH-HHHHHHHHHHCCCEEEEEEC
T ss_conf 995875888999-99999999848995999988
No 269
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=65.74 E-value=11 Score=18.37 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=22.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 7634652012256641024574799718322
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQ 145 (338)
+-|.++.+-.+|...+.+..+|+||||-.+.
T Consensus 35 ~~V~~a~~~~eal~~~~~~~~DliilDi~lp 65 (240)
T PRK10710 35 YAPTLISHGDEVLPYVRQTPPDLILLDLMLP 65 (240)
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999989999999999737998999879998
No 270
>KOG0337 consensus
Probab=65.41 E-value=11 Score=18.32 Aligned_cols=109 Identities=27% Similarity=0.311 Sum_probs=54.4
Q ss_pred CCCEEEECCEEE----CCCCCC-----HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH
Q ss_conf 898899823000----788874-----89999999985247315987604578777755871456788770421233220
Q gi|254780401|r 43 PIPVICVGGFVM----GGTGKT-----PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR 113 (338)
Q Consensus 43 ~~pVI~VGNitv----GGtGKT-----P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~ 113 (338)
-+|.|-=|-=.| -|+||| |++..|.... +-|.+-.|+| +...-+.++=+=-.-+++
T Consensus 51 TipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ralils--------------ptreLa~qtlkvvkdlgr 115 (529)
T KOG0337 51 TIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILS--------------PTRELALQTLKVVKDLGR 115 (529)
T ss_pred CCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCC-CCCCCEEECC--------------CCHHHHHHHHHHHHHHCC
T ss_conf 4420031452100552278610467889999986136-4462024326--------------708899999999998515
Q ss_pred ----CCCCCCCCCHHHHHHHHCCCCCCEEEECCC-CCCCCCCCE-----EEEEEEC-CCCCCCC
Q ss_conf ----576346520122566410245747997183-223441230-----6999961-8433566
Q gi|254780401|r 114 ----RAVTIVTSDRKIGVQMLLQEGVDIIIMDDG-FHSADLQAD-----FSLIVVN-SHRGLGN 166 (338)
Q Consensus 114 ----~~pv~V~~~R~~~~~~~~~~~~diiIlDDG-fQh~~l~rd-----l~Ivl~d-~~~~~gn 166 (338)
++...|+-|+.+-...+++.++|+|+.--| +-|....-+ ++.||+| +.+-|.-
T Consensus 116 gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337 116 GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred CCCHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEHHEECCCCCEEEEEEHHHHHHHHH
T ss_conf 4211210112632488999984159987982485134200210012132256641013478765
No 271
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=65.24 E-value=6.2 Score=20.19 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf 7888748999999998-52473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAV-IDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l-~~~g~~~~ils 81 (338)
=|.|||-++..++..+ .+.|+++++.|
T Consensus 39 pg~GKT~f~~~~a~~~~~~~g~~vl~~S 66 (271)
T cd01122 39 TGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9986999999999999997699089997
No 272
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=65.01 E-value=6.3 Score=20.12 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf 7888748999999998-52473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAV-IDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l-~~~g~~~~ils 81 (338)
=|.|||-++..++..+ .+.|++|+++|
T Consensus 28 pg~GKS~~~~~~a~~~a~~~g~~Vl~~s 55 (186)
T pfam03796 28 PSMGKTAFALNIARNAALKQDKPVLFFS 55 (186)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9998799999999999997099668754
No 273
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=64.87 E-value=12 Score=18.25 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-+..++.+++.+. ....|++
T Consensus 10 TGSGKTTtl~all~~i~~~-~~~~IiT 35 (198)
T cd01131 10 TGSGKSTTLAAMIDYINKN-KTHHILT 35 (198)
T ss_pred CCCCHHHHHHHHHHHHCCC-CCCEEEE
T ss_conf 9997999999999853637-8836999
No 274
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=64.87 E-value=5.8 Score=20.37 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECC-CCCH--HHHCC-HHHHHHH------CCCCCCCCCHHH
Q ss_conf 888748999999998524731598760457877775587145-6788--77042-1233220------576346520122
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLE-KHSA--YDVGD-EPLLLAR------RAVTIVTSDRKI 125 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~-~~~~--~~vGD-Ep~lla~------~~pv~V~~~R~~ 125 (338)
|-|||=.+-.||+.++++|++++..- -|.+. ...+ .-++| |.++=-. ..|+.|++=+.+
T Consensus 8 ~VGKT~~ss~La~~lk~~G~~~g~~K-----------pv~tG~~~~~~dL~~~D~~~L~~~~~~~~~~~~Pi~~~P~~F~ 76 (187)
T TIGR00347 8 GVGKTVVSSALAKKLKKAGYSVGYYK-----------PVQTGIEETAEDLRNEDTELLQNISGTALDLDGPIEVNPYAFA 76 (187)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEC-----------CHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 86178998999999997598525112-----------0001576677631056799998765443213898442663205
Q ss_pred H--HHHH----CCCCCCEEEECCCCC--CCCCCCEEEEEEECCCCCCCCCCCCCCH
Q ss_conf 5--6641----024574799718322--3441230699996184335665537613
Q gi|254780401|r 126 G--VQML----LQEGVDIIIMDDGFH--SADLQADFSLIVVNSHRGLGNGLVFPAG 173 (338)
Q Consensus 126 ~--~~~~----~~~~~diiIlDDGfQ--h~~l~rdl~Ivl~d~~~~~gn~~llPaG 173 (338)
. +.++ +...+|+-++++.+| +-.|....|.|++-+- | |.+-|..
T Consensus 77 ~PlsP~~A~~~Eg~~i~~~~~~~~~~naye~l~~~~d~~lVEGA---G-G~~vP~~ 128 (187)
T TIGR00347 77 LPLSPHIAAKQEGRPIDLEELSKHLRNAYEELEEKYDFVLVEGA---G-GLCVPIT 128 (187)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC---C-CCCCCCC
T ss_conf 68862588861778326888987887899999971791799833---6-2426666
No 275
>pfam02641 DUF190 Uncharacterized ACR, COG1993.
Probab=64.82 E-value=12 Score=18.25 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC----CCCHHHHHHHHCC-
Q ss_conf 87489999999985247315987604578777755871456788770421233220576346----5201225664102-
Q gi|254780401|r 58 GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIV----TSDRKIGVQMLLQ- 132 (338)
Q Consensus 58 GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V----~~~R~~~~~~~~~- 132 (338)
|.-|+-.++.+.+++.|..=+.+.||.-|-.... . -| .+-.+-++.+-||+| .+.|.++..-..+
T Consensus 17 ~g~pl~~~iv~~lre~giaGaTV~rGi~GfG~~~-~----ih-----~~~~~~ls~dlPvvIe~VD~~eki~~~lp~l~~ 86 (101)
T pfam02641 17 EGLPIYKALVERLKEEGIRGATVLRGIAGYGKHK-E----VH-----SDKLFQLSRRLPVVIEIVDTEEKIARFLDEIKE 86 (101)
T ss_pred CCEEHHHHHHHHHHHCCCCEEEEEEEEEECCCCC-C----CC-----CCCHHHHCCCCCEEEEEEECHHHHHHHHHHHHH
T ss_conf 9789899999999977997799997026027898-6----31-----644444269999899999399999999999997
Q ss_pred C-CCCEEEECC
Q ss_conf 4-574799718
Q gi|254780401|r 133 E-GVDIIIMDD 142 (338)
Q Consensus 133 ~-~~diiIlDD 142 (338)
. .--+|.+.|
T Consensus 87 ~~~~Glit~e~ 97 (101)
T pfam02641 87 LIKNGLITSED 97 (101)
T ss_pred HCCCCEEEEEE
T ss_conf 64686699999
No 276
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=64.72 E-value=6.5 Score=20.03 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 8789999999999
Q gi|254780401|r 314 NPDDLTNLVEMTV 326 (338)
Q Consensus 314 ~~~~l~~~l~~~i 326 (338)
.++...+.+.+..
T Consensus 186 GP~~Mmk~v~~~~ 198 (248)
T PRK00054 186 GPEIMMKKVVEIL 198 (248)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9989999999998
No 277
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=64.63 E-value=6 Score=20.26 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+|+|||-+++=|++.|+++|.||++.
T Consensus 11 ~~sGKTsVaLGL~~aL~r~g~KVGfF 36 (702)
T PRK05632 11 TGVGLTSVSLGLVRALERKGVKVGFF 36 (702)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99879999999999998368847998
No 278
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=64.61 E-value=3.7 Score=21.79 Aligned_cols=18 Identities=44% Similarity=0.414 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|||||+++..+|+.|.-
T Consensus 49 RGvGKTT~ARIfAKaLNC 66 (718)
T PRK07133 49 HGTGKTSVAKIFANALNC 66 (718)
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 986889999999999679
No 279
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=64.58 E-value=9.7 Score=18.79 Aligned_cols=21 Identities=10% Similarity=0.343 Sum_probs=10.5
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHH
Q ss_conf 86389874-15535789998874
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQ 243 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~ 243 (338)
.++++.++ |||- ..|..+|+.
T Consensus 97 ~~~~vliAgG~GI-tP~~s~l~~ 118 (232)
T cd06190 97 DRDIVCIAGGSGL-APMLSILRG 118 (232)
T ss_pred CCCEEEEECCCCC-CHHHHHHHH
T ss_conf 9978999847673-359999999
No 280
>KOG2825 consensus
Probab=64.55 E-value=6.5 Score=20.01 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=30.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 889982300078887489999999985247315987604
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.-|-||- -||.|||...--||-+|.+-+-.+-|||--
T Consensus 20 KwifVGG--KGGVGKTTcs~sLAvqla~~r~~vLiISTD 56 (323)
T KOG2825 20 KWIFVGG--KGGVGKTTCSCSLAVQLAKVRESVLIISTD 56 (323)
T ss_pred EEEEECC--CCCCCCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 6999767--677676531268999986168864786168
No 281
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=64.27 E-value=11 Score=18.36 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=67.0
Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCCCCC-CCH
Q ss_conf 823000788--874899999999852473159876045787777558714567--887704212332205763465-201
Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVTIVT-SDR 123 (338)
Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv~V~-~~R 123 (338)
||=+|.||- |=-+.+..+++.....|+++.-+-+||.|-..+.+..-+..+ ....-|- ..|-..++|-... ..+
T Consensus 3 IaIltsGGd~pGmNa~Ir~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GG-t~LgtsR~~~~~~~~~~ 81 (317)
T cd00763 3 IGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGG-TFLGSARFPEFKDEEGQ 81 (317)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCC-CCCCCCCCCCCCCHHHH
T ss_conf 99995788856889999999999987899999982567787079816289999987986599-50146778754556789
Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCCC--CCEEEEEEECC---CCCCCCCCCCCC
Q ss_conf 22566410245747997---183223441--23069999618---433566553761
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSADL--QADFSLIVVNS---HRGLGNGLVFPA 172 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~l--~rdl~Ivl~d~---~~~~gn~~llPa 172 (338)
.++++.+.+.+.|.++. ||.|+--.. +.++.++.+.. ++-.|.++.+=+
T Consensus 82 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~l~e~~i~vigIPkTIDNDi~gtd~t~Gf 138 (317)
T cd00763 82 AKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDNDIPGTDYTIGF 138 (317)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH
T ss_conf 999999998299989995694589999999974997797135446788887878688
No 282
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=63.89 E-value=9.9 Score=18.74 Aligned_cols=15 Identities=13% Similarity=0.095 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 787899999999999
Q gi|254780401|r 313 ENPDDLTNLVEMTVV 327 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~ 327 (338)
-.+..+.+.+.+.+.
T Consensus 255 CGPp~Mv~a~~~~L~ 269 (283)
T cd06188 255 CGPPPMNSAVIKMLD 269 (283)
T ss_pred ECCHHHHHHHHHHHH
T ss_conf 498999999999999
No 283
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=63.81 E-value=12 Score=18.17 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC-------------
Q ss_conf 788874899999999852473159876045787777558714567887704212332205--76346-------------
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV------------- 119 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V------------- 119 (338)
=.||||-+..-+|+.+....-.+.++- ++++ .-++||-| |.+. +.|+.
T Consensus 178 PkaGKT~lLq~IA~aI~~N~Pe~~liV----------LLID---ERPEEVTd----m~r~v~~eV~aStfD~~~~~H~~v 240 (416)
T PRK09376 178 PKAGKTVLLQNIANSITTNHPEVHLIV----------LLID---ERPEEVTD----MQRSVKGEVVASTFDEPAERHVQV 240 (416)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE----------EEEC---CCCHHHHH----HHHHCCEEEEEECCCCCHHHHHHH
T ss_conf 987547999999999985699719999----------9904---89347778----775046189997799987899999
Q ss_pred CCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 52012256641024574799718322344123069999618
Q gi|254780401|r 120 TSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNS 160 (338)
Q Consensus 120 ~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~ 160 (338)
+.-=.+-|+.+.+.+-||+||=|.. .+|.|-+|.+.-.+
T Consensus 241 ae~~lerAkRlvE~G~DVvillDSi--TRLaRAyN~~~~~s 279 (416)
T PRK09376 241 AEMVIEKAKRLVEHGKDVVILLDSI--TRLARAYNTVVPSS 279 (416)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHCCCCCC
T ss_conf 9999999999987699789997315--78888862346998
No 284
>PRK09417 mogA molybdenum cofactor biosynthesis protein; Provisional
Probab=63.80 E-value=9.8 Score=18.77 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=14.6
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 38987415535789998874
Q gi|254780401|r 224 KVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 224 ~v~afsGIa~P~~F~~~L~~ 243 (338)
+-+.++==|.|..-.+.|+.
T Consensus 126 ~TLIiNLPGSPkav~EcLe~ 145 (192)
T PRK09417 126 QSLIINLPGQPKSIKETLEG 145 (192)
T ss_pred CEEEEECCCCHHHHHHHHHH
T ss_conf 88999859987889999987
No 285
>PRK10436 hypothetical protein; Provisional
Probab=63.53 E-value=12 Score=18.09 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 874899999999852
Q gi|254780401|r 58 GKTPTALAIAKAVID 72 (338)
Q Consensus 58 GKTP~v~~l~~~l~~ 72 (338)
.-.|.+..+-..|.+
T Consensus 77 ~~~piv~lvn~il~~ 91 (461)
T PRK10436 77 GDQPVAQLLNQTLRS 91 (461)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 777799999999999
No 286
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=63.49 E-value=8.5 Score=19.19 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=34.0
Q ss_pred EECCEEE---CCCCCCHHHHHHHHHHHHCCC----CEEEEEECCCCC
Q ss_conf 9823000---788874899999999852473----159876045787
Q gi|254780401|r 48 CVGGFVM---GGTGKTPTALAIAKAVIDKNL----KPGFLSRGYGRK 87 (338)
Q Consensus 48 ~VGNitv---GGtGKTP~v~~l~~~l~~~g~----~~~ilsRGYg~~ 87 (338)
++||--+ =|+|||-+.-+|+-.+.+-+- ++..+.|++|..
T Consensus 515 ~~GhT~IfG~~G~GKTtLl~fL~a~~~ky~~~~a~~~~~fDkd~g~~ 561 (931)
T TIGR00929 515 VLGHTLIFGPTGSGKTTLLNFLLAQLQKYKPNFALTIFAFDKDRGME 561 (931)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH
T ss_conf 03877788888984699999999997424889870699988789821
No 287
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=63.45 E-value=12 Score=18.08 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=45.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CCEEEECCCCCHHHHCC--HHHHHHHCCCCCCCCCHHHH
Q ss_conf 078887489999999985247315987604578777-----75587145678877042--12332205763465201225
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR-----ISFRVDLEKHSAYDVGD--EPLLLARRAVTIVTSDRKIG 126 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~-----~~~~v~~~~~~~~~vGD--Ep~lla~~~pv~V~~~R~~~ 126 (338)
..|||||-+-...-+.....||+|.=.+=. ||.. +.-+....-+++ +.+- ....|-.+..++|++-=..+
T Consensus 405 ~AGaGKStmL~aAReawEa~GyrV~GaALs--GkAAegLe~~sGI~SrTlAs~-e~~w~~gr~~L~~~dVlVIDEAGMVg 481 (1102)
T PRK13826 405 RAGAGKTTMMKAAREAWEAAGYRVVGGALA--GKAAEGLEKEAGIASRTLSSW-ELRWNQGRDQLDNKTVFVLDEAGMVS 481 (1102)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHHHCCCCCCHHHHHH-HHHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf 288878899999999999779779801500--789997753469530338999-98743586556787389984555655
Q ss_pred -------HHHHCCCCCCEEEECCCCCCCCCCCE
Q ss_conf -------66410245747997183223441230
Q gi|254780401|r 127 -------VQMLLQEGVDIIIMDDGFHSADLQAD 152 (338)
Q Consensus 127 -------~~~~~~~~~diiIlDDGfQh~~l~rd 152 (338)
.+.+.+.|+.+|+.-|..|.-.+...
T Consensus 482 srqmarvl~~ae~aGAKvVLVGD~~QLQpIeAG 514 (1102)
T PRK13826 482 SRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAG 514 (1102)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCC
T ss_conf 799999999999759989996887882761046
No 288
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=62.92 E-value=5.2 Score=20.73 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
||-|||=++.-||+|+..++..+..+
T Consensus 12 GGVGKS~va~~LaQY~~~~~~~~~~i 37 (241)
T PRK13886 12 GGVGKSMIAATIAQYKAGKGQKPLCI 37 (241)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 86309999999999998359998556
No 289
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=62.79 E-value=7.1 Score=19.76 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=31.3
Q ss_pred CCCCCCCEEEECCEEE----C----------------CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4338898899823000----7----------------8887489999999985247315987
Q gi|254780401|r 39 RLHAPIPVICVGGFVM----G----------------GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 39 ~~~~~~pVI~VGNitv----G----------------GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
....++++|+-|+++. | +||||-+++.++...++.|..++.+
T Consensus 28 ~~~~~~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~i 89 (325)
T cd00983 28 DAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFI 89 (325)
T ss_pred CCCCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 77886534626819999997589966880899988987779999999999987359839999
No 290
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=62.57 E-value=6.4 Score=20.08 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=18.6
Q ss_pred CCEEEEC-CEEECCCCCCHHHHHHHHHHH
Q ss_conf 9889982-300078887489999999985
Q gi|254780401|r 44 IPVICVG-GFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 44 ~pVI~VG-NitvGGtGKTP~v~~l~~~l~ 71 (338)
.++|.|+ .| |+|||.++..|++.|.
T Consensus 4 ~~~IvI~G~I---G~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMI---GAGKSTLAQALAEHLG 29 (216)
T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHHC
T ss_conf 6089984464---4687899999998838
No 291
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=62.38 E-value=9.3 Score=18.91 Aligned_cols=53 Identities=25% Similarity=0.179 Sum_probs=30.3
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCC--C-EEEEEECCCCCCCCCEEEEC
Q ss_conf 38898899823000788874899999999852473--1-59876045787777558714
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNL--K-PGFLSRGYGRKSRISFRVDL 96 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~--~-~~ilsRGYg~~~~~~~~v~~ 96 (338)
+..--|.--|.+ |+|||-+|..+++.|-..+. + .-.|.+=|......-.++|.
T Consensus 13 ~~G~vi~L~G~L---GaGKTtfvr~i~~~lg~~~~V~SPTF~lv~~Y~~~~~~i~H~Dl 68 (123)
T pfam02367 13 KAGDVVLLSGDL---GAGKTTFVRGLAKGLGITGNVTSPTFTLVNVYEPGKLPLYHYDL 68 (123)
T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 999799998887---78899999999998599887379955889997089963999983
No 292
>pfam00175 NAD_binding_1 Oxidoreductase NAD-binding domain. Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.
Probab=62.34 E-value=5.3 Score=20.69 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=19.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 00078887489999999985247315987
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.+||||=||+...|-..+...-..+..+
T Consensus 1 lIAgG~GitP~~sml~~~~~~~~~~~v~l 29 (106)
T pfam00175 1 MIAGGTGIAPLYSVLKALLEDEDGTEVYL 29 (106)
T ss_pred CEEEEEEHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 90889659999999999997189986899
No 293
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=62.27 E-value=13 Score=17.93 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
-|....+=.+|...+.+..+|+||+|
T Consensus 24 ~v~~a~~g~~al~~~~~~~~dlvi~D 49 (111)
T pfam00072 24 VVAEADDGEEALELLKEKRPDLILLD 49 (111)
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 99998999999999984799899995
No 294
>KOG0744 consensus
Probab=62.15 E-value=4.7 Score=21.05 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCCCCCEEEECCEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 4338898899823000----78887489999999985247315987604578
Q gi|254780401|r 39 RLHAPIPVICVGGFVM----GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 39 ~~~~~~pVI~VGNitv----GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
.++....+|..--+.. -|||||.++-+||+.|.=+ ..+|-|.+
T Consensus 166 ek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR-----~~~~y~~~ 212 (423)
T KOG0744 166 EKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR-----TNDRYYKG 212 (423)
T ss_pred HCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEE-----ECCCCCCC
T ss_conf 617887446641489985799988227999998751465-----23764440
No 295
>PHA00520 packaging NTPase P4
Probab=62.00 E-value=4.9 Score=20.88 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 7888748999999998524731598
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
||+||||++-.+++.+-.++..+.|
T Consensus 122 t~sGKT~~lna~~~~~~~k~~~v~I 146 (326)
T PHA00520 122 TGSGKTPLLNALGEPLGGKDKDVTV 146 (326)
T ss_pred CCCCCCHHHHHHHCCCCCCCCCEEE
T ss_conf 8888675566542102589987489
No 296
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=61.98 E-value=5.5 Score=20.53 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-.++.+|-. |||||-++..+++.|....+.++.+.
T Consensus 44 g~~lltGe~---GtGKTtllr~l~~~l~~~~~~~~~i~ 78 (269)
T TIGR03015 44 GFILITGEV---GAGKTTLIRNLLKRLDQERVVAAKLV 78 (269)
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 659997299---89889999999984593454899976
No 297
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=61.95 E-value=9.5 Score=18.87 Aligned_cols=28 Identities=21% Similarity=-0.024 Sum_probs=13.1
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 999998524731598760457877775587
Q gi|254780401|r 65 AIAKAVIDKNLKPGFLSRGYGRKSRISFRV 94 (338)
Q Consensus 65 ~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v 94 (338)
-|...|.++| +.+=|-.=|+-+=+.+++
T Consensus 54 ~LL~~L~~~~--iflpSaCGG~gtCg~Ck~ 81 (408)
T PRK05464 54 KLLGALASSG--IFVSSACGGGGSCGQCRV 81 (408)
T ss_pred HHHHHHHHCC--CCCCCCCCCCCEEECCEE
T ss_conf 4899886489--362237899964504399
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=61.78 E-value=8.5 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=9.1
Q ss_pred CCCCCCHHHHHH
Q ss_conf 788874899999
Q gi|254780401|r 55 GGTGKTPTALAI 66 (338)
Q Consensus 55 GGtGKTP~v~~l 66 (338)
=|+|||-++..+
T Consensus 30 nGsGKSTLl~~~ 41 (176)
T cd03238 30 SGSGKSTLVNEG 41 (176)
T ss_pred CCCCHHHHHHHH
T ss_conf 999899999988
No 299
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=61.77 E-value=12 Score=18.04 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 7878999999999999
Q gi|254780401|r 313 ENPDDLTNLVEMTVVS 328 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~ 328 (338)
-.+..+.+.+.+.+.+
T Consensus 203 CGp~~m~~~~~~~L~~ 218 (232)
T cd06212 203 CGPPPMIDAALPVLEM 218 (232)
T ss_pred ECCHHHHHHHHHHHHH
T ss_conf 3999999999999998
No 300
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=61.72 E-value=6.7 Score=19.93 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=22.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0078887489999999985247315987
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.+-|||||=+++.|+..|.+.|+--=||
T Consensus 443 MATGTGKTrtaial~~rLlk~~~~kRIL 470 (1126)
T PRK11448 443 MATGTGKTRTAIALMYRLLKAKRFKRIL 470 (1126)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 2488858989999999999658767257
No 301
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=61.62 E-value=5.1 Score=20.76 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=44.9
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-----HHHHCCCCC
Q ss_conf 988998230007888748999999998524731598760457877775587145678877042123-----322057634
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-----LLARRAVTI 118 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-----lla~~~pv~ 118 (338)
|-.||.||+ .-.||+..+.+.+... ..+-+-|.|=.. ...|..+- .|+.++ +-
T Consensus 3 ilfvC~gN~-----cRSpmAe~l~~~~~~~-~~i~v~SAG~~~---------------~~~G~~~~~~a~~~l~~~G-id 60 (141)
T cd00115 3 VLFVCTGNI-----CRSPMAEAIFRHLAPK-LDIEVDSAGTSG---------------WHVGGRPDPRAIAVLAEHG-ID 60 (141)
T ss_pred EEEECCCCH-----HHHHHHHHHHHHHCCC-CCEEEEEEECCC---------------CCCCCCCCHHHHHHHHHHC-CC
T ss_conf 999949947-----5999999999986543-886999610256---------------6779998988999999949-98
Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 6520122566410245747997183223441
Q gi|254780401|r 119 VTSDRKIGVQMLLQEGVDIIIMDDGFHSADL 149 (338)
Q Consensus 119 V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l 149 (338)
++..|.+.+....-..+|+||.-|--|...|
T Consensus 61 ~~~h~sr~i~~~~~~~~DlIl~M~~~~~~~l 91 (141)
T cd00115 61 ISGHRARQLTEDDFDEFDLIITMDESNLAEL 91 (141)
T ss_pred CCCCCEEECCCCCCCCCCEEEECCHHHHHHH
T ss_conf 4345101243025665899998986899999
No 302
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=61.59 E-value=13 Score=17.92 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=9.8
Q ss_pred CCCCCCHHHH-HHHHHHH
Q ss_conf 7888748999-9999985
Q gi|254780401|r 55 GGTGKTPTAL-AIAKAVI 71 (338)
Q Consensus 55 GGtGKTP~v~-~l~~~l~ 71 (338)
=|+|||=... .+.+.+.
T Consensus 9 tGsGKT~~~~~~~~~~~~ 26 (144)
T cd00046 9 TGSGKTLAALLPILELLD 26 (144)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 971799999999999997
No 303
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.51 E-value=11 Score=18.48 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=27.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.|||+| +|-.|||-++..++..|++.|+++.+.
T Consensus 109 ~~~~IaV----TGTnGKTTTtsli~~iL~~~g~~~~~~ 142 (445)
T PRK04308 109 GDKVIAI----TGSNGKTTVTSLVGYLCIKCGLDTVIA 142 (445)
T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9957999----489983779999999999759962998
No 304
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=61.40 E-value=11 Score=18.34 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=9.0
Q ss_pred CEEEEEE-CCCCHHHHHHHHHH
Q ss_conf 6389874-15535789998874
Q gi|254780401|r 223 KKVLAFS-GIADTEKFFTTVRQ 243 (338)
Q Consensus 223 k~v~afs-GIa~P~~F~~~L~~ 243 (338)
.+++.++ |||= ..|..+|+.
T Consensus 123 ~~~vliAgG~Gi-tP~~sml~~ 143 (243)
T cd06216 123 PRLLLIAAGSGI-TPVMSMLRT 143 (243)
T ss_pred CCEEEEEECCCC-CHHHHHHHH
T ss_conf 878999907877-828999999
No 305
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=61.35 E-value=8.3 Score=19.28 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=21.0
Q ss_pred CCCCCCHHHHH-HHHHHHHCCCCEEEEE
Q ss_conf 78887489999-9999852473159876
Q gi|254780401|r 55 GGTGKTPTALA-IAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~-l~~~l~~~g~~~~ils 81 (338)
=|||||-++.. +++.+.+.|.++..+|
T Consensus 28 pGsGKT~la~qfl~~ga~~~ge~~lYis 55 (231)
T pfam06745 28 PGTGKTIFGLQFLYNGALEYGEPGVYVT 55 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9725999999999999986589689998
No 306
>PRK04328 hypothetical protein; Provisional
Probab=61.24 E-value=9.2 Score=18.94 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-++...+..-.++|-++..+|
T Consensus 33 pGtGKT~la~qFl~~g~~~GE~~lyis 59 (250)
T PRK04328 33 PGTGKSIFSQQFLWNGLQMGEPGIYVA 59 (250)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999989999999999987699779999
No 307
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=61.11 E-value=8.2 Score=19.31 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHC--CCCEEEEEE-CC
Q ss_conf 888748999999998524--731598760-45
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDK--NLKPGFLSR-GY 84 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~--g~~~~ilsR-GY 84 (338)
|+|||-++..|.+.|.+. +.+++++|= ||
T Consensus 9 gSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f 40 (220)
T cd02025 9 AVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 87799999999998600269994899978787
No 308
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.82 E-value=9.2 Score=18.97 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.|||+| +|--|||.++..++..|+..|+++.+.
T Consensus 107 ~~~iIaV----TGTnGKTTTtsli~~iL~~~g~~~~~g 140 (438)
T PRK04663 107 DKPVIAI----TGSNGKSTVTDLTGVMAKAAGVKVAVG 140 (438)
T ss_pred CCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 8978999----489982899999999998289970687
No 309
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=60.79 E-value=14 Score=17.76 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=58.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC---CCC-------CCCHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576---346-------52012
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV---TIV-------TSDRK 124 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p---v~V-------~~~R~ 124 (338)
-|.|||-+-+..+-++..+|.++.+|- +...-+.++.+-=.-++...- +-+ .+.+.
T Consensus 106 TGvGKTTfg~~~sl~~a~kgkr~yii~--------------PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~eke 171 (1187)
T COG1110 106 TGVGKTTFGLLMSLYLAKKGKRVYIIV--------------PTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKE 171 (1187)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEE--------------CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
T ss_conf 887654799999999875587499996--------------678999999999999886537852466531236657799
Q ss_pred HHHHHHCCCCCCEEEECCCCCCCCC---C-CEEEEEEECCCCCC
Q ss_conf 2566410245747997183223441---2-30699996184335
Q gi|254780401|r 125 IGVQMLLQEGVDIIIMDDGFHSADL---Q-ADFSLIVVNSHRGL 164 (338)
Q Consensus 125 ~~~~~~~~~~~diiIlDDGfQh~~l---~-rdl~Ivl~d~~~~~ 164 (338)
.+.+.+.+-++|++|---.|-+.+. . ..+|++.+|..+-+
T Consensus 172 e~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 172 EALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCHHHH
T ss_conf 99999865996399974787886699840457778998047889
No 310
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=60.69 E-value=12 Score=18.25 Aligned_cols=16 Identities=6% Similarity=0.028 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 7878999999999999
Q gi|254780401|r 313 ENPDDLTNLVEMTVVS 328 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~ 328 (338)
=.+..+.+.+.+.+.+
T Consensus 196 CGP~~m~~~v~~~L~~ 211 (224)
T cd06189 196 CGSPEMVYAARDDFVE 211 (224)
T ss_pred ECCHHHHHHHHHHHHH
T ss_conf 1999999999999998
No 311
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.53 E-value=9.8 Score=18.75 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=26.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9889982300078887489999999985247315987
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.++|. .+|-.|||-+|..|...|+..|+++.+.
T Consensus 115 ~k~Ia----VTGTNGKTTTt~ll~~iL~~~g~~~~~~ 147 (468)
T PRK04690 115 PGAVC----VTGTKGKSTTTALLAHLLRAAGHRTALV 147 (468)
T ss_pred CCEEE----EECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 87899----9699858999999999998579982898
No 312
>pfam00931 NB-ARC NB-ARC domain.
Probab=60.50 E-value=14 Score=17.72 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=18.1
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8988998230007888748999999998
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
.+.||+| .=+||.|||-++..+.+..
T Consensus 18 ~~~vI~I--~G~gGiGKTtLA~~v~~~~ 43 (285)
T pfam00931 18 NLGVVGI--VGMGGVGKTTLAKQIYNDD 43 (285)
T ss_pred CCEEEEE--ECCCCCCHHHHHHHHHCCH
T ss_conf 9539998--8999563999999997165
No 313
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=60.45 E-value=5.3 Score=20.64 Aligned_cols=16 Identities=56% Similarity=0.596 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8887489999999985
Q gi|254780401|r 56 GTGKTPTALAIAKAVI 71 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~ 71 (338)
|||||-.+.=||+.|.
T Consensus 46 GtGKTS~ARIfAKaLN 61 (363)
T TIGR02397 46 GTGKTSIARIFAKALN 61 (363)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9763558999999865
No 314
>KOG0989 consensus
Probab=60.44 E-value=5.1 Score=20.77 Aligned_cols=23 Identities=57% Similarity=0.667 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 78887489999999985247315
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
-|||||.+...+++.|-.....+
T Consensus 66 pGTGKTStalafar~L~~~~~~~ 88 (346)
T KOG0989 66 PGTGKTSTALAFARALNCEQLFP 88 (346)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99867689999999855742355
No 315
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=60.39 E-value=9.4 Score=18.90 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=25.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=.|+|||-+.+-|++.|+++|.++++..
T Consensus 11 ~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 11 ETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8886288999999999997073269984
No 316
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=60.38 E-value=9.7 Score=18.78 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=27.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
++..|.- |||||=+++-++--..+.|.++..+|
T Consensus 27 ~li~G~~---GtGKsi~~~~~~~~~l~~g~~~~yis 59 (230)
T PRK08533 27 ILIEGDE---STGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9998689---98789999999999987898699999
No 317
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=60.30 E-value=13 Score=17.99 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=7.3
Q ss_pred ECCHHHHHHHHHHHHH
Q ss_conf 5787899999999999
Q gi|254780401|r 312 FENPDDLTNLVEMTVV 327 (338)
Q Consensus 312 ~~~~~~l~~~l~~~i~ 327 (338)
+=.+..+.+.+.+.+.
T Consensus 202 iCGP~~m~~~~~~~L~ 217 (231)
T cd06191 202 ICGPAGMMDAVETALK 217 (231)
T ss_pred EECCHHHHHHHHHHHH
T ss_conf 9399999999999999
No 318
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=60.29 E-value=9.9 Score=18.73 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=24.0
Q ss_pred EEEEECCCCH------HHHHHHHHHHCCCCCC------CCCCCCCCCCCHHH----HHHHHHH---HHHCCCEEEEC
Q ss_conf 8987415535------7899988740100001------22143323489899----9999997---56479879985
Q gi|254780401|r 225 VLAFSGIADT------EKFFTTVRQLGALIEQ------CYSFGDHAHLSDKK----IAYLLDQ---AQQKGLILVTT 282 (338)
Q Consensus 225 v~afsGIa~P------~~F~~~L~~~g~~i~~------~~~fpDHh~ys~~d----l~~i~~~---a~~~~~~iiTT 282 (338)
++-|+|..-. ..+++.|.+.|....- .+.+.-.--|+..| +.++.+. ....+...||+
T Consensus 445 ~iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LDGd~lR~gl~~dlgf~~~dR~enirR~~eva~l~~~aG~i~i~a 521 (613)
T PRK05506 445 TVWFTGLSGSGKSTIANLVERRLHALGRHTYVLDGDNVRHGLNRDLGFTDADRVENIRRVAEVARLMADAGLIVLVS 521 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99997789897479999999999977998799880898741045779798999999999999999998689889997
No 319
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=60.18 E-value=11 Score=18.30 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=32.5
Q ss_pred CCCCEEEECCCCCHHHHCCHHHHHHHC-CCCCCCCCHHHHHHHHCCCCCCEEEEC------CCCCCC----CCCCEEEEE
Q ss_conf 777558714567887704212332205-763465201225664102457479971------832234----412306999
Q gi|254780401|r 88 SRISFRVDLEKHSAYDVGDEPLLLARR-AVTIVTSDRKIGVQMLLQEGVDIIIMD------DGFHSA----DLQADFSLI 156 (338)
Q Consensus 88 ~~~~~~v~~~~~~~~~vGDEp~lla~~-~pv~V~~~R~~~~~~~~~~~~diiIlD------DGfQh~----~l~rdl~Iv 156 (338)
+|+.+.++. +|...--|=+. +|... ..|.+..+=..+...+.+..+|++||| ||++=. +..++..|+
T Consensus 2 ~k~tIliVD-Dh~~vr~gl~~-lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vi 79 (202)
T PRK09390 2 TKGVVHVVD-DDEAMRDSLAF-LLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEC-CCHHHHHHHHH-HHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 999799984-99999999999-9998899899989999999997657979998779999989607999987228998679
Q ss_pred EECC
Q ss_conf 9618
Q gi|254780401|r 157 VVNS 160 (338)
Q Consensus 157 l~d~ 160 (338)
++.+
T Consensus 80 vlT~ 83 (202)
T PRK09390 80 VMTG 83 (202)
T ss_pred EEEE
T ss_conf 9974
No 320
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=59.86 E-value=13 Score=17.98 Aligned_cols=16 Identities=0% Similarity=-0.085 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 7878999999999999
Q gi|254780401|r 313 ENPDDLTNLVEMTVVS 328 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~ 328 (338)
-.+..+.+.+.+.+.+
T Consensus 207 CGPp~M~~~~~~~L~~ 222 (241)
T cd06195 207 CGNPQMIDDTQELLKE 222 (241)
T ss_pred ECCHHHHHHHHHHHHH
T ss_conf 2999999999999998
No 321
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=59.69 E-value=13 Score=17.83 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=10.1
Q ss_pred ECCHHHHHHHHHHHHHHH
Q ss_conf 578789999999999998
Q gi|254780401|r 312 FENPDDLTNLVEMTVVSF 329 (338)
Q Consensus 312 ~~~~~~l~~~l~~~i~~~ 329 (338)
+=.+..+.+.+.+.+.+.
T Consensus 214 ~CGP~~mi~~~~~~L~~~ 231 (247)
T cd06184 214 LCGPVPFMQAVREGLKAL 231 (247)
T ss_pred EECCHHHHHHHHHHHHHC
T ss_conf 939899999999999976
No 322
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.67 E-value=11 Score=18.44 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=27.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.|+|+| +|=-|||.+|..++..|++.|+++.+.
T Consensus 104 ~~~iIaV----TGTnGKTTTt~li~~iL~~~g~~~~~g 137 (438)
T PRK03806 104 QAPIVAI----TGSNGKSTVTTLVGEMAKAAGVNVGVG 137 (438)
T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9988999----489984899999999998659975677
No 323
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=59.56 E-value=7.4 Score=19.63 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCCCCCCCEE--EECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6433889889--98230007888748999999998524
Q gi|254780401|r 38 QRLHAPIPVI--CVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 38 ~~~~~~~pVI--~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
+-+.+|+|.- .+|=+---|+|||..+--|+..++..
T Consensus 90 kL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PN 127 (591)
T COG1245 90 KLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPN 127 (591)
T ss_pred EEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 78457878888479987689765788999974760778
No 324
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=59.48 E-value=14 Score=17.60 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=43.1
Q ss_pred ECCCCHHHHHHHHHHHCCCCC--CCCCCCCCCC---CCHHHHHHHHHHHHHCCC-EEEECHHHHHHCCCCCCCCHHHHCC
Q ss_conf 415535789998874010000--1221433234---898999999997564798-7998546634382333441112205
Q gi|254780401|r 229 SGIADTEKFFTTVRQLGALIE--QCYSFGDHAH---LSDKKIAYLLDQAQQKGL-ILVTTAKDAMRLHKRPGRAEEIFAK 302 (338)
Q Consensus 229 sGIa~P~~F~~~L~~~g~~i~--~~~~fpDHh~---ys~~dl~~i~~~a~~~~~-~iiTTEKD~VKL~~~~~~~~~l~~~ 302 (338)
|==|||++....|+.+.-.-. +...+-|=.. ++++.=+++.+.+.+.+. .++|--+++-.+... +..
T Consensus 828 sYNANP~Sm~aAl~~L~~~~~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG~~~~~~~~~------~~~- 900 (953)
T PRK11929 828 TYNANPDSMRAAIDVLARLPGPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITLGEASRDAAHA------FGK- 900 (953)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH------CCC-
T ss_conf 8488899999999998528799869998485002457899999999999975999999986579999865------684-
Q ss_pred EEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 178876989578789999999999
Q gi|254780401|r 303 SMVIEVDIVFENPDDLTNLVEMTV 326 (338)
Q Consensus 303 ~~~l~i~~~~~~~~~l~~~l~~~i 326 (338)
.-...+++.+++.+.|++.+
T Consensus 901 ----~~~~~~~~~~~l~~~L~~~l 920 (953)
T PRK11929 901 ----AARACFASVDEIIAALRGLL 920 (953)
T ss_pred ----CCEEEECCHHHHHHHHHHHC
T ss_conf ----65788399999999998558
No 325
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=59.35 E-value=9.6 Score=18.82 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=27.9
Q ss_pred EEECCC-CCCHHHHHHHHHHHHCCC-CEEEEEECCCCCC
Q ss_conf 000788-874899999999852473-1598760457877
Q gi|254780401|r 52 FVMGGT-GKTPTALAIAKAVIDKNL-KPGFLSRGYGRKS 88 (338)
Q Consensus 52 itvGGt-GKTP~v~~l~~~l~~~g~-~~~ilsRGYg~~~ 88 (338)
+++||| |-.-..++|++.|.++|+ .+..+..+++...
T Consensus 5 l~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~ 43 (357)
T COG0707 5 LTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEA 43 (357)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 996677665779999999999609717999446634443
No 326
>pfam00365 PFK Phosphofructokinase.
Probab=59.31 E-value=14 Score=17.58 Aligned_cols=202 Identities=13% Similarity=0.199 Sum_probs=95.3
Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCC-CCCCCH
Q ss_conf 823000788--874899999999852473159876045787777558714567--887704212332205763-465201
Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVT-IVTSDR 123 (338)
Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv-~V~~~R 123 (338)
||=||.||- |=-..+..+++.....|+++--+-.||.|-..+.+...+..+ .....|- ..|-..+.+- -....+
T Consensus 3 I~IltsGG~~pG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gG-t~LgtsR~~~~~~~~~~ 81 (279)
T pfam00365 3 IGVLTSGGDAPGMNAAIRAVVRSAIAEGLEVYGIYEGYAGLVAGNIKQLDWESVSDIIQRGG-TFIGSARCPEFREREGR 81 (279)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEECCHHHHHHHHHCCC-CCCCCCCCCCCCCHHHH
T ss_conf 99990788866789999999999987799999990567788269824098888988996598-41246677755456679
Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCC-CC--CCEEEEEEECCCCCCCCCC-----CCCCHHHHHCCHHHHHHHHHHHHC
Q ss_conf 22566410245747997---1832234-41--2306999961843356655-----376136521002556651454420
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSA-DL--QADFSLIVVNSHRGLGNGL-----VFPAGPLRVPLSRQLSYVDAILYV 192 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~-~l--~rdl~Ivl~d~~~~~gn~~-----llPaGpLREp~~~~l~rad~vi~~ 192 (338)
.++++.+.+.+.|.++. ||.|+.- .| ..++.++.+... .-|+. .+=. ..+++.+--.+
T Consensus 82 ~~~~~~l~~~~Id~li~IGGd~S~~~a~~L~~~~~i~vigIPkT--IDNDl~~td~s~Gf-------~TA~~~~~~~i-- 150 (279)
T pfam00365 82 LKAAENLKKHGIDALVVIGGDGSYTGADLLTSEHGFNCVGLPGT--IDNDICGTDYTIGF-------DTALNTIVEAI-- 150 (279)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCCCH-------HHHHHHHHHHH--
T ss_conf 99999999848997999669568999999999729978982034--56898777678788-------99999999999--
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44124577631350111222201321116863898741553578999887401000012214332348989999999975
Q gi|254780401|r 193 GNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQA 272 (338)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a 272 (338)
-.+.... -..+++..+=-.|+...+...--.+... .+....|. ..|+.+++....+..
T Consensus 151 -----------------~~l~~ta---~s~~rv~ivEvMGR~~G~LAl~~~la~g-ad~iliPE-~~~~~~~~~~~i~~~ 208 (279)
T pfam00365 151 -----------------DRIRDTA---SSHQRTFVVEVMGRHCGDLALVAGIAGG-ADYIFIPE-APFWEEELCNRLKRG 208 (279)
T ss_pred -----------------HHHHHHH---HCCCCEEEEEECCCCHHHHHHHHHHHCC-CCEEEECC-CCCCHHHHHHHHHHH
T ss_conf -----------------9999986---4268649999799786899999988528-99999679-887589999999999
Q ss_pred HHC--C-CEEEECHH
Q ss_conf 647--9-87998546
Q gi|254780401|r 273 QQK--G-LILVTTAK 284 (338)
Q Consensus 273 ~~~--~-~~iiTTEK 284 (338)
.+. + ..+|..|-
T Consensus 209 ~~~~k~~~ivvvsEG 223 (279)
T pfam00365 209 RERGKRHNIVIVAEG 223 (279)
T ss_pred HHCCCCEEEEEEECC
T ss_conf 980898059999789
No 327
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=59.13 E-value=6 Score=20.27 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=23.4
Q ss_pred CEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 30007--88874899999999852473159876045
Q gi|254780401|r 51 GFVMG--GTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 51 NitvG--GtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|+.+| |+|||-++.+++--| |-++..+.||-
T Consensus 24 N~IiG~NGsGKSsIl~AI~lgL---Ggk~~~~~Rg~ 56 (198)
T cd03276 24 NFIVGNNGSGKSAILTALTIGL---GGKASDTNRGS 56 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCHH
T ss_conf 8998899998899999999863---88813365313
No 328
>PRK05480 uridine kinase; Provisional
Probab=59.07 E-value=11 Score=18.39 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=21.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 007888748999999998524731598760
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=-.|+|||-++..|++.|.+. ++.+||-
T Consensus 13 G~SgSGKTT~a~~L~~~l~~~--~v~vi~~ 40 (209)
T PRK05480 13 GGSGSGKTTVASTIYEELGDE--SIAVISQ 40 (209)
T ss_pred CCCCCCHHHHHHHHHHHCCCC--CEEEEEC
T ss_conf 999778999999999980868--7599955
No 329
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=59.01 E-value=8.6 Score=19.17 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 8887489999999985247315987604578
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|+|||-+...+.+. ..|.+++||--=+|.
T Consensus 10 GaGKTTll~~lL~~--~~~~~~avIvNEfG~ 38 (158)
T cd03112 10 GAGKTTLLNHILTE--QHGRKIAVIENEFGE 38 (158)
T ss_pred CCCHHHHHHHHHHC--CCCCCEEEEEECCCC
T ss_conf 89999999999847--889977999707655
No 330
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=58.70 E-value=6.6 Score=19.99 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.0
Q ss_pred ECCCCCCHHHHHHHHHHHHC
Q ss_conf 07888748999999998524
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~ 73 (338)
|-|||||-+|....+.|+++
T Consensus 301 VPGTGKTATV~eVIr~L~~~ 320 (650)
T PTZ00112 301 VPGTGKTATVYMVIKELQNK 320 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHH
T ss_conf 99998003699999999999
No 331
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=58.69 E-value=10 Score=18.70 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 7888748999999998524731598760457877
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
||-||+-++.-|+-.|.++|++|..+ |+--|.
T Consensus 13 GGIGKSTtssNlsAAlA~~G~rVl~I--GCDPK~ 44 (293)
T PRK13234 13 GGIGKSTTSQNTLAALVEMGQKILIV--GCDPKA 44 (293)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCCC
T ss_conf 84458778999999999779969997--489831
No 332
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=58.60 E-value=11 Score=18.35 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=27.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-.++..|+- |||||-++..++-...++|.++.++|
T Consensus 33 ~~~li~G~~---G~GKt~~~~~f~~~~~~~g~~~~~~~ 67 (241)
T PRK06067 33 SLILIEGEN---DTGKSVLSQQFVWGALNQGKRGLAIT 67 (241)
T ss_pred EEEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 089998079---98879999999999986798299999
No 333
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.44 E-value=15 Score=17.48 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEE-
Q ss_conf 5789998874010000122143323489899999999756479879985466343823334411122051788769895-
Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVF- 312 (338)
Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~- 312 (338)
|-+.-+.|...|+ ......||-.+...|++ |...|..++..|+|-.+|++-+....... +..+|---.++.-
T Consensus 10 p~rlad~l~~~g~---e~~h~r~lg~~da~D~E-I~a~A~~~~~iivTkDsDF~~la~~~G~P---pki~wLr~gNvs~~ 82 (113)
T COG4634 10 PPRLADWLPMAGI---EAVHWRDLGLRDATDIE-IWAYARRNNRIIVTKDSDFADLALTLGSP---PKIVWLRCGNVSTR 82 (113)
T ss_pred CHHHHHHHHHCCC---CEEEECCCCCCCCCCHH-HHHHHHHCCCEEEECCCCHHHHHHHCCCC---CEEEEEEECCCCHH
T ss_conf 8489998654355---10345145767885599-99998756918997173289999970899---85899983687879
Q ss_pred CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 787899999999999986313
Q gi|254780401|r 313 ENPDDLTNLVEMTVVSFANSN 333 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~~~n~~ 333 (338)
+-+..+.+-+++....+.+.+
T Consensus 83 ~ie~l~~~~l~~~~e~le~g~ 103 (113)
T COG4634 83 EIEILIRSVLRAIGEELESGA 103 (113)
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999983897
No 334
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=58.39 E-value=5.4 Score=20.60 Aligned_cols=24 Identities=42% Similarity=0.256 Sum_probs=17.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-++..+|+.+. .....++
T Consensus 7 pGtGKT~~a~~la~~~~---~~~~~v~ 30 (131)
T pfam00004 7 PGTGKTTLAKAVAKELG---APFIEIS 30 (131)
T ss_pred CCCCHHHHHHHHHHHHC---CCCEECC
T ss_conf 99999999999999978---9853324
No 335
>PRK13236 nitrogenase reductase; Reviewed
Probab=58.29 E-value=11 Score=18.52 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 788874899999999852473159876045787
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
||-||+-++.-|+-.|.++|++|.++ |+--|
T Consensus 15 GGIGKSTts~NlsAAlA~~G~rVl~I--GCDPK 45 (295)
T PRK13236 15 GGIGKSTTSQNTLAAMAEMGQRILIV--GCDPK 45 (295)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCC
T ss_conf 84347578999999999779969997--88980
No 336
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=58.26 E-value=9.4 Score=18.91 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-+-|||=++.+|++.|+++|++++..
T Consensus 12 TdVGKT~vsaaL~~~l~~~G~~v~~~ 37 (231)
T PRK12374 12 TSVGKTVVSRALLQALASQGKSVAGY 37 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99539999999999999789948888
No 337
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.22 E-value=11 Score=18.50 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=26.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 889982300078887489999999985247315987
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+||+| +|-.|||-+|.+++..|+..|+++.+.
T Consensus 123 ~iIaV----TGTnGKTTTt~li~~iL~~~g~~~~~~ 154 (501)
T PRK02006 123 KVLAI----TGTNGKTTTTSLTGLLCERAGKKVAVA 154 (501)
T ss_pred CEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 48999----389966879999999999769974652
No 338
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=58.19 E-value=7 Score=19.78 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 89982300078887489999999985247315
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
++..|. =|||||-++.++++.+++.-.++
T Consensus 45 ~~iyG~---~GTGKT~~~~~v~~~l~~~~~~~ 73 (366)
T COG1474 45 IIIYGP---TGTGKTATVKFVMEELEESSANV 73 (366)
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 799889---99873289999999997331567
No 339
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=58.10 E-value=7 Score=19.80 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
...---|| -|||||.++.-.++.|...|| +-||
T Consensus 59 lhm~ftG~---PGtGkttva~~m~~~l~~lGy----~r~G 91 (284)
T TIGR02880 59 LHMSFTGN---PGTGKTTVALRMAQILHRLGY----VRKG 91 (284)
T ss_pred EEEEECCC---CCCCHHHHHHHHHHHHHHCCC----CCCC
T ss_conf 26775168---987248999999999987154----0036
No 340
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=57.93 E-value=7.3 Score=19.68 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=27.1
Q ss_pred ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 82300078887489999999985247315987604
Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|-.+..||+. -.+..|++.|.++|+.|.|+|++
T Consensus 4 i~sl~~GGaE--~~~~~La~~L~~~Gh~V~vi~~~ 36 (355)
T cd03819 4 LPALESGGVE--RGTLELARALVERGHRSLVASAG 36 (355)
T ss_pred CCCCCCCHHH--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 8999994179--99999999999879989999689
No 341
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=57.84 E-value=14 Score=17.70 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=22.2
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 64338898899823000788874899999999852
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
.-.+..-|+.-||- -|||||.++.+||..|..
T Consensus 459 ~~Iq~nep~LLVGe---TGtGKTT~IQ~La~~l~~ 490 (4600)
T COG5271 459 WNIQNNEPTLLVGE---TGTGKTTMIQYLALKLHF 490 (4600)
T ss_pred HHHCCCCCEEEEEC---CCCCHHHHHHHHHHHHHH
T ss_conf 77416984588714---887654699999998644
No 342
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=57.78 E-value=5.5 Score=20.53 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
=|||||-++..||+.| |++ -+|=|-
T Consensus 9 PGSGktTvA~~lA~~L---sl~--~iSaG~ 33 (173)
T TIGR02173 9 PGSGKTTVAKILAEKL---SLK--LISAGD 33 (173)
T ss_pred CCCCHHHHHHHHHHHC---CCC--EECCCH
T ss_conf 9686478999999863---983--120200
No 343
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=57.54 E-value=10 Score=18.58 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=10.2
Q ss_pred ECCCCCCHHHHHHHH
Q ss_conf 078887489999999
Q gi|254780401|r 54 MGGTGKTPTALAIAK 68 (338)
Q Consensus 54 vGGtGKTP~v~~l~~ 68 (338)
--|+|||-+.-.|+.
T Consensus 41 pnGaGKSTLl~~l~g 55 (192)
T cd03232 41 ESGAGKTTLLDVLAG 55 (192)
T ss_pred CCCCCHHHHHHHHHC
T ss_conf 999988999999837
No 344
>pfam02689 Herpes_Helicase Helicase. This family consists of Helicases from the Herpes viruses. Helicases are responsible for the unwinding of DNA and are essential for replication and completion of the viral life cycle.
Probab=57.45 E-value=15 Score=17.37 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=27.0
Q ss_pred CCCCCCCCCC------CC-HHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCC-EEEECCEE
Q ss_conf 9887332248------89-9999999999999999999974-0464338898-89982300
Q gi|254780401|r 2 MKSPLFWWKA------RG-FYSFFLYPISWIYSFISSKLMK-RGQRLHAPIP-VICVGGFV 53 (338)
Q Consensus 2 ~~~p~fw~~~------~~-~~~~lL~Pls~iy~~~~~~~~~-~~~~~~~~~p-VI~VGNit 53 (338)
+..|.||-.+ .| +.+.+|.-.-+.|++.+.+..- .++..+ +| |+|||.-|
T Consensus 187 ~~~p~l~~SNIIVIDEAG~L~rhiLtaVVf~yWf~Na~~~TplYr~g~--vPcIVCVGSPT 245 (801)
T pfam02689 187 GSLPALWTSNVIVIDEAGTLGRHILTAVVFCYWFYNAWLKTPLYRNGA--VPCIVCVGSPT 245 (801)
T ss_pred CCCCCCEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC--CCEEEEECCCC
T ss_conf 786210221479996554178767787899999887760786886799--84699968985
No 345
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=57.43 E-value=15 Score=17.37 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+++|+||++= -.+++.|.+.|..+.+++|--
T Consensus 3 lVtGATG~iG--~~v~~~L~~~g~~v~~~~R~~ 33 (285)
T TIGR03649 3 LLTGGTGKTA--SRIARLLQAASVPFLVASRSS 33 (285)
T ss_pred EEECCCCHHH--HHHHHHHHHCCCCEEEEECCH
T ss_conf 9998998189--999999986899789995885
No 346
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=57.36 E-value=11 Score=18.44 Aligned_cols=36 Identities=39% Similarity=0.421 Sum_probs=24.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECC
Q ss_conf 899823000788874899999999-852473159876045
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKA-VIDKNLKPGFLSRGY 84 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~-l~~~g~~~~ilsRGY 84 (338)
|++.|- -|||||=++.+.|-. +++..++=.|+.|--
T Consensus 22 v~~~Gp---AGtGKT~la~~~al~~l~~~~~~kiii~Rp~ 58 (205)
T pfam02562 22 VFGIGP---AGTGKTYLAVAAAVDALKDGKVKRIILTRPA 58 (205)
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 799899---9860999999999999971894379997577
No 347
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=57.31 E-value=6.7 Score=19.92 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=33.9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC------CC------CCCCCCCCEEEEEEECC
Q ss_conf 63465201225664102457479971------83------22344123069999618
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD------DG------FHSADLQADFSLIVVNS 160 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD------DG------fQh~~l~rdl~Ivl~d~ 160 (338)
-|-|+.|=.+|++.+.+..||++||| || +.|....+-=.|++..|
T Consensus 30 VvG~A~nG~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi~LsA 86 (270)
T TIGR02875 30 VVGVAHNGVDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVIMLSA 86 (270)
T ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 997414768999999608998999515043000579999988988744895888522
No 348
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=57.21 E-value=9.2 Score=18.97 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=22.6
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 998230007888748999999998524731598
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
++||=---=|||||-+.-.+.+.|++..-.+.+
T Consensus 21 ~vIgl~G~WGsGKTs~l~~~~~~L~~~~~~~~~ 53 (301)
T pfam07693 21 FVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHI 53 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 799998989999999999999998613688269
No 349
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=57.11 E-value=3.2 Score=22.17 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHH-HHHHHC
Q ss_conf 788874899999999852473159876045787777558714567887704212332205--76346520122-566410
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKI-GVQMLL 131 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~-~~~~~~ 131 (338)
=|+|||-+...|+..+....=+ |.-.|.-=+.-.+-. -......+..|+.++... -.+.-+..|.+ ++..+.
T Consensus 37 sGsGKSTLl~ll~gl~~p~~G~--i~i~g~~~~~~~~~~---~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQRvalARal 111 (173)
T cd03246 37 SGSGKSTLARLILGLLRPTSGR--VRLDGADISQWDPNE---LGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLARAL 111 (173)
T ss_pred CCCHHHHHHHHHHCCCCCCCCE--EEECCEECCCCCHHH---HHCCEEEEECCCEECCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 9980999999996666679998--999999933289989---84208999088836777589976769999999999998
Q ss_pred CCCCCEEEECCCCCCC
Q ss_conf 2457479971832234
Q gi|254780401|r 132 QEGVDIIIMDDGFHSA 147 (338)
Q Consensus 132 ~~~~diiIlDDGfQh~ 147 (338)
-.+++++|||+..-+.
T Consensus 112 ~~~p~ililDEpts~L 127 (173)
T cd03246 112 YGNPRILVLDEPNSHL 127 (173)
T ss_pred HCCCCEEEEECCCCCC
T ss_conf 2799999996876689
No 350
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=57.01 E-value=11 Score=18.41 Aligned_cols=28 Identities=29% Similarity=0.200 Sum_probs=23.5
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0078887489999999985247315987
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
++|=-|||-++.+|+..|++.|.+++..
T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~ 28 (188)
T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTG 28 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9375868999999999998389989983
No 351
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=56.94 E-value=16 Score=17.31 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 787899999999999
Q gi|254780401|r 313 ENPDDLTNLVEMTVV 327 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~ 327 (338)
=.+..+.+.+.+.+.
T Consensus 210 CGP~~m~~av~~~L~ 224 (238)
T cd06211 210 CGPPPMIDACIKTLM 224 (238)
T ss_pred ECCHHHHHHHHHHHH
T ss_conf 599999999999999
No 352
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=56.92 E-value=16 Score=17.31 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=9.0
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHH
Q ss_conf 86389874-15535789998874
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQ 243 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~ 243 (338)
.++++++| ||| =..|..+|+.
T Consensus 108 ~~~lvliAgG~G-itP~~sml~~ 129 (241)
T cd06214 108 ARHYVLFAAGSG-ITPVLSILKT 129 (241)
T ss_pred CCEEEEEECCCC-CCHHHHHHHH
T ss_conf 861999956875-1849999999
No 353
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=56.73 E-value=8.4 Score=19.23 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
=|-|||=++.+|++.|+.+|++++..
T Consensus 12 T~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 12 TGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99649999999999999689705987
No 354
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=56.71 E-value=6.7 Score=19.94 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=24.1
Q ss_pred CEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 30007--88874899999999852473159876045
Q gi|254780401|r 51 GFVMG--GTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 51 NitvG--GtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|+.+| ||||+-++-+++=-| |.+|-++.|+=
T Consensus 26 N~IiGpNGSGKSsIv~AI~lgL---GG~p~~lgRa~ 58 (213)
T cd03277 26 NMIIGPNGSGKSSIVCAICLGL---GGKPKLLGRAK 58 (213)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCHHHCCCHH
T ss_conf 7998899887899999999881---89800045265
No 355
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=56.57 E-value=12 Score=18.24 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-|||+|.-- -|+|||-+++.||+.+. .-|||
T Consensus 3 ~~~ii~i~Gp--TasGKs~la~~la~~~~-----~eIIs 34 (304)
T PRK00091 3 KPKLIVLVGP--TASGKTALAIELAKRLN-----GEIIS 34 (304)
T ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHCC-----CEEEE
T ss_conf 9977999898--86589999999999879-----98994
No 356
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=56.22 E-value=11 Score=18.43 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=24.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
++...|. .|+|||=+...+++.+.+.+.++..++
T Consensus 40 ~l~i~G~---~GsGKTHLl~a~~~~~~~~~~~~~yl~ 73 (226)
T TIGR03420 40 FLYLWGE---SGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 6999899---999889999999999862699579952
No 357
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=56.02 E-value=16 Score=17.21 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=15.8
Q ss_pred CEEEEEECCCCHHHH-----HHHHHHHCCCCCCCCCCCCC
Q ss_conf 638987415535789-----99887401000012214332
Q gi|254780401|r 223 KKVLAFSGIADTEKF-----FTTVRQLGALIEQCYSFGDH 257 (338)
Q Consensus 223 k~v~afsGIa~P~~F-----~~~L~~~g~~i~~~~~fpDH 257 (338)
-.++.+.|+-||-|= .+.+++.|+++. +.=-||
T Consensus 537 l~flGlv~~~DPpR~e~~~aI~~l~~aGI~V~--MITGD~ 574 (900)
T PRK10517 537 LILEGYIAFLDPPKETTAPALKALKASGITVK--ILTGDS 574 (900)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCEEE--EECCCC
T ss_conf 47999997307897109999999997799389--989999
No 358
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.02 E-value=15 Score=17.54 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
..|+|+| +|=-|||-++..++..|++.|+++.+.
T Consensus 103 ~~~~IaI----TGTnGKTTTt~li~~iL~~~g~~~~~~ 136 (450)
T PRK01368 103 NLKFIAI----TGTNGKSTTTALISHILNSNGLDYPVA 136 (450)
T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9977999----689997489999999999759962896
No 359
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=55.92 E-value=12 Score=18.21 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 078887489999999985247315987
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
=||-|||-++.=|+-.|. .|+++.++
T Consensus 10 KGGIGKSTt~~NlaaalA-~g~rVl~i 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAYS-SDNSTLVI 35 (264)
T ss_pred CCCCCHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 985478889999999998-79977998
No 360
>KOG0063 consensus
Probab=55.85 E-value=4.4 Score=21.25 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCCCCCCC--EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 64338898--899823000788874899999999852
Q gi|254780401|r 38 QRLHAPIP--VICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 38 ~~~~~~~p--VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
+-.++|+| +=..|++-.-|+||.-..-.|+..++-
T Consensus 90 Klhrlp~prpg~vlglvgtngigkstAlkilagk~kp 126 (592)
T KOG0063 90 KLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKP 126 (592)
T ss_pred EECCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 3424899982000120155763288899998478799
No 361
>PRK08506 replicative DNA helicase; Provisional
Probab=55.80 E-value=13 Score=17.93 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|.|||-+++-+|....+.|..|++.|
T Consensus 202 PsmGKTAfAlniA~~~a~~~~~V~~FS 228 (473)
T PRK08506 202 PSMGKTTLVLNMVLKALNQGKGVAFFS 228 (473)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 998678999999999996599658982
No 362
>PRK10536 hypothetical protein; Provisional
Probab=55.68 E-value=13 Score=17.96 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=26.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHH-HHHHHCCCCEEEEEECC
Q ss_conf 88998230007888748999999-99852473159876045
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIA-KAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~-~~l~~~g~~~~ilsRGY 84 (338)
-|+|+|- -|||||=++.+.| +.|.+..++=.|++|--
T Consensus 76 ivf~~Gp---AGTGKT~lA~a~Al~~l~~~~~~kIIltRP~ 113 (262)
T PRK10536 76 LIFATGE---AGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 3999899---9875899999999999985888689996678
No 363
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=55.67 E-value=16 Score=17.17 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=25.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|++|||| -+=-.|++.|.++|+.+..++|.
T Consensus 2 LVtG~~G--fiGs~l~~~L~~~g~~v~~~~r~ 31 (284)
T pfam04321 2 LVTGANG--QLGRELTRLLAERGVEVVALDRP 31 (284)
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9964899--89999999998689989995486
No 364
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.66 E-value=13 Score=17.90 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=25.0
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0078887489999999985247315987
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
++|=.|||-++..++..|++.|+++.+.
T Consensus 128 VTGTnGKTTTtsli~~iL~~~g~~~~~~ 155 (476)
T PRK00141 128 VTGTNGKTTTTAMLAAMMQAGGFAAVAV 155 (476)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9689967989999999998379972899
No 365
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=55.41 E-value=13 Score=17.86 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=15.6
Q ss_pred CEEEEEECCCCHHHHHH-----HHHHHCCCCCC
Q ss_conf 63898741553578999-----88740100001
Q gi|254780401|r 223 KKVLAFSGIADTEKFFT-----TVRQLGALIEQ 250 (338)
Q Consensus 223 k~v~afsGIa~P~~F~~-----~L~~~g~~i~~ 250 (338)
+..+++|| |..+.+ .|+++|+.-.+
T Consensus 270 ~~~vlvCG---PPpMi~~a~~~~L~~LGy~~e~ 299 (303)
T PTZ00319 270 KVMALMCG---PPPMLQMAVKPNLERIGYTADN 299 (303)
T ss_pred CEEEEEEC---CHHHHHHHHHHHHHHCCCCHHH
T ss_conf 76999939---8499999999999983998899
No 366
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=55.07 E-value=17 Score=17.15 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=29.3
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 99823000788874899999999852473159876045
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
..|.++..||+.+ .+..|++.|.++|+.|.|++.+-
T Consensus 4 ~vi~~l~~GG~e~--~~~~la~~L~~~G~~V~v~~~~~ 39 (360)
T cd04951 4 YVITGLGLGGAEK--QVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred EEECCCCCCCHHH--HHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9969999813799--99999999997699899998179
No 367
>PRK08118 topology modulation protein; Reviewed
Probab=55.05 E-value=11 Score=18.51 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=16.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8998230007888748999999998
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
|..||+ .|+|||-++..|++.+
T Consensus 4 I~IiG~---~GsGKSTlAr~L~~~~ 25 (167)
T PRK08118 4 IILIGS---GGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECC---CCCCHHHHHHHHHHHH
T ss_conf 999889---9987999999999988
No 368
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=55.01 E-value=17 Score=17.10 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCCCCCEEEECCEEE----C----------------CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 338898899823000----7----------------8887489999999985247315987
Q gi|254780401|r 40 LHAPIPVICVGGFVM----G----------------GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 40 ~~~~~pVI~VGNitv----G----------------GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
...++++|+-|.++. | +||||-++..++...+++|..++.+
T Consensus 26 ~~~~~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~i 86 (322)
T pfam00154 26 TVEDVEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFI 86 (322)
T ss_pred CCCCCCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7777544615808999987589977870899988987778999999999997349938998
No 369
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=54.92 E-value=5.2 Score=20.70 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=21.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 899823000788874899999999852473159876045
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|+.+|-- |||||-++..+|+.+....+...-++.++
T Consensus 2 vll~Gp~---G~GKT~la~~la~~l~~~~~~~i~~~~~~ 37 (139)
T pfam07728 2 VLLVGPP---GTGKSELAERLAAALSNRPVFYVQLTRDT 37 (139)
T ss_pred EEEECCC---CCHHHHHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 8999899---75699999999998079831112146556
No 370
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=54.47 E-value=16 Score=17.22 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=10.6
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHH
Q ss_conf 86389874-15535789998874
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQ 243 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~ 243 (338)
.+++++++ |+| =..+..+|+.
T Consensus 204 ~rplvlIAgGtG-iaPi~Sml~~ 225 (337)
T PRK07609 204 DKPIVLLASGTG-FAPIKSIVEH 225 (337)
T ss_pred CCCEEEEECCCC-HHHHHHHHHH
T ss_conf 997899965615-6789999999
No 371
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=54.37 E-value=11 Score=18.31 Aligned_cols=214 Identities=14% Similarity=0.173 Sum_probs=105.5
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHHC-CCCC-----C
Q ss_conf 998230007888748999999998524731598760457877775587145678877042123-32205-7634-----6
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLARR-AVTI-----V 119 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~~-~pv~-----V 119 (338)
..-|-. |+|||=++..=+=...+.||++|..- |..+- |++==|+.. +++.. ..|. +
T Consensus 332 LlQGDV---GSGKT~VA~la~l~~i~~GYQ~ALMA---------PTEiL-----A~QHy~~~~~~l~p~~~~vaLLTGs~ 394 (721)
T TIGR00643 332 LLQGDV---GSGKTLVAALAMLAAIESGYQVALMA---------PTEIL-----AEQHYDSLRNLLAPLGIEVALLTGSL 394 (721)
T ss_pred CCCCCC---CCHHHHHHHHHHHHHHHCCCEEEEEC---------CHHHH-----HHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 211010---66389999999999984698099917---------76899-----99999999996235485788861566
Q ss_pred CCCHHHHHHHHCCC-CCCEEEECCC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHH----HHHHHHHHCC
Q ss_conf 52012256641024-5747997183-2234412306999961843356655376136521002556----6514544204
Q gi|254780401|r 120 TSDRKIGVQMLLQE-GVDIIIMDDG-FHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQL----SYVDAILYVG 193 (338)
Q Consensus 120 ~~~R~~~~~~~~~~-~~diiIlDDG-fQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l----~rad~vi~~~ 193 (338)
-+.+++.....+.. .+++||==-+ ||.--=..+|-+|+||-++.||=.+ ..-|||--. +. ..-|.++.|-
T Consensus 395 k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef~~L~lVIiDEQHRFGV~Q---R~~L~~KG~-~~~~~G~~PH~L~MtA 470 (721)
T TIGR00643 395 KGKQRKELLETIASGEIHLVVGTHALIQEKVEFKRLGLVIIDEQHRFGVEQ---RKKLREKGQ-EGSMIGFAPHVLVMTA 470 (721)
T ss_pred CHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCEEEEECCCCCHHHH---HHHHHHHHH-CCCCCCCCCCEEEEEC
T ss_conf 787899999998639520573313554521443147748993233560789---999998622-0688677777646637
Q ss_pred CCH--H------------HHHHHC--CCCHHHHHHHHCCC------------CCC-CCCEEEEEE-CCCCHHHH-HH-HH
Q ss_conf 412--4------------577631--35011122220132------------111-686389874-15535789-99-88
Q gi|254780401|r 194 NKK--N------------VISSIK--NKSVYFAKLKPRLT------------FDL-SGKKVLAFS-GIADTEKF-FT-TV 241 (338)
Q Consensus 194 ~~~--~------------~~~~~~--~~~i~~~~~~~~~~------------~~l-~~k~v~afs-GIa~P~~F-~~-~L 241 (338)
.|= . .+..++ .+||...-++.... .++ +|.++..+| -|-..+.+ -- ..
T Consensus 471 TPIPRTLALt~yGDld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A 550 (721)
T TIGR00643 471 TPIPRTLALTVYGDLDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAA 550 (721)
T ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH
T ss_conf 88147899776500003343168545933899888427887756899999999983289089996440320047168999
Q ss_pred HHHCCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHCCC-EEEEC
Q ss_conf 740100001221433------234898999999997564798-79985
Q gi|254780401|r 242 RQLGALIEQCYSFGD------HAHLSDKKIAYLLDQAQQKGL-ILVTT 282 (338)
Q Consensus 242 ~~~g~~i~~~~~fpD------Hh~ys~~dl~~i~~~a~~~~~-~iiTT 282 (338)
..+ ++......+|+ |-+-+++|=+.+.+..++... .||.|
T Consensus 551 ~~~-~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsT 597 (721)
T TIGR00643 551 EAL-YERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVST 597 (721)
T ss_pred HHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999-99988861221001133068984789999998521583699997
No 372
>PRK06749 replicative DNA helicase; Provisional
Probab=54.33 E-value=14 Score=17.56 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=12.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88874899999999852473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|.|||-+++-+|....+.|..|++.|
T Consensus 196 smGKTa~alnia~~~a~~g~~v~~fS 221 (428)
T PRK06749 196 SMGKTAFALNVGLHAAKSGAAVGLFS 221 (428)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89768999999999996499279983
No 373
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=54.30 E-value=16 Score=17.16 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=11.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 86389874155357899988740
Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQL 244 (338)
Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~ 244 (338)
.+++++++|=--=..+..+|+.+
T Consensus 209 ~~plvlIAgGtGiaPilSmL~~l 231 (340)
T PRK11872 209 ERPLVFVAGGTGLSAFLGMLDNL 231 (340)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH
T ss_conf 88679994486537799999999
No 374
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=54.08 E-value=17 Score=17.00 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=26.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+|||| =+=.+|++.|.++|++|.+++|.-.
T Consensus 4 LVTGgtG--fiG~~l~~~L~~~G~~V~~l~r~~~ 35 (328)
T TIGR03466 4 LVTGATG--FVGSAVVRLLLERGEEVRVLVRPTS 35 (328)
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9986777--9999999999978498999989998
No 375
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=53.77 E-value=8.4 Score=19.22 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 78887489999999985
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI 71 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~ 71 (338)
=|+|||.++..+++.+-
T Consensus 46 pG~GKTt~a~~la~~l~ 62 (318)
T PRK00440 46 PGTGKTTAALALARELY 62 (318)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 99889999999999976
No 376
>PRK09354 recA recombinase A; Provisional
Probab=53.74 E-value=13 Score=17.79 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=33.1
Q ss_pred CCCCCCCCCEEEECCEEE----C----------------CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 464338898899823000----7----------------8887489999999985247315987
Q gi|254780401|r 37 GQRLHAPIPVICVGGFVM----G----------------GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 37 ~~~~~~~~pVI~VGNitv----G----------------GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.....+++||+-|.|+. | ++|||-++...+...++.|-.++.+
T Consensus 31 ~~~~~~~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~i 94 (350)
T PRK09354 31 GDDESMDVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFI 94 (350)
T ss_pred CCCCCCCCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8888877665447717899987589967870899988987779999999999999759947999
No 377
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=53.70 E-value=6.9 Score=19.84 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 888748999999998524
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~ 73 (338)
|||||-++..+|+.+...
T Consensus 9 G~GKT~l~~~lA~~~~~~ 26 (131)
T pfam07726 9 GLAKTLLARTLARSLGLD 26 (131)
T ss_pred CCHHHHHHHHHHHHHCCC
T ss_conf 876999999999995998
No 378
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=53.69 E-value=18 Score=16.96 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 7878999999999999
Q gi|254780401|r 313 ENPDDLTNLVEMTVVS 328 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~ 328 (338)
-.+..+.+.+.+.+..
T Consensus 196 CGP~~m~~~v~~~L~~ 211 (224)
T cd06187 196 CGPPAMVDATVDALLA 211 (224)
T ss_pred ECCHHHHHHHHHHHHH
T ss_conf 2999999999999998
No 379
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=53.54 E-value=18 Score=16.94 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=15.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 388988998230007888748999999998
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
.-|.-||..|- -|+|||-++..+.+.+
T Consensus 10 ~~Pkai~laG~---pGAGKS~~~~~~~~~~ 36 (191)
T pfam06414 10 ERPVAVLLGGQ---PGAGKTELARALLEEL 36 (191)
T ss_pred CCCEEEEEECC---CCCCHHHHHHHHHHHC
T ss_conf 69879999579---9888899999998753
No 380
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=53.47 E-value=7.1 Score=19.74 Aligned_cols=19 Identities=47% Similarity=0.438 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
-|||||.+...+|+.|.-.
T Consensus 48 rGtGKTT~ArilAkaLnC~ 66 (462)
T PRK06305 48 RGTGKTTLARIFAKALNCQ 66 (462)
T ss_pred CCCCHHHHHHHHHHHHCCC
T ss_conf 9859999999999996799
No 381
>KOG0338 consensus
Probab=53.46 E-value=18 Score=16.93 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=64.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHH
Q ss_conf 00078887489999999985247315987604578777755871456788770421233220576----34652012256
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGV 127 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~ 127 (338)
..+-|||||- .|..-.|...=|+|.=++ ...-+++++...-+.+|-+=.-.||+.+. .+||.=-.++-
T Consensus 224 ~A~TGsGKTA--AF~lPiLERLlYrPk~~~------~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~Q 295 (691)
T KOG0338 224 CAATGSGKTA--AFALPILERLLYRPKKVA------ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQ 295 (691)
T ss_pred EECCCCCCHH--HHHHHHHHHHHCCCCCCC------CEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 0114687114--567889999852735676------12699983508999999999999876604024445247457889
Q ss_pred HHHCCCCCCEEEECCC-----C---CCCCCCCEEEEEEECCC
Q ss_conf 6410245747997183-----2---23441230699996184
Q gi|254780401|r 128 QMLLQEGVDIIIMDDG-----F---HSADLQADFSLIVVNSH 161 (338)
Q Consensus 128 ~~~~~~~~diiIlDDG-----f---Qh~~l~rdl~Ivl~d~~ 161 (338)
+.+++..+|++|.--| + +.+.|. +++|++.|--
T Consensus 296 E~~LRs~PDIVIATPGRlIDHlrNs~sf~ld-siEVLvlDEA 336 (691)
T KOG0338 296 EAVLRSRPDIVIATPGRLIDHLRNSPSFNLD-SIEVLVLDEA 336 (691)
T ss_pred HHHHHHCCCEEEECCHHHHHHHCCCCCCCCC-CEEEEEECHH
T ss_conf 9998308987994650588875158876534-3257773338
No 382
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family; InterPro: IPR004473 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the R subunit (HsdR) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity , , , .; GO: 0003677 DNA binding, 0005524 ATP binding, 0009035 Type I site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system.
Probab=53.28 E-value=11 Score=18.48 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=63.0
Q ss_pred EECCCCCCHHHHHHHHHHH--HCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 0078887489999999985--24731598760457877775587145678877042123322057634652012256641
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVI--DKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQML 130 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~--~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~ 130 (338)
.+=|||||=+.+|+|+.+. +....|-|+ ++|| ...-=.+.=+|=--+.. .+.-+.+|......|
T Consensus 330 HtQGSGKtlTm~f~A~k~~~~~~~~~p~v~-----------fvvD-R~eLd~Ql~~~~~~~~~--~~~~~~~~~eS~~~L 395 (813)
T TIGR00348 330 HTQGSGKTLTMLFLARKLRKQKELKNPKVF-----------FVVD-RRELDEQLYKEFSSLKD--LIKDCAERIESIAEL 395 (813)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCEEE-----------EEEE-CHHHHHHHHHHHHHHHH--HCHHHHHCCCCHHHH
T ss_conf 850763788999999999874652698499-----------9972-72778899999987642--010104206788899
Q ss_pred C----CCC-----C-----CE--------------EEECCCCCCC-C--CCCEEEEEEEC-CCC-CCCCCCC-----CCC
Q ss_conf 0----245-----7-----47--------------9971832234-4--12306999961-843-3566553-----761
Q gi|254780401|r 131 L----QEG-----V-----DI--------------IIMDDGFHSA-D--LQADFSLIVVN-SHR-GLGNGLV-----FPA 172 (338)
Q Consensus 131 ~----~~~-----~-----di--------------iIlDDGfQh~-~--l~rdl~Ivl~d-~~~-~~gn~~l-----lPa 172 (338)
. +.+ | -+ ...|+--.+. + +.|.==||++| |.| -+|.-.- +-.
T Consensus 396 k~~L~~~~~sennPn~~k~g~~~t~IqKF~~~~~~k~~e~~~~~~~~i~~~r~~vv~i~DEaHRsqyG~tqklhnGkfqt 475 (813)
T TIGR00348 396 KELLEKNDESENNPNISKRGIIITTIQKFDDELLDKLKEEEEKFPESIIIDRKEVVVIIDEAHRSQYGKTQKLHNGKFQT 475 (813)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 99875177645675535676799960010403445368887438736898716089997067555353411000441358
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCHH
Q ss_conf 3652100255665145442044124
Q gi|254780401|r 173 GPLRVPLSRQLSYVDAILYVGNKKN 197 (338)
Q Consensus 173 GpLREp~~~~l~rad~vi~~~~~~~ 197 (338)
|.=+ .+..+|++|-++=+||.|=.
T Consensus 476 Gla~-~~~~~lknA~f~gFTGTPI~ 499 (813)
T TIGR00348 476 GLAK-ALKKALKNASFFGFTGTPIS 499 (813)
T ss_pred HHHH-HHHHHCHHHHHHCCCCCCCC
T ss_conf 9999-99874311201012247765
No 383
>PRK08084 DNA replication initiation factor; Provisional
Probab=53.20 E-value=15 Score=17.54 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||=+..+++..+.++|.++..++
T Consensus 54 ~G~GKTHLLqA~~~~~~~~~~~~~yl~ 80 (235)
T PRK08084 54 EGAGRSHLLHAACAELSQRGDAVGYVP 80 (235)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 998889999999999970798579987
No 384
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=53.05 E-value=7.3 Score=19.69 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.+--|= -|+|||.++..+|+.|.-.
T Consensus 39 lLf~GP---pG~GKTt~A~~lA~~l~~~ 63 (337)
T PRK12402 39 LVVYGP---SGSGKTAAVRALARELYGD 63 (337)
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 988892---9848999999999996799
No 385
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=53.01 E-value=18 Score=16.88 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 8874899999999852
Q gi|254780401|r 57 TGKTPTALAIAKAVID 72 (338)
Q Consensus 57 tGKTP~v~~l~~~l~~ 72 (338)
||||-+-.=||+.+.+
T Consensus 134 ~GKTTlLRDlaR~~St 149 (282)
T TIGR02858 134 CGKTTLLRDLARILST 149 (282)
T ss_pred CCCCCHHHHHHHHHHC
T ss_conf 8851048889888607
No 386
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=52.88 E-value=18 Score=16.87 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|.+|||| =+=.+|++.|.++|+++..++|.-.
T Consensus 2 LItGasG--fiG~~l~~~L~~~g~~v~~~~r~~~ 33 (235)
T pfam01370 2 LVTGGTG--FIGSALVRRLLQEGYEVIVLGRRRR 33 (235)
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9972897--9999999999978798999989973
No 387
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=52.80 E-value=18 Score=16.86 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=9.9
Q ss_pred HCCHHHHHHHHHHHHCCC
Q ss_conf 100255665145442044
Q gi|254780401|r 177 VPLSRQLSYVDAILYVGN 194 (338)
Q Consensus 177 Ep~~~~l~rad~vi~~~~ 194 (338)
+-+.+++..+|+||++|.
T Consensus 235 ~~l~~a~~~~DlvIttGG 252 (411)
T PRK10680 235 AAFIEADSQADVVISSGG 252 (411)
T ss_pred HHHHHHHHCCCEEEEECC
T ss_conf 999976512898998477
No 388
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=52.76 E-value=18 Score=16.86 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEECC--CCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999999999974046433889889982300078--8874899999999852473159876
Q gi|254780401|r 20 YPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGG--TGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 20 ~Pls~iy~~~~~~~~~~~~~~~~~~pVI~VGNitvGG--tGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|.+.+|.+...+-...---+. .-|.+|| ||| +|||.+.--|..+..+.+++|..+-
T Consensus 76 tpm~~i~Nlhf~lek~rm~n~e-~gp~v~v----vGgsq~Gkts~~~tL~syalk~~~~pl~~n 134 (424)
T COG5623 76 TPMPLIFNLHFFLEKRRMFNYE-KGPTVMV----VGGSQNGKTSFCFTLISYALKLGKKPLFTN 134 (424)
T ss_pred CCHHHHHHHHHHHHHHCCCCCC-CCCEEEE----ECCCCCCCEEHHHHHHHHHHHHCCCCEEEE
T ss_conf 6603455699999763123335-4977999----888767831089999999997167750785
No 389
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=52.53 E-value=9.4 Score=18.89 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=22.6
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0078887489999999985247315987
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.+-|||||=+++.|+..|.+.|+.=-||
T Consensus 192 MATGTGKTrTAiaii~rL~r~~~~KRVL 219 (875)
T COG4096 192 MATGTGKTRTAIAIIDRLIKSGWVKRVL 219 (875)
T ss_pred EECCCCCCEEHHHHHHHHHHCCHHHEEE
T ss_conf 7058885231999999999614143056
No 390
>PRK12678 transcription termination factor Rho; Provisional
Probab=52.52 E-value=14 Score=17.55 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC-------------CCCC
Q ss_conf 788874899999999852473159876045787777558714567887704212332205763-------------4652
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT-------------IVTS 121 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv-------------~V~~ 121 (338)
--+|||-+..-+|+.+....-.+.++- ++|+ .-++||-|=---. ++-| -|+.
T Consensus 420 PkaGKT~ll~~ia~ai~~N~pe~~l~v----------lLiD---ERPEEVTdm~r~v--~geViaStfD~~~~~H~~vae 484 (667)
T PRK12678 420 PKAGKTTILQDIANAITTNNPECHLMV----------VLVD---ERPEEVTDMQRSV--KGEVIASTFDRPPSDHTTVAE 484 (667)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEE----------EECC---CCCHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHH
T ss_conf 978725999999999985699728999----------9737---8851566766404--606998668898888999999
Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 0122566410245747997183223441230699996
Q gi|254780401|r 122 DRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVV 158 (338)
Q Consensus 122 ~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~ 158 (338)
==.+-++.+.+.+-|||||=|.+ .+|.|-+|++.-
T Consensus 485 l~iErAkRlvE~g~DVvillDSi--TRLaRAyN~~~p 519 (667)
T PRK12678 485 LAIERAKRLVELGHDVVVLLDSI--TRLGRAYNLAAP 519 (667)
T ss_pred HHHHHHHHHHHCCCCEEEEECHH--HHHHHHHHCCCC
T ss_conf 99999999875699779996406--688887604469
No 391
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=52.31 E-value=14 Score=17.57 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||=+..-||+.|...|. |++++
T Consensus 30 TGTGKTvTLq~lAE~~S~~GV-Pvf~a 55 (504)
T pfam05872 30 TGTGKTVTLQVLAESFSDAGV-PVFLA 55 (504)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-CEEEE
T ss_conf 778617899999998745499-38871
No 392
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=52.13 E-value=13 Score=17.79 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=28.0
Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 98230007888748999999998524731598760457
Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
.+-++.+||+.+ .+..||+.|.++|+.|.|++.-|.
T Consensus 6 i~p~l~~GGaEr--~v~~la~~L~~~Gh~V~v~t~~~d 41 (392)
T cd03805 6 IHPDLGIGGAER--LVVDAALALQSRGHEVTIYTSHHD 41 (392)
T ss_pred ECCCCCCCHHHH--HHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 869999986999--999999999976993999972688
No 393
>PRK05595 replicative DNA helicase; Provisional
Probab=52.13 E-value=18 Score=16.86 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHH-HCCCCEEEEE
Q ss_conf 8887489999999985-2473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAVI-DKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~-~~g~~~~ils 81 (338)
|.|||-+++-+|.... +.|+.|++.|
T Consensus 211 ~mGKTa~alnia~~~a~~~g~~V~~fS 237 (444)
T PRK05595 211 SMGKTTFALNIAEYAALREGKSVVIFS 237 (444)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 898079999999999986699379995
No 394
>PRK07261 topology modulation protein; Provisional
Probab=52.08 E-value=13 Score=17.93 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8998230007888748999999998
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
|..||+ +|+|||-++..|++.+
T Consensus 3 I~IiG~---sGsGKSTlAr~L~~~~ 24 (171)
T PRK07261 3 IAIIGY---SGSGKSTLARFLGQHY 24 (171)
T ss_pred EEEECC---CCCCHHHHHHHHHHHH
T ss_conf 999889---9986899999999987
No 395
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=51.86 E-value=19 Score=16.76 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=10.4
Q ss_pred ECCHHHHHHHHHHHHHHH
Q ss_conf 578789999999999998
Q gi|254780401|r 312 FENPDDLTNLVEMTVVSF 329 (338)
Q Consensus 312 ~~~~~~l~~~l~~~i~~~ 329 (338)
+=.+..+.+.+.+.+.+.
T Consensus 206 vCGP~~m~~~~~~~l~~~ 223 (236)
T cd06210 206 LCGPPGMVDAAFAAAREA 223 (236)
T ss_pred EECCHHHHHHHHHHHHHC
T ss_conf 959999999999999986
No 396
>KOG0738 consensus
Probab=51.85 E-value=1.2 Score=25.17 Aligned_cols=25 Identities=8% Similarity=0.286 Sum_probs=14.6
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 5747997183223441230699996
Q gi|254780401|r 134 GVDIIIMDDGFHSADLQADFSLIVV 158 (338)
Q Consensus 134 ~~diiIlDDGfQh~~l~rdl~Ivl~ 158 (338)
+.+++|.-||+||-.=...+-.||-
T Consensus 333 KsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738 333 KSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 8899998633444445651699984
No 397
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=51.81 E-value=19 Score=16.76 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88874899999999852473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|=|||-+++--|=.--..|++|++|.
T Consensus 625 GFGKTEVAmRAAFkAV~~GKQVAvLV 650 (1139)
T COG1197 625 GFGKTEVAMRAAFKAVMDGKQVAVLV 650 (1139)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 87599999999999863797499992
No 398
>PHA00547 hypothetical protein
Probab=51.77 E-value=19 Score=16.75 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=19.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 38898899823000788874899999999852
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
..|+.| .+|-+ |||||-+.-||.++.+-
T Consensus 74 ~sPis~-iiG~L---GtGKTlL~TYLsq~~K~ 101 (337)
T PHA00547 74 DNPLSV-IIGKL---GTGKTLLLTYLSQTMKL 101 (337)
T ss_pred HCCCEE-EECCC---CCCHHHHHHHHHHHHHH
T ss_conf 098168-95156---66687999999999977
No 399
>PRK06217 hypothetical protein; Validated
Probab=51.52 E-value=14 Score=17.75 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=17.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|..+|| +|+|||-+...|++.|.
T Consensus 4 I~i~G~---sGsGkSTla~~La~~l~ 26 (185)
T PRK06217 4 IHITGA---SGSGTTTLGAALAEALD 26 (185)
T ss_pred EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 999789---98878999999999759
No 400
>PRK08555 consensus
Probab=51.51 E-value=19 Score=16.72 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=26.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 0007888748999999998524731598760457877775
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRIS 91 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~ 91 (338)
.+..||=-+-.++.+|+....+ .++.-..+||-|.+-+.
T Consensus 118 f~~SGSEAvE~AiklAr~~tgr-~~ii~~~~~yHG~t~g~ 156 (443)
T PRK08555 118 FSNSGTEANEAALKIAKWYTGR-KMFIAFIGAFHGRTQGS 156 (443)
T ss_pred EECCHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCC
T ss_conf 8087788999999998873799-88999958707897211
No 401
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=51.49 E-value=19 Score=16.72 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=24.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+||||..= ..+++.|.++|++|-+++|--
T Consensus 2 lV~GatG~iG--~~vv~~L~~~g~~Vr~l~R~~ 32 (232)
T pfam05368 2 LVFGATGYQG--GSVVRASLKAGHPVRALVRDP 32 (232)
T ss_pred EEECCCHHHH--HHHHHHHHHCCCCEEEEECCC
T ss_conf 9989682899--999999985899389997187
No 402
>pfam00493 MCM MCM2/3/5 family.
Probab=51.44 E-value=19 Score=16.72 Aligned_cols=140 Identities=24% Similarity=0.278 Sum_probs=72.7
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEE-E--ECCCC-CHHHHCCHHHHHHHCC
Q ss_conf 338898899823000788874899999999852473159876045787777558-7--14567-8877042123322057
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFR-V--DLEKH-SAYDVGDEPLLLARRA 115 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~-v--~~~~~-~~~~vGDEp~lla~~~ 115 (338)
.+-.+-|..||.- |||||-+..+.++.....-|. -|=|.+..|..- + ++... -..+.| ++.+|..+
T Consensus 54 ~Rg~ihiLLvGdP---G~gKSqlLk~~~~~~pr~~~t-----sg~~ss~~GLTa~~~~d~~~~~~~leaG--alvlAd~G 123 (327)
T pfam00493 54 LRGDINVLLVGDP---GTAKSQLLKYVAKLAPRAVYT-----SGKGSSAAGLTAAVVRDPDTGEWTLEAG--ALVLADGG 123 (327)
T ss_pred CCCCCEEEEECCC---CCCHHHHHHHHHHHCCCCEEE-----CCCCCCCCCCEEEEEEECCCCCEEEECC--CEEECCCC
T ss_conf 0365118984699---815609999999868870883-----1776656776158998068883698368--47755898
Q ss_pred CCCCCCCH------HHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHH----CCHHHHHH
Q ss_conf 63465201------225664102457479971832234412306999961843356655376136521----00255665
Q gi|254780401|r 116 VTIVTSDR------KIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRV----PLSRQLSY 185 (338)
Q Consensus 116 pv~V~~~R------~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLRE----p~~~~l~r 185 (338)
.+++++=- ..+...+-+++ .|=|---|.. ..|.--..|+- +.+|.+ |+.=|..++-| |.+ .|.|
T Consensus 124 v~cIDEfdk~~~~d~saL~EAMEqq-tVsIaKaGi~-~tL~ar~sVlA--aaNP~~-g~yd~~~~~~~ni~Lp~~-lLsR 197 (327)
T pfam00493 124 VCCIDEFDKMNEEDRVAIHEAMEQQ-TISIAKAGIV-ATLNARCSVLA--AANPIF-GRYDPKKSVAENINLPPP-LLSR 197 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC-EEEEECCCEE-EEECCCCEEEE--EECCCC-CCCCCCCCHHHHCCCCHH-HHCC
T ss_conf 2785005558876799999999868-1776338538-97258717998--527767-737888898885589767-7450
Q ss_pred HHHHHHCCCC
Q ss_conf 1454420441
Q gi|254780401|r 186 VDAILYVGNK 195 (338)
Q Consensus 186 ad~vi~~~~~ 195 (338)
-|++++....
T Consensus 198 FDLif~l~D~ 207 (327)
T pfam00493 198 FDLIFVLLDK 207 (327)
T ss_pred EEEEEEEECC
T ss_conf 1079884068
No 403
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=51.31 E-value=19 Score=16.70 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHH---HHHHHHHHH-HHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8899999999999---999999999-97404643388988998230007888748999999998524
Q gi|254780401|r 11 ARGFYSFFLYPIS---WIYSFISSK-LMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 11 ~~~~~~~lL~Pls---~iy~~~~~~-~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.+.++.||.-+.. -++.++-.. -+....++....-++..|. ||+||.-++.-+...|=..
T Consensus 194 ~p~~~~~L~~~~~~d~el~~ll~~i~g~~l~g~~~~~k~~~l~G~---G~nGKstf~~li~~llG~~ 257 (517)
T COG3378 194 CPKWREWLDRVAGGDPELRNLLQRIIGASLTGRVSEQKLFWLYGP---GGNGKSTFVDLISNLLGRY 257 (517)
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCEEEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 850999998761578889999999976600675340047999768---9987389999999984542
No 404
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=51.30 E-value=18 Score=16.84 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf 888748999999998-52473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAV-IDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l-~~~g~~~~ils 81 (338)
|.|||-+++-+|... .+.|+.|++.|
T Consensus 204 smGKTafalnia~n~A~~~g~~Vl~fS 230 (421)
T TIGR03600 204 SMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 787459999999999986698389992
No 405
>PRK07429 phosphoribulokinase; Provisional
Probab=51.29 E-value=12 Score=18.02 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=23.8
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 998230007888748999999998524731598760
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+.||=----|+|||-++..|++.|-.. ++++|+-
T Consensus 9 ~IIGIAGgSGSGKTTv~r~I~~~fg~~--~VtvI~~ 42 (331)
T PRK07429 9 VIIGVAGDSGCGKSTFLRRLADLFGEE--LVTVICL 42 (331)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEEEC
T ss_conf 899985788778999999999983888--7799947
No 406
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=51.26 E-value=8.1 Score=19.36 Aligned_cols=18 Identities=61% Similarity=0.541 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|||||.++..+|+.|.-
T Consensus 47 rG~GKTs~Ari~akalnc 64 (541)
T PRK05563 47 RGTGKTSTAKIFAKAVNC 64 (541)
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 995899999999999579
No 407
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=51.25 E-value=19 Score=16.70 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=74.4
Q ss_pred EEEECCEEECC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCC------HHHHHHHCCCC
Q ss_conf 89982300078--88748999999998524731598760457877775587145678877042------12332205763
Q gi|254780401|r 46 VICVGGFVMGG--TGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGD------EPLLLARRAVT 117 (338)
Q Consensus 46 VI~VGNitvGG--tGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGD------Ep~lla~~~pv 117 (338)
-.-||=+|+|| .|=-+.+...+++-..+|++|.-+-+||.|-..+.+..- ++.+|++ --+--++..|
T Consensus 389 ~~rIaIlt~GgdapGMNAAiRA~Vr~~~~~G~~v~gI~~Gf~GL~~g~i~~l----~~~~V~g~~~~GGt~LgT~R~~p- 463 (762)
T cd00764 389 NLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVEL----GWIDVGGWTGRGGSELGTKRTLP- 463 (762)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEC----CHHHHCCHHHCCCEEECCCCCCC-
T ss_conf 7069998568896147799999999999889999999258436747986777----84563886646880326578897-
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEE---CCCCCCC-CCCC--------EEEEEEECC---CCCCCCCCCCC
Q ss_conf 46520122566410245747997---1832234-4123--------069999618---43356655376
Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIM---DDGFHSA-DLQA--------DFSLIVVNS---HRGLGNGLVFP 171 (338)
Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIl---DDGfQh~-~l~r--------dl~Ivl~d~---~~~~gn~~llP 171 (338)
.++..+.+..+.+.+.|-+|. |.+|+.- .|.+ .+.+|++.+ ++-.|-++.|=
T Consensus 464 --~~~~~~~a~~l~~~~Id~LivIGG~gs~~ga~~L~~~r~~y~~~~IP~v~IPaTIdNdv~GTd~siG 530 (762)
T cd00764 464 --KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLG 530 (762)
T ss_pred --CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCEE
T ss_conf --3449999999998199889996680799999999975642434588679731213079978604015
No 408
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.19 E-value=16 Score=17.21 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78887489999999985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
-|||||-+.+-++-=+-+.|+++..+|--
T Consensus 37 ~~tGKSvLsqr~~YG~L~~g~~v~yvsTe 65 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLMNGYRVTYVSTE 65 (235)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 98548899999999887089548999840
No 409
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=51.16 E-value=19 Score=16.69 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+-+|+|||=.+-|.=.---..||++.|.+.|+++.-..
T Consensus 2 A~iI~iG~ElL~G~i~dtN~~~l~~~L~~~G~~v~~~~ 39 (170)
T cd00885 2 AEIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVT 39 (170)
T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 59999823540670233249999999997798266899
No 410
>PRK04195 replication factor C large subunit; Provisional
Probab=51.10 E-value=19 Score=16.68 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 98899823000788874899999999852473159
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
-+++-.|- -|+|||-++..||+.+ |+.+.
T Consensus 41 k~lLL~GP---pGvGKTT~a~~lAk~~---g~~vi 69 (403)
T PRK04195 41 KALLLYGP---PGVGKTSLAHALANDY---GWEVI 69 (403)
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHH---CCCEE
T ss_conf 46998893---9987999999999984---99859
No 411
>PRK05973 replicative DNA helicase; Provisional
Probab=51.09 E-value=16 Score=17.26 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7888748999999998524731598760457
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
=|.|||-+.+-++....+.|..+++-|=-|.
T Consensus 73 PsMGKTafaLnla~~A~k~g~~v~fFSLEM~ 103 (237)
T PRK05973 73 PGQGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9887899999999999995996699961599
No 412
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=51.07 E-value=8.6 Score=19.18 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 433889889982300078887489999999985247315987
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+....+.||.||+ +|.|||-+...+++---...|.|.|.
T Consensus 9 p~~~~~KiVlVGD---~~VGKTsLl~~~~~~~F~~~y~pTv~ 47 (232)
T cd04174 9 PLVMRCKLVLVGD---VQCGKTAMLQVLAKDCYPETYVPTVF 47 (232)
T ss_pred CCCEEEEEEEECC---CCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 9855889999998---99899999999973989998588368
No 413
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=51.01 E-value=12 Score=18.06 Aligned_cols=181 Identities=17% Similarity=0.253 Sum_probs=101.0
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCEEEECCC--------------C-CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHC
Q ss_conf 576346520122566410245747997183--------------2-2344123069999618433566553761365210
Q gi|254780401|r 114 RAVTIVTSDRKIGVQMLLQEGVDIIIMDDG--------------F-HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVP 178 (338)
Q Consensus 114 ~~pv~V~~~R~~~~~~~~~~~~diiIlDDG--------------f-Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp 178 (338)
.+.++|+.||..|+....++.|.||.||=| + |=.++.+|..++|+.+++. ||
T Consensus 21 ~Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVIViTGN~~------------r~- 87 (451)
T TIGR02915 21 DYEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIVITGNDD------------RE- 87 (451)
T ss_pred CCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC------------CH-
T ss_conf 84035534757899986056996477367557898874589999999996389804899866898------------38-
Q ss_pred CHHHHHHHHH---HHHCCCCH-H-----------------------------------HHHHHCCCCHHHHHHH---HC-
Q ss_conf 0255665145---44204412-4-----------------------------------5776313501112222---01-
Q gi|254780401|r 179 LSRQLSYVDA---ILYVGNKK-N-----------------------------------VISSIKNKSVYFAKLK---PR- 215 (338)
Q Consensus 179 ~~~~l~rad~---vi~~~~~~-~-----------------------------------~~~~~~~~~i~~~~~~---~~- 215 (338)
+|+|-..+ -++.|.-+ + ++..-+...-.+..++ +.
T Consensus 88 --NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIekvA~sd 165 (451)
T TIGR02915 88 --NALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIEKVAPSD 165 (451)
T ss_pred --HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCC
T ss_conf --899996437510135787578999999998888888887699874068874103652206850678988865212000
Q ss_pred ---------------------CCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCC----------CCCCCCCCCCC-----
Q ss_conf ---------------------3211168638987-4155357899988740100----------00122143323-----
Q gi|254780401|r 216 ---------------------LTFDLSGKKVLAF-SGIADTEKFFTTVRQLGAL----------IEQCYSFGDHA----- 258 (338)
Q Consensus 216 ---------------------~~~~l~~k~v~af-sGIa~P~~F~~~L~~~g~~----------i~~~~~fpDHh----- 258 (338)
..++-++++++|+ || |=||.+.++ +=.|++ ..+++.|..--
T Consensus 166 ~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCA-AIPEnLLEs-ELFGyEKGAFTGA~k~T~GKIE~A~~GTLFLD 243 (451)
T TIGR02915 166 ITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCA-AIPENLLES-ELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLD 243 (451)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCHHHHH-HHHCCCCHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 0130104667117899989842057897773444167-457524667-76034101242200347761675068830111
Q ss_pred -------CCCHHHHHHHHHHHHH---------CCCEEE-ECHHHHHHCCCCCCCCHHHHCCEEEEEEEEE
Q ss_conf -------4898999999997564---------798799-8546634382333441112205178876989
Q gi|254780401|r 259 -------HLSDKKIAYLLDQAQQ---------KGLILV-TTAKDAMRLHKRPGRAEEIFAKSMVIEVDIV 311 (338)
Q Consensus 259 -------~ys~~dl~~i~~~a~~---------~~~~ii-TTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~ 311 (338)
....+-|.++.++--+ -+..|| -|-.|.-++-.......+++|.+-.+.|++=
T Consensus 244 EIGDLP~~LQAKLLRFLQErVIER~GGR~eIPVDVRvvCATnqdL~~~i~eg~FREDLfYRl~Eisi~iP 313 (451)
T TIGR02915 244 EIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRVVCATNQDLKKMIAEGTFREDLFYRLAEISITIP 313 (451)
T ss_pred CHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEEEEEEEECC
T ss_conf 1220676689999987546663105887245614267503224689998548972000134666786258
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=50.90 E-value=8.3 Score=19.26 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=17.2
Q ss_pred EEEC--CCCCCHHHHHHHHHHHH
Q ss_conf 0007--88874899999999852
Q gi|254780401|r 52 FVMG--GTGKTPTALAIAKAVID 72 (338)
Q Consensus 52 itvG--GtGKTP~v~~l~~~l~~ 72 (338)
|-.| |||||.++..+|+.|.-
T Consensus 42 LFsGprG~GKTt~ArilAk~LnC 64 (560)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNC 64 (560)
T ss_pred EEECCCCCCHHHHHHHHHHHHCC
T ss_conf 63289987899999999999659
No 415
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=50.89 E-value=16 Score=17.24 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 23000788874899999999852
Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~ 72 (338)
|=+-.=|+|||=+|..|.+.+.+
T Consensus 27 aIlg~TGsGKS~tv~vLl~~l~~ 49 (218)
T pfam01935 27 AILGSTGSGKSNTVAVLLEELLE 49 (218)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
T ss_conf 78726999769999999999985
No 416
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=50.86 E-value=7 Score=19.80 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=64.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCC
Q ss_conf 89889982300078887489999999985247315987604-578777755871456788770421233220--576346
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG-YGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIV 119 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG-Yg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V 119 (338)
+=||-.+|-++ |++..+|+ +.|++=.-||=| +-+.+-| .=|.+-+|-.||=-+...|++ +.|++|
T Consensus 12 ~~ilq~pGa~n-------~~~AL~Ae---~aGF~A~YLSGaa~aa~sLG--lPDLG~~tL~Eva~~~r~Itr~~~LPlLV 79 (287)
T TIGR02317 12 EDILQIPGAIN-------GLVALLAE---RAGFEAIYLSGAAVAAGSLG--LPDLGITTLTEVAERARRITRVTDLPLLV 79 (287)
T ss_pred CCCEEECCHHH-------HHHHHHHH---HCCCCEEEEHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89748714061-------89999998---63755661016877413206--77676678789999988777530487278
Q ss_pred CCCHH--------HHHHHHCCCC--------------C------CEEEECCCCCCC----CCCCEEEEEEE---CCCCCC
Q ss_conf 52012--------2566410245--------------7------479971832234----41230699996---184335
Q gi|254780401|r 120 TSDRK--------IGVQMLLQEG--------------V------DIIIMDDGFHSA----DLQADFSLIVV---NSHRGL 164 (338)
Q Consensus 120 ~~~R~--------~~~~~~~~~~--------------~------diiIlDDGfQh~----~l~rdl~Ivl~---d~~~~~ 164 (338)
+-|== +.++.+++.+ | .+|=.||-=+-- +-++|=|+|++ ||.-
T Consensus 80 D~DTGFGea~nvaRTVreme~AGaAa~HiEDQv~pKrCGHL~gK~lv~~~eMv~kI~AAv~Ar~De~f~iiARTDA~A-- 157 (287)
T TIGR02317 80 DADTGFGEALNVARTVREMEDAGAAAVHIEDQVLPKRCGHLNGKELVSRDEMVRKIKAAVDARRDEDFVIIARTDARA-- 157 (287)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHH--
T ss_conf 633289835449999999998445400467742544267898874048877999999971478999727753102342--
Q ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 6655376136521002556651454420441
Q gi|254780401|r 165 GNGLVFPAGPLRVPLSRQLSYVDAILYVGNK 195 (338)
Q Consensus 165 gn~~llPaGpLREp~~~~l~rad~vi~~~~~ 195 (338)
=|.+..++.||.+=|-=|.+
T Consensus 158 -----------vEGld~AI~RA~aYvEAGAD 177 (287)
T TIGR02317 158 -----------VEGLDAAIERAKAYVEAGAD 177 (287)
T ss_pred -----------HCCHHHHHHHHHHHHHHCCC
T ss_conf -----------13658899999867872615
No 417
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=50.69 E-value=18 Score=16.88 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=28.2
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88988998230007888748999999998524731598
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
.+.|+|. .+|=.|||-+|..+...|++.|.+..+
T Consensus 108 ~~~~~~a----ITGTnGKtTTT~L~~~~L~~~G~~a~~ 141 (476)
T TIGR01087 108 EPAKVVA----ITGTNGKTTTTSLLYHLLKAAGLKAVL 141 (476)
T ss_pred CCCCEEE----EECCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9873799----972686079999999999846997786
No 418
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=50.65 E-value=11 Score=18.53 Aligned_cols=22 Identities=50% Similarity=0.753 Sum_probs=18.1
Q ss_pred EEC--CCCCCHHHHHHHHHHHHCC
Q ss_conf 007--8887489999999985247
Q gi|254780401|r 53 VMG--GTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 53 tvG--GtGKTP~v~~l~~~l~~~g 74 (338)
-.| |+|||.++..||+.|...+
T Consensus 29 ~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 29 FYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 379999978999999999965866
No 419
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=50.61 E-value=8.2 Score=19.30 Aligned_cols=42 Identities=31% Similarity=0.300 Sum_probs=26.5
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC-CC--EEEEEECCC
Q ss_conf 3889889982300078887489999999985247-31--598760457
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN-LK--PGFLSRGYG 85 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~--~~ilsRGYg 85 (338)
+.+--|+--|.+ |+|||-+|..+++-|--.+ .+ .-.|-+-|.
T Consensus 23 ~~g~Vv~L~GdL---GAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~ 67 (149)
T COG0802 23 KAGDVVLLSGDL---GAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYE 67 (149)
T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHCCCCCCCCCCCEEEEHHHC
T ss_conf 899889997787---688599999999974999752498761012113
No 420
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=50.48 E-value=20 Score=16.61 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=53.5
Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEECCCCC--C-CCCEEEECCCCCHHHHCC--HHHHHH-----HCCC
Q ss_conf 982300078887489999999985247-3159876045787--7-775587145678877042--123322-----0576
Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRGYGRK--S-RISFRVDLEKHSAYDVGD--EPLLLA-----RRAV 116 (338)
Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRGYg~~--~-~~~~~v~~~~~~~~~vGD--Ep~lla-----~~~p 116 (338)
.+.||.+-|.|=.=.+--+++.+.... .-|.++.|+|.=- . ...+.+..+. .|. |.+... +.+.
T Consensus 33 ~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~v~~~y~lP~~v~~~tLVIavSy-----SGnTeETL~a~~~A~~rga~ 107 (328)
T PRK08674 33 PYDNIVISGMGGSGIGGDLLRSLLLDEWKKPVFVVRDYFLPAFVDRKTLVIAVSY-----SGNTEETLSAVEQAKKRGAK 107 (328)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECC-----CCCCHHHHHHHHHHHHCCCC
T ss_conf 6572999957564899999999984479986798558879986588857999828-----99977999999999975995
Q ss_pred C-CCCCCHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 3-4652012256641024574799718322344
Q gi|254780401|r 117 T-IVTSDRKIGVQMLLQEGVDIIIMDDGFHSAD 148 (338)
Q Consensus 117 v-~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~ 148 (338)
+ +|+..- .-.+.+.+.+..+|.+.-|+|-|.
T Consensus 108 vi~ItsGG-~L~~~a~~~~~~~i~vp~g~~pRa 139 (328)
T PRK08674 108 IIAITSGG-KLAEMAKEKGVPVIKIPGGYQPRA 139 (328)
T ss_pred EEEEECCC-CHHHHHHHCCCCEEEECCCCCHHH
T ss_conf 89994897-067899877998894269864699
No 421
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.47 E-value=14 Score=17.65 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 7489999999985247315987604
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
++|.++|+...|+++|+.+.|.+--
T Consensus 17 qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 17 QISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 2047898887763058517996287
No 422
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=50.44 E-value=20 Score=16.61 Aligned_cols=222 Identities=20% Similarity=0.259 Sum_probs=106.0
Q ss_pred CCCEEEECCEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--
Q ss_conf 898899823000----78887489999999985247315987604578777755871456788770421233220576--
Q gi|254780401|r 43 PIPVICVGGFVM----GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-- 116 (338)
Q Consensus 43 ~~pVI~VGNitv----GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-- 116 (338)
-+|.+.-|.=.+ =||||| ..|+.-.|+..... ..+.|.. .+++.+...-|.++-+|..-++...+
T Consensus 59 ~iP~~l~g~Dvi~~A~TGsGKT--~Af~lP~l~~i~~~---~~~~~~~----aLil~PTRELA~Qi~~~~~~~~~~~~~~ 129 (513)
T COG0513 59 AIPLILAGRDVLGQAQTGTGKT--AAFLLPLLQKILKS---VERKYVS----ALILAPTRELAVQIAEELRKLGKNLGGL 129 (513)
T ss_pred HCHHHHCCCCEEEECCCCCHHH--HHHHHHHHHHHHHC---CCCCCCC----EEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5877636999799868987178--99999999997400---4557775----6997799999999999999998624584
Q ss_pred ---CCCCCCHHHHHHHHCCCCCCEEEECCC--CCC---C--CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH
Q ss_conf ---346520122566410245747997183--223---4--412306999961843356655376136521002556651
Q gi|254780401|r 117 ---TIVTSDRKIGVQMLLQEGVDIIIMDDG--FHS---A--DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV 186 (338)
Q Consensus 117 ---v~V~~~R~~~~~~~~~~~~diiIlDDG--fQh---~--~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra 186 (338)
+++|..-...-....+.++|+||--.| +.| . .+ ..++.+++|--. ++|=.|-.. .+..-++..
T Consensus 130 ~~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRllD~i~~~~l~l-~~v~~lVlDEAD-----rmld~gf~~-~i~~I~~~~ 202 (513)
T COG0513 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDL-SGVETLVLDEAD-----RMLDMGFID-DIEKILKAL 202 (513)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCC-CCEEEEEECCHH-----HHCCCCCHH-HHHHHHHHC
T ss_conf 2999989989899999872499899979608999986488554-650189967617-----663887689-999999738
Q ss_pred H----HHHHCCC-CHH---HHHHHCCCC--------------------HHHHHH---HHC----CCCCCCCCEEEEEEC-
Q ss_conf 4----5442044-124---577631350--------------------111222---201----321116863898741-
Q gi|254780401|r 187 D----AILYVGN-KKN---VISSIKNKS--------------------VYFAKL---KPR----LTFDLSGKKVLAFSG- 230 (338)
Q Consensus 187 d----~vi~~~~-~~~---~~~~~~~~~--------------------i~~~~~---~~~----~~~~l~~k~v~afsG- 230 (338)
. .++++-. +.. ....+...| .+.... +.. ........++++||-
T Consensus 203 p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~t 282 (513)
T COG0513 203 PPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRT 282 (513)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 97748999982489899999999736880799643223353004707999808567799999999827888839999576
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHHH
Q ss_conf 55357899988740100001221433234898999999997564798-79985466
Q gi|254780401|r 231 IADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAKD 285 (338)
Q Consensus 231 Ia~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEKD 285 (338)
...-+.+...|+..|+.+. .=|-.-+...-.+..+..+.... .+|+|.==
T Consensus 283 k~~~~~l~~~l~~~g~~~~-----~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDva 333 (513)
T COG0513 283 KRLVEELAESLRKRGFKVA-----ALHGDLPQEERDRALEKFKDGELRVLVATDVA 333 (513)
T ss_pred HHHHHHHHHHHHHCCCEEE-----EEECCCCHHHHHHHHHHHHCCCCCEEEEECHH
T ss_conf 7769999999997896599-----97388998899999999975998989980654
No 423
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=50.39 E-value=20 Score=16.60 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=48.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CCEEEECCCCCHHHH-CCHHHHHHHCCCCCCCCC-----
Q ss_conf 078887489999999985247315987604578777-----755871456788770-421233220576346520-----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR-----ISFRVDLEKHSAYDV-GDEPLLLARRAVTIVTSD----- 122 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~-----~~~~v~~~~~~~~~v-GDEp~lla~~~pv~V~~~----- 122 (338)
..|||||-+-...-+.....||+|.=++=. ||.. +.-+....-++++.. ......|-.+..++|++-
T Consensus 370 ~AGtGKStmL~aAReawEa~GyrV~GaALs--GkAAegLe~~sGI~SrTlAs~e~~w~~g~~~L~~~dVlVVDEAGMVgS 447 (992)
T PRK13889 370 YAGTGKSAMLGVAREAWEAAGYEVRGAALS--GIAAENLEGGSGIASRTIASLEHGWGQGRDLLTARDVLVIDEAGMVGT 447 (992)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH
T ss_conf 388878899999999999779889811500--689997653479431679999998746733478985899967655774
Q ss_pred -HHHH-HHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf -1225-6641024574799718322344123
Q gi|254780401|r 123 -RKIG-VQMLLQEGVDIIIMDDGFHSADLQA 151 (338)
Q Consensus 123 -R~~~-~~~~~~~~~diiIlDDGfQh~~l~r 151 (338)
-... ++.+.+.++.||++-|-.|--.+..
T Consensus 448 RqMarll~~Ae~AGAKVVLVGD~~QLq~IeA 478 (992)
T PRK13889 448 RQLERVLSHAADAGAKVVLVGDPQQLQAIEA 478 (992)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHCCCCCC
T ss_conf 9999999999984998999488777188646
No 424
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=50.23 E-value=13 Score=17.77 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+|||-++..+.+.|.+. ++++|+-
T Consensus 8 SGSGKTTv~~~i~~ifg~~--~v~vI~~ 33 (273)
T cd02026 8 SGCGKSTFLRRLTSLFGSD--LVTVICL 33 (273)
T ss_pred CCCCHHHHHHHHHHHHCCC--CEEEEEC
T ss_conf 8786999999999985848--7699965
No 425
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=50.14 E-value=9 Score=19.03 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=18.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899823000788874899999999852
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
-+-.|- -|+|||+++..+|+.|.-
T Consensus 41 YLFsGP---rGvGKTTlArifAkaLnC 64 (613)
T PRK05896 41 YIFSGP---RGIGKTSIAKIFAKAINC 64 (613)
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCC
T ss_conf 775589---984889999999999669
No 426
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=50.13 E-value=17 Score=17.14 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=25.1
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 007888748999999998524731598760
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+.|+.|-.-=.+.|++.|.++|+.|.+++-
T Consensus 7 ~~~~~GH~~P~l~lA~~L~~rGh~Vt~~~~ 36 (401)
T cd03784 7 TIGSRGDVQPLVALAWALRAAGHEVRVATP 36 (401)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 798575899999999999988995999938
No 427
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=50.06 E-value=19 Score=16.68 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=28.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89982300078887489999999985247315987604578
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|+=|.|. .||..+ .+.-||+.|.++|+.|.|++.+++.
T Consensus 2 il~i~~~-~GG~e~--~~~~La~~L~~~Gh~V~vit~~~~~ 39 (359)
T cd03808 2 ILHIVTV-DGGLYS--FRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred EEEEECC-CCHHHH--HHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 8999758-765999--9999999999769999999707987
No 428
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=50.06 E-value=16 Score=17.17 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=27.2
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 00788874899999999852473159876045
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
++|==|||-+|..|+..+++.|..|-++==|-
T Consensus 113 VaGtHGKTTTTamia~~~~~aGLdPt~~~GG~ 144 (491)
T TIGR01082 113 VAGTHGKTTTTAMIAVILKEAGLDPTVIVGGE 144 (491)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 98368725689999999984499976898664
No 429
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=50.04 E-value=9.7 Score=18.78 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=19.1
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8898899823000788874899999999852
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
.+--||-=|. -|||||=++.+||..|-.
T Consensus 193 tKknvIL~G~---pGtGKT~lAk~lA~~l~g 220 (459)
T PRK11331 193 IKKNIILQGP---PGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCCEEEECC---CCCCHHHHHHHHHHHHHC
T ss_conf 5882796589---998878999999999707
No 430
>PRK08233 hypothetical protein; Provisional
Probab=50.00 E-value=17 Score=17.03 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.0
Q ss_pred ECCCCCCHHHHHHHHHHHH
Q ss_conf 0788874899999999852
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~ 72 (338)
.-|+|||-++..|++.|.+
T Consensus 11 gSgSGKTtla~~l~~~l~~ 29 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred CCCCCHHHHHHHHHHHCCC
T ss_conf 8867899999999997467
No 431
>KOG0991 consensus
Probab=49.94 E-value=6.4 Score=20.05 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=92.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHH-CC
Q ss_conf 07888748999999998524731598760457877775587145678877042123322057634652012256641-02
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQML-LQ 132 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~-~~ 132 (338)
.-|||||..+..||..|....||-++|- + +.. ||-= +=|.+++.+...+- ..
T Consensus 56 pPG~GKTTsi~~LAr~LLG~~~ke~vLE------------L----NAS----deRG-------IDvVRn~IK~FAQ~kv~ 108 (333)
T KOG0991 56 PPGTGKTTSILCLARELLGDSYKEAVLE------------L----NAS----DERG-------IDVVRNKIKMFAQKKVT 108 (333)
T ss_pred CCCCCHHHHHHHHHHHHHCHHHHHHHHH------------C----CCC----CCCC-------CHHHHHHHHHHHHHHCC
T ss_conf 9998616489999999838066657632------------0----576----5546-------08999999999872034
Q ss_pred C---CCCEEEECCC------CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH-HHHHHH
Q ss_conf 4---5747997183------22344123069999618433566553761365210025566514544204412-457763
Q gi|254780401|r 133 E---GVDIIIMDDG------FHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK-NVISSI 202 (338)
Q Consensus 133 ~---~~diiIlDDG------fQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~-~~~~~~ 202 (338)
. ...+||||.+ -| -.|.|..+|---. ..|-- -+=-.--.=||+. .|+-++=+++-.+ +.+...
T Consensus 109 lp~grhKIiILDEADSMT~gAQ-QAlRRtMEiyS~t--tRFal-aCN~s~KIiEPIQ---SRCAiLRysklsd~qiL~Rl 181 (333)
T KOG0991 109 LPPGRHKIIILDEADSMTAGAQ-QALRRTMEIYSNT--TRFAL-ACNQSEKIIEPIQ---SRCAILRYSKLSDQQILKRL 181 (333)
T ss_pred CCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHCCC--CHHHH-HHCCHHHHHHHHH---HHHHHHHHCCCCHHHHHHHH
T ss_conf 8998524899615220206899-9999999997063--20000-0154213222677---34576532226789999999
Q ss_pred ----CC-----------CCHHHHHHHH-----------CCCCCCCCCEEEEEECCCCHHHHHHHHHHH---CCCCCCCCC
Q ss_conf ----13-----------5011122220-----------132111686389874155357899988740---100001221
Q gi|254780401|r 203 ----KN-----------KSVYFAKLKP-----------RLTFDLSGKKVLAFSGIADTEKFFTTVRQL---GALIEQCYS 253 (338)
Q Consensus 203 ----~~-----------~~i~~~~~~~-----------~~~~~l~~k~v~afsGIa~P~~F~~~L~~~---g~~i~~~~~ 253 (338)
+. .-+|.++..- .-.......+|+-+|+--.|....++|... ++... ...
T Consensus 182 ~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A-~~i 260 (333)
T KOG0991 182 LEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEA-LKI 260 (333)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH-HHH
T ss_conf 9999870788771147785544166199999999987405452463231000699985999999999986129999-999
Q ss_pred CC--CCCCCCHHHH-HHHHHHHHHCCCEEEECHHHHHHC
Q ss_conf 43--3234898999-999997564798799854663438
Q gi|254780401|r 254 FG--DHAHLSDKKI-AYLLDQAQQKGLILVTTAKDAMRL 289 (338)
Q Consensus 254 fp--DHh~ys~~dl-~~i~~~a~~~~~~iiTTEKD~VKL 289 (338)
+. =|--||..|+ ..+++-++..+ -+.++||
T Consensus 261 l~~lw~lgysp~Dii~~~FRv~K~~~------~~E~~rl 293 (333)
T KOG0991 261 LAELWKLGYSPEDIITTLFRVVKNMD------VAESLRL 293 (333)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCC------HHHHHHH
T ss_conf 99999748988999999999998425------7889999
No 432
>pfam03420 Peptidase_U9 Prohead core protein protease.
Probab=49.92 E-value=11 Score=18.42 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=17.9
Q ss_pred CHH-HHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 489-9999999852473159876045787
Q gi|254780401|r 60 TPT-ALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 60 TP~-v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
||. .--+++.|.+.|.+++|-|||-|+-
T Consensus 120 TP~~~G~Ivk~Li~~Gv~lGVSSRGmGSl 148 (220)
T pfam03420 120 GDHGPGDILAALIEAGWIPGVSSRGLGSL 148 (220)
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 89743299999986797784635862342
No 433
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=49.90 E-value=18 Score=16.85 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 686389874155357899988740100001
Q gi|254780401|r 221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQ 250 (338)
Q Consensus 221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~ 250 (338)
+|++++.|+==-.|+.+.+..+++|+.+.+
T Consensus 293 ~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~ 322 (501)
T PRK09302 293 RGERCLLFAFEESRAQLVRNATSWGIDLEE 322 (501)
T ss_pred CCCCEEEEEEECCHHHHHHHHHHCCCCHHH
T ss_conf 599089999967999999999973998488
No 434
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=49.84 E-value=20 Score=16.55 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=15.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 0007888748999999998524
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~ 73 (338)
+.--|+|||-+...++....+.
T Consensus 75 ~~~~g~GKt~ll~~ii~~~~~~ 96 (274)
T cd01133 75 FGGAGVGKTVLIMELINNIAKA 96 (274)
T ss_pred ECCCCCCCCHHHHHHHHHHHHC
T ss_conf 5799998236899999999850
No 435
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=49.79 E-value=20 Score=16.54 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=42.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC------HHHHHHC
Q ss_conf 168638987415535789998874010000122143323489899999999756479879985------4663438
Q gi|254780401|r 220 LSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT------AKDAMRL 289 (338)
Q Consensus 220 l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTT------EKD~VKL 289 (338)
+...++.-. |---+...|+++|.+++..-.-+|. .+.+.+.+++|.+..+.|||| ++|+++=
T Consensus 195 l~~gqI~ds----N~~~l~a~l~~~G~e~~~~giv~Dd----~~~l~~~i~~a~~~~DviItsGG~SvG~~D~v~~ 262 (404)
T COG0303 195 LEPGQIYDS----NSYMLAALLERAGGEVVDLGIVPDD----PEALREAIEKALSEADVIITSGGVSVGDADYVKA 262 (404)
T ss_pred CCCCEEEEC----CHHHHHHHHHHCCCCEEECCCCCCC----HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf 999858736----7999999999759924533535999----8999999997752499999969866761466999
No 436
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.76 E-value=16 Score=17.28 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=25.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8998230007888748999999998524731598760
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|.--| +-||||..+|-++...+..+|.+.+=|+|
T Consensus 88 VLLwG---aRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 88 VLLWG---ARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf 67763---77777479999999998741770799768
No 437
>COG1158 Rho Transcription termination factor [Transcription]
Probab=49.75 E-value=20 Score=16.54 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=18.1
Q ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 25664102457479971832234412306999961
Q gi|254780401|r 125 IGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVN 159 (338)
Q Consensus 125 ~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d 159 (338)
+-|+.+.+++-|||||=|.. .+|.|-.|.|+-.
T Consensus 250 EkAKRlVE~~kDVVILLDSI--TRLaRAYN~v~P~ 282 (422)
T COG1158 250 EKAKRLVEHGKDVVILLDSI--TRLARAYNTVVPS 282 (422)
T ss_pred HHHHHHHHCCCCEEEEEHHH--HHHHHHHCCCCCC
T ss_conf 99998887178689996567--7899885366799
No 438
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=49.70 E-value=20 Score=16.53 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=27.3
Q ss_pred CCCCCCEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 3388988998-2300078887489999999985247315987604
Q gi|254780401|r 40 LHAPIPVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 40 ~~~~~pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
...+-|++|. |- =|+|||.+...+|+.|- .+..-+|=|
T Consensus 345 ~~~kg~IlclvGp---PGvGKTSl~~sIA~al~---r~f~rislG 383 (784)
T PRK10787 345 NKIKGPILCLVGP---PGVGKTSLGQSIAKATG---RKYVRMALG 383 (784)
T ss_pred CCCCCCEEEEECC---CCCCHHHHHHHHHHHHC---CCEEEEECC
T ss_conf 4677877996469---98772469999999858---986998068
No 439
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=49.65 E-value=20 Score=16.53 Aligned_cols=11 Identities=9% Similarity=0.296 Sum_probs=3.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 78999999999
Q gi|254780401|r 315 PDDLTNLVEMT 325 (338)
Q Consensus 315 ~~~l~~~l~~~ 325 (338)
+..+.+.+.+.
T Consensus 194 p~~m~~~~~~~ 204 (218)
T cd06196 194 PPPMEEAINGA 204 (218)
T ss_pred CHHHHHHHHHH
T ss_conf 99999999999
No 440
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=49.63 E-value=11 Score=18.33 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=16.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 9889982300078887489999999
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+.||.||+ +|.|||-++..++.
T Consensus 1 vKIlllGD---sgVGKTSL~~~~~~ 22 (202)
T cd04102 1 VRVLVVGD---SGVGKSSLVHLICK 22 (202)
T ss_pred CEEEEECC---CCCCHHHHHHHHHC
T ss_conf 98999999---99899999999983
No 441
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=49.55 E-value=14 Score=17.66 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=14.8
Q ss_pred ECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8230007888748999999998
Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l 70 (338)
=||+ |+|||-++..|++.+
T Consensus 5 EG~i---GsGKSTl~~~L~~~~ 23 (193)
T cd01673 5 EGNI---GAGKSTLAKELAEHL 23 (193)
T ss_pred ECCC---CCCHHHHHHHHHHHH
T ss_conf 8888---888999999999966
No 442
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=49.53 E-value=17 Score=17.00 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=16.7
Q ss_pred ECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 823000788874899999999852
Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
+|=+=--|+|||-+.-.++..++.
T Consensus 29 ~~lvG~nGaGKSTl~~~i~Gl~~p 52 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999988998999999999577689
No 443
>KOG0534 consensus
Probab=49.02 E-value=18 Score=16.95 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=4.2
Q ss_pred CCCCCCCHHHH
Q ss_conf 65537613652
Q gi|254780401|r 166 NGLVFPAGPLR 176 (338)
Q Consensus 166 n~~llPaGpLR 176 (338)
...+-|.-|+=
T Consensus 97 ~~vvRpYTPvs 107 (286)
T KOG0534 97 KLVVRPYTPVS 107 (286)
T ss_pred CEEEEECCCCC
T ss_conf 68997068746
No 444
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=48.95 E-value=9.8 Score=18.77 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=18.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899823000788874899999999852
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
-+-.| --|+|||.++..+|+.|.-
T Consensus 39 YLFsG---PrGvGKTt~ArifAkaLnC 62 (523)
T PRK08451 39 YLFSG---LRGSGKTSSARIFSRALVC 62 (523)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHCC
T ss_conf 87578---9986889999999999759
No 445
>PRK08727 hypothetical protein; Validated
Probab=48.88 E-value=18 Score=16.89 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=24.5
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
++...|. -|+|||=+...++......|.++..++
T Consensus 43 ~lyl~G~---~GsGKTHLl~a~~~~~~~~~~~~~yl~ 76 (233)
T PRK08727 43 WLYLSGP---AGTGKTHLALSLCAAAEQAGRSSAYLP 76 (233)
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999899---999889999999999982799728844
No 446
>PRK05642 DNA replication initiation factor; Validated
Probab=48.80 E-value=19 Score=16.70 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=23.8
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|+...|. -|+|||=+..+++....+.|.++..++
T Consensus 47 ~l~i~G~---~G~GKTHLL~A~~~~~~~~~~~~~yl~ 80 (234)
T PRK05642 47 LIYLWGK---DGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3899889---999889999999999980799679978
No 447
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=48.76 E-value=21 Score=16.43 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=30.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE-ECCCC
Q ss_conf 8898899823000788874899999999852473159876-04578
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS-RGYGR 86 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils-RGYg~ 86 (338)
-+.+||.| | |-.|||-++.++++.++..|.++++++ .|+.-
T Consensus 89 ~~l~vigv---T-GTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~ 130 (475)
T COG0769 89 GKLKVIGV---T-GTNGKTTTTSLLAQILKKLGKKTALIGTEGDEL 130 (475)
T ss_pred CCCEEEEE---C-CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_conf 78518986---3-878579999999999886298258999776632
No 448
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=48.73 E-value=20 Score=16.48 Aligned_cols=39 Identities=21% Similarity=0.105 Sum_probs=32.5
Q ss_pred CCEEEEC--CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9889982--30007888748999999998524731598760
Q gi|254780401|r 44 IPVICVG--GFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VG--NitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-..|-|- |-|--|-|||-+++-|++-|.+.|++..+-.|
T Consensus 54 gklilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~lR 94 (577)
T PRK13506 54 GKLVIVTAVTPTPLGEGKTVTTIGLTQGLNALGQKVCACIR 94 (577)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 64999985689889898411098799999871984589972
No 449
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=48.64 E-value=19 Score=16.65 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=26.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=||-||+-++.-++-.|.++|+||-++--
T Consensus 39 KGGIGKSTts~NlsAAlA~~GkkVm~IGC 67 (329)
T cd02033 39 KGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 88435616889999999977996999788
No 450
>PRK12608 transcription termination factor Rho; Provisional
Probab=48.61 E-value=21 Score=16.42 Aligned_cols=183 Identities=20% Similarity=0.220 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCC------CCHHH-
Q ss_conf 788874899999999852473159876045787777558714567887704212332205--763465------20122-
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVT------SDRKI- 125 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~------~~R~~- 125 (338)
=+||||-+..-+|+-+.+..-.+.++- ++++ .-++||-| +.+. +.|+.+ .++.+
T Consensus 141 PkaGKT~LLq~IA~aI~~NhPev~liv----------LLID---ERPEEVTd----m~r~v~gEVvaSTfD~~~~~h~~v 203 (379)
T PRK12608 141 PRAGKTILLQQIAQAVAANHPDIHLMV----------LLID---ERPEEVTD----MKRSVKGEVYASTFDRPYDRHIRV 203 (379)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE----------EECC---CCCHHHHH----HHHHCCEEEEEECCCCCHHHHHHH
T ss_conf 986578999999999985799848999----------9816---89358888----886237079997798998999999
Q ss_pred ------HHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf ------56641024574799718322344123069999618433566553761365210025566514544204412457
Q gi|254780401|r 126 ------GVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVI 199 (338)
Q Consensus 126 ------~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~ 199 (338)
-|+.+.+.+-||+||=|.+ .+|.|-++.+.-.+-+-.. --+++.-|.-| +..+
T Consensus 204 Ael~lerAkrlvE~G~dVvillDSi--TRlaRAyn~~~~~sGr~ls--gg~d~~al~~p-----------------k~~F 262 (379)
T PRK12608 204 AELVLERAKRLVEEGKDVVILLDSL--TRLARAYNSEVDSSGRTLS--GGVDARALERP-----------------KRLF 262 (379)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHCCCCCCCCCCC--CCCCHHHHHHH-----------------HHHH
T ss_conf 9999999999987699689996517--7889987533688886157--78695675006-----------------8985
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCCCE----EEEEECCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7631350111222201321116863----898741553578999887401-00001221433234898999999997564
Q gi|254780401|r 200 SSIKNKSVYFAKLKPRLTFDLSGKK----VLAFSGIADTEKFFTTVRQLG-ALIEQCYSFGDHAHLSDKKIAYLLDQAQQ 274 (338)
Q Consensus 200 ~~~~~~~i~~~~~~~~~~~~l~~k~----v~afsGIa~P~~F~~~L~~~g-~~i~~~~~fpDHh~ys~~dl~~i~~~a~~ 274 (338)
....+ ..+--.-. +++=+|=--.+-.|+.++..| -+++-.....|.-.|..-|+.+ +..
T Consensus 263 gaar~------------ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r~fPAIdi~~----SgT 326 (379)
T PRK12608 263 GAARK------------IEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAK----SGT 326 (379)
T ss_pred HHCCC------------CCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCC----CCC
T ss_conf 31257------------77886632566663226664345889996326860899725577678875115545----776
Q ss_pred CCCEEEECHHHHHHCCC
Q ss_conf 79879985466343823
Q gi|254780401|r 275 KGLILVTTAKDAMRLHK 291 (338)
Q Consensus 275 ~~~~iiTTEKD~VKL~~ 291 (338)
....++.++++.-++..
T Consensus 327 R~EelLl~~~e~~~~~~ 343 (379)
T PRK12608 327 RREELLLDSKELEKVRL 343 (379)
T ss_pred CHHHHCCCHHHHHHHHH
T ss_conf 22665489999999999
No 451
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=48.58 E-value=21 Score=16.41 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=19.8
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 634652012256641024574799718322
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDGfQ 145 (338)
.|..+.+=.+|...+.+..+|++|+|..+.
T Consensus 26 ~V~~a~~~~ea~~~~~~~~~DlvilDi~lp 55 (222)
T PRK10643 26 ACDGVSTAREAEQSLESGHYSLVVLDLGLP 55 (222)
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999989999999999748998999968889
No 452
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=48.45 E-value=18 Score=16.80 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=32.0
Q ss_pred CCCCEEEEEEECCCCCCCC-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEE
Q ss_conf 4123069999618433566-553761365210025566514544204412457763135011122220132111686389
Q gi|254780401|r 148 DLQADFSLIVVNSHRGLGN-GLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVL 226 (338)
Q Consensus 148 ~l~rdl~Ivl~d~~~~~gn-~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~k~v~ 226 (338)
.+.|..+|+--.....+-= =...|-|.+=.-+. .++..|-+.+.+.+... |.. + .. -.+++++
T Consensus 47 ~v~R~YSi~s~P~~~~lef~i~~v~~G~~S~~L~-~l~~Gd~v~~~~~~~G~---------f~l--~--~~--~~~~~l~ 110 (248)
T PRK10926 47 RVQRAYSYVNAPDNPNLEFYLVTVPEGKLSPRLA-ALKPGDEVQVVSEAAGF---------FVL--D--EV--PDCETLW 110 (248)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEECCCCCHHHHH-HCCCCCEEEECCCCCCE---------EEC--C--CC--CCCCEEE
T ss_conf 6640011114899995699999907985368896-16789879863799832---------766--6--78--8876179
Q ss_pred EEECCCCHHHHHHHHHHH
Q ss_conf 874155357899988740
Q gi|254780401|r 227 AFSGIADTEKFFTTVRQL 244 (338)
Q Consensus 227 afsGIa~P~~F~~~L~~~ 244 (338)
++||---=..|.++|++.
T Consensus 111 liAtGTGiaP~~Sml~~~ 128 (248)
T PRK10926 111 MLATGTAIGPYLSILQLG 128 (248)
T ss_pred EEEECCCHHHHHHHHHHH
T ss_conf 996045789999998727
No 453
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=48.28 E-value=21 Score=16.38 Aligned_cols=18 Identities=33% Similarity=0.193 Sum_probs=13.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|+|||-+...|+..+..
T Consensus 36 sGsGKSTLl~~l~Gl~~~ 53 (166)
T cd03223 36 SGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCCCHHHHHHHHCCCCCC
T ss_conf 999889999998698769
No 454
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=48.18 E-value=21 Score=16.37 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 33889889982300078887489999999985247315987604578
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
...|.|.+-|||- |+..|..+.|.+.|.+-.++.-||.+
T Consensus 20 ~~~PKPllpI~gk--------Pii~~~l~~L~~~Gv~eivi~~~y~~ 58 (358)
T COG1208 20 DDRPKPLLPIAGK--------PLIEYVLEALAAAGVEEIVLVVGYLG 58 (358)
T ss_pred CCCCCCCCEECCE--------EHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 8997446579986--------45999999999879978999877468
No 455
>PRK05580 primosome assembly protein PriA; Validated
Probab=48.17 E-value=21 Score=16.37 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=18.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|=|+|||=+-+.+++...++|.++.||-
T Consensus 194 vTGSGKTevYl~li~~~l~~GkqvLiLv 221 (699)
T PRK05580 194 VTGSGKTEVYLQAIAEALAQGKQALVLV 221 (699)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8986079999999999997399789991
No 456
>KOG0990 consensus
Probab=48.16 E-value=8.4 Score=19.24 Aligned_cols=19 Identities=47% Similarity=0.489 Sum_probs=16.9
Q ss_pred ECCCCCCHHHHHHHHHHHH
Q ss_conf 0788874899999999852
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~ 72 (338)
.=||||||++...++.|..
T Consensus 70 PPGtGktsti~a~a~~ly~ 88 (360)
T KOG0990 70 PPGTGKTSTILANARDFYS 88 (360)
T ss_pred CCCCCCCCCHHHHHHHHCC
T ss_conf 9988998736665665058
No 457
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=48.13 E-value=9.7 Score=18.80 Aligned_cols=18 Identities=50% Similarity=0.473 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|||||.++..+|+.|.-
T Consensus 46 ~GtGKts~ArifAkaLnC 63 (557)
T PRK07270 46 RGTGKTSAAKIFAKAMNC 63 (557)
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 986899999999999579
No 458
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=48.08 E-value=21 Score=16.36 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 07888748999999998524731598
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
+-|.|||=.-+.=|..++++|..|+|
T Consensus 13 apGVGKTy~ML~eA~~l~~~G~DVVi 38 (211)
T pfam02702 13 APGVGKTYAMLSEAHELLERGVDVVI 38 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99877899999999999978995699
No 459
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=47.99 E-value=10 Score=18.57 Aligned_cols=43 Identities=30% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHHC-CCCEEEEEE--CCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC
Q ss_conf 99999998524-731598760--45787777558714567887704212332205
Q gi|254780401|r 63 ALAIAKAVIDK-NLKPGFLSR--GYGRKSRISFRVDLEKHSAYDVGDEPLLLARR 114 (338)
Q Consensus 63 v~~l~~~l~~~-g~~~~ilsR--GYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~ 114 (338)
..++|+-|+++ +.+|=|||= |=||+ +..-+.-|||--.||...
T Consensus 183 sEAIA~NL~Ema~L~VPvic~vIGEGGS---------GGALaiGVGDkv~MLeyS 228 (329)
T TIGR00513 183 SEAIAKNLREMARLKVPVICTVIGEGGS---------GGALAIGVGDKVNMLEYS 228 (329)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCC---------HHHHHHHHHHHHHHHHHH
T ss_conf 7899999899710998879998526861---------478999898899887620
No 460
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=47.93 E-value=21 Score=16.35 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 78789999999999998
Q gi|254780401|r 313 ENPDDLTNLVEMTVVSF 329 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~~ 329 (338)
=.+..+.+.+.+.+.++
T Consensus 196 CGP~pMm~av~~~l~~~ 212 (253)
T cd06221 196 CGPPIMMRFVAKELLKL 212 (253)
T ss_pred ECCHHHHHHHHHHHHHC
T ss_conf 39999999999999984
No 461
>PRK13227 consensus
Probab=47.70 E-value=16 Score=17.28 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEC
Q ss_conf 5357899988740100001221433234898999999997564798--79985
Q gi|254780401|r 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL--ILVTT 282 (338)
Q Consensus 232 a~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~--~iiTT 282 (338)
=+|+.|...++.+|+...+.+.+-|. ..|+.. |+..+. .-|||
T Consensus 153 P~P~~~~~~~~~l~~~p~~~l~VGDs----~~Di~a----A~~AG~~~i~v~~ 197 (228)
T PRK13227 153 PHPAPLLLVCEKLGIAPEQMLFVGDS----RNDILA----AKAAGCPSVGLTY 197 (228)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCC----HHHHHH----HHHCCCCEEEECC
T ss_conf 97599999999819697549997778----889999----9996990999878
No 462
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=47.69 E-value=21 Score=16.36 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=29.6
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9982300078887489999999985247315987604578
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.++++..||+.+ .+.-|++.|.++|+.|.|++....+
T Consensus 4 ~v~~~~~~GG~e~--~~~~la~~L~~~G~~V~vi~~~~~~ 41 (353)
T cd03811 4 FVIPSLGGGGAER--VLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred EEECCCCCCHHHH--HHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 9969999915999--9999999999779979999977998
No 463
>PRK07004 replicative DNA helicase; Provisional
Probab=47.33 E-value=21 Score=16.45 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHH-HCCCCEEEEE
Q ss_conf 78887489999999985-2473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI-DKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~-~~g~~~~ils 81 (338)
=|.|||-+++-+|...- +.|..|++.|
T Consensus 222 PsmGKTafAlniA~n~A~~~g~~V~~FS 249 (460)
T PRK07004 222 PSMGKTAFSMNIGEYVAVEYGLPVAVFS 249 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 8764269999999999872588669984
No 464
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=47.11 E-value=21 Score=16.37 Aligned_cols=39 Identities=28% Similarity=0.211 Sum_probs=32.2
Q ss_pred CCEEEEC--CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9889982--30007888748999999998524731598760
Q gi|254780401|r 44 IPVICVG--GFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VG--NitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-..|.|- |-|--|-|||-+++-|++-|.+.|++..+-.|
T Consensus 38 gklilVTaitPTP~GEGKTTttIGL~~aL~~~gk~~~~~lR 78 (524)
T cd00477 38 GKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIACLR 78 (524)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 55999984688888888531099899999873663148861
No 465
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=47.00 E-value=12 Score=18.25 Aligned_cols=111 Identities=23% Similarity=0.242 Sum_probs=60.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC--------CCCCCCCEEEECCCCCHHH-HCCHHHHHHHC----CCCCCC
Q ss_conf 0788874899999999852473159876045--------7877775587145678877-04212332205----763465
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY--------GRKSRISFRVDLEKHSAYD-VGDEPLLLARR----AVTIVT 120 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY--------g~~~~~~~~v~~~~~~~~~-vGDEp~lla~~----~pv~V~ 120 (338)
|-|+|||-+...|++.|.+---....| =|= -.-++|-++=|.+.-+|.+ +||+..+.++. .++++|
T Consensus 6 vaG~GKs~~a~~l~~~lg~iyPd~~yi-eGDdLHP~~Ni~KMs~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~~~~~~C 84 (175)
T TIGR01313 6 VAGSGKSTIASALAHRLGDIYPDAKYI-EGDDLHPAANIEKMSRGIPLNDDDRWPWLKNLADALAQAAAKNKVHLVIITC 84 (175)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 278628899999999854315788756-8866678777987317888870120437999999999998457745447884
Q ss_pred CCHHHHHHHHCC----C-CC--CEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 201225664102----4-57--47997183223441230699996184335665537613652
Q gi|254780401|r 121 SDRKIGVQMLLQ----E-GV--DIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLR 176 (338)
Q Consensus 121 ~~R~~~~~~~~~----~-~~--diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLR 176 (338)
.-=++.-+=+++ . .+ .+|=|+ |=|.--+.| + ..| .|+.+|++.|-
T Consensus 85 SALKr~YRD~LR~s~~~~~~~~~FiyL~-~~~~~~~~R------~-~~R---kGHFMka~m~~ 136 (175)
T TIGR01313 85 SALKRKYRDILRSSLEEAEPELHFIYLS-GSKEVILKR------M-KSR---KGHFMKADMLE 136 (175)
T ss_pred ECCHHHHHHHHHHHHCCCCCCEEEEEEC-CCHHHHHHH------H-HHC---CCCCCCCHHHH
T ss_conf 0111355566542202689843788636-898999999------6-107---89986204789
No 466
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=47.00 E-value=22 Score=16.30 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=36.8
Q ss_pred CCCCCCCEEEECCEEE---CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 4338898899823000---78887489999999985247315987604578
Q gi|254780401|r 39 RLHAPIPVICVGGFVM---GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 39 ~~~~~~pVI~VGNitv---GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
++.+...+=.+||-.+ =|+|||-+.-+|+..+++-+-++.++-+++|.
T Consensus 436 py~fNfH~~d~GHtlI~G~TGsGKTtl~~fL~aq~~ky~~~~f~fDkd~~~ 486 (800)
T PRK13898 436 PFYFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRGA 486 (800)
T ss_pred CEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCH
T ss_conf 779867459877569989999989999999999987548879999799986
No 467
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=46.91 E-value=12 Score=18.15 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=15.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 9889982300078887489999999
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+.||.||+ +|.|||-++..+++
T Consensus 2 iKivlvGd---~~VGKTsli~r~~~ 23 (174)
T cd01871 2 IKCVVVGD---GAVGKTCLLISYTT 23 (174)
T ss_pred EEEEEECC---CCCCHHHHHHHHHH
T ss_conf 69999899---99869999999973
No 468
>PRK03839 putative kinase; Provisional
Probab=46.71 E-value=11 Score=18.40 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-++..|++.+ |+++.-++
T Consensus 9 PGtGKTTva~~La~~l---g~~~i~v~ 32 (180)
T PRK03839 9 PGVGKTTISKLLAEKL---GYEYVNLR 32 (180)
T ss_pred CCCCHHHHHHHHHHHH---CCEEEEHH
T ss_conf 9999899999999976---98798799
No 469
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=46.64 E-value=15 Score=17.53 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=33.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHH-HHHHHCC
Q ss_conf 078887489999999985247315987604578777755871456788770421233220576346520122-5664102
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKI-GVQMLLQ 132 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~-~~~~~~~ 132 (338)
--|+|||-+.-.|+..++...-++-+ .| .+ +. -.| ...-..+-.|.+ ++..+.-
T Consensus 33 pNGaGKSTllk~i~G~l~p~~G~i~~--~g--~~------~~----------~~p-----q~~~LSGGqrQRv~iAral~ 87 (177)
T cd03222 33 PNGTGKTTAVKILAGQLIPNGDNDEW--DG--IT------PV----------YKP-----QYIDLSGGELQRVAIAAALL 87 (177)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCEEE--CC--CC------EE----------CCC-----CCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999996886788994666--68--61------22----------155-----51507989999999999982
Q ss_pred CCCCEEEECCC
Q ss_conf 45747997183
Q gi|254780401|r 133 EGVDIIIMDDG 143 (338)
Q Consensus 133 ~~~diiIlDDG 143 (338)
.++++++||--
T Consensus 88 ~~p~lllLDEP 98 (177)
T cd03222 88 RNATFYLFDEP 98 (177)
T ss_pred CCCCEEEECCC
T ss_conf 39999997488
No 470
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=46.53 E-value=22 Score=16.20 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=27.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 07888748999999998524731598760457877
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
+||++ -.+..|++.|.++|+.|.|++.++....
T Consensus 13 ~GG~e--~~~~~la~~L~~~Gh~V~v~t~~~~~~~ 45 (364)
T cd03814 13 VNGVV--RTLQRLVEHLRARGHEVLVIAPGPFRES 45 (364)
T ss_pred CCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 88499--9999999999977998999978997655
No 471
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=46.39 E-value=23 Score=16.19 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=5.7
Q ss_pred EEEECCCCHHHHHHHH
Q ss_conf 9874155357899988
Q gi|254780401|r 226 LAFSGIADTEKFFTTV 241 (338)
Q Consensus 226 ~afsGIa~P~~F~~~L 241 (338)
+-+|| |..|.+..
T Consensus 184 vyiCG---p~~mv~~~ 196 (216)
T cd06198 184 VWFCG---PPGMADAL 196 (216)
T ss_pred EEEEC---CHHHHHHH
T ss_conf 99949---89999999
No 472
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.23 E-value=15 Score=17.44 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=36.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC---CCCCCCCCH-HHHHHH
Q ss_conf 0788874899999999852473159876045787777558714567887704212332205---763465201-225664
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR---AVTIVTSDR-KIGVQM 129 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~---~pv~V~~~R-~~~~~~ 129 (338)
--|+|||-+...|+..+... +|.+.+....-+. ..+..+.+. .|-..+-.| +.++..
T Consensus 33 ~nGaGKSTLl~~l~gl~~~~---------------~G~i~~~g~~~~~----~~~~~~~~~i~~v~QLSgGqkqrv~iA~ 93 (157)
T cd00267 33 PNGSGKSTLLRAIAGLLKPT---------------SGEILIDGKDIAK----LPLEELRRRIGYVPQLSGGQRQRVALAR 93 (157)
T ss_pred CCCCCHHHHHHHHHCCCCCC---------------CCEEEECCEECCC----CCHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 88999899999995884799---------------6289999999997----9999999406087668869999999999
Q ss_pred HCCCCCCEEEECCCCCCC
Q ss_conf 102457479971832234
Q gi|254780401|r 130 LLQEGVDIIIMDDGFHSA 147 (338)
Q Consensus 130 ~~~~~~diiIlDDGfQh~ 147 (338)
+.-.+++++|||.-+.+.
T Consensus 94 al~~~p~ililDEPtsgL 111 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred HHHCCCCEEEEECCCCCC
T ss_conf 997099999996987668
No 473
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=46.17 E-value=23 Score=16.16 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=14.2
Q ss_pred CCCEEEEEE-CCCCH--HHHHHHHHHHCCCCC
Q ss_conf 686389874-15535--789998874010000
Q gi|254780401|r 221 SGKKVLAFS-GIADT--EKFFTTVRQLGALIE 249 (338)
Q Consensus 221 ~~k~v~afs-GIa~P--~~F~~~L~~~g~~i~ 249 (338)
+.+++++++ |||-+ -...+.|.+.|.++.
T Consensus 96 ~~~~~llVaGGiG~APl~~la~~l~~~g~~v~ 127 (248)
T cd06219 96 NYGTVVFVGGGVGIAPIYPIAKALKEAGNRVI 127 (248)
T ss_pred CCCEEEEECCCEECCCHHHHHHHHHHCCCEEE
T ss_conf 89619998473522535999999998799589
No 474
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=46.16 E-value=21 Score=16.42 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-+...+...|...+.+++++.
T Consensus 8 SGAGtsTv~r~f~~IF~re~v~a~vIe 34 (277)
T cd02029 8 SGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 888478799999998720588528996
No 475
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=46.16 E-value=14 Score=17.68 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=29.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 889982300078887489999999985247315987604
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
||=.|+|.+.|-+| ..||+.+..+|+.|..|++-
T Consensus 16 ~VR~IsN~SSGk~G-----~aiA~~~~~~Ga~Vtli~g~ 49 (228)
T PRK06732 16 AVRGITNHSTGQLG-----KIIAETFLQAGHEVTLVTTK 49 (228)
T ss_pred CCCEECCCCHHHHH-----HHHHHHHHHCCCEEEEEECC
T ss_conf 84476767814999-----99999999789989999567
No 476
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=46.00 E-value=23 Score=16.14 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.6
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0078887489999999985247315987604
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.+|||| |+=...+..|-+.|-++.+++|-
T Consensus 33 V~G~tG--~vG~~~A~~lA~~Ga~v~lv~R~ 61 (194)
T cd01078 33 VLGGTG--PVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred EECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 985885--78999999999839979999587
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=45.99 E-value=16 Score=17.22 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|+|||-+..+|++++... .+++++
T Consensus 34 tGSGKTTll~al~~~i~~~-~rivti 58 (186)
T cd01130 34 TGSGKTTLLNALLAFIPPD-ERIITI 58 (186)
T ss_pred CCCCHHHHHHHHHHHCCCC-CCEEEE
T ss_conf 9998999999999613345-645984
No 478
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=45.97 E-value=23 Score=16.14 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 4338898899823000788874899999999852473159876045787
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
+...|.|.+-|+|- |+..++.+.|.+.|.+=.||+=||.+.
T Consensus 16 T~~~PKpLvpi~gk--------Pii~~ii~~l~~~gi~~iil~~gy~~~ 56 (253)
T cd02524 16 TELKPKPMVEIGGR--------PILWHIMKIYSHYGHNDFILCLGYKGH 56 (253)
T ss_pred HCCCCCCCEEECCE--------EHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 27998003189999--------899999999998699879995322511
No 479
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=45.94 E-value=23 Score=16.14 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=6.0
Q ss_pred CEEEEE---ECCCCHHHHH
Q ss_conf 638987---4155357899
Q gi|254780401|r 223 KKVLAF---SGIADTEKFF 238 (338)
Q Consensus 223 k~v~af---sGIa~P~~F~ 238 (338)
..++.+ ||||==..|.
T Consensus 266 ~PiIMIgpGTGiAPFr~Fl 284 (416)
T cd06204 266 TPVIMIGPGTGVAPFRGFI 284 (416)
T ss_pred CCEEEECCCCCHHHHHHHH
T ss_conf 8769981686618789999
No 480
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=45.90 E-value=19 Score=16.78 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=36.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHH-HHHHHH
Q ss_conf 0007888748999999998524731598760457877775587145678877042123322057634652012-256641
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRK-IGVQML 130 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~-~~~~~~ 130 (338)
+=--|+|||-+...|+..++.. -+-++.+ .+.+ +- +.|-..+-.|. -+...+
T Consensus 32 ~G~NGsGKTTl~~~l~G~~~~~---~G~i~~~--~~~~--i~--------------------y~~QLSgGqkqr~~la~a 84 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGELEPD---EGIVTWG--STVK--IG--------------------YFEQLSGGEKMRLALAKL 84 (144)
T ss_pred ECCCCCCHHHHHHHHHCCCCCC---CEEEEEC--CCCE--EE--------------------EEHHCCHHHHHHHHHHHH
T ss_conf 9899984999999984898898---5099999--9608--99--------------------870079999999999999
Q ss_pred CCCCCCEEEECCCCCCCC
Q ss_conf 024574799718322344
Q gi|254780401|r 131 LQEGVDIIIMDDGFHSAD 148 (338)
Q Consensus 131 ~~~~~diiIlDDGfQh~~ 148 (338)
.-.+++++|||.-+-+.-
T Consensus 85 l~~~p~iliLDEPt~~LD 102 (144)
T cd03221 85 LLENPNLLLLDEPTNHLD 102 (144)
T ss_pred HCCCCCEEEEECCCCCCC
T ss_conf 725998999957755589
No 481
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=45.79 E-value=16 Score=17.19 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 9999999999997404643388988998230007888748999999
Q gi|254780401|r 22 ISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 22 ls~iy~~~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
|+|.|+++..+-. . +-+..|+.+| ..|+|||-++-.|.
T Consensus 1 ~~~f~~~l~~l~~---~--~ke~~ililG---Ld~aGKTTil~~lk 38 (184)
T smart00178 1 FDWFYDILASLGL---W--NKHAKILFLG---LDNAGKTTLLHMLK 38 (184)
T ss_pred CCHHHHHHHHCCC---C--CCCCEEEEEC---CCCCCHHHHHHHHH
T ss_conf 9168999996274---5--6614799996---58898899999980
No 482
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=45.76 E-value=11 Score=18.40 Aligned_cols=18 Identities=56% Similarity=0.501 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|||||.++..+|+.|.-
T Consensus 47 rGtGKts~Ari~AkaLnC 64 (563)
T PRK06674 47 RGTGKTSIAKVFAKAVNC 64 (563)
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 986899999999998579
No 483
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=45.75 E-value=13 Score=17.79 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=24.5
Q ss_pred CCCCC-EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 38898-89982300078887489999999985247315987
Q gi|254780401|r 41 HAPIP-VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 41 ~~~~p-VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.+.-| |+|-=- .-|||||=+...||+.|-..|.+--.+
T Consensus 49 ~p~KpLVlSfHG--~tGtGKn~vs~liA~~Ly~~G~~S~~V 87 (127)
T pfam06309 49 KPRKPLVLSFHG--WTGTGKNFVAEIIADNLYRDGLRSPYV 87 (127)
T ss_pred CCCCCEEEEECC--CCCCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 999974887018--999879899999999987543478756
No 484
>PRK07263 consensus
Probab=45.75 E-value=23 Score=16.13 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf 888748999999998-52473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAV-IDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l-~~~g~~~~ils 81 (338)
|.|||-+++-+|... .+.|..|++.|
T Consensus 213 smGKTa~alnia~~iA~~~~~~V~~fS 239 (453)
T PRK07263 213 AVGKTAFVLNIAQNVGTKQKKTVAIFS 239 (453)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 884789999999999985598289992
No 485
>PRK13229 consensus
Probab=45.68 E-value=13 Score=17.96 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-E-EECHHHHHHCCCCCCCCHHHHCCEEEEEEEE
Q ss_conf 3578999887401000012214332348989999999975647987-9-9854663438233344111220517887698
Q gi|254780401|r 233 DTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI-L-VTTAKDAMRLHKRPGRAEEIFAKSMVIEVDI 310 (338)
Q Consensus 233 ~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~-i-iTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~ 310 (338)
+|+.|...++.+|....+.+.+-|. ..|++ .|+..|.. | ||+-=.-..+. ......
T Consensus 152 ~P~~~~~al~~l~~~p~~~l~VGDs----~~Di~----aA~~AGi~~i~v~~G~~~~~l~--------------~~~pd~ 209 (234)
T PRK13229 152 DPRHLTETIARAGGDRDRALMVGDS----RTDID----TAKAAGIPVVAVDFGYSDVPVQ--------------HLEPSR 209 (234)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEECC----HHHHH----HHHHCCCEEEEECCCCCCCCHH--------------HCCCCE
T ss_conf 8999999999819996367999268----98999----9999699089986899966576--------------769999
Q ss_pred EECCHHHHHHHHHHHH
Q ss_conf 9578789999999999
Q gi|254780401|r 311 VFENPDDLTNLVEMTV 326 (338)
Q Consensus 311 ~~~~~~~l~~~l~~~i 326 (338)
.+++-++|...|.+.+
T Consensus 210 ii~~~~EL~~~l~e~~ 225 (234)
T PRK13229 210 VISHFDELTPELAEDL 225 (234)
T ss_pred EECCHHHHHHHHHHHH
T ss_conf 9899999899999999
No 486
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=45.28 E-value=22 Score=16.23 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=29.0
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 00788874899999999852473159876045787
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.+||-| .+|-.|++.|.++|..|.|++-.|+.-
T Consensus 14 kvGGLg--~vv~~L~~aLa~~Gh~V~Vi~P~y~~~ 46 (476)
T cd03791 14 KTGGLG--DVVGALPKALAKLGHDVRVIMPKYGRI 46 (476)
T ss_pred CCCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 626799--999999999997799699995798661
No 487
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=45.18 E-value=24 Score=16.06 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=49.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE----EEECCCCCHHHHCC-HHHHHHH---------CC----
Q ss_conf 078887489999999985247315987604578777755----87145678877042-1233220---------57----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISF----RVDLEKHSAYDVGD-EPLLLAR---------RA---- 115 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~----~v~~~~~~~~~vGD-Ep~lla~---------~~---- 115 (338)
-||-||..++.-++..|.+.|++|-++-=-=++.+.... ..-+--+...+-|. |.+.+.. +|
T Consensus 9 KGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~gv~CVEsG 88 (278)
T COG1348 9 KGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGGVKCVESG 88 (278)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCCCCEEEEECC
T ss_conf 78767312677899999972981799747987632777747866656999998618644588778212067853774259
Q ss_pred ---CCCCCCCH--HHHHHHHCCCC-----CCEEEEC
Q ss_conf ---63465201--22566410245-----7479971
Q gi|254780401|r 116 ---VTIVTSDR--KIGVQMLLQEG-----VDIIIMD 141 (338)
Q Consensus 116 ---pv~V~~~R--~~~~~~~~~~~-----~diiIlD 141 (338)
|-+=|.-| ..++..+.+.+ .|+|+.|
T Consensus 89 GPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyD 124 (278)
T COG1348 89 GPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYD 124 (278)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 989998846511999999999818730128789995
No 488
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=45.11 E-value=24 Score=16.05 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=36.9
Q ss_pred ECCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEC
Q ss_conf 41553578999887401000012-214332348989999999975647987-9985
Q gi|254780401|r 229 SGIADTEKFFTTVRQLGALIEQC-YSFGDHAHLSDKKIAYLLDQAQQKGLI-LVTT 282 (338)
Q Consensus 229 sGIa~P~~F~~~L~~~g~~i~~~-~~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTT 282 (338)
.|.+|=++-.+-++++|..++-. -.|++- |+++++.+.+.+++.+.. .++|
T Consensus 355 ~G~~NL~~Hi~N~~~fg~pvVVAIN~F~~D---t~~Ei~~i~~~~~~~g~~~~~s~ 407 (556)
T PRK13505 355 KGLANLERHIENIKKFGVPVVVAINKFVTD---TDAEIAAVKELCEELGVEVALTE 407 (556)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 888899999999997199769995478998---89999999999998699899940
No 489
>PRK09581 pleD response regulator PleD; Reviewed
Probab=44.98 E-value=13 Score=17.78 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=25.1
Q ss_pred EEEECCCCHHHHHHHHHHH-------C-------CCCCCCCCCCCCCCCCHHH--HHHHHH
Q ss_conf 9874155357899988740-------1-------0000122143323489899--999999
Q gi|254780401|r 226 LAFSGIADTEKFFTTVRQL-------G-------ALIEQCYSFGDHAHLSDKK--IAYLLD 270 (338)
Q Consensus 226 ~afsGIa~P~~F~~~L~~~-------g-------~~i~~~~~fpDHh~ys~~d--l~~i~~ 270 (338)
=..||+.|=..|.+.|++. | +.+..+....|.|-....| |..+.+
T Consensus 295 D~LTgL~NR~~f~~~L~~~~~~a~r~~~~~all~lDlD~FK~INDt~GH~~GD~lL~~vA~ 355 (457)
T PRK09581 295 DGLTGLHNRRYFDMHLKQLIERANERGKPLSLMMLDIDHFKQVNDTYGHDAGDEVLREFAK 355 (457)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHHH
T ss_conf 8766713199999999999999997599389999988774288876695377999999999
No 490
>KOG2371 consensus
Probab=44.92 E-value=24 Score=16.03 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC------HHHHHHCC
Q ss_conf 535789998874010000122143323489899999999756479879985------46634382
Q gi|254780401|r 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT------AKDAMRLH 290 (338)
Q Consensus 232 a~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTT------EKD~VKL~ 290 (338)
-|-....+...+.|+..+..-.-+|| ..++++.+.++.+....|||| +||+.|..
T Consensus 215 ~n~s~l~~l~~~~Gf~~i~~gvv~D~----~~~i~e~L~e~~~~aDvIlTtGGvsm~~~D~~~~a 275 (411)
T KOG2371 215 SNRSQLLELFQEHGFTAIDAGVVPDD----VTRIKEKLREASSFADVILTTGGVSMGPRDVTKEA 275 (411)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCC----HHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHH
T ss_conf 56699999998719652233003673----88999999986531118995277543601211667
No 491
>PRK10646 putative ATPase; Provisional
Probab=44.89 E-value=9.9 Score=18.72 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 38898899823000788874899999999852
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
+...-|.-.|++ |+|||-+|..+++.|-.
T Consensus 26 ~~g~vi~L~G~L---GaGKTtf~r~i~~~lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDL---GAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHCCC
T ss_conf 999799998888---78999999999998499
No 492
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=44.85 E-value=20 Score=16.59 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=8.4
Q ss_pred CEEEEEE-CCCCHHHHHHHHHH
Q ss_conf 6389874-15535789998874
Q gi|254780401|r 223 KKVLAFS-GIADTEKFFTTVRQ 243 (338)
Q Consensus 223 k~v~afs-GIa~P~~F~~~L~~ 243 (338)
++++.++ |+|= ..|.++|+.
T Consensus 105 ~~lvliagG~GI-tP~~s~l~~ 125 (234)
T cd06183 105 KHIGMIAGGTGI-TPMLQLIRA 125 (234)
T ss_pred CEEEEEECCCCH-HHHHHHHHH
T ss_conf 659999746056-289999999
No 493
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=44.78 E-value=12 Score=18.11 Aligned_cols=15 Identities=60% Similarity=0.846 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 888748999999998
Q gi|254780401|r 56 GTGKTPTALAIAKAV 70 (338)
Q Consensus 56 GtGKTP~v~~l~~~l 70 (338)
|||||-+++.+++.|
T Consensus 60 GTGKTAlA~aiakeL 74 (395)
T pfam06068 60 GTGKTALAIAISKEL 74 (395)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 988899999999974
No 494
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=44.70 E-value=24 Score=16.01 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCEEEECCEEECCCC---CCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 988998230007888---7489999999985247315987604578777
Q gi|254780401|r 44 IPVICVGGFVMGGTG---KTPTALAIAKAVIDKNLKPGFLSRGYGRKSR 89 (338)
Q Consensus 44 ~pVI~VGNitvGGtG---KTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~ 89 (338)
|-|+|+|.=.+=|.| ...-+..|++.|.+.+..+-++-+|.+|.+.
T Consensus 1 vrIv~lGDSiT~G~g~~~~~g~~~~l~~~l~~~~~~~~viN~Gi~G~tt 49 (177)
T cd01822 1 VTILALGDSLTAGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTT 49 (177)
T ss_pred CEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCH
T ss_conf 9999980045207399989986999999999519992899788178866
No 495
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=44.66 E-value=24 Score=16.01 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999999852473159876045787777558714567887704212332205763465201225664102457479971
Q gi|254780401|r 62 TALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 62 ~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
+...|...|+..||.|...+-| .+|...+.+..+|+||||
T Consensus 15 l~~~l~~~L~~~g~~v~~~~~~----------------------------------------~~al~~~~~~~~DlvilD 54 (229)
T PRK11083 15 IADTLVYALQSEGFTVEWFERG----------------------------------------LPALDKLRQQPPDLVILD 54 (229)
T ss_pred HHHHHHHHHHHCCCEEEEECCH----------------------------------------HHHHHHHHHCCCCEEEEC
T ss_conf 9999999999889999998999----------------------------------------999999971899899973
Q ss_pred CCCCC----------CCCCCEEEEEEECCCC
Q ss_conf 83223----------4412306999961843
Q gi|254780401|r 142 DGFHS----------ADLQADFSLIVVNSHR 162 (338)
Q Consensus 142 DGfQh----------~~l~rdl~Ivl~d~~~ 162 (338)
-++.+ ++...+.-|+++.+..
T Consensus 55 i~LP~~~G~~l~~~iR~~~~~~pII~lta~~ 85 (229)
T PRK11083 55 VGLPDISGFELCRQLRAFHPALPVIFLTARS 85 (229)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8899987688999999708997299983678
No 496
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=44.61 E-value=24 Score=16.00 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCCCCEEEECCEEECCCC-------CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH
Q ss_conf 388988998230007888-------7489999999985247315987604578777755871456788770421233220
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTG-------KTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR 113 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtG-------KTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~ 113 (338)
..++|||++|+-.-+... =.-....++++|.++|++-..+-.|--.......+...-.....+.|.+......
T Consensus 77 ~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~ 156 (264)
T cd01537 77 KAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQ 156 (264)
T ss_pred HCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 75997999856678888871999777999999999998629862453048877706999999999999977999853799
Q ss_pred CCCCCCCCCHHHHHHHHCCC-CCC-EEEECCCC----------CCCCCCCEEEEEEECCC
Q ss_conf 57634652012256641024-574-79971832----------23441230699996184
Q gi|254780401|r 114 RAVTIVTSDRKIGVQMLLQE-GVD-IIIMDDGF----------HSADLQADFSLIVVNSH 161 (338)
Q Consensus 114 ~~pv~V~~~R~~~~~~~~~~-~~d-iiIlDDGf----------Qh~~l~rdl~Ivl~d~~ 161 (338)
.+..-...-+......+.+. ++| ++..+|.+ ..+++..|+.|+.+|..
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~dai~~~~d~~A~gv~~al~~~g~~ip~di~ivg~d~~ 216 (264)
T cd01537 157 EGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGT 216 (264)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 579998999999999985089976999898699999999999749999998399999974
No 497
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.58 E-value=24 Score=16.00 Aligned_cols=212 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH-CCCCCCCCCHHHHHHHHCCCC
Q ss_conf 8887489999999985247315987604578777755871456788770421233220-576346520122566410245
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR-RAVTIVTSDRKIGVQMLLQEG 134 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~-~~pv~V~~~R~~~~~~~~~~~ 134 (338)
|.|--==++.||+.|+++|+.+.+++++ ....-...+.++..-... ...---..+.......+.+.+
T Consensus 14 G~GH~~RclaLA~~l~~~g~~v~f~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (280)
T TIGR03590 14 GLGHVMRCLTLARELRKRGAEVAFACKT------------LPGDLIDLILSAGFPVYVLPDTSSWQDDALELINLLEKEK 81 (280)
T ss_pred EHHHHHHHHHHHHHHHHCCCEEEEEEEC------------CCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCC
T ss_conf 3208999999999999889949999927------------9588999999759817981675652012999999997379
Q ss_pred CCEEEECC-----CCCCCCCCCEEEEEEEC--CCCCCCCCCCCCCHHHHHCCH-HHHHHHHHHHHCCCCHHHHHHHCCCC
Q ss_conf 74799718-----32234412306999961--843356655376136521002-55665145442044124577631350
Q gi|254780401|r 135 VDIIIMDD-----GFHSADLQADFSLIVVN--SHRGLGNGLVFPAGPLRVPLS-RQLSYVDAILYVGNKKNVISSIKNKS 206 (338)
Q Consensus 135 ~diiIlDD-----GfQh~~l~rdl~Ivl~d--~~~~~gn~~llPaGpLREp~~-~~l~rad~vi~~~~~~~~~~~~~~~~ 206 (338)
+|++|.|+ .++..-=.....++++| ..+++--+.++..+|..+... ..+...+.-++.|..=.....
T Consensus 82 ~d~vIiD~y~~~~~~~~~lk~~~~~~i~iDD~~~~~~~~d~vin~~~~~~~~~y~~~~~~~~~~l~G~~Y~~lr~----- 156 (280)
T TIGR03590 82 FDILIVDHYALDADWEKLIKHFGRKLLVIDDLADRPHDCDLLLDQNPGADALDYQGLVPANCRLLLGPSYALLRE----- 156 (280)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCEEEECCCCCCCCH-----
T ss_conf 799999259999799999998398399993676546561425414544475663644886766986575343578-----
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEE
Q ss_conf 11122220132111686389874155357----899988740100001221433234898999999997564798-7998
Q gi|254780401|r 207 VYFAKLKPRLTFDLSGKKVLAFSGIADTE----KFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVT 281 (338)
Q Consensus 207 i~~~~~~~~~~~~l~~k~v~afsGIa~P~----~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiT 281 (338)
.+...++.....-.-+++++.-|=++|. ++.+.|.+....+.-.+.....+.. .+.+.+.++.... .++.
T Consensus 157 -~F~~~~~~~~~~~~~~~Ili~~GGsD~~~lt~~il~~l~~~~~~~~i~vvig~~~~~----~~~i~~~~~~~~~~~~~~ 231 (280)
T TIGR03590 157 -EFYQLRTANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPN----LDELKKFAKEYPNIILFI 231 (280)
T ss_pred -HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHHHCCCEEEEC
T ss_conf -887630322103655328999778770008999999998516685679998679876----699999997289969965
Q ss_pred CHHHHHHC
Q ss_conf 54663438
Q gi|254780401|r 282 TAKDAMRL 289 (338)
Q Consensus 282 TEKD~VKL 289 (338)
--+|..++
T Consensus 232 ~~~~m~~~ 239 (280)
T TIGR03590 232 DVENMAEL 239 (280)
T ss_pred CHHHHHHH
T ss_conf 98899999
No 498
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=44.52 E-value=23 Score=16.13 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCCH-HHHHHHHHHHHCCCCEEEEE
Q ss_conf 888748-99999999852473159876
Q gi|254780401|r 56 GTGKTP-TALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP-~v~~l~~~l~~~g~~~~ils 81 (338)
|+|||- +..||...|......+-|+|
T Consensus 59 GSGKTTALi~wL~~~L~~~d~SvLVVS 85 (829)
T pfam02399 59 GSGKTTALIEWLRAALDSPDTSVLVVS 85 (829)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 887189999999997378665499997
No 499
>PRK09191 two-component response regulator; Provisional
Probab=44.51 E-value=16 Score=17.24 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=0.0
Q ss_pred HCCHHHHHHH---------CCCCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 0421233220---------5763465201225664102457479971
Q gi|254780401|r 104 VGDEPLLLAR---------RAVTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 104 vGDEp~lla~---------~~pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|-|||+.-.. +..+-+..+..+|...+.+..+|++++|
T Consensus 143 VEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~D 189 (261)
T PRK09191 143 IEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILAD 189 (261)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 85859999999999998799678762789999999742598989995
No 500
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.36 E-value=24 Score=15.97 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||||+. --.+++.|.++|+.+.+++|.
T Consensus 4 lV~GatG~~--G~~~~~~L~~~~~~v~~~~r~ 33 (275)
T COG0702 4 LVTGATGFV--GGAVVRELLARGHEVRAAVRN 33 (275)
T ss_pred EEECCCCCH--HHHHHHHHHHCCCEEEEECCC
T ss_conf 998677757--999999999759869997368
Done!