HHsearch alignment for GI: 254780401 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.34 E-value=0.013 Score=39.23 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=31.3
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
T Consensus 2 ~vi~~~~~-KGG~GKtT~a~~la~~~~~~g~~V~liD 37 (231)
T pfam07015 2 QLITFCSF-KGGAGKTTALMGLCSALASDGKRVALFE 37 (231)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 37999617-9986599999999999996899599996