HHsearch alignment of GI: 254780401 and MMDB domain: 1yrb_A_
>1yrb_A (A:) ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi}
Probab=95.56 E-value=0.014 Score=38.60 Aligned_cols=154 Identities=8% Similarity=-0.074 Sum_probs=77.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC
Q ss_conf 38898899823000788874899999999852473159876045787777558714567887704212332205763465
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~ 120 (338)
..+.|+|+|. =-.|+|||-++..|+..+...+....+.-++.....................+.+.......+.....
T Consensus 11 ~~~~~~i~i~--G~~gaGKTTl~~~Ll~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 88 (262)
T 1yrb_A 11 GMASMIVVFV--GTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESY 88 (262)
T ss_dssp TCCCEEEEEE--CSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCEEEEE--ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHEECCCCEEEEH
T ss_conf 8889889999--38998399999999998700988999964777536787734137777641100244310368713002
Q ss_pred CCHHH------HHHHHCCCCCCEEEECCCC-------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 20122------5664102457479971832-------------2344123069999618433566553761365210025
Q gi|254780401|r 121 SDRKI------GVQMLLQEGVDIIIMDDGF-------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 121 ~~R~~------~~~~~~~~~~diiIlDDGf-------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
..... +.......+.|+++.|--= ....+..+.-|+++|+.++---....+.+..++-...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~iid~pG~~~~~~~~~~~~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 76888899999999863167642303543204578999988899887436559998436545672378889999999887
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 566514544204412
Q gi|254780401|r 182 QLSYVDAILYVGNKK 196 (338)
Q Consensus 182 ~l~rad~vi~~~~~~ 196 (338)
.++-++++++||.+.
T Consensus 169 ~i~~~~iiviNK~D~ 183 (262)
T 1yrb_A 169 RLGATTIPALNKVDL 183 (262)
T ss_dssp HHTSCEEEEECCGGG
T ss_pred HCCCCCEEEECCCCC
T ss_conf 537980577616554