HHsearch alignment of GI: 254780401 and MMDB domain: 1yrb_A_

>1yrb_A (A:) ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi}
Probab=95.56  E-value=0.014  Score=38.60  Aligned_cols=154  Identities=8%  Similarity=-0.074  Sum_probs=77.7

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC
Q ss_conf             38898899823000788874899999999852473159876045787777558714567887704212332205763465
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT  120 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~  120 (338)
                      ..+.|+|+|.  =-.|+|||-++..|+..+...+....+.-++.....................+.+.......+.....
T Consensus        11 ~~~~~~i~i~--G~~gaGKTTl~~~Ll~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   88 (262)
T 1yrb_A           11 GMASMIVVFV--GTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESY   88 (262)
T ss_dssp             TCCCEEEEEE--CSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEE--ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHEECCCCEEEEH
T ss_conf             8889889999--38998399999999998700988999964777536787734137777641100244310368713002


Q ss_pred             CCHHH------HHHHHCCCCCCEEEECCCC-------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf             20122------5664102457479971832-------------2344123069999618433566553761365210025
Q gi|254780401|r  121 SDRKI------GVQMLLQEGVDIIIMDDGF-------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR  181 (338)
Q Consensus       121 ~~R~~------~~~~~~~~~~diiIlDDGf-------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~  181 (338)
                      .....      +.......+.|+++.|--=             ....+..+.-|+++|+.++---....+.+..++-...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~iid~pG~~~~~~~~~~~~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~~~~~~~  168 (262)
T 1yrb_A           89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL  168 (262)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             76888899999999863167642303543204578999988899887436559998436545672378889999999887


Q ss_pred             HHHHHHHHHHCCCCH
Q ss_conf             566514544204412
Q gi|254780401|r  182 QLSYVDAILYVGNKK  196 (338)
Q Consensus       182 ~l~rad~vi~~~~~~  196 (338)
                      .++-++++++||.+.
T Consensus       169 ~i~~~~iiviNK~D~  183 (262)
T 1yrb_A          169 RLGATTIPALNKVDL  183 (262)
T ss_dssp             HHTSCEEEEECCGGG
T ss_pred             HCCCCCEEEECCCCC
T ss_conf             537980577616554