HHsearch alignment of GI: 254780401 and MMDB domain: 2npi_A_118-328

>2npi_A (A:118-328) Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.05  Score=34.62  Aligned_cols=42  Identities=21%  Similarity=0.270  Sum_probs=32.2

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCC
Q ss_conf             38898899823000788874899999999-8524731598760457
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKA-VIDKNLKPGFLSRGYG   85 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~-l~~~g~~~~ilsRGYg   85 (338)
                      +.+.-|+.+|.   ||+|||-++..|+++ |++.|++|.++-==-+
T Consensus        19 ~~~~~ilv~G~---gGvGKTT~~~~La~~~l~~~g~~vl~vD~D~~   61 (211)
T 2npi_A           19 FEGPRVVIVGG---SQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ   61 (211)
T ss_dssp             SSCCCEEEEES---TTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred             CCCCEEEEECC---CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             25988999899---98788999999999998506982399976789