Query         gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 338
No_of_seqs    164 out of 1985
Neff          6.7 
Searched_HMMs 33803
Date          Wed Jun  1 12:45:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780401.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1xjc_A MOBB protein homolog;   96.7  0.0057 1.7E-07   41.3   6.4   43   44-88      4-46  (169)
  2 >2www_A Methylmalonic aciduria  96.3  0.0056 1.6E-07   41.4   4.3  147   40-198    70-226 (262)
  3 >2px0_A Flagellar biosynthesis  96.0   0.024   7E-07   36.9   6.6   79   46-143    10-93  (187)
  4 >1np6_A Molybdopterin-guanine   96.0   0.025 7.5E-07   36.7   6.5   43   41-85      3-45  (174)
  5 >1ihu_A Arsenical pump-driving  95.7   0.013 3.7E-07   38.8   3.9   44   43-87      6-49  (303)
  6 >1yrb_A ATP(GTP)binding protei  95.6   0.014   4E-07   38.6   3.8  154   41-196    11-183 (262)
  7 >1vma_A Cell division protein   95.5   0.025 7.3E-07   36.8   5.0   79   46-143   107-195 (306)
  8 >1nij_A Hypothetical protein Y  95.3  0.0053 1.6E-07   41.5   1.0  137   43-196     3-162 (204)
  9 >1hyq_A MIND, cell division in  95.3    0.02 5.9E-07   37.4   3.9   39   45-84      3-41  (263)
 10 >3c8u_A Fructokinase; YP_61236  95.2    0.03 8.7E-07   36.2   4.5   34   46-81     24-57  (146)
 11 >3fgn_A Dethiobiotin synthetas  95.0    0.03 8.9E-07   36.2   4.1   42   39-81     21-62  (251)
 12 >3cwq_A Para family chromosome  95.0   0.027 8.1E-07   36.4   3.9   36   45-81      1-36  (209)
 13 >1qzx_A SRP54, signal recognit  94.9   0.027   8E-07   36.5   3.6   82   44-144     7-99  (193)
 14 >2f1r_A Molybdopterin-guanine   94.8   0.025 7.3E-07   36.8   3.2   31   53-83      9-39  (121)
 15 >1odf_A YGR205W, hypothetical   94.8    0.11 3.1E-06   32.3   6.4   34   48-81     33-69  (211)
 16 >2oze_A ORF delta'; para, walk  94.8   0.023 6.9E-07   36.9   3.0   40   42-82     34-73  (298)
 17 >2npi_A Protein CLP1; CLP1-PCF  94.7    0.05 1.5E-06   34.6   4.6   42   41-85     19-61  (211)
 18 >2ph1_A Nucleotide-binding pro  94.6   0.033 9.8E-07   35.9   3.4   45   39-84     13-57  (228)
 19 >1j8m_F SRP54, signal recognit  94.6   0.042 1.2E-06   35.1   3.9   28   54-81     15-42  (193)
 20 >3iqw_A Tail-anchored protein   94.5    0.03 8.8E-07   36.2   3.1   43   43-86     14-56  (334)
 21 >2woo_A ATPase GET3; tail-anch  94.5   0.034   1E-06   35.8   3.3   43   43-86     17-59  (329)
 22 >1cp2_A CP2, nitrogenase iron   94.4   0.034   1E-06   35.8   3.2   34   54-87      9-42  (269)
 23 >3e1s_A Exodeoxyribonuclease V  94.4    0.24 7.2E-06   29.7   7.5   27   55-81     64-90  (215)
 24 >2qmo_A Dethiobiotin synthetas  94.3   0.034   1E-06   35.8   2.9   37   46-83      3-39  (220)
 25 >1wcv_1 SOJ, segregation prote  94.3   0.038 1.1E-06   35.4   3.2   43   43-86      5-47  (257)
 26 >2afh_E Nitrogenase iron prote  94.3   0.035   1E-06   35.7   3.0   32   54-85     10-41  (289)
 27 >3end_A Light-independent prot  94.3   0.035   1E-06   35.7   3.0   41   45-87     42-82  (307)
 28 >1byi_A Dethiobiotin synthase;  94.2   0.036 1.1E-06   35.6   2.9   37   45-82      2-38  (224)
 29 >1g3q_A MIND ATPase, cell divi  94.2   0.057 1.7E-06   34.2   4.0   38   45-83      3-40  (237)
 30 >1ihu_A Arsenical pump-driving  94.1   0.038 1.1E-06   35.4   3.0   42   43-85     22-63  (286)
 31 >1a7j_A Phosphoribulokinase; t  94.0   0.074 2.2E-06   33.4   4.3   38   44-83      5-42  (290)
 32 >3fkq_A NTRC-like two-domain p  94.0   0.037 1.1E-06   35.6   2.7   42   44-86      5-46  (235)
 33 >3kjh_A CO dehydrogenase/acety  93.9   0.026 7.6E-07   36.6   1.7   30   54-83      8-37  (254)
 34 >3igf_A ALL4481 protein; two-d  93.8   0.032 9.4E-07   36.0   2.1   36   45-81      2-37  (297)
 35 >3ea0_A ATPase, para family; a  93.5   0.073 2.1E-06   33.4   3.5   40   44-84      4-44  (245)
 36 >1w78_A FOLC bifunctional prot  93.4    0.68   2E-05   26.5   8.8  131   38-179    43-184 (286)
 37 >2g0t_A Conserved hypothetical  93.3    0.18 5.3E-06   30.6   5.2   46   37-83      3-48  (191)
 38 >3ez2_A Plasmid partition prot  93.0   0.073 2.2E-06   33.4   2.8   41   44-85      6-52  (296)
 39 >3ez9_A Para; DNA binding, win  92.8    0.11 3.2E-06   32.2   3.5   46   42-88      4-55  (298)
 40 >3cio_A ETK, tyrosine-protein   92.8    0.16 4.6E-06   31.1   4.3   41   41-82    101-141 (299)
 41 >2woj_A ATPase GET3; tail-anch  92.4    0.11 3.2E-06   32.3   3.1   43   43-86     16-60  (354)
 42 >1bif_A 6-phosphofructo-2-kina  92.4   0.049 1.5E-06   34.6   1.2   35   46-83     42-76  (231)
 43 >2axn_A 6-phosphofructo-2-kina  92.3   0.046 1.4E-06   34.9   1.0   38   44-84     10-47  (218)
 44 >2j9r_A Thymidine kinase; TK1,  92.3    0.37 1.1E-05   28.4   5.7   35   46-83     31-65  (167)
 45 >3io3_A DEHA2D07832P; chaperon  91.7    0.15 4.4E-06   31.2   3.1   43   43-86     16-60  (348)
 46 >1zu4_A FTSY; GTPase, signal r  91.5    0.16 4.8E-06   30.9   3.2   32   50-81     13-44  (203)
 47 >3k9g_A PF-32 protein; ssgcid,  91.5    0.24   7E-06   29.8   3.9   44   39-83     22-65  (267)
 48 >2b8t_A Thymidine kinase; deox  90.9    0.58 1.7E-05   27.0   5.4   26   56-81     22-47  (155)
 49 >3bfv_A CAPA1, CAPB2, membrane  90.7     0.2 6.1E-06   30.2   3.0   42   40-82     78-119 (271)
 50 >3bos_A Putative DNA replicati  90.4    0.67   2E-05   26.6   5.4   36   43-81     52-87  (175)
 51 >1j6u_A UDP-N-acetylmuramate-a  89.7    0.76 2.2E-05   26.2   5.2   67   45-116     2-69  (195)
 52 >3eag_A UDP-N-acetylmuramate:L  89.6    0.51 1.5E-05   27.4   4.3   43   43-89      2-44  (221)
 53 >1rj9_A FTSY, signal recogniti  89.3     0.3   9E-06   29.0   3.0   31   53-83     14-44  (198)
 54 >2get_A Pantothenate kinase; h  88.8    0.37 1.1E-05   28.4   3.1   29   53-81     97-127 (248)
 55 >1o5z_A Folylpolyglutamate syn  88.2     2.1 6.1E-05   23.1   8.5  119   35-157    43-176 (304)
 56 >3e70_C DPA, signal recognitio  88.1    0.46 1.4E-05   27.8   3.2   29   54-82     23-51  (200)
 57 >3hn7_A UDP-N-acetylmuramate-L  87.1    0.71 2.1E-05   26.4   3.7   39   43-85      2-40  (255)
 58 >1ls1_A Signal recognition par  87.0    0.54 1.6E-05   27.2   3.0   35   46-83      9-43  (185)
 59 >2z4s_A Chromosomal replicatio  86.3    0.47 1.4E-05   27.7   2.4   31   43-76    130-160 (262)
 60 >3cmw_A Protein RECA, recombin  86.1    0.58 1.7E-05   27.0   2.8   27   55-81     32-58  (274)
 61 >3e2i_A Thymidine kinase; Zn-b  86.1     1.8 5.4E-05   23.5   5.3   72   55-143    37-110 (167)
 62 >3cmw_A Protein RECA, recombin  85.8    0.61 1.8E-05   26.9   2.8   27   55-81     36-62  (279)
 63 >1nks_A Adenylate kinase; ther  85.3    0.62 1.8E-05   26.8   2.6   32   55-86     10-41  (194)
 64 >3cmw_A Protein RECA, recombin  84.9    0.76 2.2E-05   26.2   2.9   27   55-81     43-69  (289)
 65 >2wtz_A UDP-N-acetylmuramoyl-L  84.8     2.7 8.1E-05   22.3   5.7   43   37-83     12-54  (241)
 66 >2am1_A SP protein, UDP-N-acet  84.8    0.71 2.1E-05   26.4   2.7   40   42-86     17-56  (224)
 67 >2ocp_A DGK, deoxyguanosine ki  83.9    0.41 1.2E-05   28.1   1.2   40   46-88      4-44  (241)
 68 >2eyu_A Twitching motility pro  83.6     3.4  0.0001   21.6   5.8   35   49-83     25-63  (261)
 69 >1nn5_A Similar to deoxythymid  83.5     1.9 5.7E-05   23.3   4.5   41   44-87     10-50  (215)
 70 >3dmq_A RNA polymerase-associa  83.3    0.77 2.3E-05   26.2   2.4   27   55-81     30-58  (302)
 71 >3do6_A Formate--tetrahydrofol  82.9     1.9 5.6E-05   23.4   4.3  196   41-282    40-268 (295)
 72 >3b9q_A Chloroplast SRP recept  82.9       1   3E-05   25.3   2.9   35   46-83     11-45  (200)
 73 >2og2_A Putative signal recogn  82.9       1   3E-05   25.3   2.9   35   46-83     11-45  (200)
 74 >3cmu_A Protein RECA, recombin  82.8    0.86 2.5E-05   25.8   2.5   27   55-81     43-69  (286)
 75 >3cmu_A Protein RECA, recombin  82.7     2.5 7.5E-05   22.5   4.9   27   55-81     36-62  (281)
 76 >2gza_A Type IV secretion syst  82.4     3.8 0.00011   21.3   5.6   29   55-84     41-69  (218)
 77 >1wrb_A DJVLGB; RNA helicase,   82.4     1.6 4.6E-05   24.0   3.6  103   55-160    69-182 (253)
 78 >1xp8_A RECA protein, recombin  82.2     1.2 3.6E-05   24.7   3.1   27   55-81     13-39  (215)
 79 >3cmw_A Protein RECA, recombin  81.3     1.2 3.6E-05   24.8   2.8   27   55-81     36-62  (279)
 80 >1w36_D RECD, exodeoxyribonucl  81.3     1.3 3.8E-05   24.6   2.9   28   54-81     62-93  (263)
 81 >2w58_A DNAI, primosome compon  81.2     1.4 4.1E-05   24.3   3.1   36   43-81     54-89  (202)
 82 >3cmu_A Protein RECA, recombin  81.2     1.1 3.2E-05   25.1   2.5   27   55-81     36-62  (278)
 83 >1kht_A Adenylate kinase; phos  81.1       1   3E-05   25.3   2.4   32   54-85     11-42  (192)
 84 >4tmk_A Protein (thymidylate k  81.0     2.6 7.8E-05   22.4   4.4   40   45-87      5-44  (213)
 85 >2jfg_A UDP-N-acetylmuramoylal  81.0     2.9 8.5E-05   22.1   4.6   35   44-82      2-36  (197)
 86 >2i5e_A Hypothetical protein M  80.8     4.3 0.00013   20.9   6.5   38   52-89      9-62  (170)
 87 >1osn_A Thymidine kinase, VZV-  80.7     1.9 5.6E-05   23.4   3.6   35   46-83     15-49  (341)
 88 >1jbw_A Folylpolyglutamate syn  80.6     4.3 0.00013   20.8   7.2  115   38-157    33-164 (297)
 89 >3cmu_A Protein RECA, recombin  80.5     1.2 3.6E-05   24.7   2.6   27   55-81     36-62  (278)
 90 >1sxj_A Activator 1 95 kDa sub  80.3     2.8 8.4E-05   22.1   4.4   34   42-81     76-109 (208)
 91 >3fe2_A Probable ATP-dependent  80.0     2.5 7.5E-05   22.5   4.1   99   53-159    73-183 (242)
 92 >1p3d_A UDP-N-acetylmuramate--  79.6     1.9 5.5E-05   23.4   3.3   38   45-86      3-40  (209)
 93 >1e8c_A UDP-N-acetylmuramoylal  78.6       5 0.00015   20.4   5.9   44   36-83     10-53  (247)
 94 >1xx6_A Thymidine kinase; X-RA  77.4     5.4 0.00016   20.2   5.6   27   55-81     17-43  (147)
 95 >3lk7_A UDP-N-acetylmuramoylal  77.0     3.6 0.00011   21.4   4.1   34   44-81      1-34  (199)
 96 >1p9r_A General secretion path  76.8     4.4 0.00013   20.8   4.5   26   55-80     30-55  (272)
 97 >2oap_1 GSPE-2, type II secret  76.6     3.3 9.8E-05   21.7   3.8   29   55-84      9-37  (186)
 98 >1eg7_A Formyltetrahydrofolate  76.6     4.3 0.00013   20.8   4.4  187   42-278    55-276 (308)
 99 >2qy9_A Cell division protein   76.3     2.2 6.6E-05   22.9   2.9   30   54-83     15-44  (198)
100 >2eyq_A TRCF, transcription-re  76.0     5.8 0.00017   19.9   5.5   97   55-165    52-157 (202)
101 >2qgz_A Helicase loader, putat  75.9       2   6E-05   23.2   2.6   36   41-79    150-185 (308)
102 >2i3b_A HCR-ntpase, human canc  75.8     2.1 6.1E-05   23.1   2.6   29   55-83     10-38  (189)
103 >2pk3_A GDP-6-deoxy-D-LYXO-4-h  75.3     6.1 0.00018   19.8   6.1   43   52-96     16-58  (321)
104 >2f00_A UDP-N-acetylmuramate--  75.3     2.9 8.7E-05   22.0   3.3   34   53-86      7-40  (209)
105 >2zr9_A Protein RECA, recombin  75.1     2.7 8.1E-05   22.2   3.1   27   55-81     36-62  (237)
106 >2pln_A HP1043, response regul  74.8     5.5 0.00016   20.1   4.6   48  115-162    43-96  (137)
107 >2jjm_A Glycosyl transferase,   74.7       1 3.1E-05   25.2   0.8  142   41-194    13-165 (216)
108 >2w0m_A SSO2452; RECA, SSPF, u  74.6     2.5 7.5E-05   22.5   2.8   34   46-82     26-59  (235)
109 >1l8q_A Chromosomal replicatio  74.6     2.9 8.6E-05   22.1   3.1   38   41-81     35-72  (166)
110 >3ice_A Transcription terminat  74.5     5.6 0.00017   20.0   4.6   97   50-157    37-143 (281)
111 >2r6a_A DNAB helicase, replica  74.5     3.8 0.00011   21.2   3.7   27   55-81     22-49  (264)
112 >2pt7_A CAG-ALFA; ATPase, prot  74.5     1.8 5.4E-05   23.5   2.1   34   44-81     34-67  (192)
113 >2wv9_A Flavivirin protease NS  73.7     2.9 8.6E-05   22.1   2.9   27   55-81     19-46  (243)
114 >2ffh_A Protein (FFH); SRP54,   73.4     3.2 9.6E-05   21.7   3.1   31   54-84     14-44  (190)
115 >1g5t_A COB(I)alamin adenosylt  73.3     6.7  0.0002   19.5   5.2   34   53-87     35-68  (196)
116 >2vhj_A Ntpase P4, P4; non- hy  72.6     4.6 0.00014   20.6   3.7   25   55-79     68-92  (267)
117 >1g8f_A Sulfate adenylyltransf  72.2     3.4  0.0001   21.6   3.0   56   55-126    13-74  (120)
118 >2qby_A CDC6 homolog 1, cell d  72.0       2   6E-05   23.2   1.8   28   46-76     48-75  (196)
119 >2yvu_A Probable adenylyl-sulf  71.8     2.7   8E-05   22.3   2.4   39   46-87     16-54  (186)
120 >2z0h_A DTMP kinase, thymidyla  71.6     4.5 0.00013   20.7   3.5   33   55-87      9-41  (197)
121 >1vm6_A DHPR, dihydrodipicolin  71.3     3.7 0.00011   21.3   3.0   33   53-87     17-49  (142)
122 >2v6i_A RNA helicase; membrane  71.3     4.6 0.00013   20.7   3.5   27   55-81     11-38  (225)
123 >1hqc_A RUVB; extended AAA-ATP  71.2     2.3 6.9E-05   22.7   2.0   29   42-73     37-65  (167)
124 >3b85_A Phosphate starvation-i  71.2     4.6 0.00014   20.6   3.5   26   55-80     31-56  (194)
125 >2zan_A Vacuolar protein sorti  71.2     5.6 0.00016   20.1   3.9   34  257-290   208-242 (300)
126 >1gm5_A RECG; helicase, replic  71.1     7.5 0.00022   19.1   7.0   27   55-81     52-78  (203)
127 >2qm8_A GTPase/ATPase; G prote  71.1     7.5 0.00022   19.1   8.4  137   43-197    54-206 (337)
128 >1g41_A Heat shock protein HSL  71.0     1.7 5.1E-05   23.7   1.2   40   42-87     49-94  (335)
129 >2fi1_A Hydrolase, haloacid de  70.6     4.6 0.00014   20.6   3.4   89   54-147    13-119 (124)
130 >1w36_B RECB, exodeoxyribonucl  70.6     1.9 5.5E-05   23.4   1.3   39   44-85     17-55  (243)
131 >2qby_B CDC6 homolog 3, cell d  70.5     2.3 6.8E-05   22.8   1.8   27   44-73     46-72  (196)
132 >1pfk_A Phosphofructokinase; t  70.4     5.1 0.00015   20.3   3.5  111   49-160     5-125 (185)
133 >2p65_A Hypothetical protein P  70.4     2.1 6.2E-05   23.1   1.6   29   44-75     44-72  (187)
134 >1gtv_A TMK, thymidylate kinas  70.0     1.7 4.9E-05   23.8   1.0   32   55-86      9-40  (214)
135 >3ld9_A DTMP kinase, thymidyla  70.0     2.9 8.6E-05   22.1   2.2   40   45-87     23-62  (223)
136 >1cqx_A Flavohemoprotein; glob  70.0     3.6 0.00011   21.4   2.7   33   44-80      7-39  (143)
137 >1fnn_A CDC6P, cell division c  69.6     4.2 0.00012   20.9   3.0   28   46-76     47-74  (192)
138 >2oca_A DAR protein, ATP-depen  68.8       7 0.00021   19.3   4.0  125   54-198    49-178 (202)
139 >3hdt_A Putative kinase; struc  68.4    0.81 2.4E-05   26.0  -0.9   37   43-82     13-50  (223)
140 >2chq_A Replication factor C s  68.3     1.7 4.9E-05   23.8   0.7   31   44-77     39-69  (160)
141 >1uj2_A Uridine-cytidine kinas  68.1     5.9 0.00017   19.9   3.5   35   47-81     23-62  (188)
142 >3bgw_A DNAB-like replicative   68.1     4.3 0.00013   20.8   2.8   27   55-81     23-49  (261)
143 >3bh0_A DNAB-like replicative   68.1     4.9 0.00014   20.5   3.0   28   55-82     28-55  (266)
144 >2gk6_A Regulator of nonsense   67.9     4.9 0.00014   20.4   3.0   28   56-83     60-87  (263)
145 >3h1t_A Type I site-specific r  67.9     5.2 0.00015   20.3   3.2   22   54-75     37-58  (192)
146 >2vbc_A Dengue 4 NS3 FULL-leng  67.9     4.7 0.00014   20.6   2.9   27   55-81     20-47  (229)
147 >2qxy_A Response regulator; re  67.8     3.2 9.6E-05   21.7   2.1   48  115-162    29-85  (142)
148 >2wjy_A Regulator of nonsense   67.7     4.9 0.00014   20.4   3.0   28   56-83     60-87  (263)
149 >1p5z_B DCK, deoxycytidine kin  67.5    0.37 1.1E-05   28.4  -2.8   43   45-90     25-68  (263)
150 >2ewv_A Twitching motility pro  67.5     8.1 0.00024   18.9   4.1   26   55-80     21-47  (248)
151 >2oyc_A PLP phosphatase, pyrid  67.4     8.9 0.00026   18.6   5.6   62  222-287    19-93  (140)
152 >1p6x_A Thymidine kinase; P-lo  67.1     2.1 6.4E-05   23.0   1.1   33   48-83     12-44  (334)
153 >1ye8_A Protein THEP1, hypothe  66.8     4.4 0.00013   20.8   2.6   94   54-148     8-113 (178)
154 >1yks_A Genome polyprotein [co  66.8     5.2 0.00015   20.3   3.0   27   55-81     17-44  (230)
155 >3cmu_A Protein RECA, recombin  66.1       5 0.00015   20.4   2.8   27   55-81     32-58  (233)
156 >2is6_A DNA helicase II; hydro  66.0       6 0.00018   19.8   3.2   35   44-81     23-61  (201)
157 >2j37_W Signal recognition par  65.9     6.1 0.00018   19.8   3.2   30   53-82     13-42  (190)
158 >1kjn_A MTH0777; hypotethical   65.9     5.6 0.00017   20.0   3.0   23   59-81     21-43  (157)
159 >1u0j_A DNA replication protei  65.8     4.5 0.00013   20.7   2.5   67   26-95     24-90  (204)
160 >3dhn_A NAD-dependent epimeras  65.8     5.9 0.00017   19.9   3.1   35   52-88      8-42  (227)
161 >1f0k_A MURG, UDP-N-acetylgluc  65.3     9.8 0.00029   18.3   4.3   33   55-87     15-47  (196)
162 >1rz3_A Hypothetical protein r  65.0     6.1 0.00018   19.7   3.1   40   44-86     22-62  (201)
163 >1jbk_A CLPB protein; beta bar  65.0       3   9E-05   21.9   1.5   30   42-74     42-71  (195)
164 >2pez_A Bifunctional 3'-phosph  64.2     5.9 0.00017   19.9   2.8   33   55-87     14-46  (179)
165 >1gg4_A UDP-N-acetylmuramoylal  64.1     4.1 0.00012   21.0   2.0   37   41-81     16-52  (231)
166 >3hws_A ATP-dependent CLP prot  64.0     2.9 8.5E-05   22.1   1.2   36   40-81     48-83  (255)
167 >2v1u_A Cell division control   63.5     3.8 0.00011   21.2   1.8   30   44-76     45-74  (200)
168 >2p67_A LAO/AO transport syste  63.5      11 0.00031   18.1   5.4   42   43-87     55-97  (265)
169 >2v54_A DTMP kinase, thymidyla  63.3       4 0.00012   21.0   1.9   35   46-83      7-41  (204)
170 >1oc2_A DTDP-glucose 4,6-dehyd  63.0      11 0.00032   18.0   5.3   32   52-85      8-39  (329)
171 >1nlf_A Regulatory protein REP  62.9     8.9 0.00026   18.6   3.6   26   55-80     17-42  (257)
172 >1vl0_A DTDP-4-dehydrorhamnose  62.8      11 0.00032   18.0   4.2   63  221-285   187-249 (292)
173 >2j28_9 Signal recognition par  62.8     3.2 9.4E-05   21.8   1.3  100   46-162    11-133 (239)
174 >1qvr_A CLPB protein; coiled c  62.6     4.4 0.00013   20.8   2.0   29   43-74     46-74  (186)
175 >3ec2_A DNA replication protei  62.5     3.7 0.00011   21.3   1.6   37   41-80     36-72  (180)
176 >1w5s_A ORC2; CDC6, DNA replic  62.5     4.1 0.00012   21.0   1.8   25   46-73     55-79  (214)
177 >1r6b_X CLPA protein; AAA+, N-  62.4     4.1 0.00012   21.0   1.8   29   44-75     52-80  (192)
178 >2orw_A Thymidine kinase; TMTK  62.4      11 0.00033   17.9   5.4   27   55-81     12-38  (142)
179 >2chg_A Replication factor C s  62.3     4.2 0.00013   20.9   1.8   31   44-77     39-69  (160)
180 >2w00_A HSDR, R.ECOR124I; ATP-  62.1      11 0.00033   17.9   6.4   28   54-81     35-64  (199)
181 >2pbr_A DTMP kinase, thymidyla  62.0       9 0.00027   18.6   3.5   30   55-84      9-38  (195)
182 >1of1_A Thymidine kinase; tran  62.0     3.8 0.00011   21.3   1.5   36   43-81     48-84  (376)
183 >2plr_A DTMP kinase, probable   61.9     5.9 0.00017   19.9   2.5   30   55-84     13-42  (213)
184 >1ofh_A ATP-dependent HSL prot  61.7     3.9 0.00011   21.2   1.6   31   40-73     47-77  (201)
185 >1gvn_B Zeta; postsegregationa  61.6     4.9 0.00015   20.4   2.1   25   46-73     36-60  (287)
186 >2v3c_C SRP54, signal recognit  61.4     7.1 0.00021   19.3   2.8   30   55-84     17-46  (188)
187 >1in4_A RUVB, holliday junctio  61.1       4 0.00012   21.0   1.6   37   41-83     49-85  (179)
188 >1nkt_A Preprotein translocase  61.0     9.1 0.00027   18.5   3.4  102   45-162   121-241 (311)
189 >2ggs_A 273AA long hypothetica  61.0      10 0.00031   18.1   3.6   33   52-86      4-36  (273)
190 >3c97_A Signal transduction hi  61.0      10 0.00031   18.1   3.7   27  115-141    35-61  (65)
191 >2jlq_A Serine protease subuni  61.0     7.7 0.00023   19.0   3.0   27   55-81     28-55  (237)
192 >1qvr_A CLPB protein; coiled c  61.0      12 0.00034   17.8   5.7   40   38-80     44-83  (218)
193 >1a5t_A Delta prime, HOLB; zin  61.0       4 0.00012   21.1   1.5   31   41-74     22-52  (166)
194 >1u94_A RECA protein, recombin  60.9     8.1 0.00024   18.9   3.1   27   55-81     36-62  (237)
195 >2gks_A Bifunctional SAT/APS k  60.9     7.4 0.00022   19.2   2.9   28   55-82     13-40  (178)
196 >2p6r_A Afuhel308 helicase; pr  60.8     2.3 6.8E-05   22.8   0.3   27   55-81     49-75  (202)
197 >3bs4_A Uncharacterized protei  60.4     6.9  0.0002   19.4   2.6   28   55-82     30-57  (260)
198 >1tf7_A KAIC; homohexamer, hex  60.3     8.4 0.00025   18.8   3.1   27   55-81     36-62  (271)
199 >3ehe_A UDP-glucose 4-epimeras  60.1      10  0.0003   18.2   3.5   33   52-86      5-37  (166)
200 >1vp8_A Hypothetical protein A  59.9    0.19 5.6E-06   30.5  -5.4   29  119-147    50-79  (201)
201 >2ccj_A DTMP kinase, thymidyla  59.8     7.3 0.00022   19.2   2.7   30   55-84     11-40  (205)
202 >1cr0_A DNA primase/helicase;   59.6     8.8 0.00026   18.6   3.1   30   55-84     21-51  (273)
203 >2dr3_A UPF0273 protein PH0284  59.6     8.8 0.00026   18.6   3.1   28   55-82     32-59  (247)
204 >1zxx_A 6-phosphofructokinase;  59.5     8.7 0.00026   18.7   3.0  111   49-160     4-124 (182)
205 >2c20_A UDP-glucose 4-epimeras  59.4      12 0.00036   17.6   4.6   34   52-87      5-38  (330)
206 >2pia_A Phthalate dioxygenase   59.4       6 0.00018   19.8   2.2   29   52-80      8-36  (121)
207 >1sxj_D Activator 1 41 kDa sub  59.4     4.5 0.00013   20.7   1.5   26   45-73     60-85  (191)
208 >2qz4_A Paraplegin; AAA+, SPG7  59.2     4.5 0.00013   20.7   1.5   32   44-81     40-71  (177)
209 >3ew7_A LMO0794 protein; Q8Y8U  59.2      12 0.00037   17.6   4.1   33   52-86      4-36  (221)
210 >1q57_A DNA primase/helicase;   59.0     5.1 0.00015   20.3   1.8   29   55-83     21-50  (273)
211 >1uaa_A REP helicase, protein   58.9     6.7  0.0002   19.5   2.4   28   54-81     23-54  (195)
212 >3cmw_A Protein RECA, recombin  58.9     8.1 0.00024   18.9   2.8   27   55-81     36-62  (237)
213 >1njg_A DNA polymerase III sub  58.9     4.6 0.00014   20.7   1.5   32   40-74     42-73  (185)
214 >3cmu_A Protein RECA, recombin  58.9     8.1 0.00024   18.9   2.8   27   55-81     36-62  (237)
215 >1orr_A CDP-tyvelose-2-epimera  58.8      13 0.00037   17.5   6.2   31   52-84      5-35  (347)
216 >1e9r_A Conjugal transfer prot  58.8     8.4 0.00025   18.8   2.8   27   55-81     39-65  (274)
217 >2v9p_A Replication protein E1  58.7      11 0.00032   18.0   3.4   32   39-73     46-77  (229)
218 >1rif_A DAR protein, DNA helic  58.5     7.6 0.00022   19.1   2.6   28   54-81     49-77  (195)
219 >1m8p_A Sulfate adenylyltransf  58.1     7.4 0.00022   19.2   2.5   31   54-84     13-43  (182)
220 >3tmk_A Thymidylate kinase; ph  58.1     6.7  0.0002   19.5   2.3   32   45-79      7-38  (216)
221 >3kx2_B PRE-mRNA-splicing fact  58.1      13 0.00038   17.4   4.0   12  232-243   144-155 (222)
222 >3pfk_A Phosphofructokinase; t  57.5      12 0.00035   17.7   3.4  111   49-160     4-124 (186)
223 >2b69_A UDP-glucuronate decarb  57.4      13 0.00039   17.4   4.1   31   53-85     32-62  (198)
224 >3h4m_A Proteasome-activating   57.3     5.6 0.00016   20.0   1.7   24   55-81     60-83  (187)
225 >1d2n_A N-ethylmaleimide-sensi  57.3     5.1 0.00015   20.3   1.6   29   42-73     63-91  (196)
226 >2bll_A Protein YFBG; decarbox  56.6      14 0.00041   17.3   4.2   33   52-86      4-36  (345)
227 >1iy2_A ATP-dependent metallop  56.6     4.6 0.00014   20.6   1.2   34   42-81     72-105 (210)
228 >3h2s_A Putative NADH-flavin r  56.5      14 0.00041   17.3   4.1   32   52-85      4-35  (224)
229 >3gpi_A NAD-dependent epimeras  56.5      14 0.00041   17.3   6.0   38   52-91      6-43  (286)
230 >2c9o_A RUVB-like 1; hexameric  56.5      14 0.00041   17.3   5.4   37   39-81     59-95  (365)
231 >3cr8_A Sulfate adenylyltranfe  56.3     5.8 0.00017   19.9   1.7   37   45-84      7-43  (188)
232 >2zxe_A Na, K-ATPase alpha sub  56.2      14 0.00041   17.2   4.2   27   55-81     22-48  (185)
233 >2q6t_A DNAB replication FORK   56.1      11 0.00032   18.0   3.1   28   55-82     31-59  (266)
234 >3d8b_A Fidgetin-like protein   56.0     4.5 0.00013   20.7   1.1   27   43-72    117-143 (268)
235 >3iru_A Phoshonoacetaldehyde h  55.9      14 0.00042   17.2   5.4   42   43-84      5-51  (172)
236 >2q1w_A Putative nucleotide su  55.7      14 0.00042   17.2   4.2   33   52-86     25-57  (333)
237 >1qgu_B Protein (nitrogenase m  55.7      13 0.00039   17.4   3.4   34  220-253    79-112 (240)
238 >2p5t_B PEZT; postsegregationa  55.5     6.1 0.00018   19.8   1.7   34   42-81     31-64  (253)
239 >3gi1_A LBP, laminin-binding p  55.5      14 0.00042   17.2   4.2   94  235-330    10-105 (109)
240 >1pjr_A PCRA; DNA repair, DNA   54.9      12 0.00035   17.7   3.1   28   54-81     32-63  (200)
241 >3dqp_A Oxidoreductase YLBE; a  54.8      15 0.00043   17.1   4.0   35   52-88      4-38  (219)
242 >2bka_A CC3, TAT-interacting p  54.6      13  0.0004   17.3   3.3   33   52-86     22-54  (242)
243 >2z83_A Helicase/nucleoside tr  54.4      11 0.00034   17.8   2.9   27   55-81     30-57  (240)
244 >1u2p_A Ptpase, low molecular   54.3     8.5 0.00025   18.7   2.3   40   42-86      5-47  (163)
245 >1um8_A ATP-dependent CLP prot  54.3     5.3 0.00016   20.2   1.2   37   39-81     68-104 (272)
246 >2gno_A DNA polymerase III, ga  54.1     5.8 0.00017   19.9   1.4   22   55-76     27-48  (140)
247 >1f6b_A SAR1; gtpases, N-termi  54.0     5.9 0.00018   19.9   1.4   27   38-67     20-46  (198)
248 >1x6v_B Bifunctional 3'-phosph  54.0     9.3 0.00027   18.5   2.4   38   46-86     55-92  (233)
249 >1hdo_A Biliverdin IX beta red  53.8      15 0.00045   17.0   4.1   33   52-86      7-39  (206)
250 >3eie_A Vacuolar protein sorti  53.6     6.1 0.00018   19.8   1.4   26   44-72     52-77  (204)
251 >1iqp_A RFCS; clamp loader, ex  53.5     6.9  0.0002   19.4   1.7   30   45-77     48-77  (168)
252 >2gn4_A FLAA1 protein, UDP-GLC  53.3      15 0.00045   16.9   3.6   32   52-85     25-56  (344)
253 >2c5a_A GDP-mannose-3', 5'-epi  53.3      14 0.00043   17.1   3.3   33   52-86     33-65  (379)
254 >2zpa_A Uncharacterized protei  53.2     5.4 0.00016   20.2   1.1   25   54-81     34-58  (153)
255 >3c1o_A Eugenol synthase; phen  53.0      16 0.00046   16.9   6.7   32   52-85      8-39  (321)
256 >1htw_A HI0065; nucleotide-bin  52.8     5.8 0.00017   19.9   1.2   34   45-84     35-68  (158)
257 >3cpe_A Terminase, DNA packagi  52.4      16 0.00047   16.8   3.4   27   55-81     42-70  (238)
258 >3i6i_A Putative leucoanthocya  52.3      16 0.00047   16.8   4.1   67  222-288   189-257 (346)
259 >2db3_A ATP-dependent RNA heli  52.1      12 0.00037   17.6   2.8   43  231-273   184-232 (271)
260 >3b9p_A CG5977-PA, isoform A;   51.9     6.1 0.00018   19.8   1.2   33   43-81     54-86  (188)
261 >2r2a_A Uncharacterized protei  51.9     4.6 0.00014   20.6   0.6   21   56-76     15-35  (199)
262 >3d3j_A Enhancer of mRNA-decap  51.6      16 0.00048   16.7   6.0  152   43-240   133-286 (306)
263 >1z7e_A Protein aRNA; rossmann  51.4      16 0.00049   16.7   4.2   32   52-85     17-48  (358)
264 >1q0u_A Bstdead; DEAD protein,  51.1     6.9  0.0002   19.4   1.4   93   55-159    50-157 (219)
265 >1wp9_A ATP-dependent RNA heli  51.0      17 0.00049   16.7   5.3   27   55-81     32-59  (196)
266 >1tf7_A KAIC; homohexamer, hex  51.0      13 0.00039   17.4   2.8   31   55-85     48-79  (254)
267 >1n2s_A DTDP-4-, DTDP-glucose   50.9      13 0.00037   17.5   2.7   33   52-86      4-36  (299)
268 >1ja1_A NADPH-cytochrome P450   50.8      12 0.00035   17.7   2.6   28   42-73      5-32  (159)
269 >2oil_A CATX-8, RAS-related pr  50.8     7.6 0.00023   19.1   1.6   26   40-68     22-47  (193)
270 >2ce7_A Cell division protein   50.7     7.5 0.00022   19.1   1.5   33   43-81     49-81  (185)
271 >1m1n_B Nitrogenase molybdenum  50.7      17  0.0005   16.6   3.6   70   61-141    66-137 (215)
272 >1e32_A P97; membrane fusion;   50.6     6.6 0.00019   19.5   1.2   34   42-81     40-73  (174)
273 >1ixz_A ATP-dependent metallop  50.5     6.7  0.0002   19.5   1.2   30   46-81     52-81  (185)
274 >2hqr_A Putative transcription  50.5      17  0.0005   16.6   4.7   48  115-162    25-78  (99)
275 >2p5y_A UDP-glucose 4-epimeras  50.4      17  0.0005   16.6   3.8   33   52-86      4-36  (311)
276 >1lv7_A FTSH; alpha/beta domai  50.2     7.7 0.00023   19.0   1.5   34   42-81     44-77  (181)
277 >1vzy_A 33 kDa chaperonin; cha  50.1      12 0.00035   17.7   2.5   40  234-273    14-53  (54)
278 >1mio_B Nitrogenase molybdenum  50.1      17 0.00051   16.6   4.0   82   61-158    13-98  (109)
279 >3ius_A Uncharacterized conser  50.1      17 0.00051   16.6   3.9   33   52-86      8-40  (286)
280 >3cg0_A Response regulator rec  50.1     7.9 0.00023   19.0   1.6   30  115-144    34-64  (91)
281 >1qyd_A Pinoresinol-lariciresi  50.1      15 0.00045   16.9   3.0   60  222-281   188-248 (313)
282 >3iuy_A Probable ATP-dependent  50.0      16 0.00049   16.7   3.2  101   54-160    65-175 (228)
283 >2qp9_X Vacuolar protein sorti  50.0     7.8 0.00023   19.0   1.5   35   41-81     82-116 (237)
284 >2vsf_A XPD, DNA repair helica  49.9     4.3 0.00013   20.9   0.2   30   55-84     13-43  (234)
285 >2qt1_A Nicotinamide riboside   49.7      12 0.00035   17.7   2.4   32   44-81     21-52  (207)
286 >1vq0_A 33 kDa chaperonin; TM1  49.5      18 0.00052   16.5   3.8   42  234-276    15-56  (58)
287 >1zak_A Adenylate kinase; ATP:  49.4     5.9 0.00017   19.9   0.8   39   44-85      6-44  (222)
288 >1iuk_A Hypothetical protein T  49.4      18 0.00052   16.5   4.5   89   53-148    18-109 (140)
289 >2dcl_A Hypothetical UPF0166 p  49.3      18 0.00052   16.5   5.2   84   59-165    24-116 (127)
290 >2qen_A Walker-type ATPase; un  49.3     5.5 0.00016   20.1   0.7   32   46-80     34-65  (202)
291 >2iw3_A Elongation factor 3A;   49.2     5.2 0.00015   20.3   0.5   96   49-147    37-152 (227)
292 >1xvl_A Mn transporter, MNTC p  49.2      18 0.00052   16.5   3.8   50  235-284    11-60  (90)
293 >1ep3_B Dihydroorotate dehydro  49.2      13  0.0004   17.3   2.6   38   43-88      7-44  (159)
294 >1e2k_A Thymidine kinase; tran  49.1     5.3 0.00016   20.2   0.5   38   46-86      6-44  (331)
295 >2i4i_A ATP-dependent RNA heli  49.1     4.1 0.00012   21.0  -0.0   49   95-143   108-160 (245)
296 >1gvh_A Flavohemoprotein; oxid  48.9      17  0.0005   16.6   3.1   34   44-81      7-40  (143)
297 >1ulu_A Enoyl-acyl carrier pro  48.9      18 0.00053   16.4   3.8   32   52-83     12-43  (261)
298 >1rpn_A GDP-mannose 4,6-dehydr  48.6      18 0.00053   16.4   4.2   33   52-86     18-50  (189)
299 >2qr3_A Two-component system r  48.5      10 0.00031   18.1   1.9   27  115-141    28-54  (140)
300 >2pl3_A Probable ATP-dependent  48.4      16 0.00046   16.9   2.8   99   54-160    46-155 (212)
301 >1ddg_A Sulfite reductase (NAD  48.3      15 0.00045   17.0   2.8   34   43-80      5-38  (152)
302 >2rc5_A Ferredoxin-NADP reduct  48.2      13 0.00038   17.4   2.4   26   44-73     10-35  (158)
303 >1eq2_A ADP-L-glycero-D-mannoh  48.2      18 0.00054   16.4   4.0   33   52-86      3-35  (310)
304 >2i1q_A DNA repair and recombi  48.0     4.9 0.00015   20.4   0.2   28   55-82     43-70  (258)
305 >2jaq_A Deoxyguanosine kinase;  48.0     3.8 0.00011   21.2  -0.3   28   55-82      9-36  (205)
306 >3a4m_A L-seryl-tRNA(SEC) kina  47.9      15 0.00044   17.0   2.7   29   54-82     12-40  (182)
307 >2jeo_A Uridine-cytidine kinas  47.6      15 0.00044   17.0   2.6   36   45-82     26-66  (181)
308 >3i0z_A Putative tagatose-6-ph  47.5      19 0.00055   16.3   3.4   32   55-86     63-96  (119)
309 >2rgx_A Adenylate kinase; tran  47.5     9.1 0.00027   18.5   1.5   18   55-72      9-26  (148)
310 >1ly1_A Polynucleotide kinase;  47.3      11 0.00031   18.1   1.9   24   55-82     11-34  (114)
311 >1aw2_A Triosephosphate isomer  47.1     4.8 0.00014   20.5   0.1   20  225-244   232-251 (256)
312 >1m7g_A Adenylylsulfate kinase  47.0      11 0.00033   17.9   1.9   30   55-84     34-63  (211)
313 >2r6j_A Eugenol synthase 1; ph  47.0      19 0.00056   16.2   3.3   69  222-290   182-252 (318)
314 >1e6u_A GDP-fucose synthetase;  46.6      19 0.00057   16.2   3.5   34   52-87      7-40  (321)
315 >3dkp_A Probable ATP-dependent  46.6      12 0.00036   17.6   2.1   96   54-160    74-183 (245)
316 >1rkb_A Protein AD-004, protei  46.5     9.6 0.00028   18.4   1.5   23   46-71      7-29  (173)
317 >1qf9_A UMP/CMP kinase, protei  46.5     7.7 0.00023   19.0   1.0   22   55-76     15-36  (194)
318 >3e48_A Putative nucleoside-di  46.5      19 0.00057   16.2   3.7   67  221-288   164-230 (289)
319 >2hun_A 336AA long hypothetica  46.3      20 0.00058   16.2   4.4   33   52-86      7-39  (336)
320 >1jr3_A DNA polymerase III sub  46.1     9.8 0.00029   18.3   1.5   33   38-73     33-65  (177)
321 >2gk4_A Conserved hypothetical  46.0     9.7 0.00029   18.3   1.5   33   45-82     19-51  (232)
322 >2dwc_A PH0318, 433AA long hyp  46.0      20 0.00058   16.1   3.2   61  226-286    22-92  (108)
323 >2z1m_A GDP-D-mannose dehydrat  45.8      20 0.00059   16.1   3.8   30   52-83      7-36  (178)
324 >3eme_A Rhodanese-like domain   45.6      13 0.00037   17.5   2.0   82   63-150     6-96  (103)
325 >1xwi_A SKD1 protein; VPS4B, A  45.6      14  0.0004   17.3   2.2   36   42-83     44-79  (178)
326 >2o0j_A Terminase, DNA packagi  45.4      20 0.00058   16.1   3.0   27   55-81     23-51  (221)
327 >1sxj_B Activator 1 37 kDa sub  45.4      10  0.0003   18.2   1.5   26   45-73     44-69  (166)
328 >2a9o_A Response regulator; es  45.2      20  0.0006   16.1   3.8   26  116-141    27-52  (120)
329 >2obl_A ESCN; ATPase, hydrolas  45.1      19 0.00057   16.2   2.9   30   50-80     75-104 (271)
330 >3eph_A TRNA isopentenyltransf  45.0      11 0.00031   18.1   1.6  129   46-198     5-148 (270)
331 >2g4r_A MOGA, molybdopterin bi  44.9      20  0.0006   16.0   5.0   36   43-78      5-40  (160)
332 >2o1e_A YCDH; alpha-beta prote  44.9      20 0.00061   16.0   3.3   51  234-284     8-58  (82)
333 >1moz_A ARL1, ADP-ribosylation  44.9      17 0.00051   16.6   2.6   33   34-73      9-41  (183)
334 >3hbm_A UDP-sugar hydrolase; P  44.8      17  0.0005   16.6   2.6   40   42-84      7-46  (134)
335 >2fna_A Conserved hypothetical  44.6      11 0.00032   18.0   1.5   34   43-82     30-63  (208)
336 >3ixz_A Potassium-transporting  44.5      21 0.00061   16.0   4.1   21   61-81     31-51  (187)
337 >2fg5_A RAB-22B, RAS-related p  44.4      15 0.00046   16.9   2.3   24   43-69     23-46  (192)
338 >3foj_A Uncharacterized protei  44.3      13 0.00039   17.4   2.0   82   63-150     6-96  (100)
339 >1yzq_A Small GTP binding prot  44.3      15 0.00044   17.0   2.2   24   42-68      5-28  (170)
340 >1xgk_A Nitrogen metabolite re  44.3      21 0.00062   16.0   4.1   33   52-86      9-41  (352)
341 >2p4h_X Vestitone reductase; N  44.2      21 0.00062   16.0   3.9   33   52-86      5-37  (322)
342 >3gk5_A Uncharacterized rhodan  44.1      14  0.0004   17.3   2.0   48  102-149    43-94  (108)
343 >3kbq_A Protein TA0487; struct  44.1      21 0.00062   16.0   4.4   35   44-78      6-40  (172)
344 >1p9o_A Phosphopantothenoylcys  44.1     9.4 0.00028   18.4   1.2   35   44-83     54-88  (313)
345 >2cvh_A DNA repair and recombi  43.6     8.3 0.00025   18.8   0.9   27   55-81     29-55  (220)
346 >3cm0_A Adenylate kinase; ATP-  43.6      11 0.00033   17.9   1.5   19   55-73     13-31  (186)
347 >1x1r_A RAS-related protein M-  43.6      13 0.00037   17.6   1.8   26   40-68     10-35  (178)
348 >1sxj_E Activator 1 40 kDa sub  43.5      21 0.00063   15.9   3.9   40   33-75     26-65  (192)
349 >2whl_A Beta-mannanase, baman5  43.2      22 0.00064   15.9   5.4   28  259-286   195-222 (258)
350 >3k1z_A Haloacid dehalogenase-  43.2      16 0.00047   16.8   2.2   26   60-85     24-49  (179)
351 >3enk_A UDP-glucose 4-epimeras  43.1      22 0.00064   15.8   3.8   31   52-84      9-39  (341)
352 >2pzm_A Putative nucleotide su  42.8      22 0.00065   15.8   4.3   32   53-86     25-56  (184)
353 >3bk7_A ABC transporter ATP-bi  42.7     9.1 0.00027   18.5   1.0   95   54-148    44-157 (226)
354 >2bdt_A BH3686; alpha-beta pro  42.5     9.8 0.00029   18.3   1.1   16   55-70     11-26  (189)
355 >2fn4_A P23, RAS-related prote  42.4      14 0.00042   17.2   1.9   28   39-69      5-32  (181)
356 >1ukz_A Uridylate kinase; tran  42.4     9.9 0.00029   18.3   1.1   25   46-73     17-42  (203)
357 >3dm5_A SRP54, signal recognit  42.4      22 0.00066   15.8   3.1   31   52-82     13-43  (192)
358 >1z45_A GAL10 bifunctional pro  42.4      22 0.00066   15.8   4.2   31   52-84     15-45  (354)
359 >1knq_A Gluconate kinase; ALFA  42.4      12 0.00036   17.7   1.5   19   55-73     17-35  (175)
360 >1rkx_A CDP-glucose-4,6-dehydr  42.3      22 0.00066   15.8   4.9   34   52-87     13-46  (357)
361 >2wm8_A MDP-1, magnesium-depen  42.2      22 0.00066   15.8   5.4   27   59-85     43-69  (161)
362 >1ak2_A Adenylate kinase isoen  42.2      12 0.00036   17.6   1.5   27   44-73     17-43  (185)
363 >2qzj_A Two-component response  42.1      22 0.00067   15.7   4.2   28  116-143    30-57  (136)
364 >3ch4_B Pmkase, phosphomevalon  42.0     8.8 0.00026   18.6   0.8   35   46-83     14-48  (202)
365 >1via_A Shikimate kinase; stru  42.0      12 0.00036   17.6   1.5   23   46-71      7-29  (175)
366 >2f9l_A RAB11B, member RAS onc  41.9      18 0.00054   16.4   2.4   31   44-77      6-36  (199)
367 >1tev_A UMP-CMP kinase; ploop,  41.8      13 0.00037   17.5   1.5   28   46-76      6-33  (196)
368 >2pt5_A Shikimate kinase, SK;   41.8      12 0.00037   17.6   1.5   17   55-71      9-25  (168)
369 >2dhr_A FTSH; AAA+ protein, he  41.8      11 0.00033   17.9   1.2   29   50-81     66-96  (200)
370 >1ltq_A Polynucleotide kinase;  41.7      11 0.00031   18.1   1.1   24   55-82     11-34  (114)
371 >3e8x_A Putative NAD-dependent  41.7      23 0.00068   15.7   4.1   31   52-84     25-55  (236)
372 >1sxj_C Activator 1 40 kDa sub  41.7      13 0.00038   17.5   1.6   25   46-73     49-73  (168)
373 >3ber_A Probable ATP-dependent  41.5      23 0.00068   15.7   3.7   94   55-160    89-194 (249)
374 >1z0f_A RAB14, member RAS onco  41.4      12 0.00037   17.6   1.5   25   41-68     13-37  (179)
375 >2efe_B Small GTP-binding prot  41.1      12 0.00035   17.8   1.3   25   41-68     10-34  (181)
376 >1qhx_A CPT, protein (chloramp  41.1      11 0.00034   17.8   1.2   27   46-75      6-32  (178)
377 >3c3m_A Response regulator rec  41.1      23 0.00069   15.6   4.1   25  117-141    30-54  (108)
378 >2a5j_A RAS-related protein RA  41.0      13 0.00039   17.4   1.5   25   41-68     19-43  (191)
379 >2c95_A Adenylate kinase 1; AP  40.8      13 0.00039   17.3   1.5   27   44-73     10-36  (196)
380 >1g8p_A Magnesium-chelatase 38  40.8      12 0.00037   17.6   1.4   27   43-72     45-71  (218)
381 >3cf0_A Transitional endoplasm  40.7      12 0.00035   17.8   1.2   32   44-81     50-81  (204)
382 >3cpj_B GTP-binding protein YP  40.6      13 0.00037   17.5   1.4   25   41-68     11-35  (223)
383 >2d7d_A Uvrabc system protein   40.6      17 0.00051   16.6   2.1   24   55-81     41-64  (311)
384 >1oyw_A RECQ helicase, ATP-dep  40.6      18 0.00054   16.4   2.2   92   55-163    49-150 (209)
385 >2zkl_A Capsular polysaccharid  40.4      24  0.0007   15.6   3.9   32   52-85      4-35  (130)
386 >2cdn_A Adenylate kinase; phos  40.4      14  0.0004   17.3   1.5   25   46-73     23-47  (201)
387 >2b0c_A Putative phosphatase;   40.4      24 0.00071   15.6   4.7   86   60-145    16-119 (129)
388 >2r62_A Cell division protease  40.3      14 0.00041   17.3   1.5   19   55-73     53-71  (184)
389 >2o2x_A Hypothetical protein;   40.3      24 0.00071   15.5   4.5   76  230-326   136-213 (218)
390 >1o51_A Hypothetical protein T  40.2      23 0.00068   15.7   2.7   28   59-86     28-55  (114)
391 >3bc1_A RAS-related protein RA  40.2      14 0.00041   17.2   1.6   25   41-68      9-33  (195)
392 >1kag_A SKI, shikimate kinase   40.0      12 0.00035   17.7   1.2   16   55-70     13-28  (173)
393 >1fzq_A ADP-ribosylation facto  39.9      22 0.00066   15.8   2.6   29   36-67      9-37  (181)
394 >3c3w_A Two component transcri  39.9      16 0.00047   16.8   1.8   44  118-161    31-84  (129)
395 >3h0k_A UPF0200 protein SSO104  39.8      15 0.00046   16.9   1.7   21   54-78      8-28  (178)
396 >1tue_A Replication protein E1  39.8      12 0.00035   17.7   1.1   32   39-73     54-85  (212)
397 >1kjq_A GART 2, phosphoribosyl  39.7      24 0.00072   15.5   3.5   20   61-80     21-40  (125)
398 >2go7_A Hydrolase, haloacid de  39.7      23 0.00067   15.7   2.6  100   54-163    11-116 (137)
399 >1n7h_A GDP-D-mannose-4,6-dehy  39.7      24 0.00072   15.5   5.8   33   52-86     32-64  (381)
400 >2erx_A GTP-binding protein DI  39.6      12 0.00037   17.6   1.2   22   44-68      4-25  (172)
401 >2qjw_A Uncharacterized protei  39.3      19 0.00058   16.2   2.2   84   55-143    14-105 (176)
402 >2bwj_A Adenylate kinase 5; ph  39.3      15 0.00043   17.1   1.5   25   45-72     14-38  (199)
403 >2atv_A RERG, RAS-like estroge  39.2      18 0.00053   16.4   2.0   26   40-68     25-50  (196)
404 >3dz8_A RAS-related protein RA  39.2      21 0.00062   16.0   2.3   35   40-77     20-54  (191)
405 >2a35_A Hypothetical protein P  39.2      25 0.00073   15.4   2.7   34   52-87      9-42  (215)
406 >2iyv_A Shikimate kinase, SK;   39.1      15 0.00043   17.1   1.5   23   46-71      5-27  (169)
407 >3ipo_A Putative thiosulfate s  38.9      16 0.00047   16.8   1.7   34  115-148    78-115 (118)
408 >2vli_A Antibiotic resistance   38.7      14  0.0004   17.3   1.3   26   46-74      8-33  (183)
409 >1fx0_A ATP synthase alpha cha  38.7      23 0.00069   15.6   2.5   99   50-157    73-184 (277)
410 >2r6h_A NADH:ubiquinone oxidor  38.6      25 0.00075   15.4   2.7   37   43-83      5-42  (139)
411 >3lnc_A Guanylate kinase, GMP   38.6      12 0.00037   17.6   1.1   34   43-80     26-59  (166)
412 >1e6c_A Shikimate kinase; phos  38.5      15 0.00045   16.9   1.5   18   55-72     11-28  (173)
413 >1u7z_A Coenzyme A biosynthesi  38.3      26 0.00076   15.3   3.8   38   45-87     24-61  (226)
414 >3fdi_A Uncharacterized protei  38.1      13  0.0004   17.3   1.2   36   45-82      7-42  (201)
415 >2jg6_A DNA-3-methyladenine gl  38.0      22 0.00066   15.8   2.3   19   59-77     17-35  (65)
416 >2zej_A Dardarin, leucine-rich  37.9      16 0.00047   16.8   1.6   21   44-67      3-23  (72)
417 >3fb4_A Adenylate kinase; psyc  37.9      16 0.00047   16.8   1.5   24   55-78      9-32  (169)
418 >2rhm_A Putative kinase; ZP_00  37.5      15 0.00044   17.0   1.4   27   54-80     13-39  (193)
419 >2bme_A RAB4A, RAS-related pro  37.3      16 0.00048   16.8   1.5   34   41-77      8-41  (186)
420 >3bbp_A RAB-6, RAS-related pro  37.0      18 0.00053   16.5   1.7   26   40-68     13-38  (211)
421 >1zbd_A Rabphilin-3A; G protei  37.0      13 0.00039   17.4   1.0   26   40-68      5-30  (203)
422 >1qfj_A Protein (flavin reduct  37.0      27 0.00079   15.2   3.2   36   42-81      5-40  (136)
423 >1yt8_A Thiosulfate sulfurtran  37.0      22 0.00064   15.9   2.1   36  115-150    83-122 (127)
424 >1wcw_A Uroporphyrinogen III s  36.9      15 0.00044   17.0   1.3   33  218-250    80-112 (114)
425 >2ew1_A RAS-related protein RA  36.9      16 0.00047   16.8   1.4   25   41-68     24-48  (201)
426 >2z43_A DNA repair and recombi  36.8     9.6 0.00028   18.4   0.3   27   55-81     28-54  (236)
427 >1oix_A RAS-related protein RA  36.8      17 0.00049   16.7   1.5   25   41-68     27-51  (191)
428 >1xq6_A Unknown protein; struc  36.8      27  0.0008   15.2   4.0   30   52-83      8-37  (253)
429 >2bi7_A UDP-galactopyranose mu  36.7      27  0.0008   15.2   4.0   23   61-83     13-35  (119)
430 >1qsg_A Enoyl-[acyl-carrier-pr  36.7      27  0.0008   15.2   3.7   32   52-83     13-44  (265)
431 >2wmy_A WZB, putative acid pho  36.6      16 0.00048   16.8   1.4   88   42-149     9-96  (150)
432 >1e4v_A Adenylate kinase; tran  36.6      17  0.0005   16.6   1.5   18   55-72      9-26  (214)
433 >2gjx_A Beta-hexosaminidase al  36.4      27 0.00081   15.1   5.2   30  130-159   197-227 (323)
434 >2fts_A Gephyrin; gephyrin, ne  36.3      27 0.00081   15.1   4.4   73  176-248    78-165 (174)
435 >3g7q_A Valine-pyruvate aminot  36.3      16 0.00048   16.7   1.4   24   55-78     32-56  (70)
436 >3hdg_A Uncharacterized protei  36.2      28 0.00081   15.1   3.9   26  116-141    33-58  (137)
437 >2r44_A Uncharacterized protei  36.1     8.8 0.00026   18.7   0.0   30   40-72     43-72  (226)
438 >1k66_A Phytochrome response r  36.0      26 0.00078   15.2   2.4   25  117-141    35-69  (149)
439 >1zuh_A Shikimate kinase; alph  35.8      18 0.00053   16.5   1.5   18   54-71     15-32  (168)
440 >1w7j_A Myosin VA; motor prote  35.8      22 0.00066   15.8   2.0   51  226-291   222-272 (306)
441 >1r6b_X CLPA protein; AAA+, N-  35.7      28 0.00083   15.1   3.9   25   46-73     52-76  (213)
442 >3ffh_A Histidinol-phosphate a  35.5      28 0.00083   15.0   5.9  121   56-179     7-164 (170)
443 >2hrz_A AGR_C_4963P, nucleosid  35.5      27 0.00079   15.2   2.4   31   52-84     18-48  (342)
444 >1r2q_A RAS-related protein RA  35.4      16 0.00048   16.7   1.3   23   43-68      6-28  (170)
445 >3kqn_A Serine protease/ntpase  35.3      28 0.00084   15.0   2.8   35  148-182   123-157 (242)
446 >1dbw_A Transcriptional regula  35.3      28 0.00084   15.0   4.5   26  116-141    29-54  (126)
447 >1krh_A Benzoate 1,2-dioxygena  35.1      29 0.00085   15.0   2.7   31   53-83     11-41  (133)
448 >1uz5_A MOEA protein, 402AA lo  35.1      29 0.00085   15.0   4.4   68  175-244    78-156 (168)
449 >1gwn_A RHO-related GTP-bindin  34.9      19 0.00056   16.3   1.6   25   41-68     26-50  (205)
450 >3if2_A Aminotransferase; YP_2  34.9      25 0.00075   15.4   2.2   28   49-77     35-63  (90)
451 >1qyc_A Phenylcoumaran benzyli  34.8      29 0.00085   15.0   3.8   33   52-86      8-40  (308)
452 >2zwm_A Transcriptional regula  34.8      29 0.00086   15.0   3.6   25  117-141    29-53  (130)
453 >1zd8_A GTP:AMP phosphotransfe  34.8      15 0.00045   16.9   1.1   24   46-72     10-33  (227)
454 >3gh5_A HEX1, beta-hexosaminid  34.8      29 0.00086   15.0   5.0   30  130-159   184-213 (313)
455 >1fnb_A Ferredoxin-NADP+ reduc  34.7      19 0.00055   16.3   1.5   27   43-73      7-33  (159)
456 >2bcg_Y Protein YP2, GTP-bindi  34.7      19 0.00056   16.3   1.5   25   41-68      6-30  (206)
457 >1v5w_A DMC1, meiotic recombin  34.7      12 0.00034   17.8   0.4   27   55-81     28-54  (240)
458 >2eix_A NADH-cytochrome B5 red  34.6      23 0.00069   15.6   2.0   21   53-73     12-32  (133)
459 >2c29_D Dihydroflavonol 4-redu  34.5      29 0.00086   14.9   3.9   33   52-86      9-41  (337)
460 >1tmy_A CHEY protein, TMY; che  34.5      17 0.00051   16.5   1.3   44  118-161    31-84  (120)
461 >2hi0_A Putative phosphoglycol  34.5      19 0.00055   16.3   1.5   26   60-85     24-49  (152)
462 >1tvc_A Methane monooxygenase   34.4      29 0.00087   14.9   4.4   34   44-81      5-38  (137)
463 >1ksh_A ARF-like protein 2; sm  34.4      17 0.00052   16.5   1.3   26   39-67     14-39  (186)
464 >1db3_A GDP-mannose 4,6-dehydr  34.4      29 0.00087   14.9   3.8   33   52-86      5-37  (190)
465 >1y63_A LMAJ004144AAA protein;  34.3      16 0.00047   16.8   1.1   24   46-72     13-36  (184)
466 >3fho_A ATP-dependent RNA heli  34.2      30 0.00087   14.9   3.1   20  229-248   238-257 (326)
467 >2gas_A Isoflavone reductase;   34.1      30 0.00088   14.9   3.0   33   52-86      6-38  (144)
468 >2iye_A Copper-transporting AT  34.1      30 0.00088   14.9   2.7   89   49-157    28-122 (164)
469 >2a9k_A RAS-related protein RA  34.0      21 0.00061   16.0   1.6   25   41-68     16-40  (187)
470 >1m7b_A RND3/RHOE small GTP-bi  34.0      20  0.0006   16.1   1.6   27   39-68      3-29  (184)
471 >3dxb_A Thioredoxin N-terminal  34.0      30 0.00088   14.9   4.3   34   42-75      2-35  (102)
472 >2gkg_A Response regulator hom  33.9      30 0.00088   14.9   4.0   29  116-144    31-59  (127)
473 >1sb8_A WBPP; epimerase, 4-epi  33.9      30 0.00088   14.9   4.6   33   52-86     31-63  (352)
474 >2cu2_A Putative mannose-1-pho  33.8      18 0.00053   16.5   1.3   39   42-87     24-62  (263)
475 >2qdx_A Ferredoxin reductase;   33.7      14 0.00042   17.2   0.7   34   44-81      8-41  (158)
476 >2bgi_A Ferredoxin-NADP(H) red  33.6      17 0.00051   16.5   1.2   35   43-81      8-42  (160)
477 >1y1p_A ARII, aldehyde reducta  33.5      30  0.0009   14.8   4.1   30   52-83     15-44  (342)
478 >1d1q_A Tyrosine phosphatase (  33.5      30  0.0009   14.8   3.4   93   42-151     8-104 (161)
479 >3be4_A Adenylate kinase; mala  33.5      21 0.00061   16.0   1.5   22   46-70      8-29  (153)
480 >1lw7_A Transcriptional regula  33.3      14  0.0004   17.3   0.6   23   46-71     12-34  (204)
481 >1fdr_A Flavodoxin reductase;   33.1      22 0.00065   15.8   1.6   34   44-81      8-41  (149)
482 >1cu1_A Protein (protease/heli  33.1      31 0.00091   14.8   2.8  122  150-292   125-250 (283)
483 >3ek2_A Enoyl-(acyl-carrier-pr  33.0      31 0.00091   14.8   3.7   32   52-83     18-49  (271)
484 >2jk1_A HUPR, hydrogenase tran  33.0      22 0.00064   15.9   1.6   26  116-141    26-51  (139)
485 >2gf9_A RAS-related protein RA  33.0      21 0.00063   15.9   1.5   25   41-68     20-44  (189)
486 >2b6h_A ADP-ribosylation facto  32.8      18 0.00054   16.4   1.2   22   41-65     27-48  (192)
487 >1c1y_A RAS-related protein RA  32.8      24  0.0007   15.6   1.8   22   44-68      4-25  (167)
488 >1xhf_A DYE resistance, aerobi  32.8      31 0.00092   14.7   4.1   26  116-141    29-54  (123)
489 >1umk_A B5R, NADH-cytochrome B  32.6      22 0.00064   15.8   1.6   22   52-73      5-26  (129)
490 3cf2_A P97VCP IN COMPLEX WITH   32.5      15 0.00044   17.0   0.7   30   46-81    241-270 (806)
491 >2ged_A SR-beta, signal recogn  32.5      31 0.00093   14.7   3.5   28   38-68     43-70  (193)
492 >2v6g_A Progesterone 5-beta-re  32.4      28 0.00082   15.1   2.1   32   52-85      5-36  (364)
493 >2cnd_A NADH-dependent nitrate  32.3      23 0.00068   15.7   1.6   35   43-81     20-56  (154)
494 >3kcn_A Adenylate cyclase homo  32.3      25 0.00073   15.5   1.8   50  112-161    25-85  (151)
495 >2rex_B RHO-related GTP-bindin  32.2      26 0.00076   15.3   1.9   26   40-68      7-32  (197)
496 >2v1x_A ATP-dependent DNA heli  32.1      32 0.00094   14.7   6.2   60  220-284    30-91  (138)
497 >1ny5_A Transcriptional regula  32.1      32 0.00094   14.7   4.1   29  116-144    26-54  (139)
498 >3bor_A Human initiation facto  32.0      28 0.00084   15.0   2.1   40  120-159   135-180 (237)
499 >2z2i_A PTH, peptidyl-tRNA hyd  32.0      12 0.00036   17.6   0.2   25  161-187    98-122 (191)
500 >3jvi_A Protein tyrosine phosp  32.0      32 0.00094   14.7   3.0   48   39-91      2-52  (161)

No 1  
>>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} (A:)
Probab=96.66  E-value=0.0057  Score=41.27  Aligned_cols=43  Identities=19%  Similarity=0.118  Sum_probs=34.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             988998230007888748999999998524731598760457877
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS   88 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~   88 (338)
                      .|||++.-  .+|+|||-+...|+..|+++|++|+++.-..++..
T Consensus         4 ~~vi~i~G--~~GsGKTTll~~l~~~l~~~g~kV~vi~~D~~~~~   46 (169)
T 1xjc_A            4 XNVWQVVG--YKHSGKTTLXEKWVAAAVREGWRVGTVKHHGHGGE   46 (169)
T ss_dssp             CCEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred             CEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             65999982--99998999999999999866995157525775654


No 2  
>>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens} (A:1-262)
Probab=96.25  E-value=0.0056  Score=41.37  Aligned_cols=147  Identities=12%  Similarity=0.043  Sum_probs=77.7

Q ss_pred             CCCCCCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE-CC--CCCHHHHCCHHHHHHHCC
Q ss_conf             338898899-82300078887489999999985247315987604578777755871-45--678877042123322057
Q gi|254780401|r   40 LHAPIPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVD-LE--KHSAYDVGDEPLLLARRA  115 (338)
Q Consensus        40 ~~~~~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~-~~--~~~~~~vGDEp~lla~~~  115 (338)
                      ..-+.||+. +|=   -|+|||.++..|+..++.+|+++++++--.++-....-... ..  ......++....++...+
T Consensus        70 ~~~~~~v~~l~G~---~GaGKTT~l~kla~~l~~~~~kv~vi~~D~~r~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  146 (262)
T 2www_A           70 GKPLAFRVGLSGP---PGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRG  146 (262)
T ss_dssp             TCCSCEEEEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC----
T ss_pred             CCCCCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHCCCHHCCCCHHHH
T ss_conf             8887217863079---9888999999999999858972889855898753143361102117765302221035671555


Q ss_pred             CCCC-CCCHHHHHHHHCCCCCCEEEECCC--C---CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf             6346-520122566410245747997183--2---234412306999961843356655376136521002556651454
Q gi|254780401|r  116 VTIV-TSDRKIGVQMLLQEGVDIIIMDDG--F---HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI  189 (338)
Q Consensus       116 pv~V-~~~R~~~~~~~~~~~~diiIlDDG--f---Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v  189 (338)
                      .-.- ...=..++..+...+.|.++.+-.  +   .+.....+.-++++|+..+---.        ++ ....++.+|.+
T Consensus       147 ~~~~~~~~~~d~i~~~~~~~~d~~~ie~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~-~~~~~~~ad~i  217 (262)
T 2www_A          147 TLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQ--------GI-KRGIIEMADLV  217 (262)
T ss_dssp             -----CTTHHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC---------------------CCSCSEE
T ss_pred             HHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHCCCCHHHCCCCEEEEEECCCCCHHHH--------HH-HHHHHHHCEEE
T ss_conf             4212103169999998645999689862210012311313663468884488622478--------88-77698646079


Q ss_pred             HHCCCCHHH
Q ss_conf             420441245
Q gi|254780401|r  190 LYVGNKKNV  198 (338)
Q Consensus       190 i~~~~~~~~  198 (338)
                      |+||.+...
T Consensus       218 iitK~D~~~  226 (262)
T 2www_A          218 AVTKSDGDL  226 (262)
T ss_dssp             EECCCSGGG
T ss_pred             EEECCCCCC
T ss_conf             997655530


No 3  
>>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* (A:99-285)
Probab=96.03  E-value=0.024  Score=36.89  Aligned_cols=79  Identities=24%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCC
Q ss_conf             8998230007888748999999998524-7315987604578777755871456788770421233-220--57634652
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTS  121 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~  121 (338)
                      +..+|+   +|+|||-++.-||.+++.+ |+++++++=            |+..+.+    .|.+- .+.  ..++.+..
T Consensus        10 i~l~G~---~GvGKTT~a~~LA~~~~~~~g~~v~li~~------------D~~~~~~----~~~l~~~~~~~~~~~~~~~   70 (187)
T 2px0_A           10 IVLFGS---TGAGKTTTLAKLAAISMLEKHKKIAFITT------------DTYRIAA----VEQLKTYAELLQAPLEVCY   70 (187)
T ss_dssp             EEEEES---TTSSHHHHHHHHHHHHHHTTCCCEEEEEC------------CCSSTTH----HHHHHHHHTTTTCCCCBCS
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHHHCCCCCEEECC------------CCCCHHH----HHHHHHHHHHCCCCCHHHC
T ss_conf             999736---66326669999999998742234412037------------7564779----9999999865122312221


Q ss_pred             CHHHHHHHHC-CCCCCEEEECCC
Q ss_conf             0122566410-245747997183
Q gi|254780401|r  122 DRKIGVQMLL-QEGVDIIIMDDG  143 (338)
Q Consensus       122 ~R~~~~~~~~-~~~~diiIlDDG  143 (338)
                      +-......+. ..+.|+||.|-.
T Consensus        71 ~~~~~~~~~~~~~~~d~ViIDt~   93 (187)
T 2px0_A           71 TKEEFQQAKELFSEYDHVFVDTA   93 (187)
T ss_dssp             SHHHHHHHHHHGGGSSEEEEECC
T ss_pred             CHHHHHHHHHHHCCCEEEEEECC
T ss_conf             44689999984054328998336


No 4  
>>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} (A:)
Probab=95.96  E-value=0.025  Score=36.69  Aligned_cols=43  Identities=23%  Similarity=0.468  Sum_probs=33.1

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             388988998230007888748999999998524731598760457
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +-+.|||.|.-  -.|+|||-+...|+++|+++|++++++.---+
T Consensus         3 ~~~~~vi~i~G--~~GsGKTTll~~L~~~l~~~g~kv~~i~~d~~   45 (174)
T 1np6_A            3 KTMIPLLAFAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             --CCCEEEEEC--CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CEEEEEEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             62610799992--59998999999999999977984889982588


No 5  
>>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:1-303)
Probab=95.67  E-value=0.013  Score=38.85  Aligned_cols=44  Identities=23%  Similarity=0.185  Sum_probs=37.4

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             898899823000788874899999999852473159876045787
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      +.+||+|.|. -||+|||.++.-||..|.++|++|.++.--..+.
T Consensus         6 ~~~vi~v~s~-KGGvGKTT~a~~LA~~la~~G~rVlliD~D~~~~   49 (303)
T 1ihu_A            6 NIPPYLFFTG-KGGVGKTSISCATAIRLAEQGKRVLLVSTDPASN   49 (303)
T ss_dssp             SCCSEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred             CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             9983899988-9705799999999999997899899996789998


No 6  
>>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} (A:)
Probab=95.56  E-value=0.014  Score=38.60  Aligned_cols=154  Identities=8%  Similarity=-0.074  Sum_probs=77.7

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC
Q ss_conf             38898899823000788874899999999852473159876045787777558714567887704212332205763465
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT  120 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~  120 (338)
                      ..+.|+|+|.  =-.|+|||-++..|+..+...+....+.-++.....................+.+.......+.....
T Consensus        11 ~~~~~~i~i~--G~~gaGKTTl~~~Ll~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   88 (262)
T 1yrb_A           11 GMASMIVVFV--GTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESY   88 (262)
T ss_dssp             TCCCEEEEEE--CSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEE--ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHEECCCCEEEEH
T ss_conf             8889889999--38998399999999998700988999964777536787734137777641100244310368713002


Q ss_pred             CCHHH------HHHHHCCCCCCEEEECCCC-------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf             20122------5664102457479971832-------------2344123069999618433566553761365210025
Q gi|254780401|r  121 SDRKI------GVQMLLQEGVDIIIMDDGF-------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR  181 (338)
Q Consensus       121 ~~R~~------~~~~~~~~~~diiIlDDGf-------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~  181 (338)
                      .....      +.......+.|+++.|--=             ....+..+.-|+++|+.++---....+.+..++-...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~iid~pG~~~~~~~~~~~~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~~~~~~~  168 (262)
T 1yrb_A           89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL  168 (262)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             76888899999999863167642303543204578999988899887436559998436545672378889999999887


Q ss_pred             HHHHHHHHHHCCCCH
Q ss_conf             566514544204412
Q gi|254780401|r  182 QLSYVDAILYVGNKK  196 (338)
Q Consensus       182 ~l~rad~vi~~~~~~  196 (338)
                      .++-++++++||.+.
T Consensus       169 ~i~~~~iiviNK~D~  183 (262)
T 1yrb_A          169 RLGATTIPALNKVDL  183 (262)
T ss_dssp             HHTSCEEEEECCGGG
T ss_pred             HCCCCCEEEECCCCC
T ss_conf             537980577616554


No 7  
>>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} (A:)
Probab=95.51  E-value=0.025  Score=36.77  Aligned_cols=79  Identities=25%  Similarity=0.334  Sum_probs=49.3

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCC
Q ss_conf             899823000788874899999999852473159876045787777558714567887704212332-20--576346520
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSD  122 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~  122 (338)
                      |..||   .-|.|||-++.-||.+|.++|++|++++=            |+..    -.+=|.+.. ++  ..|+.+..+
T Consensus       107 i~~vG---ptGvGKTTTiaKlA~~~~~~g~kv~lit~------------Dt~R----~ga~eQL~~~a~~~~vp~~~~~~  167 (306)
T 1vma_A          107 IMVVG---VNGTGKTTSCGKLAKMFVDEGKSVVLAAA------------DTFR----AAAIEQLKIWGERVGATVISHSE  167 (306)
T ss_dssp             EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEE------------CTTC----HHHHHHHHHHHHHHTCEEECCST
T ss_pred             EEECC---CCCCCCCHHHHHHHHHHHHCCCEEEEEEC------------CCCC----CHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             87415---55667641699999999857984799833------------6533----10577888887514754215677


Q ss_pred             HHH---HH----HHHCCCCCCEEEECCC
Q ss_conf             122---56----6410245747997183
Q gi|254780401|r  123 RKI---GV----QMLLQEGVDIIIMDDG  143 (338)
Q Consensus       123 R~~---~~----~~~~~~~~diiIlDDG  143 (338)
                      ...   ++    +.+...++|+|+.|=.
T Consensus       168 ~~~~~~~~~~~i~~~~~~~~d~VlIDTa  195 (306)
T 1vma_A          168 GADPAAVAFDAVAHALARNKDVVIIDTA  195 (306)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf             8668988899999999869997998541


No 8  
>>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} (A:1-204)
Probab=95.31  E-value=0.0053  Score=41.53  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-CCC
Q ss_conf             8988998230007888748999999998524731598760457877775587145678877042123322057634-652
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-VTS  121 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-V~~  121 (338)
                      ++||+.|+-.  -|+|||.+...|+++++  |.+++++.-..++..-..-...       +.+.+-..+...+.-. ...
T Consensus         3 k~~v~~v~Gf--lGsGKTTll~~l~~~~~--~~k~~vi~~d~~~~~~d~~l~~-------~~~~~~~~~~~g~~~~~~~~   71 (204)
T 1nij_A            3 PIAVTLLTGF--LGAGKTTLLRHILNEQH--GYKIAVIENEFGEVSVDDQLIG-------DRATQIKTLTNGCICCSRSN   71 (204)
T ss_dssp             CEEEEEEEES--SSSSCHHHHHHHHHSCC--CCCEEEECSSCCSCCEEEEEEC-------TTSCEEEEETTSCEEECTTS
T ss_pred             CCCEEEEEEC--CCCCHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHH-------CCCCEEEEECCCCEEECCCH
T ss_conf             6578999718--78999999999983778--9968999778875200399983-------78952998628831411525


Q ss_pred             CHHHHHHH------HCCCCCCEEEEC-CCC---------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf             01225664------102457479971-832---------------23441230699996184335665537613652100
Q gi|254780401|r  122 DRKIGVQM------LLQEGVDIIIMD-DGF---------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL  179 (338)
Q Consensus       122 ~R~~~~~~------~~~~~~diiIlD-DGf---------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~  179 (338)
                      +-..+.+.      +...++|.|+.| .|.               .+.....+.-++++|+..+-  ..+--.+.+++  
T Consensus        72 ~~~~~l~~~~~~~~a~~~~~d~ilie~~G~~~~~~~~~~~l~~~~~~~~~~~~~vi~vvda~~~~--~~~~~~~~~~~--  147 (204)
T 1nij_A           72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD--EQMNQFTIAQS--  147 (204)
T ss_dssp             CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH--HHHHHCHHHHH--
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCEEEECHHHHHH--HHHHHHHHHHH--
T ss_conf             68999999999986167777669995167668699999986666424638865477831477788--86423255654--


Q ss_pred             HHHHHHHHHHHHCCCCH
Q ss_conf             25566514544204412
Q gi|254780401|r  180 SRQLSYVDAILYVGNKK  196 (338)
Q Consensus       180 ~~~l~rad~vi~~~~~~  196 (338)
                        .+.-||.+|+|+.+.
T Consensus       148 --q~~~ad~viitK~D~  162 (204)
T 1nij_A          148 --QVGYADRILLTKTDV  162 (204)
T ss_dssp             --HHHTCSEEEEECTTT
T ss_pred             --HHCCCCEEEECCCCC
T ss_conf             --303477466301101


No 9  
>>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} (A:)
Probab=95.28  E-value=0.02  Score=37.42  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8899823000788874899999999852473159876045
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      .||+|.|. =||+|||-++.-||-.|.++|++++++-=--
T Consensus         3 kvI~v~s~-KGGvGKTT~a~nlA~~La~~g~kvlliD~D~   41 (263)
T 1hyq_A            3 RTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVDADI   41 (263)
T ss_dssp             EEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             59999899-9988599999999999996899899996889


No 10 
>>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} (A:1-61,A:124-208)
Probab=95.18  E-value=0.03  Score=36.21  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899823000788874899999999852473159876
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ||.|  .=.+|+|||-++..|+..|+++|.+|+++|
T Consensus        24 vI~i--~G~~GsGKTT~~~~La~~l~~~G~~v~~~~   57 (146)
T 3c8u_A           24 LVAL--SGAPGSGKSTLSNPLAAALSAQGLPAEVVP   57 (146)
T ss_dssp             EEEE--ECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEE--ECCCCCCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf             9998--898999899999999999602145540312


No 11 
>>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* (A:)
Probab=95.02  E-value=0.03  Score=36.16  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             4338898899823000788874899999999852473159876
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ...-+.+||.|.+. -||+|||-++..||..|.++|++++++-
T Consensus        21 ~~~~~~kvI~v~s~-kGGvGKTtia~~LA~~la~~g~~vl~id   62 (251)
T 3fgn_A           21 YFQSHMTILVVTGT-GTGVGKTVVCAALASAARQAGIDVAVCK   62 (251)
T ss_dssp             -CCSSCEEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             35405986899869-9996199999999999996899499977


No 12 
>>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP} (A:)
Probab=94.98  E-value=0.027  Score=36.44  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8899823000788874899999999852473159876
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .||+|.|- =||.|||-++..||-.|..+|+++.++-
T Consensus         1 ~II~v~n~-KGGVGKTT~a~nLA~~la~~G~~vl~id   36 (209)
T 3cwq_A            1 XIITVASF-KGGVGKTTTAVHLSAYLALQGETLLIDG   36 (209)
T ss_dssp             CEEEEEES-STTSSHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             98999879-9971799999999999997899899968


No 13 
>>1qzx_A SRP54, signal recognition 54 kDa protein; signal recognition particle, protein targeting, signaling protein; 4.00A {Sulfolobus solfataricus} (A:98-290)
Probab=94.90  E-value=0.027  Score=36.48  Aligned_cols=82  Identities=23%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC-CHHHHHHHC------CC
Q ss_conf             98899823000788874899999999852473159876045787777558714567887704-212332205------76
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG-DEPLLLARR------AV  116 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG-DEp~lla~~------~p  116 (338)
                      .+||.+.-  .+|+|||-++..|+.+|+++|+++++++---++                 .| |+-+.....      .+
T Consensus         7 ~~vi~itG--~~GsGKTT~~~~L~~~l~~~g~~v~~i~~D~~~-----------------~~~~~~l~~~~~~~~~~~~~   67 (193)
T 1qzx_A            7 PFIIMLVG--VQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR-----------------PAAYDQLLQLGNQIGVQVYG   67 (193)
T ss_dssp             SEEEEEEC--SSSSSTTTHHHHHHHHHHHTTCCEEEEECCTTS-----------------THHHHHHHHHHHHTTCEEEC
T ss_pred             CEEEEEEC--CCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC-----------------CCHHHHHHHHHCCCCEEEEC
T ss_conf             85999975--778884204999999998659830477426557-----------------54788899997037714731


Q ss_pred             CCCCCCHHHHHH----HHCCCCCCEEEECCCC
Q ss_conf             346520122566----4102457479971832
Q gi|254780401|r  117 TIVTSDRKIGVQ----MLLQEGVDIIIMDDGF  144 (338)
Q Consensus       117 v~V~~~R~~~~~----~~~~~~~diiIlDDGf  144 (338)
                      ...+.++....+    .+.....|+++.|-..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~t~g   99 (193)
T 1qzx_A           68 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAG   99 (193)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             55556778899999998751489889987777


No 14 
>>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:1-44,A:95-171)
Probab=94.80  E-value=0.025  Score=36.77  Aligned_cols=31  Identities=16%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             0078887489999999985247315987604
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      -..|+|||-++..|+++|+++|+++++++.-
T Consensus         9 G~~G~GKTT~~~~l~~~l~~~g~~v~vi~~D   39 (121)
T 2f1r_A            9 GTSDSGKTTLITRMMPILRERGLRVAVVKRH   39 (121)
T ss_dssp             ESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEEECEE
T ss_conf             8899539999999983418788689990664


No 15 
>>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} (A:1-73,A:153-290)
Probab=94.77  E-value=0.11  Score=32.26  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             EECCEEECCCCCCHHHHHHHHHHHHC---CCCEEEEE
Q ss_conf             98230007888748999999998524---73159876
Q gi|254780401|r   48 CVGGFVMGGTGKTPTALAIAKAVIDK---NLKPGFLS   81 (338)
Q Consensus        48 ~VGNitvGGtGKTP~v~~l~~~l~~~---g~~~~ils   81 (338)
                      .||=.=.-|||||-++..|+++|+++   |++++++|
T Consensus        33 vigi~G~QGsGKTT~~~~L~~~L~~~~~~~lkv~~~S   69 (211)
T 1odf_A           33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS   69 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9983789878899999999999997507887079953


No 16 
>>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} (A:)
Probab=94.76  E-value=0.023  Score=36.93  Aligned_cols=40  Identities=28%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             88988998230007888748999999998524731598760
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      -.-.||+|-|. -||+|||.++.-||..|.++|++++++.-
T Consensus        34 ~~~~iI~v~s~-KGGvGKTTia~~lA~~LA~~g~~Vllid~   73 (298)
T 2oze_A           34 NEAIVILNNYF-KGGVGKSKLSTMFAYLTDKLNLKVLMIDK   73 (298)
T ss_dssp             CSCEEEEECCS-SSSSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEEECCC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             84499995889-88826999999999999976998389706


No 17 
>>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} (A:118-328)
Probab=94.69  E-value=0.05  Score=34.62  Aligned_cols=42  Identities=21%  Similarity=0.270  Sum_probs=32.2

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCC
Q ss_conf             38898899823000788874899999999-8524731598760457
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKA-VIDKNLKPGFLSRGYG   85 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~-l~~~g~~~~ilsRGYg   85 (338)
                      +.+.-|+.+|.   ||+|||-++..|+++ |++.|++|.++-==-+
T Consensus        19 ~~~~~ilv~G~---gGvGKTT~~~~La~~~l~~~g~~vl~vD~D~~   61 (211)
T 2npi_A           19 FEGPRVVIVGG---SQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ   61 (211)
T ss_dssp             SSCCCEEEEES---TTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred             CCCCEEEEECC---CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             25988999899---98788999999999998506982399976789


No 18 
>>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} (A:1-228)
Probab=94.58  E-value=0.033  Score=35.88  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=37.3

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             4338898899823000788874899999999852473159876045
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      .-.-+..||.|.|. -||.|||-++..||..|.++|++|.++---.
T Consensus        13 ~~~~~~kvi~v~s~-kGGvGKTT~a~~LA~~la~~G~~VlliD~D~   57 (228)
T 2ph1_A           13 RLGKIKSRIAVXSG-KGGVGKSTVTALLAVHYARQGKKVGILDADF   57 (228)
T ss_dssp             HHTTCSCEEEEECS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             HHCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             75078869999769-9988799999999999997799177518988


No 19 
>>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} (F:92-284)
Probab=94.57  E-value=0.042  Score=35.15  Aligned_cols=28  Identities=39%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             0788874899999999852473159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .||+|||-++..|+..|.++|+++++++
T Consensus        15 ~~GvGKTT~~~~La~~L~~~G~~v~vi~   42 (193)
T 1j8m_F           15 VQGTGKTTTAGKLAYFYKKKGFKVGLVG   42 (193)
T ss_dssp             SSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             6555621579999999996697641000


No 20 
>>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* (A:)
Probab=94.53  E-value=0.03  Score=36.20  Aligned_cols=43  Identities=23%  Similarity=0.130  Sum_probs=35.2

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             89889982300078887489999999985247315987604578
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +..||+|.|- =||+|||-++.-||..|.++|+++.+++=-..+
T Consensus        14 ~~~vIav~s~-KGGVGKTT~a~nLA~~La~~g~kVlvid~D~~~   56 (334)
T 3iqw_A           14 RSLRWIFVGG-KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH   56 (334)
T ss_dssp             TTCCEEEEEC-STTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred             CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             7866999969-997819999999999999689958999589998


No 21 
>>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} (A:)
Probab=94.47  E-value=0.034  Score=35.81  Aligned_cols=43  Identities=21%  Similarity=0.122  Sum_probs=35.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             89889982300078887489999999985247315987604578
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +..||+|-|- =||+|||-++.-||..|.++|++|.++.-=+..
T Consensus        17 ~~~vI~v~s~-KGGVGKTTva~nLA~~LA~~G~rVlliD~D~~~   59 (329)
T 2woo_A           17 TSLKWIFVGG-KGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAH   59 (329)
T ss_dssp             TTCCEEEEEC-SSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTC
T ss_pred             CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             7826999979-997849999999999999689938999689998


No 22 
>>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} (A:)
Probab=94.40  E-value=0.034  Score=35.75  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             0788874899999999852473159876045787
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      -||+|||-++..||..|.++|++|.+|.=-..+.
T Consensus         9 KGGvGKTT~a~~lA~~LA~~g~kVlliD~D~~~~   42 (269)
T 1cp2_A            9 KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD   42 (269)
T ss_dssp             CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             9977699999999999997899689995889998


No 23 
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:150-344,A:555-574)
Probab=94.36  E-value=0.24  Score=29.71  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=25.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .|||||-++..|++.+.+.|+++.+++
T Consensus        64 pGTGKT~~~~al~~~~~~~~~~Vl~~A   90 (215)
T 3e1s_A           64 PGTGKSTTTKAVADLAESLGLEVGLCA   90 (215)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             531179999999999986697599414


No 24 
>>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} (A:)
Probab=94.29  E-value=0.034  Score=35.81  Aligned_cols=37  Identities=19%  Similarity=0.136  Sum_probs=29.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +|.|.+ +-||+|||-++..||..|.++|++|.++.-=
T Consensus         3 ~I~v~s-~kGGvGKTTvs~~LA~~La~~g~kVl~id~D   39 (220)
T 2qmo_A            3 XLFISA-TNTNAGKTTCARLLAQYCNACGVKTILLKPI   39 (220)
T ss_dssp             EEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEECCE
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             899987-9999749999999999999789969998861


No 25 
>>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* (1:)
Probab=94.28  E-value=0.038  Score=35.45  Aligned_cols=43  Identities=21%  Similarity=0.226  Sum_probs=35.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             89889982300078887489999999985247315987604578
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +-.||+|.|- -||+|||-++..||..|.++|++|.++-=-..+
T Consensus         5 ~~kvI~v~s~-KGGvGKTTia~~LA~~la~~g~kVlliD~D~~~   47 (257)
T 1wcv_1            5 KVRRIALANQ-KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG   47 (257)
T ss_dssp             CCCEEEECCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             8769999879-998859999999999999789978999679999


No 26 
>>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} (E:)
Probab=94.27  E-value=0.035  Score=35.73  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             07888748999999998524731598760457
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      =||+|||-++.-||..|.++|+++.++-==..
T Consensus        10 KGGVGKTT~a~nLA~~la~~G~rvlliD~D~~   41 (289)
T 2afh_E           10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99888999999999999988998899952899


No 27 
>>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A* (A:)
Probab=94.26  E-value=0.035  Score=35.70  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=32.9

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8899823000788874899999999852473159876045787
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      .||.+++  -||+|||-++.-||..|.++|++|.+|.--..+.
T Consensus        42 ~Ii~~s~--KGGvGKTT~a~~lA~~La~~g~kVllID~D~~~~   82 (307)
T 3end_A           42 KVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHD   82 (307)
T ss_dssp             EEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCC
T ss_pred             EEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             3999989--9874799999999999998799289994379986


No 28 
>>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} (A:)
Probab=94.21  E-value=0.036  Score=35.62  Aligned_cols=37  Identities=19%  Similarity=0.104  Sum_probs=30.7

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             88998230007888748999999998524731598760
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .+|.|.+. =||+|||-++..||..|.++|++|.++-=
T Consensus         2 kvI~v~s~-KGGvGKTtia~~La~~La~~G~~Vl~id~   38 (224)
T 1byi_A            2 KRYFVTGT-DTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             52999979-99953999999999999977994999884


No 29 
>>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} (A:)
Probab=94.20  E-value=0.057  Score=34.21  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             889982300078887489999999985247315987604
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .||+|.|. -||.|||-++.-||..|.++|+++.++-=-
T Consensus         3 kvI~v~s~-KGGvGKTT~a~nLA~~LA~~g~kvlliD~d   40 (237)
T 1g3q_A            3 RIISIVSG-KGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             EEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             58999899-999839999999999999779988999799


No 30 
>>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:304-589)
Probab=94.13  E-value=0.038  Score=35.40  Aligned_cols=42  Identities=24%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             8988998230007888748999999998524731598760457
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      .-.||+|.|- =||.|||-++..||..|.++|++|++|-==..
T Consensus        22 ~~~vI~v~s~-KGGVGKTT~a~~LA~~La~~g~rVllID~D~~   63 (286)
T 1ihu_A           22 NEHGLIMLMG-KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   63 (286)
T ss_dssp             TSCEEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             1858999948-99872699999999999968993799956898


No 31 
>>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} (A:)
Probab=94.05  E-value=0.074  Score=33.37  Aligned_cols=38  Identities=18%  Similarity=0.305  Sum_probs=33.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             9889982300078887489999999985247315987604
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .+||+|.-.  .|+|||-++..|++.|...|.+++++|+-
T Consensus         5 p~iIgI~G~--sGSGKTTla~~L~~~L~~~~~~~~~i~~D   42 (290)
T 1a7j_A            5 HPIISVTGS--SGAGTSTVKHTFDQIFRREGVKAVSIEGD   42 (290)
T ss_dssp             SCEEEEESC--C---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             979999899--87819999999999970569976998377


No 32 
>>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} (A:139-373)
Probab=94.03  E-value=0.037  Score=35.56  Aligned_cols=42  Identities=24%  Similarity=0.172  Sum_probs=34.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             9889982300078887489999999985247315987604578
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      ..||+|.+. -||+|||-++..||..|.++|++|.++---..+
T Consensus         5 ~~vI~v~s~-KGGvGKTT~a~~LA~~la~~G~~VlliD~D~~~   46 (235)
T 3fkq_A            5 SSVVIFTSP-CGGVGTSTVAAACAIAHANXGKKVFYLNIEQCG   46 (235)
T ss_dssp             CEEEEEECS-STTSSHHHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             989999899-998459999999999999589939999589999


No 33 
>>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* (A:)
Probab=93.89  E-value=0.026  Score=36.63  Aligned_cols=30  Identities=27%  Similarity=0.251  Sum_probs=27.5

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             078887489999999985247315987604
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      -||+|||-++.-||..|.++|++|.++.==
T Consensus         8 KGGvGKTT~a~~lA~~La~~g~kVlliD~D   37 (254)
T 3kjh_A            8 KGGVGKTTVAAGLIKIMASDYDKIYAVDGD   37 (254)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             882259999999999999789979999779


No 34 
>>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:1-297)
Probab=93.82  E-value=0.032  Score=35.98  Aligned_cols=36  Identities=19%  Similarity=0.096  Sum_probs=31.3

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8899823000788874899999999852473159876
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -||+|.|. =||+|||-++.-||..|.+.|++++++-
T Consensus         2 aiI~v~s~-KGGVGKTT~a~nLA~~LA~~g~~v~li~   37 (297)
T 3igf_A            2 ALILTFLG-KSGVARTKIAIAAAKLLASQGKRVLLAG   37 (297)
T ss_dssp             CEEEEEEC-SBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             79999988-9878299999999999997899599991


No 35 
>>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls} (A:)
Probab=93.53  E-value=0.073  Score=33.44  Aligned_cols=40  Identities=18%  Similarity=0.079  Sum_probs=31.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEECC
Q ss_conf             9889982300078887489999999985247-3159876045
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRGY   84 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRGY   84 (338)
                      ..||+|.|. -||+|||.++.-||..|.++| +++.++---.
T Consensus         4 ~kvI~v~s~-KGGvGKTT~a~~LA~~La~~g~~~vllid~d~   44 (245)
T 3ea0_A            4 KRVFGFVSA-KGGDGGSCIAANFAFALSQEPDIHVLAVDISL   44 (245)
T ss_dssp             CEEEEEEES-STTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             879999899-99665999999999999985899899997989


No 36 
>>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* (A:1-286)
Probab=93.37  E-value=0.68  Score=26.52  Aligned_cols=131  Identities=18%  Similarity=0.124  Sum_probs=71.1

Q ss_pred             CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCC---HHHHCCHHHHHHHC
Q ss_conf             643388988998230007888748999999998524731598760457877775587145678---87704212332205
Q gi|254780401|r   38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS---AYDVGDEPLLLARR  114 (338)
Q Consensus        38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~---~~~vGDEp~lla~~  114 (338)
                      .....+.|||.|    +|=.|||.++.+|+..|++.|++++...-|..........+.....+   .....+|.......
T Consensus        43 ~~~~~~~~vI~V----TGT~GKTTt~~li~~iL~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (286)
T 1w78_A           43 GVLKPAPFVFTV----AGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGD  118 (286)
T ss_dssp             TCSSCSSEEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             996425988999----8882289999999999998899889978986124344078754304468765567777776423


Q ss_pred             CCCCCCCCHHH---HHHHHCCCCCCEEEECCCCCCC-----CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf             76346520122---5664102457479971832234-----41230699996184335665537613652100
Q gi|254780401|r  115 AVTIVTSDRKI---GVQMLLQEGVDIIIMDDGFHSA-----DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL  179 (338)
Q Consensus       115 ~pv~V~~~R~~---~~~~~~~~~~diiIlDDGfQh~-----~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~  179 (338)
                        .........   +.......++|+.++.=+.++.     .+.+|+-++.     ..+.+++=-.|...|-+
T Consensus       119 --~~~~~~~~~~~~~~~~~~~~~~~~~v~E~~~~~~~~~~~~~~p~v~vit-----ni~~dHl~~~g~~~~~i  184 (286)
T 1w78_A          119 --ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVT-----SIALDHTDWLGPDRESI  184 (286)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTSGGGGSCCSEEEEC-----CCCSCCHHHHCSSHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCEEEECCHHHHH-----CCCCHHHHHHHHHHHHH
T ss_conf             --4630477889999998750387566302210444324302202222210-----00100244445677766


No 37 
>>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} (A:160-350)
Probab=93.30  E-value=0.18  Score=30.64  Aligned_cols=46  Identities=33%  Similarity=0.463  Sum_probs=36.8

Q ss_pred             CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             46433889889982300078887489999999985247315987604
Q gi|254780401|r   37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        37 ~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      ++....++|+|.|-- |--|+|||-++..|.+.|+++|+++....-|
T Consensus         3 ~~~~~~~~p~i~i~G-t~sg~GKTt~t~~L~~al~~rG~~v~~~k~G   48 (191)
T 2g0t_A            3 GGIYRKKIKVVGVFG-TDCVVGKRTTAVQLWERALEKGIKAGFLATG   48 (191)
T ss_dssp             SGGGGCCSEEEEEEE-SSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             410037874899955-7745138999999999999779972599707


No 38 
>>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A (A:103-398)
Probab=92.98  E-value=0.073  Score=33.41  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCC
Q ss_conf             98899823000788874899999999------8524731598760457
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKA------VIDKNLKPGFLSRGYG   85 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~------l~~~g~~~~ilsRGYg   85 (338)
                      ..||+|.|. -||+|||-++.-||..      |..+|++|.+|-=-..
T Consensus         6 ~~vI~v~s~-KGGvGKTT~a~nlA~~~~~~~~l~~~G~rVl~ID~D~q   52 (296)
T 3ez2_A            6 AYVIFISNL-KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ   52 (296)
T ss_dssp             CEEEEECCS-SSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred             CEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             759999668-99875899999999999961055525984799679874


No 39 
>>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A (A:106-403)
Probab=92.83  E-value=0.11  Score=32.20  Aligned_cols=46  Identities=24%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHH------HCCCCEEEEEECCCCCC
Q ss_conf             889889982300078887489999999985------24731598760457877
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVI------DKNLKPGFLSRGYGRKS   88 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~------~~g~~~~ilsRGYg~~~   88 (338)
                      -+..||+|-|. =||+|||-++.-||-+|.      ++|++|.++---.-+..
T Consensus         4 ~~~kvI~v~~~-KGGvGKTT~a~nlA~~la~~~~l~~~g~~VlviD~D~q~~~   55 (298)
T 3ez9_A            4 KSPYVIFVVNL-KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASS   55 (298)
T ss_dssp             CSCEEEEECCC---------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGG
T ss_pred             CCCEEEEEECC-CCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCH
T ss_conf             99759999781-78107899999999999842056658997899979987665


No 40 
>>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} (A:)
Probab=92.82  E-value=0.16  Score=31.08  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=34.3

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             388988998230007888748999999998524731598760
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .-+..||.|-+. -||.|||-++.-||..|.++|.++.++-=
T Consensus       101 ~~~~~vI~v~s~-kgGvGKTtia~~LA~~La~~g~~vlliD~  141 (299)
T 3cio_A          101 ETENNILMITGA-TPDSGKTFVSSTLAAVIAQSDQKVLFIDA  141 (299)
T ss_dssp             SCSCCEEEEEES-SSSSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             999839999899-97998899999999999977995899845


No 41 
>>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A* (A:)
Probab=92.45  E-value=0.11  Score=32.25  Aligned_cols=43  Identities=23%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHH--HHHCCCCEEEEEECCCC
Q ss_conf             898899823000788874899999999--85247315987604578
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKA--VIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~--l~~~g~~~~ilsRGYg~   86 (338)
                      +-.+|+|-|- =||+|||-++.-||..  |.++|++|.++.=-+..
T Consensus        16 ~~~iIav~s~-KGGVGKTT~a~nLA~a~~lA~~G~rVLviD~D~q~   60 (354)
T 2woj_A           16 TTHKWIFVGG-KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAH   60 (354)
T ss_dssp             SSCCEEEEEE-STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred             CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             9857999979-99760999999999999986589908999269999


No 42 
>>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} (A:1-231)
Probab=92.35  E-value=0.049  Score=34.63  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+.||   .-|+|||-++..|+++|+++|+++.+++-+
T Consensus        42 I~~vG---lpGsGKTT~a~~la~~l~~~g~~~~~i~~D   76 (231)
T 1bif_A           42 IVMVG---LPARGKTYISKKLTRYLNFIGVPTREFNVG   76 (231)
T ss_dssp             EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf             99989---999998999999999973279873881507


No 43 
>>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* (A:27-244)
Probab=92.31  E-value=0.046  Score=34.86  Aligned_cols=38  Identities=16%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             98899823000788874899999999852473159876045
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      .-||.+|   .-|+|||-++..|++++..+|.++.++|-+-
T Consensus        10 ~viil~G---lpGsGKST~A~~L~~~~~~~~~~~~~~~~D~   47 (218)
T 2axn_A           10 TVIVMVG---LPARGKTYISKKLTRYLNWIGVPTKVFNVGE   47 (218)
T ss_dssp             EEEEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             EEEEEEC---CCCCCHHHHHHHHHHHHHCCCCCEEEECCHH
T ss_conf             4999989---9999889999999999722798816823448


No 44 
>>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167)
Probab=92.29  E-value=0.37  Score=28.41  Aligned_cols=35  Identities=9%  Similarity=0.046  Sum_probs=27.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      ++-+|-.   |+|||...+.++..+...|+++.++.-.
T Consensus        31 ~~i~G~m---gsGKTt~L~~~~~~~~~~~~kv~ii~p~   65 (167)
T 2j9r_A           31 EVICGSM---FSGKSEELIRRVRRTQFAKQHAIVFKPC   65 (167)
T ss_dssp             EEEECST---TSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECC---CCHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             9999050---7889999999999999879909998041


No 45 
>>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} (A:)
Probab=91.69  E-value=0.15  Score=31.25  Aligned_cols=43  Identities=26%  Similarity=0.175  Sum_probs=33.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHH--HHHHCCCCEEEEEECCCC
Q ss_conf             89889982300078887489999999--985247315987604578
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAK--AVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~--~l~~~g~~~~ilsRGYg~   86 (338)
                      +..||+|-|- =||+|||-++.-||-  .|.+.|+++.+++-=..+
T Consensus        16 ~~~vI~v~s~-KGGVGKTT~a~nLA~a~~La~~G~rVLlvd~Dpq~   60 (348)
T 3io3_A           16 DSLKWIFVGG-KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH   60 (348)
T ss_dssp             TTCSEEEEEC-STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred             CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             8846999969-99562999999999999998589908999579998


No 46 
>>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A (A:97-299)
Probab=91.55  E-value=0.16  Score=30.93  Aligned_cols=32  Identities=22%  Similarity=0.123  Sum_probs=28.2

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             23000788874899999999852473159876
Q gi|254780401|r   50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |=.=.||+|||-++..|++.|...|.++++++
T Consensus        13 ~i~G~~G~GKTTla~kl~~~l~~~g~~~~~i~   44 (203)
T 1zu4_A           13 MLVGVNGTGKTTSLAKMANYYAELGYKVLIAA   44 (203)
T ss_dssp             EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             95053013530378899999998099622675


No 47 
>>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A (A:)
Probab=91.52  E-value=0.24  Score=29.81  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=34.1

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             433889889982300078887489999999985247315987604
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +...+..||.|-|. -||+|||-++.-||..|.++|..+.+.---
T Consensus        22 ~~~~~~~vIav~s~-KGGvGKTTia~~LA~~la~~g~~~lvd~D~   65 (267)
T 3k9g_A           22 MDNKKPKIITIASI-KGGVGKSTSAIILATLLSKNNKVLLIDMDT   65 (267)
T ss_dssp             ----CCEEEEECCS-SSSSCHHHHHHHHHHHHTTTSCEEEEEECT
T ss_pred             CCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             67889979999789-998669999999999998699889993676


No 48 
>>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} (A:1-155)
Probab=90.88  E-value=0.58  Score=27.04  Aligned_cols=26  Identities=15%  Similarity=0.042  Sum_probs=24.8

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88874899999999852473159876
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |+|||-+...++..+...|.++..++
T Consensus        22 GsGKTtl~lq~a~~~~~~g~~v~~~~   47 (155)
T 2b8t_A           22 FAGKTAELIRRLHRLEYADVKYLVFK   47 (155)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             77889999999999998799499998


No 49 
>>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:)
Probab=90.68  E-value=0.2  Score=30.24  Aligned_cols=42  Identities=19%  Similarity=0.213  Sum_probs=34.5

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             3388988998230007888748999999998524731598760
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      ...+-.||.|-+. -||.|||-++..||..|.++|++|.++-=
T Consensus        78 ~~~~~~vi~v~s~-kgG~GKTtia~nLA~~la~~g~~VlliD~  119 (271)
T 3bfv_A           78 PDSAVQSIVITSE-APGAGKSTIAANLAVAYAQAGYKTLIVDG  119 (271)
T ss_dssp             TTCCCCEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             7999859999789-98998899999999999967994899855


No 50 
>>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175)
Probab=90.40  E-value=0.67  Score=26.60  Aligned_cols=36  Identities=11%  Similarity=0.104  Sum_probs=27.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +-.++..|--   |||||-++.++|+.+...+..+..+.
T Consensus        52 ~~~ill~Gpp---GtGKT~la~aia~~l~~~~~~~~~~~   87 (175)
T 3bos_A           52 VQAIYLWGPV---KSGRTHLIHAACARANELERRSFYIP   87 (175)
T ss_dssp             CSEEEEECST---TSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCC---CCCHHHHHHHHHHHHHHCCHHEEHHH
T ss_conf             8749998998---66688999999998532120001027


No 51 
>>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:114-308)
Probab=89.68  E-value=0.76  Score=26.20  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCEEEECCCCCHHHHCCHHHHHHHCCC
Q ss_conf             88998230007888748999999998524731598760457877-7755871456788770421233220576
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS-RISFRVDLEKHSAYDVGDEPLLLARRAV  116 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~-~~~~~v~~~~~~~~~vGDEp~lla~~~p  116 (338)
                      |||+|    .|--|||-++.+++..|++.|+++.... +++... ...........-..|+|+-..+.....|
T Consensus         2 ~vi~V----tGT~GKTtt~~ll~~iL~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~v~e~~~~~~~~~~~~p   69 (195)
T 1j6u_A            2 EEFAV----TGTDGKTTTTAXVAHVLKHLRKSPTVFL-GGIXDSLEHGNYEKGNGPVVYELDESEEFFSEFSP   69 (195)
T ss_dssp             CEEEE----ECSSSHHHHHHHHHHHHHHTTCCCEEEC-SSCCTTSTTSSEECCSSCEEEEECTTSGGGGGCCC
T ss_pred             CEEEE----ECCCCCHHHHHHHHHHHCCCCCCCEEEC-CCCCCCCHHHHHCCCCCEEEEEECCCCCCCEEECC
T ss_conf             57999----7888715399999998603587541214-77566420234316996089982045453202268


No 52 
>>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} (A:106-326)
Probab=89.64  E-value=0.51  Score=27.40  Aligned_cols=43  Identities=35%  Similarity=0.346  Sum_probs=34.7

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             89889982300078887489999999985247315987604578777
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR   89 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~   89 (338)
                      +.|||+|    +|=-|||-++.+|+..|++.|++++..+-|......
T Consensus         2 ~~~vI~V----tGT~GKttt~~ll~~iL~~~G~~~~~~~s~~~~~~~   44 (221)
T 3eag_A            2 HHWVLGV----AGTHGKTTTASXLAWVLEYAGLAPGFLIGGVPENFG   44 (221)
T ss_dssp             GSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSS
T ss_pred             CCCCEEE----EEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             5742256----542041368999999999709975323222235555


No 53 
>>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} (A:96-293)
Probab=89.34  E-value=0.3  Score=29.01  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=27.6

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             0078887489999999985247315987604
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      =-||+|||-++..|+..|...|.++.+..--
T Consensus        14 G~nG~GKTTl~~~La~~l~~~gg~v~i~~~D   44 (198)
T 1rj9_A           14 GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD   44 (198)
T ss_dssp             CSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             4667774118999999986511540034214


No 54 
>>2get_A Pantothenate kinase; homodimer, COA biosynthesis, nucleotide binding, transferase; HET: CME COK; 2.35A {Mycobacterium tuberculosis H37RV} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* (A:1-131,A:196-312)
Probab=88.81  E-value=0.37  Score=28.40  Aligned_cols=29  Identities=14%  Similarity=0.165  Sum_probs=25.7

Q ss_pred             EECCCCCCHHHHHHHHHHHH--CCCCEEEEE
Q ss_conf             00788874899999999852--473159876
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVID--KNLKPGFLS   81 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~--~g~~~~ils   81 (338)
                      =+-|.|||-++.-||.+|+.  +|++|++++
T Consensus        97 GptGVGKTTTiaKLA~~l~~~~~g~kV~Lit  127 (248)
T 2get_A           97 GSVAVGKSTTARVLQALLARWDHHPRVDLVT  127 (248)
T ss_dssp             ECTTSSHHHHHHHHHHHHHCSTTCCCEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             7988873899999999985207999659996


No 55 
>>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} (A:1-304)
Probab=88.20  E-value=2.1  Score=23.13  Aligned_cols=119  Identities=18%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             HHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHH------CCHH
Q ss_conf             4046433889889982300078887489999999985247315987604578777755871456788770------4212
Q gi|254780401|r   35 KRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDV------GDEP  108 (338)
Q Consensus        35 ~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~v------GDEp  108 (338)
                      .+......+.|||+|    +|=-|||.++-+|+..|++.|++++...-|.-........+.....+....      -++.
T Consensus        43 ~~l~~~~~~~~vI~V----tGTnGKTTTt~ll~~iL~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  118 (304)
T 1o5z_A           43 SKLGNPHLEYKTIHI----GGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPI  118 (304)
T ss_dssp             HHTTCGGGSSEEEEE----ECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHH
T ss_conf             981990760988999----7982479999999999998799879978886074202899999934778889988877776


Q ss_pred             HHHHH-CC--CCCCCCCHHHHH-HHHCCCCCCEEEECCCCC---C--CCCCCEEEEEE
Q ss_conf             33220-57--634652012256-641024574799718322---3--44123069999
Q gi|254780401|r  109 LLLAR-RA--VTIVTSDRKIGV-QMLLQEGVDIIIMDDGFH---S--ADLQADFSLIV  157 (338)
Q Consensus       109 ~lla~-~~--pv~V~~~R~~~~-~~~~~~~~diiIlDDGfQ---h--~~l~rdl~Ivl  157 (338)
                      ..... ..  +.....--...+ ......+.|+.+++-+-.   +  ..+++|.-+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~E~~~~~~~~~~~~~~p~v~vit  176 (304)
T 1o5z_A          119 LNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFPLCSTIV  176 (304)
T ss_dssp             HHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGGCCCSCEEEC
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEEC
T ss_conf             6654115778898999999999999765148788654245421024440333342012


No 56 
>>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* (C:115-314)
Probab=88.10  E-value=0.46  Score=27.76  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=26.7

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             07888748999999998524731598760
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      -.|+|||-+...|+++++..|.++++++-
T Consensus        23 p~GaGKTTli~~L~~~l~~~~g~v~i~~~   51 (200)
T 3e70_C           23 FNGSGKTTTIAKLANWLKNHGFSVVIAAS   51 (200)
T ss_dssp             CTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf             87787543089999999966986236523


No 57 
>>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} (A:120-374)
Probab=87.06  E-value=0.71  Score=26.40  Aligned_cols=39  Identities=33%  Similarity=0.402  Sum_probs=33.4

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             8988998230007888748999999998524731598760457
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      ++|||+|    +|=-|||-++.+|+..|++.|++++..+-+.-
T Consensus         2 ~~~vI~V----tGT~GKtst~~~i~~iL~~~G~~~~~~~s~~~   40 (255)
T 3hn7_A            2 SRHVIAV----AGTHGKTTTTTXLAWILHYAGIDAGFLIGGVP   40 (255)
T ss_dssp             GSEEEEE----ECSSCHHHHHHHHHHHHHHTTCCCEEECSCCB
T ss_pred             CCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             7848999----55888555999999999974998639975702


No 58 
>>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} (A:93-277)
Probab=87.04  E-value=0.54  Score=27.25  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+.+|-   -|+|||-++--++.++..+|.+++|++.-
T Consensus         9 v~i~G~---~GsGKTT~i~kl~~~~~~~~~~v~ii~~d   43 (185)
T 1ls1_A            9 WFLVGL---QGSGKTTTAAKLALYYKGKGRRPLLVAAD   43 (185)
T ss_dssp             EEEECC---TTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEECC---CCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             999678---88871227999999998669867888424


No 59 
>>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:1-262)
Probab=86.25  E-value=0.47  Score=27.69  Aligned_cols=31  Identities=29%  Similarity=0.426  Sum_probs=19.2

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             8988998230007888748999999998524731
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      +..++-.|.-   |||||=++.++++.+...+..
T Consensus       130 ~~~~ll~Gpp---GtGKT~La~aia~~~~~~~~~  160 (262)
T 2z4s_A          130 YNPLFIYGGV---GLGKTHLLQSIGNYVVQNEPD  160 (262)
T ss_dssp             SCCEEEECSS---SSSHHHHHHHHHHHHHHHCCS
T ss_pred             CCCEEEECCC---CCCHHHHHHHHHHHHHHCCCC
T ss_conf             7856997687---756159999999999851984


No 60 
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:361-593,A:665-705)
Probab=86.14  E-value=0.58  Score=27.05  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=25.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++.++......|.+++.++
T Consensus        32 pGsGKTtL~Lql~~~~~~~g~~vlyId   58 (274)
T 3cmw_A           32 ESSGKTTLTLQVIAAAQREGKTCAFID   58 (274)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             877810247998888886588489942


No 61 
>>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide- binding, transferase; HET: MSE; 2.01A {Staphylococcus aureus} (A:1-167)
Probab=86.11  E-value=1.8  Score=23.48  Aligned_cols=72  Identities=13%  Similarity=0.091  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC--CCCCCCCHHHHHHHHCC
Q ss_conf             7888748999999998524731598760457877775587145678877042123322057--63465201225664102
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA--VTIVTSDRKIGVQMLLQ  132 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~--pv~V~~~R~~~~~~~~~  132 (338)
                      =|+|||-..+-.++.+...|.++.++.-+.--+......+                 .+..  -....-+....+.....
T Consensus        37 m~sGKTt~Ll~~~~~~~~~g~kvivikp~~D~R~~~~~i~-----------------s~~g~~~~~~~i~~~~~i~~~~~   99 (167)
T 3e2i_A           37 XFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVV-----------------SHNGNAIEAINISKASEIXTHDL   99 (167)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------------------CBTTBCCEEEEESSGGGGGGSCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEE-----------------CCCCCCCEEEECCCHHHHHHHHC
T ss_conf             0773899999999999988996999925455507999777-----------------36898106576187789998643


Q ss_pred             CCCCEEEECCC
Q ss_conf             45747997183
Q gi|254780401|r  133 EGVDIIIMDDG  143 (338)
Q Consensus       133 ~~~diiIlDDG  143 (338)
                      ..+|+|+.|++
T Consensus       100 ~~~dvI~IDEa  110 (167)
T 3e2i_A          100 TNVDVIGIDEV  110 (167)
T ss_dssp             TTCSEEEECCG
T ss_pred             CCCCEEEEECH
T ss_conf             47999999814


No 62 
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1056-1292,A:1363-1404)
Probab=85.84  E-value=0.61  Score=26.88  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||-+++.++...+..|.+++.++
T Consensus        36 pgsGKTtlal~~~~~~~~~g~~vlyID   62 (279)
T 3cmw_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (279)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             877804599999999986288479941


No 63 
>>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} (A:)
Probab=85.28  E-value=0.62  Score=26.81  Aligned_cols=32  Identities=13%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             78887489999999985247315987604578
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      -|+|||-++..|++.|...|..+..++++...
T Consensus        10 ~GsGKTT~a~~L~~~l~~~~~~~~~~~~~~~~   41 (194)
T 1nks_A           10 PGVGKSTVLAKVKEILDNQGINNKIINYGDFM   41 (194)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf             99698999999999998769987999789831


No 64 
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1-244,A:316-360)
Probab=84.90  E-value=0.76  Score=26.21  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++-++...+..|.+++.++
T Consensus        43 pGsGKTtL~Lq~~~~~~~~g~~viyid   69 (289)
T 3cmw_A           43 ESSGKTTLTLQVIAAAQREGKTCAFID   69 (289)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCCCCEEEHHHHHHHHHCCCEEEEEC
T ss_conf             667871560367777764488037732


No 65 
>>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} (A:128-368)
Probab=84.80  E-value=2.7  Score=22.26  Aligned_cols=43  Identities=19%  Similarity=0.235  Sum_probs=35.0

Q ss_pred             CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             46433889889982300078887489999999985247315987604
Q gi|254780401|r   37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        37 ~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      ......+.|||+|    +|=.|||-++.+|+..|+..|++++..+-+
T Consensus        12 l~~~~~~~~vI~V----tGT~GKTTt~~li~~iL~~~g~~~~~~~s~   54 (241)
T 2wtz_A           12 YGHPSERLTVIGI----TGTSGKTTTTYLVEAGLRAAGRVAGLIGTI   54 (241)
T ss_dssp             TTCGGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEESSS
T ss_pred             HCCCCCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf             6683127858999----799988999999999986245543002554


No 66 
>>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* (A:82-305)
Probab=84.77  E-value=0.71  Score=26.38  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=30.4

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             889889982300078887489999999985247315987604578
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      ...|||+|    .|--|||.++.+|...|++.|++++.. .+++.
T Consensus        17 ~~~~vi~V----tGT~GKTTt~~li~~iL~~~g~~~~~~-~~~~~   56 (224)
T 2am1_A           17 TTVDVFAV----TGSNGKTTTKDXLAHLLSTRYKTYKTQ-GNYNN   56 (224)
T ss_dssp             HCCEEEEE----ECCCSSSCHHHHHHHHHTTTSCEEECC-TTCCS
T ss_pred             CCCCEEEE----CCCCHHHHHHHHHHHHHHHCCCCEEEC-CCCCC
T ss_conf             56506996----242011477799999988616735405-86035


No 67 
>>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} (A:)
Probab=83.91  E-value=0.41  Score=28.10  Aligned_cols=40  Identities=10%  Similarity=0.143  Sum_probs=32.6

Q ss_pred             EEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             8998-230007888748999999998524731598760457877
Q gi|254780401|r   46 VICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS   88 (338)
Q Consensus        46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~   88 (338)
                      +|+| |+.   |+|||-++..|++.|...++.++.+.|.+....
T Consensus         4 iI~i~G~~---GsGKsT~a~~L~~~l~~~~~~~~~~~~~~~~~~   44 (241)
T 2ocp_A            4 RLSIEGNI---AVGKSTFVKLLTKTYPEWHVATEPVATWQNIQA   44 (241)
T ss_dssp             EEEEEECT---TSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC-
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEC
T ss_conf             89998999---886999999999987304874134575321455


No 68 
>>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} (A:)
Probab=83.63  E-value=3.4  Score=21.58  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=24.8

Q ss_pred             ECCEEE---CCCCCCHHHHHHHHHHHH-CCCCEEEEEEC
Q ss_conf             823000---788874899999999852-47315987604
Q gi|254780401|r   49 VGGFVM---GGTGKTPTALAIAKAVID-KNLKPGFLSRG   83 (338)
Q Consensus        49 VGNitv---GGtGKTP~v~~l~~~l~~-~g~~~~ilsRG   83 (338)
                      -||+.+   .|+|||-+.-+|++++.. .+.++.++..-
T Consensus        25 ~g~ili~GptGsGKTTll~al~~~~~~~~~~~v~~iEd~   63 (261)
T 2eyu_A           25 XGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDP   63 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf             987999899999799999999997456436442203433


No 69 
>>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} (A:)
Probab=83.55  E-value=1.9  Score=23.32  Aligned_cols=41  Identities=12%  Similarity=0.140  Sum_probs=33.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             98899823000788874899999999852473159876045787
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      .-|+..|.   -|+|||-++..|++.|...++.+.+++|.....
T Consensus        10 ~~I~i~G~---~GsGKST~a~~La~~l~~~~~~~~~~~~~~~~~   50 (215)
T 1nn5_A           10 ALIVLEGV---DRAGKSTQSRKLVEALCAAGHRAELLRFPERST   50 (215)
T ss_dssp             CEEEEEES---TTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTS
T ss_pred             EEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             49999899---888899999999999986799669996489986


No 70 
>>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} (A:150-424,A:686-712)
Probab=83.34  E-value=0.77  Score=26.17  Aligned_cols=27  Identities=22%  Similarity=0.090  Sum_probs=20.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf             78887489999999985247--3159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKN--LKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g--~~~~ils   81 (338)
                      =|+|||=+++.++..+...|  .++.||.
T Consensus        30 ~G~GKT~~ai~~~~~l~~~~~~~~vLIv~   58 (302)
T 3dmq_A           30 VGLGKTIEAGXILHQQLLSGAAERVLIIV   58 (302)
T ss_dssp             TTSCHHHHHHHHHHHHHHTSSCCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             96359999999999999838999689998


No 71 
>>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} (A:1-111,A:240-423)
Probab=82.94  E-value=1.9  Score=23.38  Aligned_cols=196  Identities=17%  Similarity=0.235  Sum_probs=103.2

Q ss_pred             CCCCCEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEECC--------CCCC--CCCEEEECCCCCHHHHCCHH
Q ss_conf             38898899823000--788874899999999852473159876045--------7877--77558714567887704212
Q gi|254780401|r   41 HAPIPVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRGY--------GRKS--RISFRVDLEKHSAYDVGDEP  108 (338)
Q Consensus        41 ~~~~pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY--------g~~~--~~~~~v~~~~~~~~~vGDEp  108 (338)
                      ..+..+|.|-.++-  ||-|||-+++-|+..|.+.|+++.+--|.=        .+..  .|...+.+..    +.-=-|
T Consensus        40 ~~~~k~IlVTSi~PtkgGEGKSTvsiNLA~aLA~~GkkVllDLR~PSl~~~fGikg~a~~~Gls~vLp~e----diA~~P  115 (295)
T 3do6_A           40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSXSLNRIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSD----EIAINP  115 (295)
T ss_dssp             SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCHHHHHHSCCSTTEETTEEEESHH----HHTTSC
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECH----HHHHHH
T ss_conf             8995699997368888889851119989999875376336897257778720555666777721566205----637676


Q ss_pred             HHHHH--CCC----------CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf             33220--576----------346520122566410245747997183223441230699996184335665537613652
Q gi|254780401|r  109 LLLAR--RAV----------TIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLR  176 (338)
Q Consensus       109 ~lla~--~~p----------v~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLR  176 (338)
                      -|...  ..|          +.-+.+-..|-+.+.+. .|++|-.-|                    ||-+         
T Consensus       116 nlvqt~e~tp~~vHgGPFaNIAhG~nSviat~~al~l-~dyvvtEaG--------------------fgaD---------  165 (295)
T 3do6_A          116 NLVQTTEGTPALIHCGPFANIAHGTNSIIATKXAXKL-SEYTVTEAG--------------------FGAD---------  165 (295)
T ss_dssp             EEEEETTSCEEEECCCCCSSSSCCBCCHHHHHHHHHH-CSEEEEEBS--------------------SSTT---------
T ss_pred             HHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEEC--------------------CCCC---------
T ss_conf             7660025885455167531212575389999998851-676996301--------------------3677---------


Q ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH---HH---CCCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCCCC
Q ss_conf             100255665145442044124577631350111222---20---13211168638987-415535789998874010000
Q gi|254780401|r  177 VPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKL---KP---RLTFDLSGKKVLAF-SGIADTEKFFTTVRQLGALIE  249 (338)
Q Consensus       177 Ep~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~---~~---~~~~~l~~k~v~af-sGIa~P~~F~~~L~~~g~~i~  249 (338)
                        +- +-|-.|+..-.    ....  +..-+..+..   +.   ....++...++-++ .|..|=++-.+.++++|..++
T Consensus       166 --lG-aeKf~dikcr~----~g~~--p~~~vlvat~ralk~hgg~~~~~~~~~n~~a~~~G~~nl~~hi~n~~~~g~~~v  236 (295)
T 3do6_A          166 --LG-AEKFIDFVSRV----GGFY--PNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLPVV  236 (295)
T ss_dssp             --TH-HHHHHHTHHHH----HTCC--CSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             --CC-CHHHCCCCCCC----CCCC--CCEEEEEEEECHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             --67-45334765257----8898--753899986001004799984774740899998676679999875665089826


Q ss_pred             CCC-CCCCCCCCCHHHHHHHHHHHHHCCCE-EEEC
Q ss_conf             122-14332348989999999975647987-9985
Q gi|254780401|r  250 QCY-SFGDHAHLSDKKIAYLLDQAQQKGLI-LVTT  282 (338)
Q Consensus       250 ~~~-~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTT  282 (338)
                      -.+ .|++-   |+.+++.+.+.+++.+.. .+++
T Consensus       237 vaiN~f~~D---t~~Ei~~~~~~~~~~g~~~~~~~  268 (295)
T 3do6_A          237 VALNRFSTD---TEKEIAYVVKECEKLGVRVAVSE  268 (295)
T ss_dssp             EEEECCTTC---CHHHHHHHHHHHHTTTCEEEEEC
T ss_pred             ECCCCCCCC---CHHHHHHHHHHHHHCCCCCEECC
T ss_conf             646888876---27789999999876387512225


No 72 
>>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} (A:93-292)
Probab=82.91  E-value=1  Score=25.31  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+.+|   .+|+|||-.+-.++-.+..+|.+++|+.-.
T Consensus        11 iii~G---~tG~GKTT~ipq~~~~~~~~g~~~~i~~~d   45 (200)
T 3b9q_A           11 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGD   45 (200)
T ss_dssp             EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             EEECC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             99616---655541157999999998558874157512


No 73 
>>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} (A:150-349)
Probab=82.91  E-value=1  Score=25.31  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+.+|   .+|+|||-.+-.++-.+..+|.+++|+.-.
T Consensus        11 iii~G---~tG~GKTT~ipq~~~~~~~~g~~~~i~~~d   45 (200)
T 2og2_A           11 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGD   45 (200)
T ss_dssp             EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             EEEEC---CCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99705---531366778999999998610465057740


No 74 
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1-244,A:315-356)
Probab=82.85  E-value=0.86  Score=25.81  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++-++......|.+++.++
T Consensus        43 pGsGKTtl~lq~~~~~~~~g~~viyid   69 (286)
T 3cmu_A           43 ESSGKTTLTLQVIAAAQREGKTCAFID   69 (286)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCCCEEEEHHHHHHHHCCCCEEEEC
T ss_conf             767850476134567763587025632


No 75 
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1055-1291,A:1361-1404)
Probab=82.72  E-value=2.5  Score=22.47  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++.++...+..|.+++.++
T Consensus        36 pGsGKTtLaL~~~~~~~~~g~~vlyID   62 (281)
T 3cmu_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (281)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCCEEEEEEECCHHHHCCCCHHHCC
T ss_conf             778847886410373332355101000


No 76 
>>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} (A:144-361)
Probab=82.38  E-value=3.8  Score=21.26  Aligned_cols=29  Identities=17%  Similarity=0.074  Sum_probs=22.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      .|+|||.+..+|+..+... .++.++-...
T Consensus        41 tgSGKTT~l~aL~~~~~~~-~~iv~iEd~~   69 (218)
T 2gza_A           41 TGSGKTTLMKALMQEIPFD-QRLITIEDVP   69 (218)
T ss_dssp             SSSCHHHHHHHHHTTSCTT-SCEEEEESSS
T ss_pred             CCCCHHHHHHHHHHHHHHC-CCEEEEECCH
T ss_conf             9886689999999764213-5505750544


No 77 
>>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Dugesia japonica} (A:)
Probab=82.35  E-value=1.6  Score=23.99  Aligned_cols=103  Identities=13%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             CCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH
Q ss_conf             788874-89999999985247315987604578777755871456788770421233220576----3465201225664
Q gi|254780401|r   55 GGTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM  129 (338)
Q Consensus        55 GGtGKT-P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~  129 (338)
                      =||||| -+++-+.+.+.........   .+....-..+++.+...-+.++.+|-..+....+    .+.+.........
T Consensus        69 TGSGKTlayllPil~~l~~~~~~~~~---~~~~~~~~alvl~PTrELa~Qi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  145 (253)
T 1wrb_A           69 TGSGKTAAFLIPIINHLVCQDLNQQR---YSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR  145 (253)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCC---------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH
T ss_pred             CCCCCCEEEHHHHHHHHHHCCCCCCC---CCCCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHH
T ss_conf             87554055388899998722222223---466788469995461553010122110002578846999834510046766


Q ss_pred             HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC
Q ss_conf             10245747997183-----2-2344123069999618
Q gi|254780401|r  130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS  160 (338)
Q Consensus       130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~  160 (338)
                      ....+++++|..-|     . .+.---+++..+++|-
T Consensus       146 ~~~~~~~ilv~Tpgrl~~~~~~~~~~l~~ik~lVlDE  182 (253)
T 1wrb_A          146 EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE  182 (253)
T ss_dssp             HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred             HHCCCCCEEEECHHHHHHHHCCCCEECCCCCEEEEEE
T ss_conf             4026874477267998776616816635540588873


No 78 
>>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} (A:71-285)
Probab=82.21  E-value=1.2  Score=24.71  Aligned_cols=27  Identities=30%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++.++-...++|.++..+|
T Consensus        13 pGsGKT~l~lq~~~~~~~~G~~vlyis   39 (215)
T 1xp8_A           13 ESGGKTTLALAIVAQAQKAGGTCAFID   39 (215)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             774068999999999960798089980


No 79 
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:706-942,A:1014-1055)
Probab=81.33  E-value=1.2  Score=24.76  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++-++......|.+++.++
T Consensus        36 pGsGKT~lal~~~~~~~~~g~~viyID   62 (279)
T 3cmw_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (279)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCCCEEEEHHHHHHHHHCCCEEEEEC
T ss_conf             877726775887687773166345540


No 80 
>>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (D:111-360,D:596-608)
Probab=81.28  E-value=1.3  Score=24.61  Aligned_cols=28  Identities=29%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCC----CEEEEE
Q ss_conf             0788874899999999852473----159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNL----KPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~----~~~ils   81 (338)
                      ..|||||-+...++.+|...+.    ++.+++
T Consensus        62 ppGTGKT~~l~~~i~~l~~~~~~~~~~Il~~a   93 (263)
T 1w36_D           62 GPGTGKTTTVAKLLAALIQMADGERCRIRLAA   93 (263)
T ss_dssp             CTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             99986403299999999997504897599973


No 81 
>>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} (A:)
Probab=81.25  E-value=1.4  Score=24.33  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=29.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +-.++-.|.   -|||||-+..++++.+...++++..++
T Consensus        54 ~~~l~l~G~---~G~GKThLa~ai~~~~~~~~~~~~~~~   89 (202)
T 2w58_A           54 MKGLYLHGS---FGVGKTYLLAAIANELAKRNVSSLIVY   89 (202)
T ss_dssp             CCEEEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             874899899---989789999999999754257358993


No 82 
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:706-942,A:1014-1054)
Probab=81.21  E-value=1.1  Score=25.13  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++-++...+..|.+++.++
T Consensus        36 pGsGKTtl~l~~~~~~~~~g~~viyid   62 (278)
T 3cmu_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (278)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             877703668987655553155012004


No 83 
>>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} (A:)
Probab=81.11  E-value=1  Score=25.26  Aligned_cols=32  Identities=16%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             07888748999999998524731598760457
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      ..|+|||-++..|++.|...++....++++..
T Consensus        11 ~~GsGKtTla~~L~~~l~~~~~~~~~~~~~~~   42 (192)
T 1kht_A           11 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV   42 (192)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf             99969899999999999875997699867866


No 84 
>>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} (A:)
Probab=80.98  E-value=2.6  Score=22.37  Aligned_cols=40  Identities=18%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8899823000788874899999999852473159876045787
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      -|...|+.   |+|||-++..|++.|...++.+....+-..+.
T Consensus         5 ~I~i~G~~---GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~   44 (213)
T 4tmk_A            5 YIVIEGLE---GAGKTTARNVVVETLEQLGIRDMVFTREPGGT   44 (213)
T ss_dssp             EEEEEECT---TSCHHHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             89998998---88699999999999986799849983198996


No 85 
>>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} (A:104-300)
Probab=80.97  E-value=2.9  Score=22.08  Aligned_cols=35  Identities=14%  Similarity=0.369  Sum_probs=29.2

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             988998230007888748999999998524731598760
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +|||.|    .|=-|||-++.+|+..|++.|++++..+-
T Consensus         2 ~~vi~V----tGt~GKTtt~~ll~~iL~~~g~~~~~~~~   36 (197)
T 2jfg_A            2 APIVAI----TGSNGKSTVTTLVGEMAKAAGVNVGVGGN   36 (197)
T ss_dssp             SCEEEE----ECSSSHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred             CEEEEE----ECCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             505875----21225337788888764320333322332


No 86 
>>2i5e_A Hypothetical protein MM_2497; APC86122, hypothetic protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei GO1} (A:1-170)
Probab=80.84  E-value=4.3  Score=20.88  Aligned_cols=38  Identities=3%  Similarity=-0.182  Sum_probs=31.3

Q ss_pred             EEECCCCCC----------------HHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             000788874----------------89999999985247315987604578777
Q gi|254780401|r   52 FVMGGTGKT----------------PTALAIAKAVIDKNLKPGFLSRGYGRKSR   89 (338)
Q Consensus        52 itvGGtGKT----------------P~v~~l~~~l~~~g~~~~ilsRGYg~~~~   89 (338)
                      |-+||.|||                |+..|..+.|++.|..-.++..+|.....
T Consensus         9 IlAaG~G~tRl~~~~pK~l~~i~gkpli~~~l~~l~~~g~~~iviv~~~~~~~~   62 (170)
T 2i5e_A            9 PYKKAGAKSRLSPVLSLQEREEFVELXLNQVISSLKGAGIEQVDILSPSVYGLE   62 (170)
T ss_dssp             ECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTCS
T ss_pred             ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf             769998867878648999999999999999999986279809999828756777


No 87 
>>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} (A:)
Probab=80.70  E-value=1.9  Score=23.37  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |..-||+   |+|||-++..|++.|..+|+.++.+..+
T Consensus        15 I~ieG~~---GsGKSTl~~~La~~L~~~~~~v~~~~ep   49 (341)
T 1osn_A           15 IYLDGAY---GIGKTTAAEEFLHHFAITPNRILLIGEP   49 (341)
T ss_dssp             EEEEESS---SSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9998986---7789999999999872369856997086


No 88 
>>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} (A:1-297)
Probab=80.64  E-value=4.3  Score=20.83  Aligned_cols=115  Identities=17%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHH---------
Q ss_conf             64338898899823000788874899999999852473159876045787777558714567887704212---------
Q gi|254780401|r   38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEP---------  108 (338)
Q Consensus        38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp---------  108 (338)
                      .....+.|||+|    +|=-|||.++.+|+..|+..|++++....+.-..............+ ...+++.         
T Consensus        33 ~~~~~~~~vI~V----tGT~GKTTtt~ll~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  107 (297)
T 1jbw_A           33 GNPQQQGRYIHV----TGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIP-DAALVNAVAFVRAALE  107 (297)
T ss_dssp             TCGGGSSCEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECC-HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEECC-HHHHHHHHHHHHHHHH
T ss_conf             992870998999----79822799999999999978998899788772720348999999658-8999988878899999


Q ss_pred             HHHHHC--CCCCCCCCHHHHH-HHHCCCCCCEEEECCCCCC---C--CCCCEEEEEE
Q ss_conf             332205--7634652012256-6410245747997183223---4--4123069999
Q gi|254780401|r  109 LLLARR--AVTIVTSDRKIGV-QMLLQEGVDIIIMDDGFHS---A--DLQADFSLIV  157 (338)
Q Consensus       109 ~lla~~--~pv~V~~~R~~~~-~~~~~~~~diiIlDDGfQh---~--~l~rdl~Ivl  157 (338)
                      .+....  .|+.+...-.... ......+.++.+++-+...   .  .+..|+-++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~p~v~iit  164 (297)
T 1jbw_A          108 RLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLT  164 (297)
T ss_dssp             HHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSCCCSEEEEC
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCEEEECCEEEEC
T ss_conf             998724788888999999999999987268689996233554146267530123432


No 89 
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:357-593,A:665-705)
Probab=80.54  E-value=1.2  Score=24.70  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++.++......|.+++.++
T Consensus        36 pGsGKTtl~l~~~~~~~~~g~~vlyId   62 (278)
T 3cmu_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (278)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCCEEEEHHHHHHHHHCCCEEEEEE
T ss_conf             778842420578887874487468973


No 90 
>>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (A:1-208)
Probab=80.30  E-value=2.8  Score=22.14  Aligned_cols=34  Identities=21%  Similarity=0.091  Sum_probs=23.3

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .+-.++-.|.   -|||||-++..+|+.+.   +.+..++
T Consensus        76 ~~~~~Ll~GP---pGtGKT~~A~~lA~~~~---~~~~~~~  109 (208)
T 1sxj_A           76 VFRAAMLYGP---PGIGKTTAAHLVAQELG---YDILEQN  109 (208)
T ss_dssp             SCSEEEEECS---TTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred             CCCEEEEECC---CCHHHHHHHHHHHHHHC---CCEEEEE
T ss_conf             8777999899---97159999999999859---9889995


No 91 
>>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens} (A:)
Probab=80.03  E-value=2.5  Score=22.48  Aligned_cols=99  Identities=19%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             EECCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHH
Q ss_conf             00788874-89999999985247315987604578777755871456788770421233220576----34652012256
Q gi|254780401|r   53 VMGGTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGV  127 (338)
Q Consensus        53 tvGGtGKT-P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~  127 (338)
                      .-=||||| -+++-+...+....       +..+........+.+...-+.++-+|...+.....    .+++.......
T Consensus        73 A~TGSGKT~af~lPil~~l~~~~-------~~~~~~~~~~iil~PTRELa~Qi~~~~~~~~~~~~~~~~~~~~g~~~~~~  145 (242)
T 3fe2_A           73 AQTGSGKTLSYLLPAIVHINHQP-------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ  145 (242)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHTSC-------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHCCCC-------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf             57999864211451111100255-------31025786899965989999979999999733477589997089887999


Q ss_pred             HHHCCCCCCEEEECCCC-----C--CCCCCCEEEEEEEC
Q ss_conf             64102457479971832-----2--34412306999961
Q gi|254780401|r  128 QMLLQEGVDIIIMDDGF-----H--SADLQADFSLIVVN  159 (338)
Q Consensus       128 ~~~~~~~~diiIlDDGf-----Q--h~~l~rdl~Ivl~d  159 (338)
                      ....+.++|++|---|-     +  +..+ ..+..+++|
T Consensus       146 ~~~l~~~~~iiV~TPgrl~~~~~~~~~~l-~~l~~lVlD  183 (242)
T 3fe2_A          146 IRDLERGVEICIATPGRLIDFLECGKTNL-RRTTYLVLD  183 (242)
T ss_dssp             HHHHHHCCSEEEECHHHHHHHHHHTSCCC-TTCCEEEET
T ss_pred             HHHHHCCCCEEEECCCHHHHHHHCCCCCC-CCCEEEEEE
T ss_conf             99972799999989820687872383403-446399985


No 92 
>>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} (A:117-325)
Probab=79.57  E-value=1.9  Score=23.42  Aligned_cols=38  Identities=32%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             889982300078887489999999985247315987604578
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      |||.    .+|-.|||-++.+|+..|++.|++++....+..-
T Consensus         3 ~vI~----VtGTnGKttt~~~l~~iL~~~g~~~~~~~~~~~~   40 (209)
T 1p3d_A            3 HGIA----VAGTHGKTTTTAXISXIYTQAKLDPTFVNGGLVK   40 (209)
T ss_dssp             EEEE----EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred             EEEE----EECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             2678----8644688600499999999789987899898336


No 93 
>>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} (A:91-337)
Probab=78.64  E-value=5  Score=20.41  Aligned_cols=44  Identities=16%  Similarity=0.036  Sum_probs=35.4

Q ss_pred             HCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             046433889889982300078887489999999985247315987604
Q gi|254780401|r   36 RGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        36 ~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +........|||+|    +|=.|||-++.+++..|+..|+.++..+-.
T Consensus        10 ~~~~~~~~~~vI~V----tGT~GKTTtt~ll~~il~~~g~~~~~~~~~   53 (247)
T 1e8c_A           10 FYHEPSDNLRLVGV----TGTNGKTTTTQLLAQWSQLLGEISAVXGTV   53 (247)
T ss_dssp             HTTCGGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred             HHHCHHCCCCEEEE----ECCCCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             86372117848999----789997789999999999829964760666


No 94 
>>1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} (A:1-147)
Probab=77.40  E-value=5.4  Score=20.16  Aligned_cols=27  Identities=11%  Similarity=0.038  Sum_probs=24.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -++|||-..+-.++.+...|.++.++.
T Consensus        17 M~SGKTteLl~~~~~~~~~g~kvl~ik   43 (147)
T 1xx6_A           17 XYSGKSEELIRRIRRAKIAKQKIQVFK   43 (147)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             077899999999999998799299998


No 95 
>>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} (A:112-310)
Probab=77.03  E-value=3.6  Score=21.41  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .|||+|    +|=-|||-++.+|+..|++.|.+++...
T Consensus         1 ~~vi~V----tGT~GKTtt~~~l~~iL~~~g~~~~~~~   34 (199)
T 3lk7_A            1 SQLIGI----TGSNGKTTTTTXIAEVLNAGGQRGLLAG   34 (199)
T ss_dssp             SEEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEE----EEECCCCHHHHHHHHHHHHCCCCCEECC
T ss_conf             977999----8035863389999999986054530013


No 96 
>>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} (A:147-418)
Probab=76.83  E-value=4.4  Score=20.76  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=20.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             78887489999999985247315987
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      -|+|||-+...|++++......+.+.
T Consensus        30 tGsGKTtl~~al~~~~~~~~~~~~~~   55 (272)
T 1p9r_A           30 TGSGKSTTLYAGLQELNSSERNILTV   55 (272)
T ss_dssp             TTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             98864268998754614688459996


No 97 
>>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 (1:261-446)
Probab=76.64  E-value=3.3  Score=21.66  Aligned_cols=29  Identities=24%  Similarity=0.116  Sum_probs=21.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      -|+|||-+.-+|++.+... .+++++--.+
T Consensus         9 tGSGKTTll~aL~~~i~~~-~~~~~ied~~   37 (186)
T 2oap_1            9 TASGKTTTLNAIXXFIPPD-AKVVSIEDTR   37 (186)
T ss_dssp             TTSSHHHHHHHHGGGSCTT-CCEEEEESSC
T ss_pred             CCCCHHHHHHHHHHHCCCC-CCCCCCCCCC
T ss_conf             6555489999999746765-6622123662


No 98 
>>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} (A:1-125,A:255-437)
Probab=76.64  E-value=4.3  Score=20.85  Aligned_cols=187  Identities=18%  Similarity=0.224  Sum_probs=98.2

Q ss_pred             CCCCEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEEC--------CCCCC--CCCEEEECCCCCHHHHCCH--
Q ss_conf             8898899823000--78887489999999985247315987604--------57877--7755871456788770421--
Q gi|254780401|r   42 APIPVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRG--------YGRKS--RISFRVDLEKHSAYDVGDE--  107 (338)
Q Consensus        42 ~~~pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRG--------Yg~~~--~~~~~v~~~~~~~~~vGDE--  107 (338)
                      .+..+|.|-.++-  +|-|||-+++-|+..|.+.|+++.+--|.        -++..  .|...+.+        ||+  
T Consensus        55 ~~~kvIlVTSitPt~~GEGKTTtsiNLA~aLA~~GkkvlaDLR~PSL~~~fGikgga~g~GLsqvL~--------ge~~~  126 (308)
T 1eg7_A           55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVP--------MEDII  126 (308)
T ss_dssp             CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCSTHHHHTTCCCSEETTEEEEC--------HHHHT
T ss_pred             CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--------HHHHC
T ss_conf             9965999962589888887400198899999862984589972588788557545656676110130--------34401


Q ss_pred             -HHHHHH--CCC----------CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH
Q ss_conf             -233220--576----------3465201225664102457479971832234412306999961843356655376136
Q gi|254780401|r  108 -PLLLAR--RAV----------TIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGP  174 (338)
Q Consensus       108 -p~lla~--~~p----------v~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGp  174 (338)
                       |-|+..  ..|          +.-+.+-..|-+.+.+. .|++|-.-||                    |-+       
T Consensus       127 ~Pnlvqt~e~~p~~vh~gPFaNIAhG~nsv~a~~~al~l-~dyvvtEaGf--------------------g~d-------  178 (308)
T 1eg7_A          127 KPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKL-ADYVVTEAGF--------------------GAD-------  178 (308)
T ss_dssp             SCEEEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHH-CSEEEEEBSS--------------------CTT-------
T ss_pred             CCCCEEECCCCCEEEECCCHHHHHCCCHHHHHHHHHHHH-CCEEEEECCC--------------------CCC-------
T ss_conf             631032058973678337378765466299999999862-7858741234--------------------777-------


Q ss_pred             HHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH---HH---CCCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCC
Q ss_conf             52100255665145442044124577631350111222---20---13211168638987-4155357899988740100
Q gi|254780401|r  175 LRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKL---KP---RLTFDLSGKKVLAF-SGIADTEKFFTTVRQLGAL  247 (338)
Q Consensus       175 LREp~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~---~~---~~~~~l~~k~v~af-sGIa~P~~F~~~L~~~g~~  247 (338)
                          +- +-|-.|+..-    .....  +..-+..+..   +.   ....++...++-|+ .|.+|=++-.+.++.+|..
T Consensus       179 ----lG-~eKf~dikcr----~~g~~--p~~~v~vat~ralk~hgg~~~~~~~~~n~~a~~~G~~nl~~hi~n~~~~g~p  247 (308)
T 1eg7_A          179 ----LG-AEKFYDVKCR----YAGFK--PDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVP  247 (308)
T ss_dssp             ----TH-HHHHHHTHHH----HHTCC--CCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ----CC-CHHHCCCCCC----CCCCC--CCEEEEEEEHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ----57-3321473112----47989--9889999545778774899837637618999998888999999999974998


Q ss_pred             CCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             0012-214332348989999999975647987
Q gi|254780401|r  248 IEQC-YSFGDHAHLSDKKIAYLLDQAQQKGLI  278 (338)
Q Consensus       248 i~~~-~~fpDHh~ys~~dl~~i~~~a~~~~~~  278 (338)
                      ++-. -.|++-   ++.+++.+.+.+++.+..
T Consensus       248 ~vVaiN~f~~D---t~~Ei~~i~~~~~~~g~~  276 (308)
T 1eg7_A          248 AVVAINAFPTD---TEAELNLLYELCAKAGAE  276 (308)
T ss_dssp             EEEEEECCTTC---CHHHHHHHHHHTTTSEEE
T ss_pred             EEEEEECCCCC---CHHHHHHHHHHHHHCCCE
T ss_conf             59997079998---888999999999977998


No 99 
>>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} (A:93-290)
Probab=76.30  E-value=2.2  Score=22.88  Aligned_cols=30  Identities=20%  Similarity=0.219  Sum_probs=26.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             078887489999999985247315987604
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .-|+|||-+.-.|+..|+..|.++.+....
T Consensus        15 ~nGsGKSTl~~~Lag~l~~~gg~v~~~g~d   44 (198)
T 2qy9_A           15 VNGVGKTTTIGKLARQFEQQGKSVMLAAGD   44 (198)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             333465404889999987446750699731


No 100
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:582-783)
Probab=75.97  E-value=5.8  Score=19.90  Aligned_cols=97  Identities=20%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCC----CCCCHHHH
Q ss_conf             7888748999999998524731598760457877775587145678877042123322057----634----65201225
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTI----VTSDRKIG  126 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~----V~~~R~~~  126 (338)
                      =|+|||-+....+-...+.|.++.++.              +...-+.+.=++-.-+....    .++    -+..+...
T Consensus        52 TGsGKT~~~~~~i~~~~~~~~~vl~i~--------------P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (202)
T 2eyq_A           52 VGFGKTEVAMRAAFLAVDNHKQVAVLV--------------PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI  117 (202)
T ss_dssp             CCTTTHHHHHHHHHHHHTTTCEEEEEC--------------SSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEE--------------CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf             678714999999998740597389981--------------637779999999999751159789992486643149999


Q ss_pred             HHHHCCCCCCEEEE-CCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             66410245747997-1832234412306999961843356
Q gi|254780401|r  127 VQMLLQEGVDIIIM-DDGFHSADLQADFSLIVVNSHRGLG  165 (338)
Q Consensus       127 ~~~~~~~~~diiIl-DDGfQh~~l~rdl~Ivl~d~~~~~g  165 (338)
                      ........+++++. .+-+++.....+++.+++|-..-++
T Consensus       118 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~IiDE~H~~~  157 (202)
T 2eyq_A          118 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG  157 (202)
T ss_dssp             HHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSC
T ss_pred             HHHHCCCCEEEEECCHHHHHEEEECCCCCCEEECHHHHHH
T ss_conf             9763389802886302242100101556735603255556


No 101
>>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} (A:)
Probab=75.92  E-value=2  Score=23.18  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=22.3

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             388988998230007888748999999998524731598
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF   79 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i   79 (338)
                      ..+-+++-+|.-   |||||=++.++|+.+...++.+..
T Consensus       150 ~~~~gill~Gpp---GtGKT~La~aia~~~~~~~~~v~~  185 (308)
T 2qgz_A          150 AEQKGLYLYGDM---GIGKSYLLAAMAHELSEKKGVSTT  185 (308)
T ss_dssp             SSCCEEEEECST---TSSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCEEEEECCC---CCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             678808998989---998058999999999863431012


No 102
>>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} (A:)
Probab=75.84  E-value=2.1  Score=23.11  Aligned_cols=29  Identities=14%  Similarity=0.102  Sum_probs=25.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             78887489999999985247315987604
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      -|||||-++-.|+..+...+.++.+....
T Consensus        10 ~G~GKTTl~~~l~~~l~~~~~~v~~~~~~   38 (189)
T 2i3b_A           10 PGVGKTTLIHKASEVLKSSGVPVDGFYTE   38 (189)
T ss_dssp             CSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             99809999999999999779968799832


No 103
>>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} (A:)
Probab=75.32  E-value=6.1  Score=19.79  Aligned_cols=43  Identities=19%  Similarity=0.112  Sum_probs=32.0

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEC
Q ss_conf             000788874899999999852473159876045787777558714
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL   96 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~   96 (338)
                      +.+||||  -+=.+|++.|.++|+.+.++.|.-.........+..
T Consensus        16 LItGatG--fiG~~lv~~L~~~g~~v~~~~r~~~~~~~~~~~~~~   58 (321)
T 2pk3_A           16 LITGVAG--FVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISL   58 (321)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf             9967888--899999999997849899981887124689769994


No 104
>>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} (A:118-326)
Probab=75.28  E-value=2.9  Score=22.03  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=29.5

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             0078887489999999985247315987604578
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      ++|=.|||-++.+|+..|+..|++++..+-+..-
T Consensus         7 VtGT~GKtst~~~l~~iL~~~g~~~~~~~~~~~~   40 (209)
T 2f00_A            7 IAGTHGKTTTTAXVSSIYAEAGLDPTFVNGGLVK   40 (209)
T ss_dssp             EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             7503474318999999999769981899688667


No 105
>>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... (A:35-271)
Probab=75.10  E-value=2.7  Score=22.24  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=24.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||-++..++......|.++..++
T Consensus        36 pGsGKT~l~lq~~~~~~~~g~~v~yi~   62 (237)
T 2zr9_A           36 ESSGKTTVALHAVANAQAAGGIAAFID   62 (237)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             767789999999987525898799998


No 106
>>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A (A:)
Probab=74.80  E-value=5.5  Score=20.11  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=37.1

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCEEEECCC------CCCCCCCCEEEEEEECCCC
Q ss_conf             76346520122566410245747997183------2234412306999961843
Q gi|254780401|r  115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDG------FHSADLQADFSLIVVNSHR  162 (338)
Q Consensus       115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDG------fQh~~l~rdl~Ivl~d~~~  162 (338)
                      +.|.++.+-.+|...+.+..+|+|++|++      ++=....+++-++++.+..
T Consensus        43 ~~v~~a~~g~eAl~~~~~~~~dli~~d~~~p~~~~~~~~~~~~~~pvI~~t~~~   96 (137)
T 2pln_A           43 FXADVTESLEDGEYLXDIRNYDLVXVSDKNALSFVSRIKEKHSSIVVLVSSDNP   96 (137)
T ss_dssp             CEEEEESCHHHHHHHHHHSCCSEEEECSTTHHHHHHHHHHHSTTSEEEEEESSC
T ss_pred             CEEEEECCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             999998887999999874423298854122014677876630333211456778


No 107
>>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} (A:1-191,A:370-394)
Probab=74.68  E-value=1  Score=25.21  Aligned_cols=142  Identities=11%  Similarity=0.097  Sum_probs=73.7

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---EEEECCCCCHHHHCCHHHHHHHCCCC
Q ss_conf             388988998230007888748999999998524731598760457877775---58714567887704212332205763
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRIS---FRVDLEKHSAYDVGDEPLLLARRAVT  117 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~---~~v~~~~~~~~~vGDEp~lla~~~pv  117 (338)
                      +.+..|+.|.--..||.+  -.+..|++.|.++|+.|.|++.+++......   ..+..-...     ..+.+   ..+.
T Consensus        13 ~MKmkI~~v~~p~~GG~~--~~~~~la~~L~~~G~eV~vit~~~~~~~~~~~~~~~~~~i~~~-----~~~~~---~~~~   82 (216)
T 2jjm_A           13 HMKLKIGITCYPSVGGSG--VVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVN-----QYSVF---QYPP   82 (216)
T ss_dssp             --CCEEEEECCC--CHHH--HHHHHHHHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC---------C---CSCC
T ss_pred             CCCCEEEEECCCCCCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC-----CCCCC---CCCH
T ss_conf             865779998999999699--9999999999977998999947998642113797069970456-----66610---1560


Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECCCCCCCC--------CCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf             4652012256641024574799718322344--------12306999961843356655376136521002556651454
Q gi|254780401|r  118 IVTSDRKIGVQMLLQEGVDIIIMDDGFHSAD--------LQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI  189 (338)
Q Consensus       118 ~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~--------l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v  189 (338)
                      ..-.--..-.+.+.+.++|+|..-.++.+..        ..+++-++....  +.......-...++.-....+++||.+
T Consensus        83 ~~~~~~~~l~~~i~~~~~DiIh~h~~~~~~~~~~l~~~~~~~~ip~v~~~h--~~~~~~~~~~~~~~~~~~~~~~~ad~i  160 (216)
T 2jjm_A           83 YDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLH--GTDITVLGSDPSLNNLIRFGIEQSDVV  160 (216)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECC--HHHHHTTTTCTTTHHHHHHHHHHSSEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf             358999999999887098489832433116899999875056773355311--222100014778889999999744176


Q ss_pred             HHCCC
Q ss_conf             42044
Q gi|254780401|r  190 LYVGN  194 (338)
Q Consensus       190 i~~~~  194 (338)
                      +....
T Consensus       161 iavS~  165 (216)
T 2jjm_A          161 TAVSH  165 (216)
T ss_dssp             EESCH
T ss_pred             EEECC
T ss_conf             75202


No 108
>>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2} (A:)
Probab=74.61  E-value=2.5  Score=22.48  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=27.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             8998230007888748999999998524731598760
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +...|.   =|+|||-+++-++....+.|.++..++-
T Consensus        26 ~~i~G~---pGsGKT~l~lql~~~~~~~g~~~~yi~~   59 (235)
T 2w0m_A           26 IALTGE---PGTGKTIFSLHFIAKGLRDGDPCIYVTT   59 (235)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             EEEEEC---CCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             999968---9999999999999998762014444434


No 109
>>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:1-166)
Probab=74.60  E-value=2.9  Score=22.07  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             38898899823000788874899999999852473159876
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..+-.++-.|.-   |||||-++.++++.+...++.+...+
T Consensus        35 ~~~~~~ll~Gpp---GtGKT~la~aia~~~~~~~~~~~~~~   72 (166)
T 1l8q_A           35 SLYNPIFIYGSV---GTGKTHLLQAAGNEAKKRGYRVIYSS   72 (166)
T ss_dssp             TSCSSEEEECSS---SSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             667618988899---99899999999999985499759944


No 110
>>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A (A:142-422)
Probab=74.53  E-value=5.6  Score=20.01  Aligned_cols=97  Identities=14%  Similarity=-0.023  Sum_probs=52.5

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC---------CCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC
Q ss_conf             2300078887489999999985247315987604578---------7777558714567887704212332205763465
Q gi|254780401|r   50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR---------KSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT  120 (338)
Q Consensus        50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~---------~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~  120 (338)
                      |=+.-=|+|||-+...+++........++...++.+.         .....+.+...       -|||.+..-.+|-.  
T Consensus        37 ~I~~~~g~GKt~ll~~i~~~~~~~~~v~~~~~~~~~e~~e~~~~~~~~~~svvv~~t-------sd~~~~~r~~~~~~--  107 (281)
T 3ice_A           37 LIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVAST-------FDEPASRHVQVAEX--  107 (281)
T ss_dssp             EEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEEC-------TTSCHHHHHHHHHH--
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHCCCEEEEEC-------CCCCHHHHHHHHHH--
T ss_conf             885489874889999999755406997799999863555556545421143799965-------88735554689999--


Q ss_pred             CCHHHHHHHHCCCCCCE-EEECCCCCCCCCCCEEEEEE
Q ss_conf             20122566410245747-99718322344123069999
Q gi|254780401|r  121 SDRKIGVQMLLQEGVDI-IIMDDGFHSADLQADFSLIV  157 (338)
Q Consensus       121 ~~R~~~~~~~~~~~~di-iIlDDGfQh~~l~rdl~Ivl  157 (338)
                        =..-+++....+-|| +++||=-.|-.-.|.+...+
T Consensus       108 --a~tiAEyfr~~G~~Vlli~DslTr~A~A~reis~~~  143 (281)
T 3ice_A          108 --VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS  143 (281)
T ss_dssp             --HHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCS
T ss_pred             --HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHC
T ss_conf             --999999999859974134275899999998777624


No 111
>>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454)
Probab=74.49  E-value=3.8  Score=21.22  Aligned_cols=27  Identities=37%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             CCCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf             7888748999999998-52473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAV-IDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l-~~~g~~~~ils   81 (338)
                      .|+|||-++..++-.+ ...|.++..+|
T Consensus        22 ~G~GKT~l~l~~~~~~~~~~g~~v~~~s   49 (264)
T 2r6a_A           22 PSVGKTAFALNIAQNVATKTNENVAIFS   49 (264)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             4540279999999723024798369983


No 112
>>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (A:139-330)
Probab=74.48  E-value=1.8  Score=23.47  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=22.8

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..++.+|-   -|+|||-+..+|++++.... +..++-
T Consensus        34 ~~ili~G~---tGsGKTTll~al~~~~~~~~-~~~~ie   67 (192)
T 2pt7_A           34 KNVIVCGG---TGSGKTTYIKSIMEFIPKEE-RIISIE   67 (192)
T ss_dssp             CCEEEEES---TTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred             CCEEEEEC---CCCCCHHHHHHHHHHCCCCC-CEEECC
T ss_conf             86799950---37982788899876412556-333124


No 113
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633)
Probab=73.72  E-value=2.9  Score=22.07  Aligned_cols=27  Identities=37%  Similarity=0.502  Sum_probs=22.9

Q ss_pred             CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf             788874899-999999852473159876
Q gi|254780401|r   55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v-~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||-.+ .++++.+.+.+.++.|++
T Consensus        19 TGSGKT~~~l~~il~~~~~~~~rvLiLa   46 (243)
T 2wv9_A           19 PGAGKTRRILPQIIKDAIQKRLRTAVLA   46 (243)
T ss_dssp             TTTTTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEEEEH
T ss_conf             9885999999999985614699999996


No 114
>>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} (A:93-282)
Probab=73.38  E-value=3.2  Score=21.72  Aligned_cols=31  Identities=29%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             0788874899999999852473159876045
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      --|+|||-++-.|+..+..++.++.++..-.
T Consensus        14 ~~GsGKST~l~~l~~~~~~~~~~~~~~~~d~   44 (190)
T 2ffh_A           14 LQGSGKTTTAAKLALYYKGKGRRPLLVAADT   44 (190)
T ss_dssp             CTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             7667624579999999984498025874354


No 115
>>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} (A:)
Probab=73.34  E-value=6.7  Score=19.46  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             00788874899999999852473159876045787
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      |=-|-|||-.++=+|=.-.-+|++|.|+ ..-++.
T Consensus        35 tG~GKGKTTAAlG~alRA~G~G~rV~ii-QFLKg~   68 (196)
T 1g5t_A           35 TGNGKGKTTAAFGTAARAVGHGKNVGVV-QFIKGT   68 (196)
T ss_dssp             ESSSSCHHHHHHHHHHHHHHTTCCEEEE-ESSCCS
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCCEEEEE-EEEECC
T ss_conf             2499872889999999984389879999-986178


No 116
>>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* (A:1-42,A:107-331)
Probab=72.55  E-value=4.6  Score=20.62  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             7888748999999998524731598
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGF   79 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~i   79 (338)
                      -|||||-++..+++.+...+..+.+
T Consensus        68 pGtGKTtla~ala~~l~~~~~~i~i   92 (267)
T 2vhj_A           68 GNSGKTPLVHALGEALGGKDKYATV   92 (267)
T ss_dssp             CSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             9987999999999986289993881


No 117
>>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} (A:392-511)
Probab=72.21  E-value=3.4  Score=21.57  Aligned_cols=56  Identities=7%  Similarity=-0.045  Sum_probs=35.4

Q ss_pred             CCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC-CC---CCCCHHHH
Q ss_conf             7888748999999998524--7315987604578777755871456788770421233220576-34---65201225
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDK--NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-TI---VTSDRKIG  126 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~--g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-v~---V~~~R~~~  126 (338)
                      =|+|||-++.+|.+.|.+.  |..+-+| -               ...-..++.-+-+|++.+- |+   +++.+...
T Consensus        13 sgsGKsTlA~aL~~~L~~~~~G~~~~~L-D---------------GdniRr~~~vA~ll~~~G~iviva~isP~ei~~   74 (120)
T 1g8f_A           13 LTVSREQLSIALLSTFLQFGGGRYYKIF-E---------------HNNKTELLSLIQDFIGSGSGLIIPDQWEDDKDS   74 (120)
T ss_dssp             CCSCHHHHHHHHHHHHTTSCSCCCEEEC-C---------------CTTCHHHHTTHHHHHHTTCEEEESSCCCGGGGG
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEC-C---------------CCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHH
T ss_conf             9988899999999999860685588731-5---------------587433789999997359637964898761110


No 118
>>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (A:1-196)
Probab=72.01  E-value=2  Score=23.17  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=21.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             8998230007888748999999998524731
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      |+-.|   -+|||||.++..+++.+......
T Consensus        48 vli~G---ppG~GKT~la~~ia~~~~~~~~~   75 (196)
T 2qby_A           48 IFIYG---LTGTGKTAVVKFVLSKLHKKFLG   75 (196)
T ss_dssp             EEEEE---CTTSSHHHHHHHHHHHHHHHTCS
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             89989---99781999999999986520389


No 119
>>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1} (A:)
Probab=71.84  E-value=2.7  Score=22.28  Aligned_cols=39  Identities=26%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             899823000788874899999999852473159876045787
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      |+.+|-   -|+|||-++..|++.|...++.+..+.+.+.+.
T Consensus        16 I~i~G~---~GsGKTT~a~~La~~l~~~~~~~~~~~~~~~~~   54 (186)
T 2yvu_A           16 VWLTGL---PGSGKTTIATRLADLLQKEGYRVEVLDGDWART   54 (186)
T ss_dssp             EEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHT
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             997899---999999999999999713178703667888765


No 120
>>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A* (A:)
Probab=71.60  E-value=4.5  Score=20.72  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=27.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             788874899999999852473159876045787
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      -|+|||-++..|++.+...+..+.....-++..
T Consensus         9 ~GsGKsTla~~L~~~~~~~~~~~~~~~~~~~~~   41 (197)
T 2z0h_A            9 DGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE   41 (197)
T ss_dssp             TTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             879999999999999997799889986899974


No 121
>>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD PG4; 2.27A {Thermotoga maritima} (A:1-109,A:196-228)
Probab=71.33  E-value=3.7  Score=21.31  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             00788874899999999852473159876045787
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      .+|+||+.  =.++++.|.++|+++..++|-....
T Consensus        17 I~GAtG~i--Gr~iv~~Ll~~G~~Vvaivr~~~~~   49 (142)
T 1vm6_A           17 IVGYSGRM--GQEIQKVFSEKGHELVLKVDVNGVE   49 (142)
T ss_dssp             EETTTSHH--HHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             EECCCCHH--HHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf             99998979--9999999966999599997888377


No 122
>>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379)
Probab=71.25  E-value=4.6  Score=20.67  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=23.0

Q ss_pred             CCCCCCH-HHHHHHHHHHHCCCCEEEEE
Q ss_conf             7888748-99999999852473159876
Q gi|254780401|r   55 GGTGKTP-TALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP-~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||= +..++++.+.+.|.++.+|+
T Consensus        11 TGSGKT~~~~~~ii~~~~~~g~rvLvLa   38 (225)
T 2v6i_A           11 PGAGKTRRVLPQLVREAVKKRLRTVILA   38 (225)
T ss_dssp             TTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf             9878889999999998762798599993


No 123
>>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} (A:1-167)
Probab=71.24  E-value=2.3  Score=22.73  Aligned_cols=29  Identities=28%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88988998230007888748999999998524
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .+-.++-.|=   -|||||-++.++|+.+...
T Consensus        37 ~~~~iLl~Gp---pGtGKT~lA~alA~~~~~~   65 (167)
T 1hqc_A           37 PLEHLLLFGP---PGLGKTTLAHVIAHELGVN   65 (167)
T ss_dssp             CCCCCEEECC---TTCCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             8875998898---9988999999999986889


No 124
>>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032} (A:1-194)
Probab=71.21  E-value=4.6  Score=20.63  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             78887489999999985247315987
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      -|||||=++..++..|...+....++
T Consensus        31 ~GtGKT~lA~~la~~l~~~~~~~~~~   56 (194)
T 3b85_A           31 AGSGKTYLAXAKAVQALQSKQVSRII   56 (194)
T ss_dssp             TTSSTTHHHHHHHHHHHHTTSCSEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99739999999999876314510156


No 125
>>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A (A:1-300)
Probab=71.19  E-value=5.6  Score=20.05  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC-EEEECHHHHHHCC
Q ss_conf             234898999999997564798-7998546634382
Q gi|254780401|r  257 HAHLSDKKIAYLLDQAQQKGL-ILVTTAKDAMRLH  290 (338)
Q Consensus       257 Hh~ys~~dl~~i~~~a~~~~~-~iiTTEKD~VKL~  290 (338)
                      +.--+++.+..+++.|..... .|.-=|=|++...
T Consensus       208 ~~G~~~~~i~~~F~~a~~~~p~iif~de~d~~~~~  242 (300)
T 2zan_A          208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS  242 (300)
T ss_dssp             ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf             32449999999999998708752111023343115


No 126
>>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:347-549)
Probab=71.13  E-value=7.5  Score=19.11  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=15.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|+|||=+....+....+++.++.|++
T Consensus        52 TGsGKT~~~~l~~~~~~~~~~~~lil~   78 (203)
T 1gm5_A           52 VGSGKTVVAQLAILDNYEAGFQTAFMV   78 (203)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred             CCCCCEEEEHHHHHHHHHCCCCEEEEE
T ss_conf             898670522844899996389789993


No 127
>>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} (A:)
Probab=71.12  E-value=7.5  Score=19.11  Aligned_cols=137  Identities=15%  Similarity=0.060  Sum_probs=66.8

Q ss_pred             CCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC------
Q ss_conf             89889-98230007888748999999998524731598760457877775587145678877042123322057------
Q gi|254780401|r   43 PIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA------  115 (338)
Q Consensus        43 ~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~------  115 (338)
                      +.++| .||.   -|+|||-++-.|++.+...|.++++++..-+..........      .-.+-|.......+      
T Consensus        54 ~~~~V~ivG~---pnaGKSTLln~L~~~~~~~~~~~~~v~~~~~~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~d  124 (337)
T 2qm8_A           54 RAIRVGITGV---PGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILG------DKTRXARLAIDRNAFIRPSP  124 (337)
T ss_dssp             CSEEEEEECC---TTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSC------CGGGSTTGGGCTTEEEECCC
T ss_pred             CCEEEECCCC---CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH------HHHHHHHHHCCCCEEECCCC
T ss_conf             8249962289---99889999999999985189831111035664120323750------56789987424541331552


Q ss_pred             CCCCCCCHHH----HHHHHCCCCCCEEEE--C--CC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH
Q ss_conf             6346520122----566410245747997--1--83-2234412306999961843356655376136521002556651
Q gi|254780401|r  116 VTIVTSDRKI----GVQMLLQEGVDIIIM--D--DG-FHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV  186 (338)
Q Consensus       116 pv~V~~~R~~----~~~~~~~~~~diiIl--D--DG-fQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra  186 (338)
                      ...++.....    +...+.....|.+++  +  ++ ........+...++.+.......-.       .. .. ...++
T Consensus       125 ~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~-~~-~~~~~  195 (337)
T 2qm8_A          125 SSGTLGGVAAKTRETXLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLXLPGAGDELQG-------IK-KG-IFELA  195 (337)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------------CC-TT-HHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCHHCCCCEEEEEEECCCCCCHHHH-------HC-HH-HHHHH
T ss_conf             23542211676799998751179864888533343031010367628999832554234666-------22-05-75420


Q ss_pred             HHHHHCCCCHH
Q ss_conf             45442044124
Q gi|254780401|r  187 DAILYVGNKKN  197 (338)
Q Consensus       187 d~vi~~~~~~~  197 (338)
                      +.+++++.+.-
T Consensus       196 ~~i~~nK~D~~  206 (337)
T 2qm8_A          196 DXIAVNKADDG  206 (337)
T ss_dssp             SEEEEECCSTT
T ss_pred             HEEEEECCCCC
T ss_conf             03577410255


No 128
>>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} (A:1-335)
Probab=71.03  E-value=1.7  Score=23.69  Aligned_cols=40  Identities=30%  Similarity=0.308  Sum_probs=24.9

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE------EEECCCCC
Q ss_conf             88988998230007888748999999998524731598------76045787
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF------LSRGYGRK   87 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i------lsRGYg~~   87 (338)
                      .+--++-.|-   -|||||-++.+||+.+..   ....      .+.||+++
T Consensus        49 ~~~~~Ll~GP---pGtGKT~lakalA~~l~~---~~~~i~~s~~~~~g~~~~   94 (335)
T 1g41_A           49 TPKNILMIGP---TGVGKTEIARRLAKLANA---PFIKVEATKFTEVGYVGK   94 (335)
T ss_dssp             CCCCEEEECC---TTSSHHHHHHHHHHHTTC---CEEEEEGGGGC----CCC
T ss_pred             CCCCEEEECC---CCCCHHHHHHHHHHHHCC---CEEEEECCCEEEEEECCC
T ss_conf             6552799899---998899999999998589---879850561033000257


No 129
>>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190)
Probab=70.64  E-value=4.6  Score=20.64  Aligned_cols=89  Identities=17%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC--------CCCE-EEECCCCCHHHHC-----CHHHHHHH--C--C
Q ss_conf             07888748999999998524731598760457877--------7755-8714567887704-----21233220--5--7
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS--------RISF-RVDLEKHSAYDVG-----DEPLLLAR--R--A  115 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~--------~~~~-~v~~~~~~~~~vG-----DEp~lla~--~--~  115 (338)
                      .||| =-|=+.-+.+.|+++|++++|+|.+.....        ...+ .+.    ++.+++     -|.+..+.  .  .
T Consensus        13 ~~~~-l~pgv~e~L~~Lk~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~----~~~~~~~~Kp~~~~~~~a~~~l~~~   87 (124)
T 2fi1_A           13 LGGT-LFEGVSDLLEDISNQGGRHFLVSHRNDQVLEILEKTSIAAYFTEVV----TSSSGFKRKPNPESMLYLREKYQIS   87 (124)
T ss_dssp             TBTT-BCTTHHHHHHHHHHTTCEEEEECSSCTHHHHHHHHTTCGGGEEEEE----CGGGCCCCTTSCHHHHHHHHHTTCS
T ss_pred             CCCC-CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             8997-5620699986400120121202322222222223333222222222----2222344563299999999975999


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf             63465201225664102457479971832234
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA  147 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~  147 (338)
                      ++++-.|+...++.+.+.+...|...+|.+..
T Consensus        88 ~~l~VgD~~~Di~aA~~aGi~~i~v~~g~~~~  119 (124)
T 2fi1_A           88 SGLVIGDRPIDIEAGQAAGLDTHLFTSIVNLR  119 (124)
T ss_dssp             SEEEEESSHHHHHHHHHTTCEEEECSCHHHHH
T ss_pred             CEEEECCCHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf             76999079999999998599799999988737


No 130
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443)
Probab=70.56  E-value=1.9  Score=23.44  Aligned_cols=39  Identities=21%  Similarity=0.059  Sum_probs=29.2

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             988998230007888748999999998524731598760457
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      -|++..|-   =|||||-+....+..|...|..+....++..
T Consensus        17 ~~~lI~G~---pGTGKT~tl~~~i~~ll~~~~~~~~~~~~~~   55 (243)
T 1w36_B           17 GERLIEAS---AGTGKTFTIAALYLRLLLGLGGSAAFPRPLT   55 (243)
T ss_dssp             SCEEEECC---TTSCHHHHHHHHHHHHHTTCSSSSSCSSCCC
T ss_pred             CCEEEEEE---CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             99799993---7304889999999999841764433457999


No 131
>>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (B:1-196)
Probab=70.47  E-value=2.3  Score=22.77  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             988998230007888748999999998524
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      -.++-.|   -+|||||-++.++++.+...
T Consensus        46 ~~ili~G---ppGtGKT~la~~i~~~~~~~   72 (196)
T 2qby_B           46 FSNLFLG---LTGTGKTFVSKYIFNEIEEV   72 (196)
T ss_dssp             CEEEEEE---CTTSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEC---CCCCCHHHHHHHHHHHHHHH
T ss_conf             8658987---99884999999999997531


No 132
>>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
Probab=70.43  E-value=5.1  Score=20.34  Aligned_cols=111  Identities=16%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCC-CCCCCCH
Q ss_conf             823000788--874899999999852473159876045787777558714567--88770421233220576-3465201
Q gi|254780401|r   49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAV-TIVTSDR  123 (338)
Q Consensus        49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~p-v~V~~~R  123 (338)
                      ||=+|.||-  |=-..+..+++.+..+|+++.-+.+||.+-..+.+..-+..+  .....|--.+ -..+++ .---.++
T Consensus         5 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~L-gtsR~~~~~~~~~~   83 (185)
T 1pfk_A            5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFL-GSARFPEFRDENIR   83 (185)
T ss_dssp             EEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTT-CCCCCGGGGSHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEE-CCCCCCCCCCHHHH
T ss_conf             99986588867789999999999987799999991667887279868689999977985799722-47788866657788


Q ss_pred             HHHHHHHCCCCCCEEEE---CCCCCCCCCC--CEEEEEEECC
Q ss_conf             22566410245747997---1832234412--3069999618
Q gi|254780401|r  124 KIGVQMLLQEGVDIIIM---DDGFHSADLQ--ADFSLIVVNS  160 (338)
Q Consensus       124 ~~~~~~~~~~~~diiIl---DDGfQh~~l~--rdl~Ivl~d~  160 (338)
                      .++++.+.+.+.|.+|.   ||-++--..-  -++.++.+..
T Consensus        84 ~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vvgiPk  125 (185)
T 1pfk_A           84 AVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPG  125 (185)
T ss_dssp             HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB
T ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             899999997699889993693689999997643674331211


No 133
>>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} (A:)
Probab=70.36  E-value=2.1  Score=23.06  Aligned_cols=29  Identities=24%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             98899823000788874899999999852473
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNL   75 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~   75 (338)
                      -.++-+|=   =|||||-++..||+.|....+
T Consensus        44 ~~iLl~GP---pGtGKTtla~ala~~l~~~~~   72 (187)
T 2p65_A           44 NNPILLGD---PGVGKTAIVEGLAIKIVQGDV   72 (187)
T ss_dssp             CEEEEESC---GGGCHHHHHHHHHHHHHTTCS
T ss_pred             CCEEEECC---CCCCHHHHHHHHHHHHHHCCC
T ss_conf             78068647---640147999999999982899


No 134
>>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} (A:)
Probab=70.02  E-value=1.7  Score=23.78  Aligned_cols=32  Identities=16%  Similarity=0.035  Sum_probs=28.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             78887489999999985247315987604578
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      -|+|||-++..|++.|...++.+..+.|....
T Consensus         9 ~GsGKST~a~~L~~~l~~~~i~~~~~~~~~~~   40 (214)
T 1gtv_A            9 DGAGKRTLVEKLSGAFRAAGRSVATLAFPRYG   40 (214)
T ss_dssp             EEEEHHHHHHHHHHHHHEEEEEEEEEESSEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             87889999999999998789978998469999


No 135
>>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis} (A:)
Probab=70.01  E-value=2.9  Score=22.07  Aligned_cols=40  Identities=15%  Similarity=0.012  Sum_probs=32.0

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8899823000788874899999999852473159876045787
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      -|...|+.   |+|||-++..|++.|...+..+..+.|-+...
T Consensus        23 ~I~i~G~~---GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~   62 (223)
T 3ld9_A           23 FITFEGID---GSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG   62 (223)
T ss_dssp             EEEEECST---TSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             89988998---89999999999999886389854997408998


No 136
>>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:261-403)
Probab=69.96  E-value=3.6  Score=21.37  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=26.3

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9889982300078887489999999985247315987
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      -++|.    ..||||=||+...+-..+.+.+-++..+
T Consensus         7 ~~lv~----iagG~GItP~~s~l~~l~~~~~~~v~l~   39 (143)
T 1cqx_A            7 TPIVL----ISGGVGLTPMVSMLKVALQAPPRQVVFV   39 (143)
T ss_dssp             SCEEE----EESSCCHHHHHHHHHHHTCSSCCCEEEE
T ss_pred             CEEEE----EEECCCCCCHHHHHHHHHHCCCCHHHHC
T ss_conf             31699----9925875227899998876044302312


No 137
>>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} (A:1-192)
Probab=69.62  E-value=4.2  Score=20.93  Aligned_cols=28  Identities=32%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             8998230007888748999999998524731
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      ++-.|-   .|||||-++.++++.+...-..
T Consensus        47 ili~Gp---pGtGKT~~a~~ia~~l~~~~~~   74 (192)
T 1fnn_A           47 ATLLGR---PGTGKTVTLRKLWELYKDKTTA   74 (192)
T ss_dssp             EEEECC---TTSSHHHHHHHHHHHHTTSCCC
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHHHCCC
T ss_conf             799859---9881999999999997763688


No 138
>>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} (A:88-289)
Probab=68.76  E-value=7  Score=19.33  Aligned_cols=125  Identities=7%  Similarity=-0.055  Sum_probs=59.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC----HHHHHH
Q ss_conf             07888748999999998524-7315987604578777755871456788770421233220576346520----122566
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD----RKIGVQ  128 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~----R~~~~~  128 (338)
                      -=|||||=+.+..+...... +.+..++.              +......+.=+|..-......+.+...    ......
T Consensus        49 ~tGsGKT~~~~~~~~~~~~~~~~~~~ii~--------------p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (202)
T 2oca_A           49 PTSAGRSLIQALLARYYLENYEGKILIIV--------------PTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKY  114 (202)
T ss_dssp             CSTTTHHHHHHHHHHHHHHHCSSEEEEEE--------------SSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEC--------------CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEC
T ss_conf             55502568999999987624786599972--------------7577999999999875235422203542665200002


Q ss_pred             HHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHH
Q ss_conf             4102457479971832234412306999961843356655376136521002556651454420441245
Q gi|254780401|r  129 MLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNV  198 (338)
Q Consensus       129 ~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~  198 (338)
                      .-........+.+...+......+++.+++|-..-+      -.+.+++-+....+....+..|+.+.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~DEah~~------~~~~~~~~~~~~~~~~~~l~lTATp~~~  178 (202)
T 2oca_A          115 KNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLA------TGKSISSIISGLNNCMFKFGLSGSLRDG  178 (202)
T ss_dssp             CTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGC------CHHHHHHHGGGCTTCCEEEEEESCGGGC
T ss_pred             CCCCEEEEEECCCHHHHHHHHCCCCCCCEEECCCCC------CCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             557619998332100123553024452000000112------3210100112104321001100233577


No 139
>>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} (A:)
Probab=68.45  E-value=0.81  Score=26.00  Aligned_cols=37  Identities=14%  Similarity=0.149  Sum_probs=28.8

Q ss_pred             CCCEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             8988998-230007888748999999998524731598760
Q gi|254780401|r   43 PIPVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        43 ~~pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .-++|+| |..   |+|||-++..|++.|...++.+..+.+
T Consensus        13 ~~~~I~i~G~~---GsGKSTla~~L~~~l~~~~~~~~~~~~   50 (223)
T 3hdt_A           13 KNLIITIEREY---GSGGRIVGKKLAEELGIHFYDDDILKL   50 (223)
T ss_dssp             CCEEEEEEECT---TSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred             CCEEEEECCCC---CCCHHHHHHHHHHHHCCCEECCHHHHH
T ss_conf             99799845899---899799999999991997886189999


No 140
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:1-160)
Probab=68.33  E-value=1.7  Score=23.77  Aligned_cols=31  Identities=35%  Similarity=0.550  Sum_probs=24.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             9889982300078887489999999985247315
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      -+++..|.   -|||||.++..+|+.+......+
T Consensus        39 ~~~Ll~Gp---pGtGKT~~a~~la~~l~~~~~~~   69 (160)
T 2chq_A           39 PHLLFSGP---PGTGKTATAIALARDLFGENWRD   69 (160)
T ss_dssp             CCEEEESS---SSSSHHHHHHHHHHHHHTTCHHH
T ss_pred             CEEEEECC---CCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             77998897---99999999999998725454565


No 141
>>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} (A:1-67,A:132-252)
Probab=68.13  E-value=5.9  Score=19.89  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=25.1

Q ss_pred             EEECCEEECCCCCCHHHHHHHHHHHHCC-----CCEEEEE
Q ss_conf             9982300078887489999999985247-----3159876
Q gi|254780401|r   47 ICVGGFVMGGTGKTPTALAIAKAVIDKN-----LKPGFLS   81 (338)
Q Consensus        47 I~VGNitvGGtGKTP~v~~l~~~l~~~g-----~~~~ils   81 (338)
                      +.||=.-.-|+|||-++..|++.|...+     .+++++|
T Consensus        23 ~~i~i~G~~gsGKst~a~~l~~~l~~~~~~~~~~~~~~~~   62 (188)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILS   62 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf             9999889897788999999999966355555665404872


No 142
>>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:184-444)
Probab=68.12  E-value=4.3  Score=20.84  Aligned_cols=27  Identities=33%  Similarity=0.257  Sum_probs=25.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|+|||-++..++..+...+.++..++
T Consensus        23 ~G~GKT~l~~~l~~~~~~~~~~~~~~~   49 (261)
T 3bgw_A           23 PSMGKTAFALKQAKNMSDNDDVVNLHS   49 (261)
T ss_dssp             SSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             665148999865577641588068751


No 143
>>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315)
Probab=68.10  E-value=4.9  Score=20.47  Aligned_cols=28  Identities=32%  Similarity=0.222  Sum_probs=25.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      =|+|||-++..++......|.++..+|-
T Consensus        28 ~G~GKT~l~~~~~~~~~~~g~~~~~~~~   55 (266)
T 3bh0_A           28 PSMGKTAFALKQAKNMSDNDDVVNLHSL   55 (266)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             3441489999999987501472589622


No 144
>>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A (A:146-408)
Probab=67.95  E-value=4.9  Score=20.45  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=24.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             8887489999999985247315987604
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |||||-+...++..+...+.++.+++..
T Consensus        60 GTGKT~ti~~ii~~ll~~~~~~~~~~~~   87 (263)
T 2gk6_A           60 GTGKTVTSATIVYHLARQGNGPVLVCAP   87 (263)
T ss_dssp             TSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9888999999999987520212156506


No 145
>>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:170-361)
Probab=67.90  E-value=5.2  Score=20.27  Aligned_cols=22  Identities=32%  Similarity=0.349  Sum_probs=18.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             0788874899999999852473
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNL   75 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~   75 (338)
                      .-|+|||=++++++..+...+.
T Consensus        37 ~tGsGKT~~~~~~~~~~~~~~~   58 (192)
T 3h1t_A           37 ATGTGKTVVAFQISWKLWSARW   58 (192)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7898415899999999998633


No 146
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:176-323,A:482-562)
Probab=67.89  E-value=4.7  Score=20.59  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=22.1

Q ss_pred             CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf             788874899-999999852473159876
Q gi|254780401|r   55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v-~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||=.+ ..+++.+.+.|.++.||.
T Consensus        20 TGsGKT~~~l~~i~~~~~~~~~rvLiLa   47 (229)
T 2vbc_A           20 PGAGKTKRILPSIVREALKRRLRTLILA   47 (229)
T ss_dssp             TTTCCTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf             9879989999999997255799999985


No 147
>>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} (A:)
Probab=67.79  E-value=3.2  Score=21.72  Aligned_cols=48  Identities=15%  Similarity=0.250  Sum_probs=39.1

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCEEEEC-----CCCCC----CCCCCEEEEEEECCCC
Q ss_conf             763465201225664102457479971-----83223----4412306999961843
Q gi|254780401|r  115 AVTIVTSDRKIGVQMLLQEGVDIIIMD-----DGFHS----ADLQADFSLIVVNSHR  162 (338)
Q Consensus       115 ~pv~V~~~R~~~~~~~~~~~~diiIlD-----DGfQh----~~l~rdl~Ivl~d~~~  162 (338)
                      +.|..+.+-.+|.+.+.+..+|+||+|     ||++-    ++..++.-|+++.+..
T Consensus        29 ~~v~~a~~g~eAl~~~~~~~~dliilD~mp~~dG~e~~~~ir~~~~~~pii~lT~~~   85 (142)
T 2qxy_A           29 FNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAYV   85 (142)
T ss_dssp             CEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred             CEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             999997657999999983188899723577504999999999978999789997458


No 148
>>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A (A:322-584)
Probab=67.74  E-value=4.9  Score=20.45  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=24.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             8887489999999985247315987604
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |||||-+...++..+...+.++.+++..
T Consensus        60 GTGKT~ti~~ii~~ll~~~~~~~~~~~~   87 (263)
T 2wjy_A           60 GTGKTVTSATIVYHLARQGNGPVLVCAP   87 (263)
T ss_dssp             TSCHHHHHHHHHHHHHTTCSSCEEEEES
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             9868899999999998617986899946


No 149
>>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} (B:)
Probab=67.53  E-value=0.37  Score=28.40  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=34.5

Q ss_pred             CEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf             88998-23000788874899999999852473159876045787777
Q gi|254780401|r   45 PVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI   90 (338)
Q Consensus        45 pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~   90 (338)
                      .+|+| |+.   |+|||-++..|++.|...++.+..+.|.++.....
T Consensus        25 ~~I~i~G~~---GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~   68 (263)
T 1p5z_B           25 KKISIEGNI---AAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQ   68 (263)
T ss_dssp             EEEEEECST---TSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC-
T ss_pred             CEEEEECCC---CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf             989998988---88699999999999742798576631038864177


No 150
>>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A* (A:125-372)
Probab=67.47  E-value=8.1  Score=18.88  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=19.2

Q ss_pred             CCCCCCHHHHHHHHHHHHC-CCCEEEE
Q ss_conf             7888748999999998524-7315987
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDK-NLKPGFL   80 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~-g~~~~il   80 (338)
                      -|||||-+..+|++++-+. +..+.++
T Consensus        21 tGsGKTtll~al~~~~~~~~~~~ii~~   47 (248)
T 2ewv_A           21 TGSGKSTTIASMIDYINQTKSYHIITI   47 (248)
T ss_dssp             SSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCEEEC
T ss_conf             877730199999998760345441103


No 151
>>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:91-230)
Probab=67.45  E-value=8.9  Score=18.59  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=36.2

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCCC-------------CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             86389874155357899988740100001-------------2214332348989999999975647987998546634
Q gi|254780401|r  222 GKKVLAFSGIADTEKFFTTVRQLGALIEQ-------------CYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAM  287 (338)
Q Consensus       222 ~k~v~afsGIa~P~~F~~~L~~~g~~i~~-------------~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~V  287 (338)
                      +++++++.    .+.+.+.|++.|+.+..             ......+..|+-.++.+......+.++++|+|-.|.+
T Consensus        19 ~~~v~~iG----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~aVv~g~~~~~~~~~l~~a~~~l~~~~~~~i~tN~D~~   93 (140)
T 2oyc_A           19 PGAVFVLG----GEGLRAELRAAGLRLAGDPSAGDGAAPRVRAVLVGYDEHFSFAKLREACAHLRDPECLLVATDRDPW   93 (140)
T ss_dssp             CCEEEEES----CHHHHHHHHHTTCEETTSCCCC---CCCEEEEEECCCTTCCHHHHHHHHHHHTSTTSEEEESCCCCE
T ss_pred             CCEEEEEC----CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             62588854----7337899998376523663554333210132031465334677777899987425652242036532


No 152
>>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} (A:)
Probab=67.12  E-value=2.1  Score=22.99  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=27.0

Q ss_pred             EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             982300078887489999999985247315987604
Q gi|254780401|r   48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .-|+.   |+|||-++..|++.|..+|..+.+++--
T Consensus        12 ieG~~---GsGKTTl~~~L~~~l~~~~~~~~~~e~~   44 (334)
T 1p6x_A           12 LDGVY---GIGKSTTGRVMASAASGGSPTLYFPEPM   44 (334)
T ss_dssp             EECST---TSSHHHHHHHHHSGGGCSSCEEEECCCH
T ss_pred             EECCC---CCCHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             98887---7889999999999866799779982763


No 153
>>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} (A:)
Probab=66.79  E-value=4.4  Score=20.77  Aligned_cols=94  Identities=13%  Similarity=-0.017  Sum_probs=42.5

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCEEEECCCCCHHHHCCHH----HHHHHCCC------CCCCC
Q ss_conf             07888748999999998524731598760--45787777558714567887704212----33220576------34652
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR--GYGRKSRISFRVDLEKHSAYDVGDEP----LLLARRAV------TIVTS  121 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR--GYg~~~~~~~~v~~~~~~~~~vGDEp----~lla~~~p------v~V~~  121 (338)
                      --|+|||-+.-.|+..+....=.+-+--.  .+.+...+......... ....+...    .-+.+...      ..-+.
T Consensus         8 pnGaGKSTLlk~i~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   86 (178)
T 1ye8_A            8 EPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK-KKIFSSKFFTSKKLVGSYGVNVQYFEELAIP   86 (178)
T ss_dssp             CTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCC-EEEEEETTCCCSSEETTEEECHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             998089999999983088886269989823455645425202443032-3566552023445666641576255642101


Q ss_pred             CHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf             012256641024574799718322344
Q gi|254780401|r  122 DRKIGVQMLLQEGVDIIIMDDGFHSAD  148 (338)
Q Consensus       122 ~R~~~~~~~~~~~~diiIlDDGfQh~~  148 (338)
                      .++.+...+.-.+++++|||--..+.-
T Consensus        87 k~R~~ia~al~~~P~iLiLDEPt~~lD  113 (178)
T 1ye8_A           87 ILERAYREAKKDRRKVIIIDEIGKXEL  113 (178)
T ss_dssp             HHHHHHHHHHHCTTCEEEECCCSTTGG
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             278999999724998899834785322


No 154
>>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:1-145,A:303-387)
Probab=66.77  E-value=5.2  Score=20.29  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=22.4

Q ss_pred             CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf             788874899-999999852473159876
Q gi|254780401|r   55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v-~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||=.+ .++++...+++.++.++.
T Consensus        17 TGsGKT~~~l~~i~~~~~~~~~rvLvL~   44 (230)
T 1yks_A           17 PGAGKTRRFLPQILAECARRRLRTLVLA   44 (230)
T ss_dssp             TTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEEH
T ss_conf             9974989999999999860799299984


No 155
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1405-1637)
Probab=66.09  E-value=5  Score=20.38  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++.++.....+|.++..++
T Consensus        32 pGsGKT~l~lq~~~~~~~~g~~~~yi~   58 (233)
T 3cmu_A           32 ESSGKTTLTLQVIAAAQREGKTCAFID   58 (233)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             878832699999999986388479941


No 156
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283)
Probab=66.00  E-value=6  Score=19.81  Aligned_cols=35  Identities=11%  Similarity=0.119  Sum_probs=23.5

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf             9889982300078887489999999985247----3159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKN----LKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g----~~~~ils   81 (338)
                      -+++.+|   .-|||||-+....+.++...+    .++.+++
T Consensus        23 ~~~lV~g---~aGsGKT~~~~~~i~~ll~~~~~~~~~il~~t   61 (201)
T 2is6_A           23 SNLLVLA---GAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT   61 (201)
T ss_dssp             SCEEEEC---CTTSSHHHHHHHHHHHHHHTSCCCGGGEEEEE
T ss_pred             CCEEEEE---ECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             9989998---28659999999999999981999934099981


No 157
>>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A (W:96-285)
Probab=65.90  E-value=6.1  Score=19.76  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             007888748999999998524731598760
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      =.=|+|||-+...|+..++..+.++.+...
T Consensus        13 GpnG~GKSTll~~l~gll~~~~g~v~~~g~   42 (190)
T 2j37_W           13 GLQGSGKTTTCSKLAYYYQRKGWKTCLICA   42 (190)
T ss_dssp             CSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCEEEC
T ss_conf             575567532599999999741354311201


No 158
>>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:)
Probab=65.85  E-value=5.6  Score=20.03  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             74899999999852473159876
Q gi|254780401|r   59 KTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        59 KTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .||.++||+..|+++|+.|.|.+
T Consensus        21 q~p~~lyl~~~Lk~~G~~v~Va~   43 (157)
T 1kjn_A           21 QIPLAIYTSHKLKKKGFRVTVTA   43 (157)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             34799999999986697359965


No 159
>>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} (A:64-267)
Probab=65.85  E-value=4.5  Score=20.68  Aligned_cols=67  Identities=18%  Similarity=-0.119  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             9999999974046433889889982300078887489999999985247315987604578777755871
Q gi|254780401|r   26 YSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVD   95 (338)
Q Consensus        26 y~~~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~   95 (338)
                      ..++..+.+-+..+.....-++..|.   ||||||-++..|++.+-..+...---++.+-....+...+.
T Consensus        24 ~~~~~~l~~~l~~~~~~~~~~~l~G~---~gtGKStl~~~l~~l~g~~~~~~~~~~~~~~~~l~gk~i~i   90 (204)
T 1u0j_A           24 QYAASVFLGWATKKFGKRNTIWLFGP---ATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIW   90 (204)
T ss_dssp             HHHHHHHHHHHTTCSTTCCEEEEECS---TTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEE
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEECC---CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99999999997389977459999889---98878999999999807442013557887663236987999


No 160
>>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} (A:)
Probab=65.81  E-value=5.9  Score=19.88  Aligned_cols=35  Identities=11%  Similarity=0.255  Sum_probs=27.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             0007888748999999998524731598760457877
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS   88 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~   88 (338)
                      +.+||||-  +=.+|++.|.++|++|..++|.-....
T Consensus         8 lItGatG~--iG~~l~~~L~~~g~~V~~~~R~~~~~~   42 (227)
T 3dhn_A            8 VLIGASGF--VGSALLNEALNRGFEVTAVVRHPEKIK   42 (227)
T ss_dssp             EEETCCHH--HHHHHHHHHHTTTCEEEEECSCGGGCC
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHCC
T ss_conf             99889988--999999999978498999988836533


No 161
>>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} (A:1-171,A:340-364)
Probab=65.32  E-value=9.8  Score=18.31  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             788874899999999852473159876045787
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      +..|-+-.+..|++.|.++|+.|.+++..++..
T Consensus        15 ~~gG~~~~~~~la~~L~~~G~eV~v~~~~~~~~   47 (196)
T 1f0k_A           15 GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME   47 (196)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf             846879999999999997889799997887065


No 162
>>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} (A:)
Probab=65.02  E-value=6.1  Score=19.74  Aligned_cols=40  Identities=15%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             CCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             98899-82300078887489999999985247315987604578
Q gi|254780401|r   44 IPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        44 ~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      -+||+ -|+   -|+|||-++-.|++.|...+.....+..=+..
T Consensus        22 ~~iI~I~G~---~GsGKtTla~~L~~~l~~~~~~~~~~~~~~~~   62 (201)
T 1rz3_A           22 RLVLGIDGL---SRSGKTTLANQLSQTLREQGISVCVFHXDDHI   62 (201)
T ss_dssp             SEEEEEEEC---TTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CEEEEEECC---CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             889997798---73799999999999836158851230231112


No 163
>>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} (A:)
Probab=65.02  E-value=3  Score=21.91  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             889889982300078887489999999985247
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      .+-.++-+|-   .|||||-++.+||+.|....
T Consensus        42 ~~~~~Ll~Gp---pGtGKT~~A~~lA~~l~~~~   71 (195)
T 1jbk_A           42 TKNNPVLIGE---PGVGKTAIVEGLAQRIINGE   71 (195)
T ss_dssp             SSCEEEEECC---TTSCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEC---CCCCCHHHHHHHHHHHHHCC
T ss_conf             8899468607---98782899999999998079


No 164
>>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* (A:)
Probab=64.20  E-value=5.9  Score=19.89  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             788874899999999852473159876045787
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      =|+|||-++..|++.|....+....+.+...+.
T Consensus        14 ~GsGKTTla~~La~~l~~~~~~~~~~~~~~~~~   46 (179)
T 2pez_A           14 SGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ   46 (179)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHC
T ss_conf             999999999999999723698742202677630


No 165
>>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} (A:82-312)
Probab=64.10  E-value=4.1  Score=21.00  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             38898899823000788874899999999852473159876
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..+.|||.|    +|--|||-++-+|+..|+..|++++..+
T Consensus        16 ~~~~~vI~V----tGT~GKTtt~~~l~~iL~~~g~~~~~~~   52 (231)
T 1gg4_A           16 QVPARVVAL----TGSSGKTSVKEXTAAILSQCGNTLYTAG   52 (231)
T ss_dssp             HSCCEEEEE----ECSSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCCCCEEEE----EECCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             898608999----8069963689999976776402440677


No 166
>>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A (A:1-255)
Probab=63.96  E-value=2.9  Score=22.10  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=25.9

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             338898899823000788874899999999852473159876
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..+|--|+-+|.=   |||||-++.+||+.+..   ....++
T Consensus        48 ~~~~~~iLl~GPp---GtGKT~la~alA~~l~~---~~~~i~   83 (255)
T 3hws_A           48 ELGKSNILLIGPT---GSGKTLLAETLARLLDV---PFTMAD   83 (255)
T ss_dssp             CCCCCCEEEECCT---TSSHHHHHHHHHHHTTC---CEEEEE
T ss_pred             CCCCCCEEEECCC---CCCHHHHHHHHHHHHHH---HHHHHH
T ss_conf             5676537998999---88899999999999775---766664


No 167
>>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} (A:1-200)
Probab=63.50  E-value=3.8  Score=21.19  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             988998230007888748999999998524731
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      -.|+.+|-   .|||||-++.++++.+......
T Consensus        45 ~~ili~Gp---~G~GKTtla~~la~~l~~~~~~   74 (200)
T 2v1u_A           45 SNALLYGL---TGTGKTAVARLVLRRLEARASS   74 (200)
T ss_dssp             CCEEECBC---TTSSHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECC---CCCCHHHHHHHHHHHHHHHHCC
T ss_conf             84999899---9782999999999986303023


No 168
>>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} (A:1-265)
Probab=63.46  E-value=11  Score=18.08  Aligned_cols=42  Identities=19%  Similarity=0.210  Sum_probs=32.8

Q ss_pred             CCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             89889-9823000788874899999999852473159876045787
Q gi|254780401|r   43 PIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        43 ~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      ..++| .||.   -|+|||-++-.|+..+...|.++++++.--++.
T Consensus        55 ~~~~v~ivG~---~~aGKSTLln~L~~~~~~~g~~~~~~~~~~~~t   97 (265)
T 2p67_A           55 NTLRLGVTGT---PGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP   97 (265)
T ss_dssp             CSEEEEEEEC---TTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred             CCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             8418974489---999899999999999863688247741588754


No 169
>>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* (A:)
Probab=63.28  E-value=4  Score=21.03  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=26.1

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+..|..   |+|||-++..|++.|...+.......+.
T Consensus         7 I~i~G~~---GsGKsTl~~~La~~l~~~~~~~~~~~~~   41 (204)
T 2v54_A            7 IVFEGLD---KSGKTTQCMNIMESIPANTIKYLNFPQR   41 (204)
T ss_dssp             EEEECCT---TSSHHHHHHHHHHTSCGGGEEEEESSCT
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             9998998---8879999999999983789889997999


No 170
>>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} (A:1-329)
Probab=63.00  E-value=11  Score=18.02  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=26.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|.=.
T Consensus         8 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~   39 (329)
T 1oc2_A            8 IVTGGAG--FIGSNFVHYVYNNHPDVHVTVLDKL   39 (329)
T ss_dssp             EEETTTS--HHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             8968885--8999999999977997399998488


No 171
>>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} (A:23-279)
Probab=62.94  E-value=8.9  Score=18.62  Aligned_cols=26  Identities=27%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             78887489999999985247315987
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      +|+|||-+++.++-.+...+...+..
T Consensus        17 ~G~GKT~l~l~la~~~a~~~~~~g~~   42 (257)
T 1nlf_A           17 GGAGKSMLALQLAAQIAGGPDLLEVG   42 (257)
T ss_dssp             TTSSHHHHHHHHHHHHHTCCCTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99989999999999996599634533


No 172
>>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} (A:)
Probab=62.85  E-value=11  Score=18.00  Aligned_cols=63  Identities=8%  Similarity=-0.063  Sum_probs=38.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf             68638987415535789998874010000122143323489899999999756479879985466
Q gi|254780401|r  221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKD  285 (338)
Q Consensus       221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD  285 (338)
                      .+....-+.-+.|=-.....+-+...  .+.....+...++..|+.+.+.++......++....+
T Consensus       187 ~~~~~~~~i~v~Dva~ai~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~  249 (292)
T 1vl0_A          187 VHDQVGTPTSTVDLARVVLKVIDEKN--YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTE  249 (292)
T ss_dssp             ESSCEECCEEHHHHHHHHHHHHHHTC--CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECST
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf             23654553122122111112222025--6862563688762778999999996998638863377


No 173
>>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} (9:92-330)
Probab=62.77  E-value=3.2  Score=21.77  Aligned_cols=100  Identities=17%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHH-HHCCCCEEEEEEC-CCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC---CC
Q ss_conf             8998230007888748999999998-5247315987604-57877775587145678877042123322057634---65
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAV-IDKNLKPGFLSRG-YGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI---VT  120 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l-~~~g~~~~ilsRG-Yg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~---V~  120 (338)
                      |+.+|.   -|+|||-.+-.++-.+ ..+|.+++|++.- ++-.         ..+-+..+++|.-     .++.   -.
T Consensus        11 v~i~G~---tGsGKST~ipk~~~~~~~~~~~~~~i~~~~prr~~---------a~~~~~~~a~~~~-----~~~~~~~~~   73 (239)
T 2j28_9           11 VLMAGL---QGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA---------AIKQLETLAEQVG-----VDFFPSDVG   73 (239)
T ss_dssp             EEEECS---SSSSSTTTHHHHHHHHHTSSSCCCCBCCCCCSSSC---------SHHHHHHHHHHTT-----CCCCCCSSC
T ss_pred             EEEEEE---CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------HHHHHHHHHHHCC-----CCHHHCCCH
T ss_conf             999963---28875136999999999847985899964545532---------4367888664135-----432110203


Q ss_pred             CCHHH----HHHHHCCCCCCEEEECCCCC--------------CCCCCCEEEEEEECCCC
Q ss_conf             20122----56641024574799718322--------------34412306999961843
Q gi|254780401|r  121 SDRKI----GVQMLLQEGVDIIIMDDGFH--------------SADLQADFSLIVVNSHR  162 (338)
Q Consensus       121 ~~R~~----~~~~~~~~~~diiIlDDGfQ--------------h~~l~rdl~Ivl~d~~~  162 (338)
                      .....    ......-.++|+||+|-.--              .....+|..+++.++..
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~viiDe~her~~~~dlll~l~~~~~~~~~~~~liv~sat~  133 (239)
T 2j28_9           74 QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT  133 (239)
T ss_dssp             CCTTHHHHHHHHHHHHTTCSCEEEEECCCCSSHHHHHHHHHHHHHHHCCSEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             478999999888998658858997588620447889999999974069816999720346


No 174
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:146-331)
Probab=62.55  E-value=4.4  Score=20.76  Aligned_cols=29  Identities=21%  Similarity=0.357  Sum_probs=22.7

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             89889982300078887489999999985247
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      +--++-+|.=   |||||-++.+||+.|....
T Consensus        46 ~~~~Ll~GpP---GtGKT~laralA~~l~~~~   74 (186)
T 1qvr_A           46 KNNPVLIGEP---GVGKTAIVEGLAQRIVKGD   74 (186)
T ss_dssp             CCCCEEEECT---TSCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEECCC---CCCHHHHHHHHHHHHHHCC
T ss_conf             8880797788---7415099999999998569


No 175
>>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* (A:)
Probab=62.55  E-value=3.7  Score=21.28  Aligned_cols=37  Identities=32%  Similarity=0.401  Sum_probs=27.1

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             3889889982300078887489999999985247315987
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      ..+-.++..|.-   |||||-++..+|+.+......+...
T Consensus        36 ~~~~~ilL~Gpp---GtGKT~la~aia~~~~~~~~~~~~~   72 (180)
T 3ec2_A           36 EEGKGLTFVGSP---GVGKTHLAVATLKAIYEKKGIRGYF   72 (180)
T ss_dssp             GGCCEEEECCSS---SSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred             CCCCEEEEECCC---CCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             349879999989---9989999999999877605955999


No 176
>>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} (A:1-214)
Probab=62.49  E-value=4.1  Score=21.01  Aligned_cols=25  Identities=32%  Similarity=0.272  Sum_probs=19.1

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8998230007888748999999998524
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ++.+|   -.|||||-++.++|+.|...
T Consensus        55 ill~G---ppGtGKT~lak~ia~~l~~~   79 (214)
T 1w5s_A           55 YGSIG---RVGIGKTTLAKFTVKRVSEA   79 (214)
T ss_dssp             EECTT---CCSSSHHHHHHHHHHHHHHH
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHHHHH
T ss_conf             86468---99868999999999998763


No 177
>>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:157-348)
Probab=62.37  E-value=4.1  Score=20.97  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             98899823000788874899999999852473
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNL   75 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~   75 (338)
                      -.++-+|-=   |||||-++..||+.+....+
T Consensus        52 ~~iLL~GPP---GtGKT~la~~lA~~l~~~~~   80 (192)
T 1r6b_X           52 NNPLLVGES---GVGKTAIAEGLAWRIVQGDV   80 (192)
T ss_dssp             CEEEEECCT---TSSHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEECCC---CCCHHHHHHHHHHHHHHCCC
T ss_conf             872786577---54489999999999975359


No 178
>>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* (A:1-142)
Probab=62.37  E-value=11  Score=17.94  Aligned_cols=27  Identities=19%  Similarity=0.079  Sum_probs=24.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -++|||-..+-.++.+...|.++.++.
T Consensus        12 M~sGKTt~Ll~~~~~~~~~g~kv~~~k   38 (142)
T 2orw_A           12 MYSGKTTELLSFVEIYKLGKKKVAVFK   38 (142)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             177889999999999998799199998


No 179
>>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:1-160)
Probab=62.35  E-value=4.2  Score=20.90  Aligned_cols=31  Identities=35%  Similarity=0.550  Sum_probs=23.8

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             9889982300078887489999999985247315
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      -+++..|.   -|||||.++..+|+.+......+
T Consensus        39 ~~~Ll~Gp---pGtGKT~~a~~la~~l~~~~~~~   69 (160)
T 2chg_A           39 PHLLFSGP---PGTGKTATAIALARDLFGENWRD   69 (160)
T ss_dssp             CCEEEECS---TTSSHHHHHHHHHHHHHGGGGGG
T ss_pred             CEEEEECC---CCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             85998889---99867789998888875256666


No 180
>>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} (A:274-472)
Probab=62.09  E-value=11  Score=17.91  Aligned_cols=28  Identities=29%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             ECCCCCCHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf             078887489999999985247--3159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKN--LKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g--~~~~ils   81 (338)
                      .=|||||=+.++++..+.+.+  .++.+++
T Consensus        35 ~tGsGKT~~~~~~i~~~~~~~~~~~vlvi~   64 (199)
T 2w00_A           35 TTGSGKTLTSFKAARLATELDFIDKVFFVV   64 (199)
T ss_dssp             CTTSSHHHHHHHHHHHHTTCTTCCEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             489846599999999998374688289995


No 181
>>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5} (A:)
Probab=62.03  E-value=9  Score=18.55  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=23.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      -|+|||-++..|++.|...+..........
T Consensus         9 ~GsGKSTla~~L~~~l~~~~~~~~~~~~~~   38 (195)
T 2pbr_A            9 DGSGKTTQAKKLYEYLKQKGYFVSLYREPG   38 (195)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             889999999999999987799689986899


No 182
>>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} (A:)
Probab=61.95  E-value=3.8  Score=21.26  Aligned_cols=36  Identities=17%  Similarity=0.086  Sum_probs=27.5

Q ss_pred             CCCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899-823000788874899999999852473159876
Q gi|254780401|r   43 PIPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ...+|+ -||+   |+|||-++..|++.|..+|+.+....
T Consensus        48 ~~~~I~iEG~~---GsGKTTl~~~La~~L~~~~~~~~~e~   84 (376)
T 1of1_A           48 TLLRVYIDGPH---GMGKTTTTQLLVALGSRDDIVYVPEP   84 (376)
T ss_dssp             EEEEEEECSST---TSSHHHHHHHHHC----CCEEEECCC
T ss_pred             CEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             50599998986---57899999999987264874872475


No 183
>>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str} (A:)
Probab=61.85  E-value=5.9  Score=19.87  Aligned_cols=30  Identities=17%  Similarity=-0.038  Sum_probs=24.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      -|+|||-++..|++.|...|..+-.....+
T Consensus        13 ~GsGKtTla~~L~~~l~~~~~~~~~~~~~~   42 (213)
T 2plr_A           13 DGSGKSSQATLLKDWIELKRDVYLTEWNSS   42 (213)
T ss_dssp             TTSSHHHHHHHHHHHHTTTSCEEEEETTCC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             987499999999999982898899978999


No 184
>>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} (A:1-201)
Probab=61.73  E-value=3.9  Score=21.16  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=23.9

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             3388988998230007888748999999998524
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ...+.+++-.|-=   |||||-++..||+.+...
T Consensus        47 ~~~~~~iLl~GPp---GtGKT~la~~iA~~l~~~   77 (201)
T 1ofh_A           47 EVTPKNILMIGPT---GVGKTEIARRLAKLANAP   77 (201)
T ss_dssp             HCCCCCEEEECCT---TSSHHHHHHHHHHHHTCC
T ss_pred             CCCCCEEEEECCC---CCCHHHHHHHHHHHHHCC
T ss_conf             7898669998999---988899999999973234


No 185
>>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} (B:)
Probab=61.59  E-value=4.9  Score=20.42  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=19.3

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8998230007888748999999998524
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      |+-.|   -=|||||-++.++|+.+...
T Consensus        36 iLL~G---PpGtGKT~la~aiA~e~~~~   60 (287)
T 1gvn_B           36 FLLGG---QPGSGKTSLRSAIFEETQGN   60 (287)
T ss_dssp             EEEEC---CTTSCTHHHHHHHHHHTTTC
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHCCCC
T ss_conf             99806---89878899999986241897


No 186
>>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} (C:92-279)
Probab=61.37  E-value=7.1  Score=19.31  Aligned_cols=30  Identities=33%  Similarity=0.579  Sum_probs=25.7

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      =|+|||-+.-.|+..++..+-++.+..+--
T Consensus        17 nGsGKSTll~~l~~~~~p~~G~V~~~~~di   46 (188)
T 2v3c_C           17 QGSGKTTTAAKLARYIQKRGLKPALIAADT   46 (188)
T ss_dssp             SSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             123620788999999997799743786311


No 187
>>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:1-179)
Probab=61.07  E-value=4  Score=21.03  Aligned_cols=37  Identities=27%  Similarity=0.175  Sum_probs=25.5

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             3889889982300078887489999999985247315987604
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      ..+-.++-.|-   -|||||-++..||+.+..   ....++..
T Consensus        49 ~~~~~iLl~Gp---pGtGKT~~A~~la~~~~~---~~~~~~~~   85 (179)
T 1in4_A           49 EVLDHVLLAGP---PGLGKTTLAHIIASELQT---NIHVTSGP   85 (179)
T ss_dssp             CCCCCEEEESS---TTSSHHHHHHHHHHHHTC---CEEEEETT
T ss_pred             CCCCEEEEECC---CCCCHHHHHHHHHHHCCC---CCCCCCCC
T ss_conf             88881788898---998899999999982288---74557785


No 188
>>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:1-260,A:376-426)
Probab=61.05  E-value=9.1  Score=18.54  Aligned_cols=102  Identities=14%  Similarity=0.005  Sum_probs=49.2

Q ss_pred             CEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--C--C
Q ss_conf             8899823000--78887489999999985247315987604578777755871456788770421233220576--3--4
Q gi|254780401|r   45 PVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--T--I  118 (338)
Q Consensus        45 pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--v--~  118 (338)
                      +++.=|.|..  -|+|||=+....+-.....|.++.|++              +...-+.+.-++-.-+.+...  |  +
T Consensus       121 ~~l~~g~iv~~~TG~GKTlv~~lp~~~~al~G~~v~iit--------------pt~~LA~q~~~~~~~l~~~lgi~v~~~  186 (311)
T 1nkt_A          121 AALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVT--------------VNDYLAKRDSEWMGRVHRFLGLQVGVI  186 (311)
T ss_dssp             HHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEE--------------SSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE--------------CCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             999379658875688699999999999971799829997--------------698885733998699998819766355


Q ss_pred             CCCCHHHHHHHHCCCCCCEEEECCC-------------CCCCCCCCEEEEEEECCCC
Q ss_conf             6520122566410245747997183-------------2234412306999961843
Q gi|254780401|r  119 VTSDRKIGVQMLLQEGVDIIIMDDG-------------FHSADLQADFSLIVVNSHR  162 (338)
Q Consensus       119 V~~~R~~~~~~~~~~~~diiIlDDG-------------fQh~~l~rdl~Ivl~d~~~  162 (338)
                      .+......  .....++|+++.--|             .++....+.+..+++|-.+
T Consensus       187 ~g~~~~~e--~~~~~~~dIv~~T~~~l~~d~Lr~~~~~~~~~~~~~~l~~~IiDEaD  241 (311)
T 1nkt_A          187 LATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD  241 (311)
T ss_dssp             CTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH
T ss_pred             CCCCCHHH--HHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEECC
T ss_conf             79998699--99744068731679988689987402258776246777613687022


No 189
>>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} (A:)
Probab=61.02  E-value=10  Score=18.13  Aligned_cols=33  Identities=6%  Similarity=0.229  Sum_probs=27.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||-  +=.+|++.|.++|+.+.+++|.-..
T Consensus         4 lVtGatGf--IG~~l~~~L~~~G~~v~~~~r~~~~   36 (273)
T 2ggs_A            4 LITGASGQ--LGIELSRLLSERHEVIKVYNSSEIQ   36 (273)
T ss_dssp             EEETTTSH--HHHHHHHHHTTTSCEEEEESSSCCT
T ss_pred             EEECCCCH--HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99899988--9999999997299899997787667


No 190
>>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} (A:1-65)
Probab=61.01  E-value=10  Score=18.10  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             763465201225664102457479971
Q gi|254780401|r  115 AVTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       115 ~pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      +.|.++.+=.+|.+.+.+..+|+||+|
T Consensus        35 ~~v~~a~~g~~al~~l~~~~~dlil~D   61 (65)
T 3c97_A           35 NDITVVTNGLQALQAYQNRQFDVIIMD   61 (65)
T ss_dssp             SEEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred             CEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf             999998999999999983899889863


No 191
>>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:1-156,A:315-395)
Probab=60.99  E-value=7.7  Score=19.04  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf             788874899-999999852473159876
Q gi|254780401|r   55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v-~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||-.+ ..+++.+.+.+.++.|+.
T Consensus        28 TGSGKT~~~l~~il~~~~~~~~rvlvla   55 (237)
T 2jlq_A           28 PGAGKTKRILPSIVREALLRRLRTLILA   55 (237)
T ss_dssp             TTSSCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9984899999999998770798799983


No 192
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:540-757)
Probab=60.97  E-value=12  Score=17.78  Aligned_cols=40  Identities=20%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             6433889889982300078887489999999985247315987
Q gi|254780401|r   38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      +..+.+.++.-.|.-   |||||=++..|++.+...+-....+
T Consensus        44 ~~~~~~~~il~~G~~---GtGKt~lAr~l~~~~~~~~~~fv~v   83 (218)
T 1qvr_A           44 DPNRPIGSFLFLGPT---GVGKTELAKTLAATLFDTEEAMIRI   83 (218)
T ss_dssp             CSSSCSEEEEEBSCS---SSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred             CCCCCCEEEEEECCC---CCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             999986589987788---7337999999999962896406996


No 193
>>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} (A:1-166)
Probab=60.96  E-value=4  Score=21.06  Aligned_cols=31  Identities=10%  Similarity=0.177  Sum_probs=21.4

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3889889982300078887489999999985247
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      +.|-.++-.|-   -|||||-++.++|+.+....
T Consensus        22 ~~~~~iLl~Gp---pGtGKt~lA~~lA~~l~~~~   52 (166)
T 1a5t_A           22 RGHHALLIQAL---PGMGDDALIYALSRYLLCQQ   52 (166)
T ss_dssp             CCCSEEEEECC---TTSCHHHHHHHHHHHHTCSS
T ss_pred             CCCCEEEEECC---CCCCHHHHHHHHHHHHHCCC
T ss_conf             96725846899---99779999999999970879


No 194
>>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} (A:37-273)
Probab=60.92  E-value=8.1  Score=18.89  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||-++.-++-.....|.++..++
T Consensus        36 pGsGKT~l~~q~~~~~~~~g~~~lyi~   62 (237)
T 1u94_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (237)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             767789999999999855798699981


No 195
>>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} (A:369-546)
Probab=60.88  E-value=7.4  Score=19.17  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=23.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      -|+|||-+...|++.|.........+..
T Consensus        13 ~GsGKSTia~~La~~l~~~~~~~~~~~~   40 (178)
T 2gks_A           13 PCAGKSTIAEILATMLQARGRKVTLLDG   40 (178)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             5882759999999999866981999887


No 196
>>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} (A:1-202)
Probab=60.82  E-value=2.3  Score=22.78  Aligned_cols=27  Identities=22%  Similarity=0.022  Sum_probs=19.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||-....-+......|-+..+++
T Consensus        49 TGsGKT~~~~l~~~~~~~~~~~~l~l~   75 (202)
T 2p6r_A           49 TAAGKTLLAEMAMVREAIKGGKSLYVV   75 (202)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             986299999999999986199599992


No 197
>>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3} (A:)
Probab=60.38  E-value=6.9  Score=19.39  Aligned_cols=28  Identities=11%  Similarity=0.086  Sum_probs=25.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      =|+|||-++..++......|.++..+|-
T Consensus        30 ~g~GKT~~~~~~a~~~~~~g~~v~~i~~   57 (260)
T 3bs4_A           30 ASSRGKDILFYILSRKLKSDNLVGMFSI   57 (260)
T ss_dssp             GGGCHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999899999999999867993799980


No 198
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:255-525)
Probab=60.29  E-value=8.4  Score=18.77  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||-++.-++....+.|.++..+|
T Consensus        36 pGsGKT~l~~q~~~~~~~~g~~~lyis   62 (271)
T 1tf7_A           36 TGTGKTLLVSRFVENACANKERAILFA   62 (271)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             876699999999999986599439998


No 199
>>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, structural genomics, protein structure initiative; HET: NAD; 1.87A {Archaeoglobus fulgidus} (A:1-166)
Probab=60.07  E-value=10  Score=18.19  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  =+-.+|++.|.++|+.+.+++|.=..
T Consensus         5 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~   37 (166)
T 3ehe_A            5 VVTGGAG--FIGSHVVDKLSESNEIVVIDNLSSGN   37 (166)
T ss_dssp             EEETTTS--HHHHHHHHHHTTTSCEEEECCCSSCC
T ss_pred             EECCCCC--HHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             9877886--99999999998399889998689888


No 200
>>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=59.92  E-value=0.19  Score=30.49  Aligned_cols=29  Identities=14%  Similarity=0.201  Sum_probs=18.0

Q ss_pred             CCCCHHHHHHHHC-CCCCCEEEECCCCCCC
Q ss_conf             6520122566410-2457479971832234
Q gi|254780401|r  119 VTSDRKIGVQMLL-QEGVDIIIMDDGFHSA  147 (338)
Q Consensus       119 V~~~R~~~~~~~~-~~~~diiIlDDGfQh~  147 (338)
                      .+..=..++..+. +.+.+|++.|+..+..
T Consensus        50 lG~SG~sa~a~Ll~~~G~~V~v~D~~~~~~   79 (201)
T 1vp8_A           50 ASSYGDTAXKALEXAEGLEVVVVTYHTGFV   79 (201)
T ss_dssp             ECSSSHHHHHHHHHCTTCEEEEEECCTTSS
T ss_pred             EECCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             817866999999983598099995646878


No 201
>>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* (A:)
Probab=59.76  E-value=7.3  Score=19.22  Aligned_cols=30  Identities=17%  Similarity=0.080  Sum_probs=22.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      =|+|||-++..|++.+..........-+.|
T Consensus        11 ~GsGKTTla~~L~~~l~~~~~~~~~~~~~~   40 (205)
T 2ccj_A           11 EGSGKTTVINEVYHRLVKDYDVIMTREPGG   40 (205)
T ss_dssp             TTSCHHHHHHHHHHHHTTTSCEEEEESSTT
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             888599999999999966998899879999


No 202
>>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Bacteriophage T7} (A:24-296)
Probab=59.64  E-value=8.8  Score=18.62  Aligned_cols=30  Identities=20%  Similarity=0.068  Sum_probs=23.6

Q ss_pred             CCCCCCHHHHHHHHH-HHHCCCCEEEEEECC
Q ss_conf             788874899999999-852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKA-VIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~-l~~~g~~~~ilsRGY   84 (338)
                      .|+|||-++..++.. ....|.++..++=..
T Consensus        21 ~G~GKT~l~~~~~~~~~~~~g~~vl~~~~e~   51 (273)
T 1cr0_A           21 SGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   51 (273)
T ss_dssp             TTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEECCH
T ss_conf             9985999999999987774200202100101


No 203
>>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} (A:)
Probab=59.57  E-value=8.8  Score=18.62  Aligned_cols=28  Identities=18%  Similarity=0.069  Sum_probs=25.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      =|+|||-++.-++......|.++..++-
T Consensus        32 ~GsGKt~~~~~~~~~~~~~g~~~~~~~~   59 (247)
T 2dr3_A           32 PGTGKTIFSQQFLWNGLKMGEPGIYVAL   59 (247)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEECCCC
T ss_conf             9988999999999999870797510555


No 204
>>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303)
Probab=59.46  E-value=8.7  Score=18.67  Aligned_cols=111  Identities=18%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCCCC-CCCH
Q ss_conf             823000788--874899999999852473159876045787777558714567--88770421233220576346-5201
Q gi|254780401|r   49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVTIV-TSDR  123 (338)
Q Consensus        49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv~V-~~~R  123 (338)
                      ||=+|.||-  |=-..+..+++.....|+++.-+-+||.+-..+.+...+..+  .....|- ..|-..+++-.. ..++
T Consensus         4 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GG-tiLgtsR~~~~~~~~~~   82 (182)
T 1zxx_A            4 IGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSG-TFLYSARYPEFAEEEGQ   82 (182)
T ss_dssp             EEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCS-CTTCCCCCGGGTSHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCC-CCCCCCCCCCCCCHHHH
T ss_conf             99988578737799999999999997899899987306874689917799999876773377-40135777755555667


Q ss_pred             HHHHHHHCCCCCCEEEE---CCCCCCCCCC--CEEEEEEECC
Q ss_conf             22566410245747997---1832234412--3069999618
Q gi|254780401|r  124 KIGVQMLLQEGVDIIIM---DDGFHSADLQ--ADFSLIVVNS  160 (338)
Q Consensus       124 ~~~~~~~~~~~~diiIl---DDGfQh~~l~--rdl~Ivl~d~  160 (338)
                      .++++.+.+.+.|.+|.   |+-|+--..-  -++.++-+..
T Consensus        83 ~~~~~~l~~~~Id~LivIGGdGS~~~a~~L~~~gi~vIgIPk  124 (182)
T 1zxx_A           83 LAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIGLPG  124 (182)
T ss_dssp             HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf             778889987078889996797279999987542466443023


No 205
>>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} (A:)
Probab=59.45  E-value=12  Score=17.60  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=28.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             000788874899999999852473159876045787
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      +++||||  -+-.+|++.|.++|+.+.++.|.....
T Consensus         5 lVTGatG--fiG~~lv~~Ll~~g~~V~~~~r~~~~~   38 (330)
T 2c20_A            5 LICGGAG--YIGSHAVKKLVDEGLSVVVVDNLQTGH   38 (330)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSCC
T ss_pred             EECCCCC--HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             9888888--899999999997839899997888678


No 206
>>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} (A:109-229)
Probab=59.43  E-value=6  Score=19.80  Aligned_cols=29  Identities=21%  Similarity=0.198  Sum_probs=21.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             00078887489999999985247315987
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      +..||||=||+.-++-..+.+..-++.++
T Consensus         8 ~iagG~GiaP~~s~l~~~~~~~~~~v~l~   36 (121)
T 2pia_A            8 LVAGGIGITPMLSMARQLRAEGLRSFRLY   36 (121)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             99825777608999999987214772589


No 207
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:1-191)
Probab=59.36  E-value=4.5  Score=20.71  Aligned_cols=26  Identities=38%  Similarity=0.538  Sum_probs=19.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88998230007888748999999998524
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .++-.|.   -|||||-++.++|+.|...
T Consensus        60 ~~Ll~Gp---pG~GKT~~a~ala~~l~~~   85 (191)
T 1sxj_D           60 HMLFYGP---PGTGKTSTILALTKELYGP   85 (191)
T ss_dssp             CEEEECS---TTSSHHHHHHHHHHHHHHH
T ss_pred             EEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             3998898---9999899999999851455


No 208
>>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} (A:1-177)
Probab=59.23  E-value=4.5  Score=20.69  Aligned_cols=32  Identities=25%  Similarity=0.198  Sum_probs=22.8

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      --++..|-   -|||||-++.++|+.+.   .....++
T Consensus        40 ~giLL~GP---pGtGKT~la~alA~~~~---~~~~~~~   71 (177)
T 2qz4_A           40 KGALLLGP---PGCGKTLLAKAVATEAQ---VPFLAMA   71 (177)
T ss_dssp             CEEEEESC---TTSSHHHHHHHHHHHHT---CCEEEEE
T ss_pred             CCEEEECC---CCCCCCHHHHHHHHCCC---CCEEEEE
T ss_conf             84387579---99884215688751358---9739988


No 209
>>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} (A:)
Probab=59.20  E-value=12  Score=17.57  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||.  +=..|++.|.++|+.+..++|.-..
T Consensus         4 lItGatG~--iG~~l~~~L~~~g~~v~~~~r~~~~   36 (221)
T 3ew7_A            4 GIIGATGR--AGSRILEEAKNRGHEVTAIVRNAGK   36 (221)
T ss_dssp             EEETTTSH--HHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             99999848--9999999999785989999898677


No 210
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:231-503)
Probab=58.98  E-value=5.1  Score=20.34  Aligned_cols=29  Identities=14%  Similarity=-0.065  Sum_probs=23.1

Q ss_pred             CCCCCCHHHHHHHHH-HHHCCCCEEEEEEC
Q ss_conf             788874899999999-85247315987604
Q gi|254780401|r   55 GGTGKTPTALAIAKA-VIDKNLKPGFLSRG   83 (338)
Q Consensus        55 GGtGKTP~v~~l~~~-l~~~g~~~~ilsRG   83 (338)
                      -|+|||-++..++.. ....|.++..+|=.
T Consensus        21 ~g~GKT~l~~~~~~~~~~~~g~~vl~~~~E   50 (273)
T 1q57_A           21 SGMVMSTFVRQQALQWGTAMGKKVGLAMLE   50 (273)
T ss_dssp             SCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             424299999998875665137732334334


No 211
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277)
Probab=58.94  E-value=6.7  Score=19.47  Aligned_cols=28  Identities=18%  Similarity=0.120  Sum_probs=19.6

Q ss_pred             ECCCCCCHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf             078887489999999985247----3159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKN----LKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g----~~~~ils   81 (338)
                      .-|||||=+....+.++...+    .++.+++
T Consensus        23 ~~GsGKT~~~~~~~~~ll~~~~~~~~~il~v~   54 (195)
T 1uaa_A           23 GAGSGKTRVITNKIAHLIRGCGYQARHIAAVT   54 (195)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             ECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEC
T ss_conf             08447999999999999980898960499875


No 212
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1405-1641)
Probab=58.90  E-value=8.1  Score=18.89  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||-++.-++-.....|.++..++
T Consensus        36 pGsGKT~l~~q~~~~~~~~g~~~lyi~   62 (237)
T 3cmw_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (237)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCCCEEEEHHHHHHHCCCCCHHHHCC
T ss_conf             887737775876544404452454336


No 213
>>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} (A:1-185)
Probab=58.89  E-value=4.6  Score=20.66  Aligned_cols=32  Identities=25%  Similarity=0.220  Sum_probs=23.2

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             33889889982300078887489999999985247
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      .+.+-.++-.|-   -|||||.++.++|+.|....
T Consensus        42 ~~~~~~lLl~Gp---pG~GKt~la~~lA~~l~~~~   73 (185)
T 1njg_A           42 GRIHHAYLFSGT---RGVGKTSIARLLAKGLNCET   73 (185)
T ss_dssp             TCCCSEEEEECS---TTSCHHHHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEECC---CCCCHHHHHHHHHHHHCCCC
T ss_conf             998706988899---98768999999999846854


No 214
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1749-1985)
Probab=58.87  E-value=8.1  Score=18.89  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||-++.-++-.....|.++..++
T Consensus        36 pGsGKT~l~~q~~~~~~~~g~~~lyi~   62 (237)
T 3cmu_A           36 ESSGKTTLTLQVIAAAQREGKTCAFID   62 (237)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCCCCCCEEEEHHHCCCCCCCEEEE
T ss_conf             766667301011075528876404663


No 215
>>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} (A:)
Probab=58.79  E-value=13  Score=17.52  Aligned_cols=31  Identities=13%  Similarity=0.198  Sum_probs=25.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +.+||||  -+=.+|++.|.++|+.+.++.|.-
T Consensus         5 lITGatG--fiG~~l~~~Ll~~g~~v~~~~~~~   35 (347)
T 1orr_A            5 LITGGCG--FLGSNLASFALSQGIDLIVFDNLS   35 (347)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9918874--899999999997839899997988


No 216
>>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} (A:24-137,A:224-347,A:402-437)
Probab=58.79  E-value=8.4  Score=18.80  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=23.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||-+...++..+...|..+.|+-
T Consensus        39 TGsGKT~~l~~li~~l~~~~~~~~iiD   65 (274)
T 1e9r_A           39 TGTGKSVLLRELAYTGLLRGDRMVIVD   65 (274)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             999889999999999985899889997


No 217
>>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* (A:77-305)
Probab=58.66  E-value=11  Score=18.03  Aligned_cols=32  Identities=13%  Similarity=0.079  Sum_probs=23.6

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             43388988998230007888748999999998524
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .......+|..|.   ||||||-+...|++.+...
T Consensus        46 ~~~~~~~~il~Gp---~gtGKst~~~~i~~~~~~~   77 (229)
T 2v9p_A           46 GIPKKNCLAFIGP---PNTGKSMLCNSLIHFLGGS   77 (229)
T ss_dssp             TCTTCSEEEEECS---SSSSHHHHHHHHHHHHTCE
T ss_pred             CCCCCEEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             8997418999879---9988899999999983887


No 218
>>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} (A:88-282)
Probab=58.48  E-value=7.6  Score=19.11  Aligned_cols=28  Identities=11%  Similarity=0.112  Sum_probs=18.8

Q ss_pred             ECCCCCCHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf             07888748999999998524-73159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDK-NLKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~-g~~~~ils   81 (338)
                      .=|+|||...+.++..+... +.++.++.
T Consensus        49 ~tG~GKT~~~~~~~~~~~~~~~~~~~ii~   77 (195)
T 1rif_A           49 PTSAGRSLIQALLARYYLENYEGKILIIV   77 (195)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred             ECCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             40367007999999986523673599997


No 219
>>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} (A:392-573)
Probab=58.12  E-value=7.4  Score=19.17  Aligned_cols=31  Identities=19%  Similarity=0.106  Sum_probs=25.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             0788874899999999852473159876045
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      .-|||||-++..|++.|....+...-+.++.
T Consensus        13 ~~GsGKsTla~~La~~l~~~~~~~~~~~~~~   43 (182)
T 1m8p_A           13 YMNSGKDAIARALQVTLNQQGGRSVSLLLGD   43 (182)
T ss_dssp             STTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf             8998875999999999997479638982689


No 220
>>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=58.11  E-value=6.7  Score=19.47  Aligned_cols=32  Identities=22%  Similarity=0.105  Sum_probs=21.9

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             88998230007888748999999998524731598
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF   79 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i   79 (338)
                      -|+..|+.   |+|||-++..|++.|...+..+..
T Consensus         7 iI~i~G~~---GsGKsTla~~L~~~l~~~~~~~~~   38 (216)
T 3tmk_A            7 LILIEGLD---RTGKTTQCNILYKKLQPNCKLLKF   38 (216)
T ss_dssp             EEEEEECS---SSSHHHHHHHHHHHHCSSEEEEES
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             89998998---887999999999999709889997


No 221
>>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} (B:48-269)
Probab=58.07  E-value=13  Score=17.44  Aligned_cols=12  Identities=0%  Similarity=0.027  Sum_probs=6.0

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             535789998874
Q gi|254780401|r  232 ADTEKFFTTVRQ  243 (338)
Q Consensus       232 a~P~~F~~~L~~  243 (338)
                      +.|++|.+.+.+
T Consensus       144 ~Tp~~l~~~l~~  155 (222)
T 3kx2_B          144 MTDGMLLREAME  155 (222)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             ECCHHHHHHHHH
T ss_conf             733899999864


No 222
>>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305)
Probab=57.46  E-value=12  Score=17.74  Aligned_cols=111  Identities=17%  Similarity=0.285  Sum_probs=64.9

Q ss_pred             ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCCCC-CCCH
Q ss_conf             823000788--874899999999852473159876045787777558714567--88770421233220576346-5201
Q gi|254780401|r   49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVTIV-TSDR  123 (338)
Q Consensus        49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv~V-~~~R  123 (338)
                      ||=+|.||-  |=-..+..+++.....|+++.-+-.||.+-..+.+..-+..+  ....-|- ..|-..+++-.. ...+
T Consensus         4 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~ev~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GG-t~LgtsR~~~~~~~~~~   82 (186)
T 3pfk_A            4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGG-TILYTARCPEFKTEEGQ   82 (186)
T ss_dssp             EEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCS-CTTCCCCCGGGSSHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHCCC-CHHCCCCCCCCCCCHHH
T ss_conf             99987688768999999999999997799999984156875679951599899987986485-11045888865431015


Q ss_pred             HHHHHHHCCCCCCEEEE---CCCCCCCC-CC-CEEEEEEECC
Q ss_conf             22566410245747997---18322344-12-3069999618
Q gi|254780401|r  124 KIGVQMLLQEGVDIIIM---DDGFHSAD-LQ-ADFSLIVVNS  160 (338)
Q Consensus       124 ~~~~~~~~~~~~diiIl---DDGfQh~~-l~-rdl~Ivl~d~  160 (338)
                      .++++.+.+.+.|.+|.   ||-++--. |+ ..+.++.+..
T Consensus        83 ~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vigiPk  124 (186)
T 3pfk_A           83 KKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGVPG  124 (186)
T ss_dssp             HHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB
T ss_pred             HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             579999998367659994584799999998733675553111


No 223
>>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, structural genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} (A:1-198)
Probab=57.36  E-value=13  Score=17.36  Aligned_cols=31  Identities=10%  Similarity=0.225  Sum_probs=24.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             007888748999999998524731598760457
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      .+||||  -+=.+|++.|.++|+.+.++.|-..
T Consensus        32 VtGgtG--fIG~~lv~~L~~~g~~V~~~~~~~~   62 (198)
T 2b69_A           32 ITGGAG--FVGSHLTDKLXXDGHEVTVVDNFFT   62 (198)
T ss_dssp             EETTTS--HHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             EECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             978972--8999999999978698999968876


No 224
>>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii} (A:1-187)
Probab=57.26  E-value=5.6  Score=20.04  Aligned_cols=24  Identities=33%  Similarity=0.140  Sum_probs=17.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .|||||-++.++|+.+.   .....++
T Consensus        60 pGtGKT~~a~ala~~~~---~~~~~~~   83 (187)
T 3h4m_A           60 PGTGKTLLAKAVATETN---ATFIRVV   83 (187)
T ss_dssp             SSSSHHHHHHHHHHHTT---CEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf             99980199999999829---9779998


No 225
>>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} (A:1-196)
Probab=57.25  E-value=5.1  Score=20.29  Aligned_cols=29  Identities=28%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88988998230007888748999999998524
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .+..++-.|.-   |||||=++.++|+.+...
T Consensus        63 ~~~~iLl~Gpp---GtGKT~la~aia~~l~~~   91 (196)
T 1d2n_A           63 PLVSVLLEGPP---HSGKTALAAKIAEESNFP   91 (196)
T ss_dssp             SEEEEEEECST---TSSHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCC---CCCHHHHHHHHHHHCCCC
T ss_conf             98269988949---998899999998743677


No 226
>>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthesis, methyltransferase, transferase; 2.3A {Escherichia coli} (A:)
Probab=56.55  E-value=14  Score=17.27  Aligned_cols=33  Identities=6%  Similarity=0.047  Sum_probs=27.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  -+=.+|++.|.++|+.+.++.|.-..
T Consensus         4 LVtGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~~   36 (345)
T 2bll_A            4 LILGVNG--FIGNHLTERLLREDHYEVYGLDIGSD   36 (345)
T ss_dssp             EEETCSS--HHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             9989886--89999999999779988999968972


No 227
>>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} (A:1-210)
Probab=56.55  E-value=4.6  Score=20.62  Aligned_cols=34  Identities=35%  Similarity=0.271  Sum_probs=22.9

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .+.-++--|-   -|||||-++.++|+.+.   .....++
T Consensus        72 ~~~giLL~Gp---pGtGKT~la~a~A~~~~---~~~~~~~  105 (210)
T 1iy2_A           72 IPKGVLLVGP---PGVGKTHLARAVAGEAR---VPFITAS  105 (210)
T ss_dssp             CCCEEEEECC---TTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred             CCCCEEEECC---CCCCCHHHHHHHHHHCC---CCEEEEE
T ss_conf             9980377579---99983389999998749---9769988


No 228
>>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} (A:)
Probab=56.53  E-value=14  Score=17.27  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +.+||||..  =.+|++.|.++|+.+.+++|.-.
T Consensus         4 lItGatG~i--G~~l~~~L~~~g~~V~~~~r~~~   35 (224)
T 3h2s_A            4 AVLGATGRA--GSAIVAEARRRGHEVLAVVRDPQ   35 (224)
T ss_dssp             EEETTTSHH--HHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEECCHH
T ss_conf             999988579--99999999978698999988857


No 229
>>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} (A:)
Probab=56.52  E-value=14  Score=17.27  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=30.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf             0007888748999999998524731598760457877775
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRIS   91 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~   91 (338)
                      |.+||||  -+=-+|++.|.++|+.|..+.|.-.......
T Consensus         6 LItGatG--fiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~   43 (286)
T 3gpi_A            6 ILIAGCG--DLGLELARRLTAQGHEVTGLRRSAQPMPAGV   43 (286)
T ss_dssp             EEEECCS--HHHHHHHHHHHHTTCCEEEEECTTSCCCTTC
T ss_pred             EEEECCC--HHHHHHHHHHHHCCCEEEEEECCHHHCCCCC
T ss_conf             9998921--9999999999978598999978712260678


No 230
>>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} (A:1-365)
Probab=56.50  E-value=14  Score=17.26  Aligned_cols=37  Identities=41%  Similarity=0.403  Sum_probs=25.7

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             4338898899823000788874899999999852473159876
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +..++--++-.|-=   |||||-++..||+.|..   ...+++
T Consensus        59 ~~~~~~~iLl~GPp---GtGKT~la~alA~~l~~---~~~~~~   95 (365)
T 2c9o_A           59 KKMAGRAVLLAGPP---GTGKTALALAIAQELGS---KVPFCP   95 (365)
T ss_dssp             TCCTTCEEEEECCT---TSSHHHHHHHHHHHHCT---TSCEEE
T ss_pred             CCCCCCEEEEECCC---CCCHHHHHHHHHHHHCC---CCCCCC
T ss_conf             98668779998999---98899999999998489---999767


No 231
>>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} (A:365-552)
Probab=56.26  E-value=5.8  Score=19.94  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=28.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8899823000788874899999999852473159876045
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      -|+..|..   |+|||-++..|++.|....+......+..
T Consensus         7 ~I~i~G~~---GsGKTTla~~La~~l~~~~~~~~~~~~~~   43 (188)
T 3cr8_A            7 TVFFTGLS---GAGKSTLARALAARLMEMGGRCVTLLDGD   43 (188)
T ss_dssp             EEEEEESS---CHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf             99997888---88772899999999712468727984346


No 232
>>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:360-386,A:602-759)
Probab=56.20  E-value=14  Score=17.23  Aligned_cols=27  Identities=11%  Similarity=0.074  Sum_probs=19.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .-||--+-|-.-.+.+++.|.++.++|
T Consensus        22 ~~~~~~t~v~~~I~~l~~~GI~~~m~T   48 (185)
T 2zxe_A           22 DKTGTLAAVPDAVGKCRSAGIKVIMVT   48 (185)
T ss_dssp             CCCCCCTTHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf             054202679999999997797799986


No 233
>>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:179-444)
Probab=56.15  E-value=11  Score=17.99  Aligned_cols=28  Identities=36%  Similarity=0.439  Sum_probs=22.0

Q ss_pred             CCCCCCHHHHHHH-HHHHHCCCCEEEEEE
Q ss_conf             7888748999999-998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIA-KAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~-~~l~~~g~~~~ilsR   82 (338)
                      =|+|||-++.-++ ......|..+..+|-
T Consensus        31 ~G~GKTt~~~q~~~~~~~~~g~~vl~~~~   59 (266)
T 2q6t_A           31 PAMGKTAFALTIAQNAALKEGVGVGIYSL   59 (266)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             55322079999898898736994799715


No 234
>>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens} (A:1-250,A:340-357)
Probab=56.02  E-value=4.5  Score=20.68  Aligned_cols=27  Identities=33%  Similarity=0.341  Sum_probs=16.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             898899823000788874899999999852
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      +-.++..|--   |||||=++.++|+.+..
T Consensus       117 ~~~iLL~GPP---GtGKT~la~alA~~l~~  143 (268)
T 3d8b_A          117 PKGILLFGPP---GTGKTLIGKCIASQSGA  143 (268)
T ss_dssp             CSEEEEESST---TSSHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCC---CCCHHHHHHHHHCCCCC
T ss_conf             8756887899---99866999998523389


No 235
>>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:1-26,A:113-258)
Probab=55.86  E-value=14  Score=17.19  Aligned_cols=42  Identities=21%  Similarity=0.214  Sum_probs=32.7

Q ss_pred             CCCEEEECC-----EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             898899823-----000788874899999999852473159876045
Q gi|254780401|r   43 PIPVICVGG-----FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        43 ~~pVI~VGN-----itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +..|.|-|-     +-..||---|=+..+.+.|+++|++++|+|.+-
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~PGv~e~L~~L~~~G~~v~ivTn~~   51 (172)
T 3iru_A            5 KANVFCAGPVEALILDWAGTTIIPGWKEVFDKLIAQGIKVGGNTGYG   51 (172)
T ss_dssp             CCCCCCCCCCCEEEEESBTTTBCTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf             45776679862999828897675757999999985236089980785


No 236
>>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} (A:)
Probab=55.71  E-value=14  Score=17.18  Aligned_cols=33  Identities=18%  Similarity=0.146  Sum_probs=26.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  -+=.+|++.|.++|+++.++.|.-..
T Consensus        25 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~   57 (333)
T 2q1w_A           25 FITGICG--QIGSHIAELLLERGDKVVGIDNFATG   57 (333)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9927888--89999999999782989999799855


No 237
>>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} (B:32-62,B:311-519)
Probab=55.68  E-value=13  Score=17.42  Aligned_cols=34  Identities=21%  Similarity=0.103  Sum_probs=20.0

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             1686389874155357899988740100001221
Q gi|254780401|r  220 LSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYS  253 (338)
Q Consensus       220 l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~  253 (338)
                      +.|+++.++.+-...-.+-+.|+++|..++....
T Consensus        79 L~Gkrv~I~g~~~~~~~l~~~L~ElGm~vv~~~~  112 (240)
T 1qgu_B           79 LHGKKFGLYGDPDFVMGLTRFLLELGCEPTVILS  112 (240)
T ss_dssp             HTTCEEEEESCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             0797799989828899999999987995569863


No 238
>>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} (B:)
Probab=55.51  E-value=6.1  Score=19.78  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=23.0

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .|.-|+-.|-   =|||||=++.++|..+..   ....++
T Consensus        31 ~p~giLl~Gp---pGtGKT~la~ala~e~~~---~~~~i~   64 (253)
T 2p5t_B           31 QPIAILLGGQ---SGAGKTTIHRIKQKEFQG---NIVIID   64 (253)
T ss_dssp             SCEEEEEESC---GGGTTHHHHHHHHHHTTT---CCEEEC
T ss_pred             CCEEEEEECC---CCCCHHHHHHHHHHHHCC---CEEEEE
T ss_conf             9879999899---998999999999876467---639998


No 239
>>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A (A:178-286)
Probab=55.49  E-value=14  Score=17.15  Aligned_cols=94  Identities=7%  Similarity=0.025  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH-HHHHCCCCCCCCHHHHCCEEEEEE-EEEE
Q ss_conf             78999887401000012214332348989999999975647987998546-634382333441112205178876-9895
Q gi|254780401|r  235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK-DAMRLHKRPGRAEEIFAKSMVIEV-DIVF  312 (338)
Q Consensus       235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK-D~VKL~~~~~~~~~l~~~~~~l~i-~~~~  312 (338)
                      ..|-...+.+|++....+....+..-|.+++.++.+..++++...|-+|- ---|.-+.  ...+....+.+++. .-..
T Consensus        10 ~af~Yl~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~i~~e~~~~~~~~~~--ia~~~~~~~~~l~~l~~~~   87 (109)
T 3gi1_A           10 TAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHA--IAKSTGAKVKTLSPLEAAP   87 (109)
T ss_dssp             SCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHH--HHHTTTCEEEECCCSCSCC
T ss_pred             CHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH--HHHHHCCCEEEECCCCCCC
T ss_conf             05678999769827632566876789989999999999975998899958899399999--9998299878747776788


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             787899999999999986
Q gi|254780401|r  313 ENPDDLTNLVEMTVVSFA  330 (338)
Q Consensus       313 ~~~~~l~~~l~~~i~~~~  330 (338)
                      .+.....+++++.+..+.
T Consensus        88 ~~~~~Y~~~m~~n~~~l~  105 (109)
T 3gi1_A           88 SGNKTYLENLRANLEVLY  105 (109)
T ss_dssp             SSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             886659999999999999


No 240
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286)
Probab=54.86  E-value=12  Score=17.69  Aligned_cols=28  Identities=14%  Similarity=0.103  Sum_probs=18.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf             078887489999999985247----3159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKN----LKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g----~~~~ils   81 (338)
                      ..|||||=+....+..+...+    .++.+++
T Consensus        32 ~tGsGKT~~~~~~i~~~l~~~~~~~~~il~i~   63 (200)
T 1pjr_A           32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT   63 (200)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred             ECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             38427999999999999980998942299993


No 241
>>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} (A:)
Probab=54.82  E-value=15  Score=17.08  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             0007888748999999998524731598760457877
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS   88 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~   88 (338)
                      +.+||||.  +=.+|++.|.++|+++.+++|.-....
T Consensus         4 lItGatG~--iG~~lv~~L~~~g~~v~~~~r~~~~~~   38 (219)
T 3dqp_A            4 FIVGSTGR--VGKSLLKSLSTTDYQIYAGARKVEQVP   38 (219)
T ss_dssp             EEESTTSH--HHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             99999988--999999999978398999989878804


No 242
>>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} (A:)
Probab=54.63  E-value=13  Score=17.32  Aligned_cols=33  Identities=21%  Similarity=0.469  Sum_probs=26.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||..  =..|++.|.++|+.+.+++|....
T Consensus        22 lItGatG~i--G~~l~~~l~~~g~~v~~~~r~~~~   54 (242)
T 2bka_A           22 FILGASGET--GRVLLKEILEQGLFSKVTLIGRRK   54 (242)
T ss_dssp             EEECTTSHH--HHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCCCEEEEEECCH
T ss_conf             998998689--999999999779972699853673


No 243
>>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A (A:1-159,A:317-397)
Probab=54.39  E-value=11  Score=17.83  Aligned_cols=27  Identities=33%  Similarity=0.496  Sum_probs=21.6

Q ss_pred             CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf             788874899-999999852473159876
Q gi|254780401|r   55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v-~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||=.+ ..+++.+...+.++.|+.
T Consensus        30 TGsGKT~~~l~~i~~~~~~~~~rvLiLa   57 (240)
T 2z83_A           30 PGSGKTRKILPQIIKDAIQQRLRTAVLA   57 (240)
T ss_dssp             TTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEEH
T ss_conf             9985889999999998772798399986


No 244
>>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A (A:)
Probab=54.34  E-value=8.5  Score=18.73  Aligned_cols=40  Identities=18%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHH-C--CCCEEEEEECCCC
Q ss_conf             8898899823000788874899999999852-4--7315987604578
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVID-K--NLKPGFLSRGYGR   86 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~--g~~~~ilsRGYg~   86 (338)
                      ..|-.||.||+     +.+|++.++.+.+.+ +  +-++-|-|.|=..
T Consensus         5 ~~ILFVC~gN~-----cRS~mAEal~~~~~~~~~l~~~~~v~SAG~~~   47 (163)
T 1u2p_A            5 LHVTFVCTGNI-----CRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGN   47 (163)
T ss_dssp             EEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCTTTEEEEEEESSC
T ss_pred             CEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             87999818848-----79999999999999866888707884377666


No 245
>>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} (A:1-272)
Probab=54.25  E-value=5.3  Score=20.19  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=24.0

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             4338898899823000788874899999999852473159876
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..++|--++-.|=   =|||||=++.+||+.+.   .....++
T Consensus        68 ~~~~~~giLL~GP---PGtGKT~lakalA~~~~---~~~~~~~  104 (272)
T 1um8_A           68 VELSKSNILLIGP---TGSGKTLMAQTLAKHLD---IPIAISD  104 (272)
T ss_dssp             TTCCCCCEEEECC---TTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred             CCCCCCCEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEE
T ss_conf             5678754365389---98757999999985254---7755520


No 246
>>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-140)
Probab=54.13  E-value=5.8  Score=19.92  Aligned_cols=22  Identities=14%  Similarity=-0.043  Sum_probs=17.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7888748999999998524731
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      -|||||-++.++|+.+......
T Consensus        27 pG~GKT~la~~ia~~~~~~~~~   48 (140)
T 2gno_A           27 DLSYPREVSLELPEYVEKFPPK   48 (140)
T ss_dssp             SSSHHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCC
T ss_conf             9988799999999987344677


No 247
>>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} (A:)
Probab=54.05  E-value=5.9  Score=19.85  Aligned_cols=27  Identities=15%  Similarity=0.137  Sum_probs=18.7

Q ss_pred             CCCCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             643388988998230007888748999999
Q gi|254780401|r   38 QRLHAPIPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      ...+.++.|+.||+   +|+|||-++..+.
T Consensus        20 ~~~~~~~Ki~ivG~---~~vGKTsli~rl~   46 (198)
T 1f6b_A           20 GLYKKTGKLVFLGL---DNAGKTTLLHMLK   46 (198)
T ss_dssp             TCTTCCEEEEEEEE---TTSSHHHHHHHHS
T ss_pred             CCCCCCCEEEEECC---CCCCHHHHHHHHH
T ss_conf             15666647999999---9998899999995


No 248
>>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} (B:1-233)
Probab=54.04  E-value=9.3  Score=18.47  Aligned_cols=38  Identities=24%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             89982300078887489999999985247315987604578
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      |+.+|--   |+|||-++..|++.|.-..+....+.+...+
T Consensus        55 I~i~G~~---GsGKTTia~~La~~l~~~~i~~d~~~~~~~~   92 (233)
T 1x6v_B           55 VWLTGLS---GAGKTTVSMALEEYLVCHGIPCYTLDGDNIR   92 (233)
T ss_dssp             EEEECST---TSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             9998999---9989999999999966036897102589999


No 249
>>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} (A:)
Probab=53.84  E-value=15  Score=16.97  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  -+=..|++.|.++|+.+.+++|.-..
T Consensus         7 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~   39 (206)
T 1hdo_A            7 AIFGATG--QTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             EEESTTS--HHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             9999998--89999999999786989999848254


No 250
>>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A (A:1-183,A:302-322)
Probab=53.58  E-value=6.1  Score=19.79  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             98899823000788874899999999852
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      --++-.|--   |||||-++.++|+.+..
T Consensus        52 ~giLl~GPp---GtGKT~lakaiA~~l~~   77 (204)
T 3eie_A           52 SGILLYGPP---GTGKSYLAKAVATEANS   77 (204)
T ss_dssp             CEEEEECSS---SSCHHHHHHHHHHHHTC
T ss_pred             CCEEEECCC---CCCHHHHHHHHHHHCCC
T ss_conf             805887999---99802898988876289


No 251
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:1-168)
Probab=53.51  E-value=6.9  Score=19.40  Aligned_cols=30  Identities=33%  Similarity=0.571  Sum_probs=21.5

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             889982300078887489999999985247315
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      +++..|.   -|||||.++..+++.+.......
T Consensus        48 ~~Ll~Gp---pG~GKT~~a~~ia~~~~~~~~~~   77 (168)
T 1iqp_A           48 HLLFAGP---PGVGKTTAALALARELFGENWRH   77 (168)
T ss_dssp             EEEEESC---TTSSHHHHHHHHHHHHHGGGHHH
T ss_pred             EEEEECC---CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             7988897---99999999999999976402477


No 252
>>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* (A:)
Probab=53.32  E-value=15  Score=16.92  Aligned_cols=32  Identities=19%  Similarity=0.349  Sum_probs=26.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      |.+||||  =+=.+|++.|.++|+.+.++.|.-.
T Consensus        25 LVTGgtG--fIG~~lv~~L~~~g~~v~~~~~~~~   56 (344)
T 2gn4_A           25 LITGGTG--SFGKCFVRKVLDTTNAKKIIVYSRD   56 (344)
T ss_dssp             EEETTTS--HHHHHHHHHHHHHCCCSEEEEEESC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             9988888--9999999999965998699997087


No 253
>>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} (A:)
Probab=53.29  E-value=14  Score=17.10  Aligned_cols=33  Identities=15%  Similarity=-0.003  Sum_probs=26.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|.-..
T Consensus        33 LItGatG--fiG~~lv~~L~~~g~~v~~~~~~~~~   65 (379)
T 2c5a_A           33 SITGAGG--FIASHIARRLKHEGHYVIASDWKKNE   65 (379)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9978888--89999999999782989999689852


No 254
>>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} (A:167-319)
Probab=53.16  E-value=5.4  Score=20.17  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=17.8

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             0788874899999999852473159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -+|||||-+.-.+++.+   +.++.+.+
T Consensus        34 ~~GTGKT~~l~~~~~~~---~~~vl~~A   58 (153)
T 2zpa_A           34 ARGRGKSALAGQLISRI---AGRAIVTA   58 (153)
T ss_dssp             CTTSSHHHHHHHHHHHS---SSCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHC---CCCEEEEC
T ss_conf             66786899999999840---79889989


No 255
>>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} (A:)
Probab=53.01  E-value=16  Score=16.88  Aligned_cols=32  Identities=19%  Similarity=0.248  Sum_probs=26.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +.+||||-.  =..+++.|.++|+.|.+++|.-.
T Consensus         8 lVtGatG~i--G~~lv~~Ll~~g~~V~~~~r~~~   39 (321)
T 3c1o_A            8 IIYGGTGYI--GKFMVRASLSFSHPTFIYARPLT   39 (321)
T ss_dssp             EEETTTSTT--HHHHHHHHHHTTCCEEEEECCCC
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCCEEEEECCCC
T ss_conf             998999789--99999999968994899988886


No 256
>>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} (A:)
Probab=52.82  E-value=5.8  Score=19.93  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=24.3

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8899823000788874899999999852473159876045
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      -|.-.|++   |+|||-+|..+++.|.-   +-.|-|--|
T Consensus        35 ii~L~G~l---GAGKTtlvr~l~~~lg~---~~~V~SPTf   68 (158)
T 1htw_A           35 MVYLNGDL---GAGKTTLTRGMLQGIGH---QGNVKSPTY   68 (158)
T ss_dssp             EEEEECST---TSSHHHHHHHHHHHTTC---CSCCCCCTT
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHCCC---CCCCCCCCC
T ss_conf             99998787---68999999999997687---787779950


No 257
>>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:146-383)
Probab=52.37  E-value=16  Score=16.82  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=18.0

Q ss_pred             CCCCCCHHHHHHHHHHH--HCCCCEEEEE
Q ss_conf             78887489999999985--2473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVI--DKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~--~~g~~~~ils   81 (338)
                      =|+|||=++..++-.+.  +.|.++.+++
T Consensus        42 tG~GKT~~~~~~~~~~~~~~~~~~vliv~   70 (238)
T 3cpe_A           42 RQLGKTTVVAIFLAHFVCFNKDKAVGILA   70 (238)
T ss_dssp             SSSCHHHHHHHHHHHHHHTSSSCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             98878999999999999849997699990


No 258
>>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* (A:)
Probab=52.31  E-value=16  Score=16.81  Aligned_cols=67  Identities=15%  Similarity=0.062  Sum_probs=37.5

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECHHHHHH
Q ss_conf             86389874155357899988740100-0012214332348989999999975647987-9985466343
Q gi|254780401|r  222 GKKVLAFSGIADTEKFFTTVRQLGAL-IEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI-LVTTAKDAMR  288 (338)
Q Consensus       222 ~k~v~afsGIa~P~~F~~~L~~~g~~-i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTTEKD~VK  288 (338)
                      +....-+.-+.|=.+....+-+.+-. ........+...++..|+.+++.++...... ...+..++-+
T Consensus       189 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~  257 (346)
T 3i6i_A          189 GNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLA  257 (346)
T ss_dssp             SCCCEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHH
T ss_pred             CCCEEEECCHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHH
T ss_conf             985388505999999999996290331937998489887749999999999989988558789999999


No 259
>>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} (A:1-271)
Probab=52.13  E-value=12  Score=17.56  Aligned_cols=43  Identities=7%  Similarity=0.151  Sum_probs=18.5

Q ss_pred             CCCHHHHHHHHHHHCCCC--CCCCCCCCCCCC----CHHHHHHHHHHHH
Q ss_conf             553578999887401000--012214332348----9899999999756
Q gi|254780401|r  231 IADTEKFFTTVRQLGALI--EQCYSFGDHAHL----SDKKIAYLLDQAQ  273 (338)
Q Consensus       231 Ia~P~~F~~~L~~~g~~i--~~~~~fpDHh~y----s~~dl~~i~~~a~  273 (338)
                      ||.|.+....+++....+  ++.+.+.+....    -..++..|.+...
T Consensus       184 V~TP~rl~~~~~~~~~~l~~~~~lVlDEaD~ll~~~f~~~~~~Il~~l~  232 (271)
T 2db3_A          184 IATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT  232 (271)
T ss_dssp             EECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTT
T ss_pred             EECCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCHHHHHHHHHHHH
T ss_conf             9678644332111332225554999989132267421145999999843


No 260
>>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} (A:1-188)
Probab=51.87  E-value=6.1  Score=19.77  Aligned_cols=33  Identities=27%  Similarity=0.184  Sum_probs=22.0

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +--|+..|=   =|||||-++.++|..+.   .....++
T Consensus        54 ~~giLl~GP---pGtGKT~la~aiA~~l~---~~~~~~~   86 (188)
T 3b9p_A           54 AKGLLLFGP---PGNGKTLLARAVATECS---ATFLNIS   86 (188)
T ss_dssp             CSEEEEESS---SSSCHHHHHHHHHHHTT---CEEEEEE
T ss_pred             CCEEEEECC---CCCCCCHHHHHHCCCCC---CCCCCCC
T ss_conf             834787789---99985325441012556---4102033


No 261
>>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} (A:)
Probab=51.85  E-value=4.6  Score=20.64  Aligned_cols=21  Identities=19%  Similarity=0.168  Sum_probs=17.5

Q ss_pred             CCCCCHHHHHHHHHHHHCCCC
Q ss_conf             888748999999998524731
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~   76 (338)
                      |||||-++..+++.|....+.
T Consensus        15 GtGKT~~a~a~a~~l~~l~~~   35 (199)
T 2r2a_A           15 GSGKTLKXVSXXANDEXFKPD   35 (199)
T ss_dssp             TSSHHHHHHHHHHHCGGGSCC
T ss_pred             CCHHHHHHHHHHHHHCCCCCC
T ss_conf             973999999999997767776


No 262
>>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} (A:)
Probab=51.63  E-value=16  Score=16.74  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=72.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf             89889982300078887489999999985247315987604578777755871456788770421233220576346520
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD  122 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~  122 (338)
                      |.-+|.+|+=.-||-|     +.++++|..+|++|.+.-.+-..+++             +                   
T Consensus       133 ~~V~vl~G~gnnGgdg-----l~~AR~L~~~G~~V~v~~~~~~~~~~-------------~-------------------  175 (306)
T 3d3j_A          133 PTVALLCGPHVKGAQG-----ISCGRHLANHDVQVILFLPNFVKMLE-------------S-------------------  175 (306)
T ss_dssp             CEEEEEECSSHHHHHH-----HHHHHHHHHTTCEEEEECCCCSSCCH-------------H-------------------
T ss_pred             CEEEEEECCCCCCHHH-----HHHHHHHHHCCCEEEEEEECCCCCCH-------------H-------------------
T ss_conf             9799998999872999-----99999999779838999727866798-------------9-------------------


Q ss_pred             HHHHHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH-HHHH
Q ss_conf             12256641-024574799718322344123069999618433566553761365210025566514544204412-4577
Q gi|254780401|r  123 RKIGVQML-LQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK-NVIS  200 (338)
Q Consensus       123 R~~~~~~~-~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~-~~~~  200 (338)
                         ...++ .-......+..+.-.-.-  ...+ ++||+.-|+|..+-.+.++.++=+. .+++..+-++.-... ....
T Consensus       176 ---~~~~~~~~~~~~~~~~~~~~~~~~--~~~d-liIDal~G~g~~r~~~~~~~~~li~-~~N~~~~~vlsiDiPSGl~~  248 (306)
T 3d3j_A          176 ---ITNELSLFSKTQGQQVSSLKDLPT--SPVD-LVINCLDCPENVFLRDQPWYKAAVA-WANQNRAPVLSIDPPVHEVE  248 (306)
T ss_dssp             ---HHHHHHHHHTSSCEEESCSTTSCS--SCCS-EEEEECCCTTCGGGGGCHHHHHHHH-HHHHSCCCEEEESCCCC---
T ss_pred             ---HHHHHHHHHHCCCCEECCHHHHCC--CCCC-EEEECCCCCCCCCCCCCHHHHHHHH-HHHHCCCCEEEEECCCCCCC
T ss_conf             ---999999998638965342355345--7775-8998424366677765199999999-99856997799858998887


Q ss_pred             HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             6313501112222013211168638987415535789998
Q gi|254780401|r  201 SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT  240 (338)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~  240 (338)
                      ...+...-.+-.-++.-....|+  +.++.||=|+.+++.
T Consensus       249 ~~v~a~~tvt~g~pK~gl~~~G~--~~l~diGip~~~~~~  286 (306)
T 3d3j_A          249 QGIDAKWSLALGLPLPLGEHAGR--IYLCDIGIPQQVFQE  286 (306)
T ss_dssp             --CCCSEEEEESSCCCCCGGGCE--EEEECCCCCHHHHHH
T ss_pred             CCCCCCEEEECCCCCCCHHHCCE--EEEECCCCCHHHHHH
T ss_conf             76268878971873573655882--999768899899997


No 263
>>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} (A:303-660)
Probab=51.43  E-value=16  Score=16.71  Aligned_cols=32  Identities=6%  Similarity=0.051  Sum_probs=26.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      |.+||||  -+=.+|++.|.++|+.+.++.|.-.
T Consensus        17 lVtGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~   48 (358)
T 1z7e_A           17 LILGVNG--FIGNHLTERLLREDHYEVYGLDIGS   48 (358)
T ss_dssp             EEETTTS--HHHHHHHHHHHHSSSEEEEEEESCC
T ss_pred             EECCCCC--CCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             8678997--6389999999968998899996898


No 264
>>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} (A:)
Probab=51.14  E-value=6.9  Score=19.41  Aligned_cols=93  Identities=19%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             CCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--------CCCCCCHHH
Q ss_conf             78887489-999999985247315987604578777755871456788770421233220576--------346520122
Q gi|254780401|r   55 GGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--------TIVTSDRKI  125 (338)
Q Consensus        55 GGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--------v~V~~~R~~  125 (338)
                      =|||||-. ++-+...+......+-            ...+.+....+.++-+|...+.+...        ..++.....
T Consensus        50 TGSGKTlaf~lpil~~~~~~~~~~~------------~~~~~PTreL~~Qi~~~~~~l~~~~~~~~~~~~~~~~gg~~~~  117 (219)
T 1q0u_A           50 TGTGKTHAYLLPIXEKIKPERAEVQ------------AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQ  117 (219)
T ss_dssp             SSHHHHHHHHHHHHHHCCTTSCSCC------------EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred             CCCCCCCEEECCHHHCCCCCCCCCC------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHH
T ss_conf             9999764321002221342345765------------5322574999998887663320012334201025655671439


Q ss_pred             HHHHHCCCCCCEEEE------CCCCCCCCCCCEEEEEEEC
Q ss_conf             566410245747997------1832234412306999961
Q gi|254780401|r  126 GVQMLLQEGVDIIIM------DDGFHSADLQADFSLIVVN  159 (338)
Q Consensus       126 ~~~~~~~~~~diiIl------DDGfQh~~l~rdl~Ivl~d  159 (338)
                      .-......++++++-      |..-++.---.++..+++|
T Consensus       118 ~~~~~l~~~~~iiv~Tpgrl~~~~~~~~~~l~~i~~lVlD  157 (219)
T 1q0u_A          118 KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD  157 (219)
T ss_dssp             HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred             HHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             9999737999889968737899987277544653279986


No 265
>>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:1-196)
Probab=50.98  E-value=17  Score=16.67  Aligned_cols=27  Identities=33%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             CCCCCCHHHHHHHH-HHHHCCCCEEEEE
Q ss_conf             78887489999999-9852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAK-AVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~-~l~~~g~~~~ils   81 (338)
                      -|+|||=+....+. .+.+.+.++.++.
T Consensus        32 tG~GKT~~~~~~~l~~~~~~~~~vl~i~   59 (196)
T 1wp9_A           32 TGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9773999999999999985599199992


No 266
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:1-254)
Probab=50.96  E-value=13  Score=17.38  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=24.6

Q ss_pred             CCCCCCHHHHHHH-HHHHHCCCCEEEEEECCC
Q ss_conf             7888748999999-998524731598760457
Q gi|254780401|r   55 GGTGKTPTALAIA-KAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        55 GGtGKTP~v~~l~-~~l~~~g~~~~ilsRGYg   85 (338)
                      -|+|||-++..++ ......|.++.++|-.+.
T Consensus        48 pG~GKT~~~~q~~~~~~~~~~~~~~~~s~e~~   79 (254)
T 1tf7_A           48 SGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   79 (254)
T ss_dssp             TTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             99999999999999999867981999977799


No 267
>>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} (A:)
Probab=50.86  E-value=13  Score=17.55  Aligned_cols=33  Identities=9%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      |.+||||  -+=.+|++.|.++|+.+.++.|.--.
T Consensus         4 LVtGatG--fiG~~l~~~L~~~g~~v~~~~r~~~~   36 (299)
T 1n2s_A            4 LLFGKTG--QVGWELQRSLAPVGNLIALDVHSKEF   36 (299)
T ss_dssp             EEECTTS--HHHHHHHHHTTTTSEEEEECTTCSSS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             9989998--89999999998789999997898544


No 268
>>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} (A:464-622)
Probab=50.83  E-value=12  Score=17.68  Aligned_cols=28  Identities=32%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88988998230007888748999999998524
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ..-|+|.|    +||||=||+.-+|-..+...
T Consensus         5 ~~~~~i~I----a~GtGIaP~~s~l~~~~~~~   32 (159)
T 1ja1_A            5 STTPVIMV----GPGTGIAPFMGFIQERAWLR   32 (159)
T ss_dssp             TTSCEEEE----CCGGGGHHHHHHHHHHHHHH
T ss_pred             CCCCEEEE----ECCCCCHHHHHHHHHHHHHH
T ss_conf             99987999----56866302789999999998


No 269
>>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} (A:)
Probab=50.76  E-value=7.6  Score=19.08  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=17.8

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             33889889982300078887489999999
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      +.....||.||+   +|.|||-++..++.
T Consensus        22 ~~~~~KiiivGd---~gVGKTsLi~r~~~   47 (193)
T 2oil_A           22 YNFVFKVVLIGE---SGVGKTNLLSRFTR   47 (193)
T ss_dssp             CSEEEEEEEESS---TTSSHHHHHHHHHH
T ss_pred             CCEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf             777889999998---99799999999964


No 270
>>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} (A:1-185)
Probab=50.73  E-value=7.5  Score=19.11  Aligned_cols=33  Identities=36%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +--++--|-   -|||||=++.++|+.+.   .....++
T Consensus        49 ~~giLL~Gp---pGtGKT~la~ala~~l~---~~~~~i~   81 (185)
T 2ce7_A           49 PKGILLVGP---PGTGKTLLARAVAGEAN---VPFFHIS   81 (185)
T ss_dssp             CSEEEEECC---TTSSHHHHHHHHHHHHT---CCEEEEE
T ss_pred             CCEEEEECC---CCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf             965999799---99988999999986308---8179988


No 271
>>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (B:33-63,B:339-522)
Probab=50.66  E-value=17  Score=16.63  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCHHHHHHHHCCCCCCEE
Q ss_conf             89999999985247315987604578777755871456788770421233220--5763465201225664102457479
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDRKIGVQMLLQEGVDII  138 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R~~~~~~~~~~~~dii  138 (338)
                      ..+..+++.|.+.|..|+.+.=+.+.+.           ..+...++-.-+..  ...|+++.|-.+-...+.+.++|++
T Consensus        66 ~~~~~la~fL~ElGm~vv~~~~~~~~~~-----------~~e~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDLi  134 (215)
T 1m1n_B           66 DFVMGLVKFLLELGCEPVHILCHNGNKR-----------WKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFM  134 (215)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEETTCCHH-----------HHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHSCCSEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCEE
T ss_conf             8999999999986997349994589978-----------99999999852556878779968999999999862799999


Q ss_pred             EEC
Q ss_conf             971
Q gi|254780401|r  139 IMD  141 (338)
Q Consensus       139 IlD  141 (338)
                      |-.
T Consensus       135 ig~  137 (215)
T 1m1n_B          135 IGN  137 (215)
T ss_dssp             EEC
T ss_pred             EEC
T ss_conf             978


No 272
>>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} (A:198-371)
Probab=50.61  E-value=6.6  Score=19.53  Aligned_cols=34  Identities=29%  Similarity=0.254  Sum_probs=22.0

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .+--++-.|-   -|||||=++.++|+.+.   .....++
T Consensus        40 ~~~giLl~Gp---pGtGKT~~a~AlA~~~~---~~~~~~~   73 (174)
T 1e32_A           40 PPRGILLYGP---PGTGKTLIARAVANETG---AFFFLIN   73 (174)
T ss_dssp             CCCEEEEECC---TTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred             CCCEEEEECC---CCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf             8844798898---99998999999999969---9689998


No 273
>>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} (A:1-185)
Probab=50.54  E-value=6.7  Score=19.50  Aligned_cols=30  Identities=37%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899823000788874899999999852473159876
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ++--|-   =|||||-++.++|+.+..   ....++
T Consensus        52 iLl~Gp---pGtGKT~la~ala~~~~~---~~~~i~   81 (185)
T 1ixz_A           52 VLLVGP---PGVGKTHLARAVAGEARV---PFITAS   81 (185)
T ss_dssp             EEEECC---TTSSHHHHHHHHHHHTTC---CEEEEE
T ss_pred             EEEECC---CCCCCHHHHHHHHHHCCC---CEEEEE
T ss_conf             687679---987720899999977399---769988


No 274
>>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99)
Probab=50.46  E-value=17  Score=16.61  Aligned_cols=48  Identities=13%  Similarity=0.221  Sum_probs=28.4

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCEEEECCC--C----CCCCCCCEEEEEEECCCC
Q ss_conf             76346520122566410245747997183--2----234412306999961843
Q gi|254780401|r  115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDG--F----HSADLQADFSLIVVNSHR  162 (338)
Q Consensus       115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDG--f----Qh~~l~rdl~Ivl~d~~~  162 (338)
                      ..|.+..+-.+|...+.+..+|+|||+|+  +    +=++..++.-|+++.+..
T Consensus        25 ~~v~~a~~~~~a~~~~~~~~~dlviLp~~~G~~ll~~lr~~~~~~pvI~lt~~~   78 (99)
T 2hqr_A           25 FMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNP   78 (99)
T ss_dssp             CCEEEESSHHHHHHHHTTSCCSEEEECCTTHHHHHHHHHHHCTTSEEEEEESSC
T ss_pred             CEEEEECCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999998999999999973698611022233211112222222222221233211


No 275
>>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* (A:)
Probab=50.42  E-value=17  Score=16.61  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  -+=.+|++.|.++|+.+.++.|.-..
T Consensus         4 lVtGatG--~iG~~lv~~Ll~~g~~V~~~~~~~~~   36 (311)
T 2p5y_A            4 LVTGGAG--FIGSHIVEDLLARGLEVAVLDNLATG   36 (311)
T ss_dssp             EEETTTS--HHHHHHHHHHHTTTCEEEEECCCSSC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9988878--89999999999786989999788866


No 276
>>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} (A:1-181)
Probab=50.21  E-value=7.7  Score=19.05  Aligned_cols=34  Identities=41%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .|--++..|-   -|||||-++.++|+.+.   .....++
T Consensus        44 ~~~giLl~Gp---pGtGKT~la~a~a~~~~---~~~~~~~   77 (181)
T 1lv7_A           44 IPKGVLMVGP---PGTGKTLLAKAIAGEAK---VPFFTIS   77 (181)
T ss_dssp             CCCEEEEECC---TTSCHHHHHHHHHHHHT---CCEEEEC
T ss_pred             CCCEEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEE
T ss_conf             8975786689---99877699999998809---9869988


No 277
>>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} (A:238-291)
Probab=50.14  E-value=12  Score=17.72  Aligned_cols=40  Identities=13%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             5789998874010000122143323489899999999756
Q gi|254780401|r  234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQ  273 (338)
Q Consensus       234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~  273 (338)
                      ++-..++|.+.|.--+....-..||.|+..|+..|+..++
T Consensus        14 ~~el~~il~e~g~iev~C~FC~~~Y~f~~~el~~l~~~~~   53 (54)
T 1vzy_A           14 KKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQTT   53 (54)
T ss_dssp             HHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHHHHCC
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHCC
T ss_conf             9999999963997899976879989879999999986513


No 278
>>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418)
Probab=50.11  E-value=17  Score=16.57  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC---CC-CCCCCCHHHHHHHHCCCCCC
Q ss_conf             899999999852473159876045787777558714567887704212332205---76-34652012256641024574
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR---AV-TIVTSDRKIGVQMLLQEGVD  136 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~---~p-v~V~~~R~~~~~~~~~~~~d  136 (338)
                      ..+..+++.|++.|..|..+.=+++.              ...--++--.++..   .+ |+.+.|..+-.+.+.+.++|
T Consensus        13 ~~~~~l~~~l~ElGm~vv~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~vv~~~d~~el~~~i~~~~pD   78 (109)
T 1mio_B           13 DEIIALSKFIIELGAIPKYVVTGTPG--------------MKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVD   78 (109)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEESSCC--------------HHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCC--------------HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCC
T ss_conf             88999999999849901488726897--------------7778999999986589887899799999999999744999


Q ss_pred             EEEECCCCCCCCCCCEEEEEEE
Q ss_conf             7997183223441230699996
Q gi|254780401|r  137 IIIMDDGFHSADLQADFSLIVV  158 (338)
Q Consensus       137 iiIlDDGfQh~~l~rdl~Ivl~  158 (338)
                      ++|-.  -.-+.+.+.+.|=++
T Consensus        79 liig~--s~~~~~a~klgiP~i   98 (109)
T 1mio_B           79 LLISN--TYGKFIAREENIPFV   98 (109)
T ss_dssp             EEEES--GGGHHHHHHHTCCEE
T ss_pred             EEEEC--CHHHHHHHHCCCCEE
T ss_conf             99979--458999998299989


No 279
>>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} (A:)
Probab=50.10  E-value=17  Score=16.57  Aligned_cols=33  Identities=21%  Similarity=0.156  Sum_probs=26.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      |.+||||  -+=.+|++.|.++|+.|..+.|.-..
T Consensus         8 LVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (286)
T 3ius_A            8 LLSFGHG--YTARVLSRALAPQGWRIIGTSRNPDQ   40 (286)
T ss_dssp             EEEETCC--HHHHHHHHHHGGGTCEEEEEESCGGG
T ss_pred             EEEECCH--HHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf             8998960--99999999999789989999388133


No 280
>>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} (A:1-91)
Probab=50.08  E-value=7.9  Score=18.95  Aligned_cols=30  Identities=17%  Similarity=0.081  Sum_probs=22.3

Q ss_pred             CCCC-CCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             7634-65201225664102457479971832
Q gi|254780401|r  115 AVTI-VTSDRKIGVQMLLQEGVDIIIMDDGF  144 (338)
Q Consensus       115 ~pv~-V~~~R~~~~~~~~~~~~diiIlDDGf  144 (338)
                      ..|+ .+.+-.+|.+.+.+..+|+||+|=-+
T Consensus        34 ~~v~~~a~~g~~Al~~~~~~~pDliilDi~l   64 (91)
T 3cg0_A           34 YDVLGVFDNGEEAVRCAPDLRPDIALVDIML   64 (91)
T ss_dssp             CEEEEEESSHHHHHHHHHHHCCSEEEEESSC
T ss_pred             CCEEEEECCHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9569986899999999983799889986035


No 281
>>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} (A:)
Probab=50.08  E-value=15  Score=16.93  Aligned_cols=60  Identities=12%  Similarity=0.086  Sum_probs=35.1

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             8638987415535789998874010000-12214332348989999999975647987998
Q gi|254780401|r  222 GKKVLAFSGIADTEKFFTTVRQLGALIE-QCYSFGDHAHLSDKKIAYLLDQAQQKGLILVT  281 (338)
Q Consensus       222 ~k~v~afsGIa~P~~F~~~L~~~g~~i~-~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiT  281 (338)
                      +....-+.-+.|-..+...+-+..-... +.....+...++..|+.+++.++......+..
T Consensus       188 ~~~~~~~i~~~D~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~  248 (313)
T 1qyd_A          188 GNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIY  248 (313)
T ss_dssp             SCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             7640364129999999999966911029679994899887799999999999899870898


No 282
>>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} (A:)
Probab=49.98  E-value=16  Score=16.70  Aligned_cols=101  Identities=20%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH
Q ss_conf             078887489999999985247315987604578777755871456788770421233220576----3465201225664
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM  129 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~  129 (338)
                      -=|||||=.  |+.-.+..........   +....-..+++.+...-+.++-+|...+.....    +..+..+..-. .
T Consensus        65 ~TGSGKT~a--f~ip~l~~~~~~~~~~---~~~~~~~~lIl~PTrELa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~-~  138 (228)
T 3iuy_A           65 QTGTGKTLS--YLMPGFIHLDSQPISR---EQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI-E  138 (228)
T ss_dssp             CTTSCHHHH--HHHHHHHHHC------------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH-H
T ss_pred             CCCCCCCCH--HHHHHHHHHHCCCCCC---CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH-H
T ss_conf             899986501--4777899875152100---146785599980532468999999998645998799998998879999-9


Q ss_pred             HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC
Q ss_conf             10245747997183-----2-2344123069999618
Q gi|254780401|r  130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS  160 (338)
Q Consensus       130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~  160 (338)
                      ....++++++.--|     + ++.---..+..+++|-
T Consensus       139 ~~~~~~~ivv~Tpgrl~~~~~~~~~~l~~l~~lVlDE  175 (228)
T 3iuy_A          139 DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDE  175 (228)
T ss_dssp             HHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred             HHCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEECC
T ss_conf             8628999999796455434666751267624998514


No 283
>>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* (X:1-216,X:335-355)
Probab=49.97  E-value=7.8  Score=19.01  Aligned_cols=35  Identities=26%  Similarity=0.134  Sum_probs=25.1

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             38898899823000788874899999999852473159876
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..+--|+..|--   |||||-++.+||+.+.   .....++
T Consensus        82 ~~~~giLl~GPP---GtGKT~lakaiA~~l~---~~~~~~~  116 (237)
T 2qp9_X           82 KPTSGILLYGPP---GTGKSYLAKAVATEAN---STFFSVS  116 (237)
T ss_dssp             CCCCCEEEECST---TSCHHHHHHHHHHHHT---CEEEEEE
T ss_pred             CCCCCCEEECCC---CCCCCHHHHHHHHHHH---CCCEEEE
T ss_conf             888865446899---9986447787898874---2462765


No 284
>>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum} (A:1-196,A:353-390)
Probab=49.93  E-value=4.3  Score=20.87  Aligned_cols=30  Identities=27%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CCCCCC-HHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874-899999999852473159876045
Q gi|254780401|r   55 GGTGKT-PTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKT-P~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      =||||| =+.+.+.+++.+.+.++.|+++-.
T Consensus        13 TGsGKTlayLlp~l~~l~~~~~k~iIltPT~   43 (234)
T 2vsf_A           13 TGSGKTIMALKSALQYSSERKLKVLYLVRTN   43 (234)
T ss_dssp             SSSSTTHHHHHTTCSSTTTTSCEEEEEESSH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             7688999999999999997699199986679


No 285
>>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* (A:)
Probab=49.70  E-value=12  Score=17.71  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=17.6

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..+|+|.-.  -|+|||    -||+.|.+.+..+.+.+
T Consensus        21 ~~iI~i~G~--~GsGKt----Tla~~L~~~~~~~~~~~   52 (207)
T 2qt1_A           21 TFIIGISGV--TNSGKT----TLAKNLQKHLPNCSVIS   52 (207)
T ss_dssp             CEEEEEEES--TTSSHH----HHHHHHHTTSTTEEEEE
T ss_pred             EEEEEEECC--CCCCHH----HHHHHHHHHHCCCEEEE
T ss_conf             299999999--987699----99999999808985995


No 286
>>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima} (A:245-302)
Probab=49.52  E-value=18  Score=16.51  Aligned_cols=42  Identities=10%  Similarity=0.109  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             5789998874010000122143323489899999999756479
Q gi|254780401|r  234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG  276 (338)
Q Consensus       234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~  276 (338)
                      ++-..+++++-.+.+ ....-..||.|++.|++.|++.+...+
T Consensus        15 ~~el~~i~~eg~iev-~C~fC~~~Y~f~~~el~~l~~~~~~~~   56 (58)
T 1vq0_A           15 KKELEDMRKEGKGEV-VCKWCNTRYVFSEEELEELLKFKVDDS   56 (58)
T ss_dssp             HHHHHHHHHHTCEEE-ECTTTCCEEEECHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHCCCEEE-EEECCCCEEEECHHHHHHHHHHCCCCC
T ss_conf             999999997598399-998989979869999999997425988


No 287
>>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} (A:)
Probab=49.43  E-value=5.9  Score=19.88  Aligned_cols=39  Identities=21%  Similarity=0.182  Sum_probs=29.3

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             988998230007888748999999998524731598760457
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      .-|+..|.   -|+|||-.+..|++.|...++.+....|-+.
T Consensus         6 ~~I~ieG~---~GSGKtT~a~~Lae~l~~~~i~~~~~~r~~~   44 (222)
T 1zak_A            6 LKVMISGA---PASGKGTQCELIKTKYQLAHISAGDLLRAEI   44 (222)
T ss_dssp             CCEEEEES---TTSSHHHHHHHHHHHHCCEECCHHHHHHHHH
T ss_pred             CEEEEECC---CCCCHHHHHHHHHHHHCCEEECHHHHHHHHH
T ss_conf             08999899---9999799999999997997784899999988


No 288
>>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:)
Probab=49.42  E-value=18  Score=16.50  Aligned_cols=89  Identities=8%  Similarity=0.027  Sum_probs=51.4

Q ss_pred             EECCCCC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHH-HHHHH
Q ss_conf             0078887-489999999985247315987604578777755871456788770421233220576346520122-56641
Q gi|254780401|r   53 VMGGTGK-TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKI-GVQML  130 (338)
Q Consensus        53 tvGGtGK-TP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~-~~~~~  130 (338)
                      .+|.|.+ +.....+++.|++.|+++.++..+++...-....+..   +..++.+++=+    +-+++..+... ..+.+
T Consensus        18 ViGaS~~~~~~g~~v~~~L~~~g~~~~~~~p~~~~~~i~g~~~~~---sl~~~~~~~D~----vvi~vp~~~~~~~l~e~   90 (140)
T 1iuk_A           18 VLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVA---SLLDLKEPVDI----LDVFRPPSALMDHLPEV   90 (140)
T ss_dssp             EETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBS---SGGGCCSCCSE----EEECSCHHHHTTTHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCEEEEC---CHHHCCCCCCE----EEEEECHHHHHHHHHHH
T ss_conf             992269999719999999972898389978767642556827525---56775899728----99980889989999999


Q ss_pred             CCCCCC-EEEECCCCCCCC
Q ss_conf             024574-799718322344
Q gi|254780401|r  131 LQEGVD-IIIMDDGFHSAD  148 (338)
Q Consensus       131 ~~~~~d-iiIlDDGfQh~~  148 (338)
                      .+.++. +++.-+||+...
T Consensus        91 ~~~g~~~~~~~~g~~~e~~  109 (140)
T 1iuk_A           91 LALRPGLVWLQSGIRHPEF  109 (140)
T ss_dssp             HHHCCSCEEECTTCCCHHH
T ss_pred             HHCCCCEEEECCCCCCHHH
T ss_conf             9649898998989779999


No 289
>>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: AMP; 2.28A {Pyrococcus horikoshii} (A:)
Probab=49.32  E-value=18  Score=16.49  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEEECC---CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC----CCCHHHHHHHHC
Q ss_conf             74899999999852473159876045---78777755871456788770421233220576346----520122566410
Q gi|254780401|r   59 KTPTALAIAKAVIDKNLKPGFLSRGY---GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIV----TSDRKIGVQMLL  131 (338)
Q Consensus        59 KTP~v~~l~~~l~~~g~~~~ilsRGY---g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V----~~~R~~~~~~~~  131 (338)
                      --|+..|+.+.+++.|..=+.+.||.   |...+  +      |     .+..+-++..-||+|    .+++.+......
T Consensus        24 g~pl~~~il~~~r~~GiaGaTV~rgi~GfG~~g~--i------h-----~~~~~~ls~dlPvvVe~vd~~eki~~~l~~l   90 (127)
T 2dcl_A           24 GRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSR--V------H-----SSDVIRLSTDLPIIVEVVDRGHNIEKVVNVI   90 (127)
T ss_dssp             TEEHHHHHHHHHHHTTCSCEEEEECSEEEC---------------------------CCCEEEEEEEEEHHHHHHHHHHH
T ss_pred             CEEHHHHHHHHHHHCCCCCEEEEECCEECCCCCC--C------C-----CCCHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             6399999999998879982699853152189987--1------2-----5622111699988999977999999999999


Q ss_pred             C-C-CCCEEEECCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             2-4-57479971832234412306999961843356
Q gi|254780401|r  132 Q-E-GVDIIIMDDGFHSADLQADFSLIVVNSHRGLG  165 (338)
Q Consensus       132 ~-~-~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~g  165 (338)
                      + . .--+|++.          |++++-+....++|
T Consensus        91 ~~l~~~glit~e----------~v~v~~~~~~~~~~  116 (127)
T 2dcl_A           91 KPMIKDGMITVE----------PTIVLWVGTQEEIK  116 (127)
T ss_dssp             TTTCSSSEEEEE----------ECEEEECCSSCC--
T ss_pred             HHHCCCCEEEEE----------EEEEEEECCCCCCC
T ss_conf             986468649999----------88999966866533


No 290
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:1-202)
Probab=49.29  E-value=5.5  Score=20.07  Aligned_cols=32  Identities=16%  Similarity=0.105  Sum_probs=22.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89982300078887489999999985247315987
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      |+..|   .+|+|||-++..+++.+...+....+.
T Consensus        34 v~i~G---~~G~GKTsL~~~~~~~~~~~~~~~~~~   65 (202)
T 2qen_A           34 TLLLG---IRRVGKSSLLRAFLNERPGILIDCREL   65 (202)
T ss_dssp             EEEEC---CTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99981---999989999999999644544158998


No 291
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:428-654)
Probab=49.22  E-value=5.2  Score=20.26  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=43.8

Q ss_pred             ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC-------CHHH------------
Q ss_conf             823000788874899999999852473159876045787777558714567887704-------2123------------
Q gi|254780401|r   49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG-------DEPL------------  109 (338)
Q Consensus        49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG-------DEp~------------  109 (338)
                      ||=+=.-|+|||-+.-.|+...............+|-....  .... ...++.+..       +|..            
T Consensus        37 i~lvG~NGaGKSTllk~l~g~~~~~~~~~~~~~~~~~~q~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  113 (227)
T 2iw3_A           37 YGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDI--DGTH-SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE  113 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC--CCCC-TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHH
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCCCCCCHHHCCEEEEEECC--CCCC-CCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
T ss_conf             37889999619999999968997887552113579997100--1357-76429999985794079999999986799714


Q ss_pred             HHHHCCCCCCCCCHHH-HHHHHCCCCCCEEEECCCCCCC
Q ss_conf             3220576346520122-5664102457479971832234
Q gi|254780401|r  110 LLARRAVTIVTSDRKI-GVQMLLQEGVDIIIMDDGFHSA  147 (338)
Q Consensus       110 lla~~~pv~V~~~R~~-~~~~~~~~~~diiIlDDGfQh~  147 (338)
                      ...+..-...+..|.+ ++..+.-.+++++|||.=--|.
T Consensus       114 ~~~~~~~~LSGGqkqRv~lA~~l~~~p~lLiLDEPTn~L  152 (227)
T 2iw3_A          114 XIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHL  152 (227)
T ss_dssp             HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             423728887889999999999873799813536897757


No 292
>>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} (A:202-291)
Probab=49.20  E-value=18  Score=16.48  Aligned_cols=50  Identities=8%  Similarity=0.177  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             78999887401000012214332348989999999975647987998546
Q gi|254780401|r  235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK  284 (338)
Q Consensus       235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK  284 (338)
                      ..|--..+.+|++.+..+.-..+..-|.+++.++.+.+++++...|-+|.
T Consensus        11 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~i~~l~~~ik~~~i~~if~e~   60 (90)
T 1xvl_A           11 GAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCES   60 (90)
T ss_dssp             STTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEET
T ss_pred             CCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             41146898679836640266887789988999999987634885899738


No 293
>>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} (B:104-262)
Probab=49.18  E-value=13  Score=17.34  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=25.7

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             8988998230007888748999999998524731598760457877
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS   88 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~   88 (338)
                      .-|+|.|    +||||=||+.-.+-..+.. +-++.++   |+.++
T Consensus         7 ~~~~i~I----agGtGIaP~~s~l~~~~~~-~~~v~l~---~g~r~   44 (159)
T 1ep3_B            7 TDKILII----GGGIGVPPLYELAKQLEKT-GCQMTIL---LGFAS   44 (159)
T ss_dssp             TSEEEEE----EEGGGSHHHHHHHHHHHHH-TCEEEEE---EEESS
T ss_pred             CCEEEEE----ECCCCHHHHHHHHHHHHHC-CCCCEEE---EEECC
T ss_conf             7549999----3776588999999999984-9964899---99798


No 294
>>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} (A:)
Probab=49.13  E-value=5.3  Score=20.21  Aligned_cols=38  Identities=21%  Similarity=0.126  Sum_probs=27.6

Q ss_pred             EEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             899-82300078887489999999985247315987604578
Q gi|254780401|r   46 VIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        46 VI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +|+ -||.   |+|||-++..|++.|...++.+....-.|.+
T Consensus         6 ~I~ieG~~---GsGKTT~a~~L~~~L~~~~~~~~~~~~~~~~   44 (331)
T 1e2k_A            6 RVYIDGPH---GMGKTTTTQLLVALGSRDDIVYVPEPMTYWR   44 (331)
T ss_dssp             EEEECSCT---TSSHHHHHHHHTC----CCEEEECCCHHHHH
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHHCCCCCEEEECCHHHCC
T ss_conf             99998897---7789999999999845489379825422125


No 295
>>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} (A:1-245)
Probab=49.09  E-value=4.1  Score=20.97  Aligned_cols=49  Identities=12%  Similarity=0.125  Sum_probs=20.2

Q ss_pred             ECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf             1456788770421233220576----346520122566410245747997183
Q gi|254780401|r   95 DLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQMLLQEGVDIIIMDDG  143 (338)
Q Consensus        95 ~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~~~~~~diiIlDDG  143 (338)
                      .+...-+.++.++-.-+.+..+    ++++.............+++++|..=|
T Consensus       108 ~pt~ela~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iiV~TP~  160 (245)
T 2i4i_A          108 APTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPG  160 (245)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHH
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf             56511023455555420135543257630676689999998369989998959


No 296
>>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:254-396)
Probab=48.92  E-value=17  Score=16.59  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=25.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -++|.    .+||||=||+.-.+-..+.........+-
T Consensus         7 ~~iil----iAgGtGIaP~~s~l~~~~~~~~~~~i~l~   40 (143)
T 1gvh_A            7 TPVTL----ISAGVGQTPMLAMLDTLAKAGHTAQVNWF   40 (143)
T ss_dssp             CCEEE----EEEGGGGHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCEEE----EECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             74899----96788667068999999873034430430


No 297
>>1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} (A:)
Probab=48.86  E-value=18  Score=16.44  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=26.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.+||||-+-.=..+++.|.++|+++.+..|-
T Consensus        12 lVTGass~~GIG~aia~~la~~Ga~V~i~~r~   43 (261)
T 1ulu_A           12 LVXGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (261)
T ss_dssp             EEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             99799998649999999999879999998074


No 298
>>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} (A:1-189)
Probab=48.64  E-value=18  Score=16.42  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=25.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||-  +=.+|++.|.++|+++.++.|.-..
T Consensus        18 lVTGgtGf--iG~~l~~~L~~~g~~V~~~~r~~~~   50 (189)
T 1rpn_A           18 LVTGITGQ--DGAYLAKLLLEKGYRVHGLVARRSS   50 (189)
T ss_dssp             EEETTTSH--HHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             99758878--9999999999784989999899976


No 299
>>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} (A:)
Probab=48.46  E-value=10  Score=18.14  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=17.6

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             763465201225664102457479971
Q gi|254780401|r  115 AVTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       115 ~pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      +.|..+.+-.+|...+.+..+|+||+|
T Consensus        28 ~~v~~a~~~~~al~~l~~~~~dliilD   54 (140)
T 2qr3_A           28 SKVITLSSPVSLSTVLREENPEVVLLD   54 (140)
T ss_dssp             SEEEEECCHHHHHHHHHHSCEEEEEEE
T ss_pred             CEEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf             999997787999999984078879862


No 300
>>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} (A:25-236)
Probab=48.40  E-value=16  Score=16.89  Aligned_cols=99  Identities=10%  Similarity=0.100  Sum_probs=48.0

Q ss_pred             ECCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCCCCCCHHHHHH
Q ss_conf             078887489-99999998524731598760457877775587145678877042123322057----6346520122566
Q gi|254780401|r   54 MGGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTIVTSDRKIGVQ  128 (338)
Q Consensus        54 vGGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~V~~~R~~~~~  128 (338)
                      -=|||||=. ++-+.+.+......        .........+......+.++-.+-..+++..    ..+++........
T Consensus        46 ~TGSGKTlaf~lP~~~~~~~~~~~--------~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (212)
T 2pl3_A           46 KTGSGKTLAFLVPVLEALYRLQWT--------STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA  117 (212)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCC--------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH
T ss_pred             CCCCCCEEEEECHHHHHHHHCCCC--------CCCCCCEEEECCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCHHHHH
T ss_conf             677774566643577633300233--------334420146534146665442100001345786338887146478888


Q ss_pred             HHCCCCCCEEEE-----CCCCCCCCCC-CEEEEEEECC
Q ss_conf             410245747997-----1832234412-3069999618
Q gi|254780401|r  129 MLLQEGVDIIIM-----DDGFHSADLQ-ADFSLIVVNS  160 (338)
Q Consensus       129 ~~~~~~~diiIl-----DDGfQh~~l~-rdl~Ivl~d~  160 (338)
                      .....++++++.     .|..+...+. ..+..+++|.
T Consensus       118 ~~~~~~~~i~v~tp~~l~~~~~~~~~~l~~v~~lVlDE  155 (212)
T 2pl3_A          118 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE  155 (212)
T ss_dssp             HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred             HHHCCCCEEEECCCCHHHHHHCCCCCCCCCEEEEECCC
T ss_conf             77547854763042010244315654345268975021


No 301
>>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} (A:223-374)
Probab=48.32  E-value=15  Score=16.98  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=23.0

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89889982300078887489999999985247315987
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      +-|+|.    .+||||=||+...+-..+....-...++
T Consensus         5 ~~~ivl----iagG~GitP~~s~l~~~~~~~~~~~~~l   38 (152)
T 1ddg_A            5 ETPVIM----IGPGTGIAPFRAFMQQRAADEAPGKNWL   38 (152)
T ss_dssp             TSCEEE----ECCGGGGHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCCEEE----EECCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             665799----9368672379999999997168984899


No 302
>>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* (A:157-314)
Probab=48.23  E-value=13  Score=17.45  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=19.9

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             988998230007888748999999998524
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      -+++.    .+||||=||+...+-..++..
T Consensus        10 ~~~vl----iAgGtGitP~~s~l~~~~~~~   35 (158)
T 2rc5_A           10 GDIMF----LATGTGIAPFIGMSEELLEHK   35 (158)
T ss_dssp             SCEEE----EEEGGGGHHHHHHHHHHHTTC
T ss_pred             CCEEE----EECCEEHHHHHHHHHHHHHHH
T ss_conf             86899----966762718999999999742


No 303
>>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} (A:)
Probab=48.16  E-value=18  Score=16.37  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=27.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|.-..
T Consensus         3 lVtG~tG--fiG~~lv~~L~~~g~~v~~~~r~~~~   35 (310)
T 1eq2_A            3 IVTGGAG--FIGSNIVKALNDKGITDILVVDNLKD   35 (310)
T ss_dssp             EEETTTS--HHHHHHHHHHHTTTCCCEEEEECCSS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             9973887--89999999998589977999957986


No 304
>>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} (A:65-322)
Probab=47.97  E-value=4.9  Score=20.43  Aligned_cols=28  Identities=14%  Similarity=-0.056  Sum_probs=24.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      -|+|||.++.-++......|.+++.+|-
T Consensus        43 pG~GKT~l~~q~~~~~~~~~~~~~~~~~   70 (258)
T 2i1q_A           43 FGSGKTQIMHQSCVNLQNPEFLFYDEEA   70 (258)
T ss_dssp             TTSSHHHHHHHHHHHTTCGGGEECCTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9974788999999999844895699962


No 305
>>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* (A:)
Probab=47.96  E-value=3.8  Score=21.19  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=21.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      -|+|||-++..|++.|...++.+....+
T Consensus         9 ~GsGKtTla~~L~~~l~~~~i~~~~~~~   36 (205)
T 2jaq_A            9 VGAGKSTISAEISKKLGYEIFKEPVEEN   36 (205)
T ss_dssp             TTSCHHHHHHHHHHHHCCEEECCCGGGC
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             8888999999999985996698578887


No 306
>>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A (A:1-182)
Probab=47.87  E-value=15  Score=17.01  Aligned_cols=29  Identities=24%  Similarity=0.343  Sum_probs=23.7

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             07888748999999998524731598760
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .=|+|||-+...|++.|......+.++.+
T Consensus        12 ~sGsGKSTl~r~L~~~l~~~~~~~~~~~~   40 (182)
T 3a4m_A           12 LPGVGKSTFSKNLAKILSKNNIDVIVLGS   40 (182)
T ss_dssp             CTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             99998999999999998742999599782


No 307
>>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* (A:1-70,A:135-245)
Probab=47.57  E-value=15  Score=17.04  Aligned_cols=36  Identities=25%  Similarity=0.227  Sum_probs=23.9

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCC-----CCEEEEEE
Q ss_conf             889982300078887489999999985247-----31598760
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKN-----LKPGFLSR   82 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-----~~~~ilsR   82 (338)
                      .||+|.-  .-|+|||-++..|++.|....     ...+.+|.
T Consensus        26 ~~i~i~G--~~gsGKsT~a~~l~~~~~~~~~~~~~~~~~~~~~   66 (181)
T 2jeo_A           26 FLIGVSG--GTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQ   66 (181)
T ss_dssp             EEEEEEC--STTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEG
T ss_pred             EEEEEEC--CCCCCHHHHHHHHHHHHCCCEECCCCCEEEEECC
T ss_conf             8999789--9866499999999999685722678605899727


No 308
>>3i0z_A Putative tagatose-6-phosphate ketose/aldose isomerase; NP_344614.1, structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4} (A:55-173)
Probab=47.51  E-value=19  Score=16.30  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             CCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCC
Q ss_conf             788874899999999852--47315987604578
Q gi|254780401|r   55 GGTGKTPTALAIAKAVID--KNLKPGFLSRGYGR   86 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~--~g~~~~ilsRGYg~   86 (338)
                      --+|+||-++.+++++++  +|.++..++-...+
T Consensus        63 S~sG~t~~~~~~~~~ak~~~~g~~vIaiT~~~~s   96 (119)
T 3i0z_A           63 ARSGNSPESLATVDLAKSLVDELYQVTITCAADG   96 (119)
T ss_dssp             ESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf             4785878999999999985778764033058897


No 309
>>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:1-112,A:171-206)
Probab=47.50  E-value=9.1  Score=18.53  Aligned_cols=18  Identities=33%  Similarity=0.220  Sum_probs=14.6

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             788874899999999852
Q gi|254780401|r   55 GGTGKTPTALAIAKAVID   72 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~   72 (338)
                      -|+|||-++..||+.+.-
T Consensus         9 pGSGKTTlAk~LA~~lg~   26 (148)
T 2rgx_A            9 PGAGKGTQAKRLAKEKGF   26 (148)
T ss_dssp             TTSSHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHCC
T ss_conf             999879999999998799


No 310
>>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} (A:1-114)
Probab=47.32  E-value=11  Score=18.06  Aligned_cols=24  Identities=21%  Similarity=0.084  Sum_probs=15.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      =|+|||-++..|++.+    -.+.++|.
T Consensus        11 pGsGKTT~a~~L~~~~----~~~~~~~~   34 (114)
T 1ly1_A           11 PGSGKSTWAREFIAKN----PGFYNINR   34 (114)
T ss_dssp             TTSSHHHHHHHHHHHS----TTEEEECH
T ss_pred             CCCCHHHHHHHHHHHC----CCCEEEEC
T ss_conf             9999899999999848----99799851


No 311
>>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:)
Probab=47.13  E-value=4.8  Score=20.48  Aligned_cols=20  Identities=15%  Similarity=0.179  Sum_probs=11.5

Q ss_pred             EEEEECCCCHHHHHHHHHHH
Q ss_conf             89874155357899988740
Q gi|254780401|r  225 VLAFSGIADTEKFFTTVRQL  244 (338)
Q Consensus       225 v~afsGIa~P~~F~~~L~~~  244 (338)
                      +++=+++=+|+.|.+.++..
T Consensus       232 vLvG~asl~~~~f~~ii~~~  251 (256)
T 1aw2_A          232 ALVGGAALDAKSFAAIAKAA  251 (256)
T ss_dssp             EEESGGGGCHHHHHHHHHHH
T ss_pred             EEECHHHCCHHHHHHHHHHH
T ss_conf             99536766989999999999


No 312
>>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} (A:)
Probab=47.03  E-value=11  Score=17.92  Aligned_cols=30  Identities=13%  Similarity=0.281  Sum_probs=24.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      -|+|||-++..|++.|.-..+....+.|+.
T Consensus        34 ~GsGKsTva~~La~~lg~~~i~~~~~~~~~   63 (211)
T 1m7g_A           34 SASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             TTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf             999989999999999998639988997538


No 313
>>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* (A:)
Probab=46.96  E-value=19  Score=16.25  Aligned_cols=69  Identities=12%  Similarity=0.062  Sum_probs=38.2

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECHHHHHHCC
Q ss_conf             863898741553578999887401-000012214332348989999999975647987-998546634382
Q gi|254780401|r  222 GKKVLAFSGIADTEKFFTTVRQLG-ALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI-LVTTAKDAMRLH  290 (338)
Q Consensus       222 ~k~v~afsGIa~P~~F~~~L~~~g-~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTTEKD~VKL~  290 (338)
                      +....-++-+.+=......+-... ..-.+.....+...++..|+.+...++...... ..+...|.-++.
T Consensus       182 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~  252 (318)
T 2r6j_A          182 GEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALT  252 (318)
T ss_dssp             SCCEEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHHHHHHH
T ss_pred             CCCCCCEEEHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHH
T ss_conf             34546424599999999998348063298799718998425999999999997998828988999999998


No 314
>>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} (A:)
Probab=46.63  E-value=19  Score=16.21  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=28.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             000788874899999999852473159876045787
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      +.+||||  -+=.+|++.|.++|+.+.+..|+....
T Consensus         7 LVtGatG--fiG~~lv~~L~~~g~~v~~~~r~~~~~   40 (321)
T 1e6u_A            7 FIAGHRG--MVGSAIRRQLEQRGDVELVLRTRDELN   40 (321)
T ss_dssp             EEETTTS--HHHHHHHHHHTTCTTEEEECCCTTTCC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEECCCHHCC
T ss_conf             9987998--899999999997869899966713414


No 315
>>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} (A:)
Probab=46.59  E-value=12  Score=17.62  Aligned_cols=96  Identities=14%  Similarity=0.054  Sum_probs=45.0

Q ss_pred             ECCCCCCHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-----CCCCHHHHH
Q ss_conf             0788874899-9999998524731598760457877775587145678877042123322057634-----652012256
Q gi|254780401|r   54 MGGTGKTPTA-LAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-----VTSDRKIGV  127 (338)
Q Consensus        54 vGGtGKTP~v-~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-----V~~~R~~~~  127 (338)
                      -=|||||=.- +-+...+.....+           ....+++.+...-+.++-++...++....+.     .+.......
T Consensus        74 ~TGSGKTlaflip~l~~~~~~~~~-----------~~~alIl~PTrELa~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~  142 (245)
T 3dkp_A           74 PTGSGKTLAFSIPILMQLKQPANK-----------GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF  142 (245)
T ss_dssp             CTTSCHHHHHHHHHHHHHCSCCSS-----------SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT
T ss_pred             CCCCCEEEEEEEHHHHHHHHCCCC-----------CCEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCHHH
T ss_conf             355433666510566542320478-----------835999568744132023210233321000001222222331035


Q ss_pred             HHHCCCCCCEEEECCCCCCC-------C-CCCEEEEEEECC
Q ss_conf             64102457479971832234-------4-123069999618
Q gi|254780401|r  128 QMLLQEGVDIIIMDDGFHSA-------D-LQADFSLIVVNS  160 (338)
Q Consensus       128 ~~~~~~~~diiIlDDGfQh~-------~-l~rdl~Ivl~d~  160 (338)
                      ....+.++++++.-.|--..       . --+++..+++|-
T Consensus       143 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~l~~v~~lVlDE  183 (245)
T 3dkp_A          143 GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE  183 (245)
T ss_dssp             STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred             HHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEEECHH
T ss_conf             67652588614421256688876402212243101440011


No 316
>>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel beta-sheet flanked by 7 alpha- helices, transferase; 2.00A {Homo sapiens} (A:)
Probab=46.55  E-value=9.6  Score=18.36  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=16.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             89982300078887489999999985
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      |+.+|.   -|+|||-++.+|++.|.
T Consensus         7 I~i~G~---~GsGKtTla~~La~~l~   29 (173)
T 1rkb_A            7 ILLTGT---PGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHC
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf             989889---99998999999999979


No 317
>>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} (A:)
Probab=46.54  E-value=7.7  Score=19.05  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=17.2

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7888748999999998524731
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      -|+|||-++..|++.|....+.
T Consensus        15 ~GsGKTT~a~~La~~l~~~~i~   36 (194)
T 1qf9_A           15 PGSGKGTQCANIVRDFGWVHLS   36 (194)
T ss_dssp             TTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCEEC
T ss_conf             9998899999999996994576


No 318
>>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus aureus subsp} (A:)
Probab=46.49  E-value=19  Score=16.20  Aligned_cols=67  Identities=9%  Similarity=0.039  Sum_probs=38.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf             68638987415535789998874010000122143323489899999999756479879985466343
Q gi|254780401|r  221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMR  288 (338)
Q Consensus       221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VK  288 (338)
                      .+.....+.-+.+-......+-..+.. ......-.....+..++.++..++......++....+..+
T Consensus       164 ~~~~~~~~v~~~d~a~~~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~g~~~~~~~~~~~~~~  230 (289)
T 3e48_A          164 AGDGRINYITRNDIARGVIAIIKNPDT-WGKRYLLSGYSYDXKELAAILSEASGTEIKYEPVSLETFA  230 (289)
T ss_dssp             CTTCEEEEECHHHHHHHHHHHHHCGGG-TTCEEEECCEEEEHHHHHHHHHHHHTSCCEECCCCHHHHH
T ss_pred             EECCCCCCEEHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf             202455852499999999986508555-4407996698788899999999998980238978999999


No 319
>>2hun_A 336AA long hypothetical DTDP-glucose 4,6- dehydratase; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii OT3} (A:)
Probab=46.29  E-value=20  Score=16.18  Aligned_cols=33  Identities=15%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  -+=.+|++.|.++|+.+.+++|....
T Consensus         7 lItGatG--~iG~~lv~~Ll~~g~~v~~~~~~~~~   39 (336)
T 2hun_A            7 LVTGGMG--FIGSNFIRYILEKHPDWEVINIDKLG   39 (336)
T ss_dssp             EEETTTS--HHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             9966877--89999999999669997899995798


No 320
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:1-177)
Probab=46.13  E-value=9.8  Score=18.29  Aligned_cols=33  Identities=24%  Similarity=0.188  Sum_probs=23.9

Q ss_pred             CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             643388988998230007888748999999998524
Q gi|254780401|r   38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      +..+.|--++-.|-   -|||||-++..+++.+...
T Consensus        33 ~~~~~~~~~Ll~Gp---pG~GKT~~A~~la~~~~~~   65 (177)
T 1jr3_A           33 SLGRIHHAYLFSGT---RGVGKTSIARLLAKGLNCE   65 (177)
T ss_dssp             HHTCCCSEEEEESC---TTSSHHHHHHHHHHHHSCT
T ss_pred             HCCCCCCEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             86997723765799---9987999999999996787


No 321
>>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4} (A:)
Probab=46.01  E-value=9.7  Score=18.34  Aligned_cols=33  Identities=15%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             88998230007888748999999998524731598760
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      ||=+|.|.+.|.+|.     +||+.+..+|+.|..+++
T Consensus        19 ~VR~ItN~SSGk~G~-----~lA~~~~~~Ga~V~li~g   51 (232)
T 2gk4_A           19 SVRSITNHSTGHLGK-----IITETLLSAGYEVCLITT   51 (232)
T ss_dssp             SSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEC
T ss_pred             CCCEECCCCCHHHHH-----HHHHHHHHCCCEEEEEEC
T ss_conf             821668369669999-----999999978998999955


No 322
>>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108)
Probab=45.98  E-value=20  Score=16.14  Aligned_cols=61  Identities=10%  Similarity=0.098  Sum_probs=24.3

Q ss_pred             EEEECCCCHHH-HHHHHHHHCCCCCCCCC--------CCCCC-CCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             98741553578-99988740100001221--------43323-4898999999997564798799854663
Q gi|254780401|r  226 LAFSGIADTEK-FFTTVRQLGALIEQCYS--------FGDHA-HLSDKKIAYLLDQAQQKGLILVTTAKDA  286 (338)
Q Consensus       226 ~afsGIa~P~~-F~~~L~~~g~~i~~~~~--------fpDHh-~ys~~dl~~i~~~a~~~~~~iiTTEKD~  286 (338)
                      +++.|-|...+ +....+++|++++-.-.        ..||+ .-+-.|.+.+.+.|++.+...||+|=.+
T Consensus        22 ilIlG~Gqla~~l~~aa~~lG~~~~~~d~~~~~pa~~~ad~~~~~~~~D~~~i~~~a~~~~~D~I~~e~e~   92 (108)
T 2dwc_A           22 ILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEA   92 (108)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99999789999999999987998999979898857774565897899999999999987399999968887


No 323
>>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* (A:1-178)
Probab=45.82  E-value=20  Score=16.13  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=25.0

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +.+||||  -+=.+|++.|.+.|+.+.++.|-
T Consensus         7 lVTGatG--~iG~~l~~~L~~~g~~v~~~~~~   36 (178)
T 2z1m_A            7 LITGIRG--QDGAYLAKLLLEKGYEVYGADRR   36 (178)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9978886--89999999999783989999799


No 324
>>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A (A:)
Probab=45.62  E-value=13  Score=17.52  Aligned_cols=82  Identities=13%  Similarity=0.147  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHCCCCEEEE-EECC----CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC-CCCC--CHHH-HHHHHCCC
Q ss_conf             999999985247315987-6045----787777558714567887704212332205763-4652--0122-56641024
Q gi|254780401|r   63 ALAIAKAVIDKNLKPGFL-SRGY----GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT-IVTS--DRKI-GVQMLLQE  133 (338)
Q Consensus        63 v~~l~~~l~~~g~~~~il-sRGY----g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv-~V~~--~R~~-~~~~~~~~  133 (338)
                      +..+.+.+.+ +-+..+| -|.=    .+...|...+.     ..+.-+....+.+.-++ ++|.  .|.. ++..+.+.
T Consensus         6 ~~e~~~~l~~-~~~~~iiDvR~~~e~~~~hipga~~~p-----~~~~~~~~~~~~~~~~iv~~c~~g~rs~~~a~~l~~~   79 (103)
T 3eme_A            6 TDELKNKLLE-SKPVQIVDVRTDEETAXGYIPNAKLIP-----XDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEAN   79 (103)
T ss_dssp             HHHHHHGGGS-SSCCEEEECSCHHHHTTCBCTTCEECC-----GGGGGGCGGGCCTTSEEEEECSSSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHC-CCCEEEEECCCHHHHHCCCCCCCCCCC-----CCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHC
T ss_conf             9999999867-998299988882563357258861212-----2000112211012345100579965499999999986


Q ss_pred             CCCEEEECCCCCCCCCC
Q ss_conf             57479971832234412
Q gi|254780401|r  134 GVDIIIMDDGFHSADLQ  150 (338)
Q Consensus       134 ~~diiIlDDGfQh~~l~  150 (338)
                      +.++.+||+|+..+.-.
T Consensus        80 G~~v~~l~GG~~aW~~~   96 (103)
T 3eme_A           80 GIDAVNVEGGXHAWGDE   96 (103)
T ss_dssp             TCEEEEETTHHHHHCSS
T ss_pred             CCCEEEECCHHHHHHHC
T ss_conf             99779977819999987


No 325
>>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} (A:1-178)
Probab=45.61  E-value=14  Score=17.27  Aligned_cols=36  Identities=25%  Similarity=0.151  Sum_probs=24.9

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             889889982300078887489999999985247315987604
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .|--++..|-   -|||||-++.++|..+.   .....++-|
T Consensus        44 ~~~g~Ll~Gp---PGtGKT~~a~a~A~~~~---~~~~~~~~~   79 (178)
T 1xwi_A           44 PWRGILLFGP---PGTGKSYLAKAVATEAN---NSTFFSISS   79 (178)
T ss_dssp             CCSEEEEESS---SSSCHHHHHHHHHHHTT---SCEEEEEEC
T ss_pred             CCCEEEEECC---CCCCHHHHHHHHHHHCC---CCCEEEEEH
T ss_conf             9980688798---99988999999998707---884246567


No 326
>>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* (A:165-385)
Probab=45.38  E-value=20  Score=16.14  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=18.9

Q ss_pred             CCCCCCHHHHHHHHHHH--HCCCCEEEEE
Q ss_conf             78887489999999985--2473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVI--DKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~--~~g~~~~ils   81 (338)
                      =|+|||=+...++..+.  ..|.++.|+.
T Consensus        23 tGsGKT~~~~~~~~~~l~~~~~~~vli~~   51 (221)
T 2o0j_A           23 RQLGKTTVVAIFLAHFVCFNKDKAVGILA   51 (221)
T ss_dssp             SSSCHHHHHHHHHHHHHHSSSSCEEEEEE
T ss_pred             CCCCEEEEHHHHHHHHHHHCCCCEEEEEE
T ss_conf             54441222388999998706663147860


No 327
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:1-166)
Probab=45.37  E-value=10  Score=18.16  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88998230007888748999999998524
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .++..|.-   |+|||.++.++|..+...
T Consensus        44 ~~ll~Gp~---G~GKt~~a~~~a~~l~~~   69 (166)
T 1sxj_B           44 HMIISGMP---GIGKTTSVHCLAHELLGR   69 (166)
T ss_dssp             CEEEECST---TSSHHHHHHHHHHHHHGG
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHHCCC
T ss_conf             69988949---998999999999986699


No 328
>>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} (A:)
Probab=45.18  E-value=20  Score=16.06  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      -|..+.+-.+|...+.+..+|+||+|
T Consensus        27 ~v~~a~~~~~al~~l~~~~~dliilD   52 (120)
T 2a9o_A           27 EVVTAFNGREALEQFEAEQPDIIILD   52 (120)
T ss_dssp             EEEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf             99998787999999983699789842


No 329
>>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* (A:1-271)
Probab=45.12  E-value=19  Score=16.24  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=18.8

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             2300078887489999999985247315987
Q gi|254780401|r   50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      |=+.-=|+|||-+...+++.... ++.+..+
T Consensus        75 ~I~a~~g~GKT~ll~~ia~~~~~-~~~v~~~  104 (271)
T 2obl_A           75 GIFAGSGVGKSTLLGMICNGASA-DIIVLAL  104 (271)
T ss_dssp             EEEECTTSSHHHHHHHHHHHSCC-SEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCC-CCEEEEE
T ss_conf             34688887688886542010248-8630046


No 330
>>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:1-111,A:185-343)
Probab=45.01  E-value=11  Score=18.06  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE----CCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HCCC---C
Q ss_conf             8998230007888748999999998524731598760----457877775587145678877042123322-0576---3
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR----GYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RRAV---T  117 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR----GYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~~p---v  117 (338)
                      |+.+|   .-|+|||-++.+||+.|...     +++-    -|.+-..+     +...+..+....+..+- ...+   .
T Consensus         5 I~I~G---ptGsGKStla~~LA~~l~~~-----~i~~Ds~q~y~~~~i~-----t~k~~~~e~~~~~~~~~~~~~~~~~~   71 (270)
T 3eph_A            5 IVIAG---TTGVGKSQLSIQLAQKFNGE-----VINSDSMQVYKDIPII-----TNKHPLQEREGIPHHVMNHVDWSEEY   71 (270)
T ss_dssp             EEEEE---CSSSSHHHHHHHHHHHHTEE-----EEECCTTTTBSSCTTT-----TTCCCGGGTTTCCEESCSCBCTTSCC
T ss_pred             EEEEC---CCCHHHHHHHHHHHHHCCCE-----EEECCHHHHCCCCCEE-----ECCCCHHHHHCCCEEEECCCCCCCCC
T ss_conf             99989---77045999999999987998-----9910388740999558-----78999999918996146133799872


Q ss_pred             CCCCCHHHHHHHHCC--CCCCEEEECCCCCCC--CCCC---EEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf             465201225664102--457479971832234--4123---069999618433566553761365210025566514544
Q gi|254780401|r  118 IVTSDRKIGVQMLLQ--EGVDIIIMDDGFHSA--DLQA---DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAIL  190 (338)
Q Consensus       118 ~V~~~R~~~~~~~~~--~~~diiIlDDGfQh~--~l~r---dl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi  190 (338)
                      -++.-+..+...+.+  ......|+.+|---+  .+-+   .++++++        +.--|..-|++-+.   +|+|..+
T Consensus        72 ~~~~f~~~a~~~~~~i~~~~~~~IivgGt~~yl~~~~~~l~~~~~l~~--------~l~~~r~~L~~ri~---~Rvd~M~  140 (270)
T 3eph_A           72 YSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRLKFDTLFL--------WLYSKPEPLFQRLD---DRVDDML  140 (270)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCSSEEEEE--------EEECCHHHHHHHHH---HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCC--------CCCCCHHHHHHHHH---HHHHHHH
T ss_conf             899999999986545540457328967986159988630222122222--------45788788999999---9999999


Q ss_pred             HCCCCHHH
Q ss_conf             20441245
Q gi|254780401|r  191 YVGNKKNV  198 (338)
Q Consensus       191 ~~~~~~~~  198 (338)
                      -.|--++.
T Consensus       141 ~~Gl~~Ev  148 (270)
T 3eph_A          141 ERGALQEI  148 (270)
T ss_dssp             HTTHHHHH
T ss_pred             HCCHHHHH
T ss_conf             77769999


No 331
>>2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis} (A:)
Probab=44.93  E-value=20  Score=16.03  Aligned_cols=36  Identities=11%  Similarity=0.064  Sum_probs=21.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf             898899823000788874899999999852473159
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG   78 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~   78 (338)
                      .+-||++||=...|.=..-..-+|++.|.+.|+++.
T Consensus         5 rv~ii~~GdEi~~g~~~d~n~~~l~~~l~~~G~~v~   40 (160)
T 2g4r_A            5 SARIVVVSSRAAAGVYTDDCGPIIAGWLEQHGFSSV   40 (160)
T ss_dssp             CEEEEEECHHHHTTSSCCCHHHHHHHHHHHTTCCCC
T ss_pred             EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf             799999468330488488469999999987798102


No 332
>>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:190-271)
Probab=44.91  E-value=20  Score=16.03  Aligned_cols=51  Identities=12%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             578999887401000012214332348989999999975647987998546
Q gi|254780401|r  234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK  284 (338)
Q Consensus       234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK  284 (338)
                      -+.|--..+.+|++.+..+....+..-|.+++.++.+.+++++...|-+|.
T Consensus         8 H~af~Yf~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~if~e~   58 (82)
T 2o1e_A            8 HTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEE   58 (82)
T ss_dssp             SCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSS
T ss_pred             CCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             213666887468447640235652221335799999876525886899948


No 333
>>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} (A:)
Probab=44.86  E-value=17  Score=16.55  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=21.1

Q ss_pred             HHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             7404643388988998230007888748999999998524
Q gi|254780401|r   34 MKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        34 ~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ++........+.|+.||+   +|+|||-    |...+...
T Consensus         9 ~~~~~~~~~~~kivivG~---~~vGKTs----Li~r~~~~   41 (183)
T 1moz_A            9 FDKLWGSNKELRILILGL---DGAGKTT----ILYRLQIG   41 (183)
T ss_dssp             HGGGTTCSSCEEEEEEEE---TTSSHHH----HHHHTCCS
T ss_pred             HHHHHCCCCEEEEEEECC---CCCCHHH----HHHHHHCC
T ss_conf             999717896799999999---9998899----99287459


No 334
>>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* (A:149-282)
Probab=44.83  E-value=17  Score=16.60  Aligned_cols=40  Identities=18%  Similarity=0.083  Sum_probs=30.9

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8898899823000788874899999999852473159876045
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      .+.|+|.   ++.||+|...+...+++.|.+.+....++..|=
T Consensus         7 ~~~~~V~---vs~Gs~~~~~~~~~i~~~l~~~~~~~~~~~~~~   46 (134)
T 3hbm_A            7 KKKYDFF---ICXGGTDIKNLSLQIASELPKTKIISIATSSSN   46 (134)
T ss_dssp             CCCEEEE---EECCSCCTTCHHHHHHHHSCTTSCEEEEECTTC
T ss_pred             CCCCCEE---EEEECCCCCHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf             2442226---554035530000112110122101210010120


No 335
>>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:1-208)
Probab=44.60  E-value=11  Score=18.02  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=22.7

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             8988998230007888748999999998524731598760
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +--|+..|-   -|||||-++.++|+.+.   .....++-
T Consensus        30 ~~~iLL~GP---pG~GKT~l~~~~a~~~~---~~~~~~~~   63 (208)
T 2fna_A           30 APITLVLGL---RRTGKSSIIKIGINELN---LPYIYLDL   63 (208)
T ss_dssp             SSEEEEEES---TTSSHHHHHHHHHHHHT---CCEEEEEG
T ss_pred             CCEEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEEE
T ss_conf             998999839---99979999999999879---97699997


No 336
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:273-289,A:381-393,A:607-763)
Probab=44.49  E-value=21  Score=15.99  Aligned_cols=21  Identities=5%  Similarity=-0.016  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899999999852473159876
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~ils   81 (338)
                      |-|....+.|++.|+++.++|
T Consensus        31 ~~v~~~I~~l~~agi~v~iiT   51 (187)
T 3ixz_A           31 ATVPDAVLKCRTAGIRVIMVT   51 (187)
T ss_pred             HHHHHHHHHHHHCCCEEEEEC
T ss_conf             669999999998899199988


No 337
>>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} (A:)
Probab=44.40  E-value=15  Score=16.90  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=18.0

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHH
Q ss_conf             898899823000788874899999999
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKA   69 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~   69 (338)
                      .+.|+.||+   +|+|||-++..++.-
T Consensus        23 ~~KIvlvG~---~~vGKTSli~r~~~~   46 (192)
T 2fg5_A           23 ELKVCLLGD---TGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEC---TTSSHHHHHHHHHHC
T ss_pred             EEEEEEECC---CCCCHHHHHHHHHHC
T ss_conf             879999997---991999999999849


No 338
>>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} (A:)
Probab=44.33  E-value=13  Score=17.36  Aligned_cols=82  Identities=13%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHCCCCEEEE-EEC---C-CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC-CCCCCHHH---HHHHHCCC
Q ss_conf             999999985247315987-604---5-787777558714567887704212332205763-46520122---56641024
Q gi|254780401|r   63 ALAIAKAVIDKNLKPGFL-SRG---Y-GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT-IVTSDRKI---GVQMLLQE  133 (338)
Q Consensus        63 v~~l~~~l~~~g~~~~il-sRG---Y-g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv-~V~~~R~~---~~~~~~~~  133 (338)
                      +..+.+.+++ +-++.+| -|-   | .+...+...+.     ..+.-+...-+.+..++ +.|..-.+   ++..+.+.
T Consensus         6 ~~~l~~~l~~-~~~~~iiDvR~~~e~~~~hi~ga~~ip-----~~~~~~~~~~~~~~~~iv~~c~~g~rs~~aa~~l~~~   79 (100)
T 3foj_A            6 VTELKEKILD-ANPVNIVDVRTDQETAXGIIPGAETIP-----XNSIPDNLNYFNDNETYYIICKAGGRSAQVVQYLEQN   79 (100)
T ss_dssp             HHHHHHGGGS-SSCCEEEECSCHHHHTTCBCTTCEECC-----GGGGGGCGGGSCTTSEEEEECSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHC-CCCEEEEECCCHHHHHCCCCCCCCCCC-----HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf             9999999876-998289979978999729378745484-----0344553123678862999879986999999999985


Q ss_pred             CCCEEEECCCCCCCCCC
Q ss_conf             57479971832234412
Q gi|254780401|r  134 GVDIIIMDDGFHSADLQ  150 (338)
Q Consensus       134 ~~diiIlDDGfQh~~l~  150 (338)
                      +.++.+|++|+|-+.-.
T Consensus        80 G~~v~~l~GG~~~W~~~   96 (100)
T 3foj_A           80 GVNAVNVEGGXDEFGDE   96 (100)
T ss_dssp             TCEEEEETTHHHHHCSS
T ss_pred             CCCEEEECCHHHHHHHC
T ss_conf             99879977869999985


No 339
>>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} (A:)
Probab=44.31  E-value=15  Score=17.03  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=17.3

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             889889982300078887489999999
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      -.+.|+.||+   +|+|||-++..+..
T Consensus         5 ~~~KiviiG~---~gvGKTsll~r~~~   28 (170)
T 1yzq_A            5 RKFKLVFLGE---QSVGKTSLITRFMY   28 (170)
T ss_dssp             --CEEEEEES---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             6789999994---99899999999985


No 340
>>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehydrogenase, reductase, NADP binding; 1.40A {Emericella nidulans} (A:)
Probab=44.27  E-value=21  Score=15.96  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=26.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||-  +=..|++.|.++|+.|.+++|.-..
T Consensus         9 lVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~   41 (352)
T 1xgk_A            9 AVVGATGR--QGASLIRVAAAVGHHVRAQVHSLKG   41 (352)
T ss_dssp             EEESTTSH--HHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf             99898708--9999999999687959999778530


No 341
>>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} (X:)
Probab=44.24  E-value=21  Score=15.96  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=27.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  =+=-+|++.|.++|+.+.++.|.-..
T Consensus         5 LVTGatG--fIG~~lv~~Ll~~g~~v~~~~~~~~~   37 (322)
T 2p4h_X            5 CVTGGTG--FLGSWIIKSLLENGYSVNTTIRADPE   37 (322)
T ss_dssp             EEESTTS--HHHHHHHHHHHHTTCEEEEECCCC--
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9989987--89999999999785989999878974


No 342
>>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} (A:)
Probab=44.15  E-value=14  Score=17.30  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             HHHCCHHHHHHHCCC-CCCCCCHHH---HHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf             770421233220576-346520122---566410245747997183223441
Q gi|254780401|r  102 YDVGDEPLLLARRAV-TIVTSDRKI---GVQMLLQEGVDIIIMDDGFHSADL  149 (338)
Q Consensus       102 ~~vGDEp~lla~~~p-v~V~~~R~~---~~~~~~~~~~diiIlDDGfQh~~l  149 (338)
                      .+.-+..-.+.+.-+ |++|..-..   ++..+.+.|.++.+||+|++.+.-
T Consensus        43 ~~l~~~~~~~~~~~~iv~~c~~g~~s~~a~~~L~~~G~~v~~l~GG~~~W~~   94 (108)
T 3gk5_A           43 SELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIE   94 (108)
T ss_dssp             HHHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf             1245665441014342221698549999999999849988998795999998


No 343
>>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCSG, PSI-2, midwest center for structural genomics; 2.00A {Thermoplasma acidophilum} (A:)
Probab=44.14  E-value=21  Score=15.95  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=19.2

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf             98899823000788874899999999852473159
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG   78 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~   78 (338)
                      +-||++|+=.+-|.=-.-.--+|++.|.+.|+.+.
T Consensus         6 v~ii~~GdEl~~G~~~D~n~~~l~~~l~~~G~~v~   40 (172)
T 3kbq_A            6 ASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVR   40 (172)
T ss_dssp             EEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCEE
T ss_conf             89999751151770466199999999998799177


No 344
>>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} (A:)
Probab=44.11  E-value=9.4  Score=18.42  Aligned_cols=35  Identities=29%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             9889982300078887489999999985247315987604
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .||=+|.|.+.|.+|.     ++|+++..+|++|.++++.
T Consensus        54 ~~VR~ItN~SsG~~G~-----~iAe~~~~~G~~Vi~~~g~   88 (313)
T 1p9o_A           54 RPVRFLDNFSSGRRGA-----TSAEAFLAAGYGVLFLYRA   88 (313)
T ss_dssp             SCSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEECCCCCHHHHH-----HHHHHHHHCCCEEEEEECC
T ss_conf             9833862788608899-----9999999869989999368


No 345
>>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* (A:)
Probab=43.65  E-value=8.3  Score=18.81  Aligned_cols=27  Identities=22%  Similarity=-0.018  Sum_probs=21.2

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-++.-++....+.+-.+.+++
T Consensus        29 pGsGKT~l~~q~~~~~~~~~~~~~~~~   55 (220)
T 2cvh_A           29 YASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             TTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             999899999999998535774267870


No 346
>>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} (A:)
Probab=43.62  E-value=11  Score=17.88  Aligned_cols=19  Identities=32%  Similarity=0.296  Sum_probs=15.6

Q ss_pred             CCCCCCHHHHHHHHHHHHC
Q ss_conf             7888748999999998524
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~   73 (338)
                      -|||||-++..|++.|...
T Consensus        13 ~GsGKtTla~~La~~l~~~   31 (186)
T 3cm0_A           13 PGAGKGTQASRLAQELGFK   31 (186)
T ss_dssp             TTSCHHHHHHHHHHHHTCE
T ss_pred             CCCCHHHHHHHHHHHHCCE
T ss_conf             9998799999999985987


No 347
>>1x1r_A RAS-related protein M-RAS; GTP-binding, signaling protein; HET: GDP; 1.30A {Mus musculus} (A:)
Probab=43.58  E-value=13  Score=17.55  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=17.3

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             33889889982300078887489999999
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ....+.|+.||+   +|.|||-++..++.
T Consensus        10 ~~~~~KivivGd---~~VGKTsLi~r~~~   35 (178)
T 1x1r_A           10 NLPTYKLVVVGD---GGVGKSALTIQFFQ   35 (178)
T ss_dssp             CCCEEEEEEECC---TTSSHHHHHHHHHH
T ss_pred             CCCEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             897179999999---99098999999973


No 348
>>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (E:1-192)
Probab=43.51  E-value=21  Score=15.89  Aligned_cols=40  Identities=18%  Similarity=0.281  Sum_probs=28.5

Q ss_pred             HHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             9740464338898899823000788874899999999852473
Q gi|254780401|r   33 LMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNL   75 (338)
Q Consensus        33 ~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~   75 (338)
                      ...+....+.+-.++-.|.=   |+|||.++..+|+.+.....
T Consensus        26 L~~~l~~~~~~~~lLl~Gp~---G~GKt~~A~~la~~l~~~~~   65 (192)
T 1sxj_E           26 LKSLSDQPRDLPHLLLYGPN---GTGKKTRCMALLESIFGPGV   65 (192)
T ss_dssp             HHTTTTCTTCCCCEEEECST---TSSHHHHHHTHHHHHSCTTC
T ss_pred             HHHHHHCCCCCCEEEEECCC---CCCHHHHHHHHHHHHCCCCC
T ss_conf             99999679987869888979---99899999999998659863


No 349
>>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A (A:1-258)
Probab=43.23  E-value=22  Score=15.86  Aligned_cols=28  Identities=14%  Similarity=0.092  Sum_probs=19.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             4898999999997564798799854663
Q gi|254780401|r  259 HLSDKKIAYLLDQAQQKGLILVTTAKDA  286 (338)
Q Consensus       259 ~ys~~dl~~i~~~a~~~~~~iiTTEKD~  286 (338)
                      .++...+....+.+.+.+.+++.||=-+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~P~~~~E~g~  222 (258)
T 2whl_A          195 GGDANTVRSNIDRVIDQDLALVIGEFGH  222 (258)
T ss_dssp             TSSHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             7857999999999986699889985577


No 350
>>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3; HDHD3, structural genomics, structural genomics consortium, SGC; 1.55A {Homo sapiens} (A:1-17,A:102-263)
Probab=43.17  E-value=16  Score=16.84  Aligned_cols=26  Identities=12%  Similarity=-0.009  Sum_probs=20.1

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             48999999998524731598760457
Q gi|254780401|r   60 TPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        60 TP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      .|=+..+.+.|+++|++++|+|-+..
T Consensus        24 ~pgv~e~L~~Lk~~G~~l~ivSn~~~   49 (179)
T 3k1z_A           24 LDGAEDTLRECRTRGLRLAVISNFDR   49 (179)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEEESCCT
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCCHH
T ss_conf             81699999999986992564145215


No 351
>>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} (A:)
Probab=43.07  E-value=22  Score=15.84  Aligned_cols=31  Identities=16%  Similarity=0.163  Sum_probs=25.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +.+||||  =+=.+|++.|.++|+.|.++.|.=
T Consensus         9 lVTGatG--fIG~~lv~~Ll~~G~~V~~~~r~~   39 (341)
T 3enk_A            9 LVTGGAG--YIGSHTAVELLAHGYDVVIADNLV   39 (341)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEECCCS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9974886--899999999997849799997888


No 352
>>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* (A:1-184)
Probab=42.84  E-value=22  Score=15.82  Aligned_cols=32  Identities=9%  Similarity=0.077  Sum_probs=22.3

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             0078887489999999985247315987604578
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      .+||||-  +--+|++.|.++|+.+.++.|.-.+
T Consensus        25 ItGatGf--iG~~lv~~L~~~g~~v~~~~~~~~~   56 (184)
T 2pzm_A           25 ITGGAGC--LGSNLIEHWLPQGHEILVIDNFATG   56 (184)
T ss_dssp             EETTTSH--HHHHHHHHHGGGTCEEEEEECCSSS
T ss_pred             EECCCCH--HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9888778--9999999999785989999788877


No 353
>>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} (A:347-572)
Probab=42.74  E-value=9.1  Score=18.52  Aligned_cols=95  Identities=18%  Similarity=0.128  Sum_probs=43.7

Q ss_pred             ECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCC-----CCCCEEEECCCCCHHHHCCHHH---HHH---------HCC
Q ss_conf             07888748999999998524-73159876045787-----7775587145678877042123---322---------057
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRK-----SRISFRVDLEKHSAYDVGDEPL---LLA---------RRA  115 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~-----~~~~~~v~~~~~~~~~vGDEp~---lla---------~~~  115 (338)
                      --|+|||-+.-.|+...+.- |--..=++=+|...     ..+...-....-......+.-.   ++.         ++.
T Consensus        44 ~NGaGKSTllk~i~Gl~~p~~G~i~~~~~i~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  123 (226)
T 3bk7_A           44 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV  123 (226)
T ss_dssp             CTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG
T ss_pred             CCCCCCCCHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH
T ss_conf             87765550435642886688784023574000112233051210566555404100214589999999859915532662


Q ss_pred             CCCCCCCHHH-HHHHHCCCCCCEEEECCCCCCCC
Q ss_conf             6346520122-56641024574799718322344
Q gi|254780401|r  116 VTIVTSDRKI-GVQMLLQEGVDIIIMDDGFHSAD  148 (338)
Q Consensus       116 pv~V~~~R~~-~~~~~~~~~~diiIlDDGfQh~~  148 (338)
                      -..-+..|.+ ++..+.-.+++++|||.-..+.-
T Consensus       124 ~~LSGGekqRv~iAral~~~p~illlDEPts~LD  157 (226)
T 3bk7_A          124 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD  157 (226)
T ss_dssp             GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             6489999999999999964999899979987789


No 354
>>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} (A:)
Probab=42.47  E-value=9.8  Score=18.29  Aligned_cols=16  Identities=31%  Similarity=0.526  Sum_probs=12.3

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7888748999999998
Q gi|254780401|r   55 GGTGKTPTALAIAKAV   70 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l   70 (338)
                      -|+|||-++..|++.+
T Consensus        11 ~GsGKTT~a~~L~~~l   26 (189)
T 2bdt_A           11 AGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             TTSSHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9989899999999981


No 355
>>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} (A:)
Probab=42.43  E-value=14  Score=17.16  Aligned_cols=28  Identities=25%  Similarity=0.535  Sum_probs=18.4

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHH
Q ss_conf             4338898899823000788874899999999
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKA   69 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~   69 (338)
                      +....+.|+.||+   +|.|||-++..++.-
T Consensus         5 ~~~~~~KiviiGd---~~vGKTsll~r~~~~   32 (181)
T 2fn4_A            5 PPSETHKLVVVGG---GGVGKSALTIQFIQS   32 (181)
T ss_dssp             CSSCEEEEEEEEC---TTSSHHHHHHHHHHS
T ss_pred             CCCCCEEEEEECC---CCCCHHHHHHHHHHC
T ss_conf             9887458999997---993989999999729


No 356
>>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} (A:)
Probab=42.43  E-value=9.9  Score=18.28  Aligned_cols=25  Identities=36%  Similarity=0.422  Sum_probs=17.8

Q ss_pred             EEEE-CCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8998-230007888748999999998524
Q gi|254780401|r   46 VICV-GGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      +|+| |.   -|+|||-++..|++.|...
T Consensus        17 ~I~i~G~---~GsGKtTla~~La~~l~~~   42 (203)
T 1ukz_A           17 VIFVLGG---PGAGKGTQCEKLVKDYSFV   42 (203)
T ss_dssp             EEEEECS---TTSSHHHHHHHHHHHSSCE
T ss_pred             EEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             8999899---9998799999999985991


No 357
>>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} (A:94-285)
Probab=42.43  E-value=22  Score=15.77  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=24.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +=-=|+|||-+...|+..+....-++.+...
T Consensus        13 iGpsGsGKSTll~~l~g~~~p~~G~v~~~~~   43 (192)
T 3dm5_A           13 VGIQGSGKTTTVAKLARYFQKRGYKVGVVCS   43 (192)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             2466666406889999999963982689973


No 358
>>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} (A:1-354)
Probab=42.42  E-value=22  Score=15.77  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=25.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|.=
T Consensus        15 LVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~   45 (354)
T 1z45_A           15 LVTGGAG--YIGSHTVVELIENGYDCVVADNLS   45 (354)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9978971--899999999997869699998888


No 359
>>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} (A:)
Probab=42.40  E-value=12  Score=17.67  Aligned_cols=19  Identities=26%  Similarity=0.443  Sum_probs=15.5

Q ss_pred             CCCCCCHHHHHHHHHHHHC
Q ss_conf             7888748999999998524
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~   73 (338)
                      -|+|||-++..|++.|...
T Consensus        17 ~GsGKSTla~~La~~l~~~   35 (175)
T 1knq_A           17 SGSGKSAVASEVAHQLHAA   35 (175)
T ss_dssp             TTSCHHHHHHHHHHHHTCE
T ss_pred             CCCCHHHHHHHHHHHHCCC
T ss_conf             9989899999999996988


No 360
>>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} (A:)
Probab=42.26  E-value=22  Score=15.76  Aligned_cols=34  Identities=18%  Similarity=-0.056  Sum_probs=27.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             000788874899999999852473159876045787
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|.....
T Consensus        13 LVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~~~   46 (357)
T 1rkx_A           13 FVTGHTG--FKGGWLSLWLQTMGATVKGYSLTAPTV   46 (357)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             9968997--899999999997799899997899862


No 361
>>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A (A:27-187)
Probab=42.21  E-value=22  Score=15.75  Aligned_cols=27  Identities=15%  Similarity=0.054  Sum_probs=18.9

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             748999999998524731598760457
Q gi|254780401|r   59 KTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        59 KTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      -.|=+..+.+.|+++|++++++|.|..
T Consensus        43 ~~pg~~e~l~~L~~~g~~i~i~T~~~~   69 (161)
T 2wm8_A           43 LYPEVPEVLKRLQSLGVPGAAASRTSE   69 (161)
T ss_dssp             CCTTHHHHHHHHHHHTCCEEEEECCSC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf             475599999999988977995067854


No 362
>>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} (A:1-131,A:180-233)
Probab=42.18  E-value=12  Score=17.60  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             988998230007888748999999998524
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .-|+.+|.   -|+|||-++..|++.|.-.
T Consensus        17 ~~Ivi~G~---~GsGKTTia~~La~~l~~~   43 (185)
T 1ak2_A           17 VRAVLLGP---PGAGKGTQAPKLAKNFCVC   43 (185)
T ss_dssp             CEEEEECC---TTSSHHHHHHHHHHHHTCE
T ss_pred             CEEEEECC---CCCCHHHHHHHHHHHHCCE
T ss_conf             47999899---9998799999999986983


No 363
>>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} (A:)
Probab=42.10  E-value=22  Score=15.74  Aligned_cols=28  Identities=7%  Similarity=0.100  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf             6346520122566410245747997183
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMDDG  143 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlDDG  143 (338)
                      -|.+..+=.+|...+.+..+|+||+|-.
T Consensus        30 ~v~~a~~~~~al~~l~~~~~dliilD~~   57 (136)
T 2qzj_A           30 SIDLAYNCEEAIGKIFSNKYDLIFLEII   57 (136)
T ss_dssp             EEEEESSHHHHHHHHHHCCCSEEEEESE
T ss_pred             EEEEECCHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999824889999860669868986213


No 364
>>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} (B:)
Probab=42.03  E-value=8.8  Score=18.64  Aligned_cols=35  Identities=17%  Similarity=0.016  Sum_probs=25.1

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+..|..   |+|||-++..|++.|....+.+..+.+-
T Consensus        14 I~i~G~~---GsGKsT~a~~La~~l~~~~~~~~~~~~~   48 (202)
T 3ch4_B           14 LLFSGKR---KSGKDFVTEALQSRLGADVCAVLRLSGP   48 (202)
T ss_dssp             EEEEECT---TSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred             EEEECCC---CCCHHHHHHHHHHHCCCCCEEEEEECHH
T ss_conf             9998989---9899999999998549984788650358


No 365
>>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} (A:)
Probab=41.99  E-value=12  Score=17.60  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=16.6

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             89982300078887489999999985
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      |+..|-   -|+|||-++..|++.|-
T Consensus         7 I~i~G~---~GsGKsTia~~La~~lg   29 (175)
T 1via_A            7 IVFIGF---XGSGKSTLARALAKDLD   29 (175)
T ss_dssp             EEEECC---TTSCHHHHHHHHHHHHT
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf             999858---99989999999999849


No 366
>>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} (A:)
Probab=41.93  E-value=18  Score=16.39  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=18.9

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             9889982300078887489999999985247315
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      +.|+.||+   +|+|||-++..++.---...+.+
T Consensus         6 ~KivivGd---~~VGKTsLi~r~~~~~f~~~~~~   36 (199)
T 2f9l_A            6 FKVVLIGD---SGVGKSNLLSRFTRNEFNLESKS   36 (199)
T ss_dssp             EEEEEESS---TTSSHHHHHHHHHHSCCCC---C
T ss_pred             EEEEEECC---CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             89999999---99098999999984989887588


No 367
>>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} (A:)
Probab=41.84  E-value=13  Score=17.53  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=18.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             8998230007888748999999998524731
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      |+..|.   =|+|||-++..|++.|....+.
T Consensus         6 I~i~G~---~GsGKsTla~~La~~l~~~~~~   33 (196)
T 1tev_A            6 VFVLGG---PGAGKGTQCARIVEKYGYTHLS   33 (196)
T ss_dssp             EEEECC---TTSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHCCCEEC
T ss_conf             999899---9999899999999986995760


No 368
>>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus} (A:)
Probab=41.81  E-value=12  Score=17.56  Aligned_cols=17  Identities=12%  Similarity=0.292  Sum_probs=14.1

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             78887489999999985
Q gi|254780401|r   55 GGTGKTPTALAIAKAVI   71 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~   71 (338)
                      -|+|||-++..|++.|.
T Consensus         9 ~GsGKTTla~~La~~l~   25 (168)
T 2pt5_A            9 XCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             TTSCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHC
T ss_conf             99988999999999839


No 369
>>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} (A:1-200)
Probab=41.80  E-value=11  Score=17.95  Aligned_cols=29  Identities=34%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             CCEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             230007--88874899999999852473159876
Q gi|254780401|r   50 GGFVMG--GTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        50 GNitvG--GtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |=+-.|  |||||-++.++|+.+.   .....++
T Consensus        66 giLl~GppGtGKT~la~ala~~~~---~~~~~i~   96 (200)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEAR---VPFITAS   96 (200)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf             589889899858999999997518---9469977


No 370
>>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} (A:1-114)
Probab=41.68  E-value=11  Score=18.09  Aligned_cols=24  Identities=21%  Similarity=0.080  Sum_probs=16.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      =|+|||-++-.|++.+.    .+.++|.
T Consensus        11 pGsGKTT~a~~l~~~l~----~~~~~~~   34 (114)
T 1ltq_A           11 PGSGKSTWAREFIAKNP----GFYNINR   34 (114)
T ss_dssp             TTSSHHHHHHHHHHHST----TEEEECH
T ss_pred             CCCCHHHHHHHHHHHCC----CCEEECC
T ss_conf             99978999999998489----9899820


No 371
>>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} (A:)
Probab=41.67  E-value=23  Score=15.70  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +.+||||.  +=.+|++.|.++|+++.+++|.-
T Consensus        25 lItGatG~--iG~~l~~~L~~~~~~v~~~~r~~   55 (236)
T 3e8x_A           25 LVVGANGK--VARYLLSELKNKGHEPVAXVRNE   55 (236)
T ss_dssp             EEETTTSH--HHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCH
T ss_conf             99999778--99999999997889899995795


No 372
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:1-168)
Probab=41.65  E-value=13  Score=17.47  Aligned_cols=25  Identities=40%  Similarity=0.632  Sum_probs=18.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8998230007888748999999998524
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ++-.|-   -|+|||.++.++|+.+...
T Consensus        49 ~ll~Gp---pG~GKt~~a~~~a~~l~~~   73 (168)
T 1sxj_C           49 LLFYGP---PGTGKTSTIVALAREIYGK   73 (168)
T ss_dssp             EEEECS---SSSSHHHHHHHHHHHHHTT
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             998897---9999999999999874045


No 373
>>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} (A:)
Probab=41.53  E-value=23  Score=15.68  Aligned_cols=94  Identities=18%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             CCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCCCCCCHHHHHHH
Q ss_conf             78887489-99999998524731598760457877775587145678877042123322057----63465201225664
Q gi|254780401|r   55 GGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTIVTSDRKIGVQM  129 (338)
Q Consensus        55 GGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~V~~~R~~~~~~  129 (338)
                      =|||||-. ++-+...+.........            ..+.+....+..+-.+...++...    .++++......-..
T Consensus        89 TGsGKTlayllp~l~~l~~~~~~~~~------------~~~~p~~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (249)
T 3ber_A           89 TGSGKTGAFALPILNALLETPQRLFA------------LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL  156 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSSCE------------EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH
T ss_pred             CCCCCCCCCHHHHHCEECCCCCCCCC------------CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHH
T ss_conf             76555311001000000135765454------------211775555555556653102446753001101101268999


Q ss_pred             HCCCCCCEEEE-CCCCCC-----C-CCCCEEEEEEECC
Q ss_conf             10245747997-183223-----4-4123069999618
Q gi|254780401|r  130 LLQEGVDIIIM-DDGFHS-----A-DLQADFSLIVVNS  160 (338)
Q Consensus       130 ~~~~~~diiIl-DDGfQh-----~-~l~rdl~Ivl~d~  160 (338)
                      ..+.+++++|. --++.+     . ...+++..+++|-
T Consensus       157 ~l~~~~~iii~t~~~~~~~~~~~~~~~~~~ik~lVlDE  194 (249)
T 3ber_A          157 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE  194 (249)
T ss_dssp             HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred             HHHCCCCEEEECCCCCEECCCCCCCCCHHHCEEEEECC
T ss_conf             98549976997897320024222442530011897444


No 374
>>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} (A:)
Probab=41.38  E-value=12  Score=17.56  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=16.9

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|.|||-++..++.
T Consensus        13 ~~~~KivivGd---~~VGKTSli~r~~~   37 (179)
T 1z0f_A           13 SYIFKYIIIGD---MGVGKSCLLHQFTE   37 (179)
T ss_dssp             SEEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             76789999999---99198999999972


No 375
>>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* (B:)
Probab=41.11  E-value=12  Score=17.76  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=17.8

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|+|||-++..+++
T Consensus        10 ~~~~KivivG~---~~vGKTSli~r~~~   34 (181)
T 2efe_B           10 SINAKLVLLGD---VGAGKSSLVLRFVK   34 (181)
T ss_dssp             CEEEEEEEECC---TTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             40549999899---99699999999985


No 376
>>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} (A:)
Probab=41.09  E-value=11  Score=17.82  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=18.6

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             899823000788874899999999852473
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNL   75 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~   75 (338)
                      |+..|.   -|+|||-++..|++.+....+
T Consensus         6 I~i~G~---~GsGKtTla~~La~~l~~~~i   32 (178)
T 1qhx_A            6 IILNGG---SSAGKSGIVRCLQSVLPEPWL   32 (178)
T ss_dssp             EEEECC---TTSSHHHHHHHHHHHSSSCEE
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHCCCEE
T ss_conf             999899---999989999999998489979


No 377
>>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} (A:1-108)
Probab=41.06  E-value=23  Score=15.63  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=12.5

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |..+.+=.+|...+.+..+|+||+|
T Consensus        30 v~~a~~~~~al~~l~~~~~dliilD   54 (108)
T 3c3m_A           30 PITAFSGEECLEALNATPPDLVLLD   54 (108)
T ss_dssp             EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred             EEEECCCHHHHHHHHHHCCCCEEEC
T ss_conf             9983353118998864233204411


No 378
>>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} (A:)
Probab=41.00  E-value=13  Score=17.38  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=17.5

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|.|||-++..++.
T Consensus        19 ~~~~KiviiGd---~gVGKTsli~r~~~   43 (191)
T 2a5j_A           19 SYLFKYIIIGD---TGVGKSCLLLQFTD   43 (191)
T ss_dssp             CEEEEEEEESS---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             65479999999---99698999999971


No 379
>>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A (A:)
Probab=40.79  E-value=13  Score=17.35  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=18.5

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             988998230007888748999999998524
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .-|+.+|.   -|+|||-++..|++.|.-.
T Consensus        10 ~~I~i~G~---~GsGKsTla~~La~~l~~~   36 (196)
T 2c95_A           10 NIIFVVGG---PGSGKGTQCEKIVQKYGYT   36 (196)
T ss_dssp             CEEEEEEC---TTSSHHHHHHHHHHHHCCE
T ss_pred             CEEEEECC---CCCCHHHHHHHHHHHHCCE
T ss_conf             58999899---9998799999999985984


No 380
>>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} (A:1-218)
Probab=40.77  E-value=12  Score=17.56  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             898899823000788874899999999852
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      ..||+-.|-=   |||||-++..+++.+..
T Consensus        45 ~~~iLl~G~p---GtGKt~lAr~i~~~l~~   71 (218)
T 1g8p_A           45 IGGVLVFGDR---GTGKSTAVRALAALLPE   71 (218)
T ss_dssp             GCCEEEECCG---GGCTTHHHHHHHHHSCC
T ss_pred             CCEEEEECCC---CCCHHHHHHHHHHHCCC
T ss_conf             9718997899---95699999999986676


No 381
>>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus} (A:1-185,A:283-301)
Probab=40.72  E-value=12  Score=17.76  Aligned_cols=32  Identities=31%  Similarity=0.191  Sum_probs=21.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      --|+-.|-   -|||||=++.++|+.+.   ..+..++
T Consensus        50 kgiLl~GP---pGTGKT~la~ala~~~~---~~~~~i~   81 (204)
T 3cf0_A           50 KGVLFYGP---PGCGKTLLAKAIANECQ---ANFISIK   81 (204)
T ss_dssp             SEEEEECS---SSSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred             CEEEEECC---CCCCEEHHHHHHHHHHC---CCEEEEE
T ss_conf             63687679---99960111343244518---7279988


No 382
>>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} (B:)
Probab=40.60  E-value=13  Score=17.55  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=17.2

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   ||.|||-++..++.
T Consensus        11 ~~~~KiviiGd---~gVGKTsLi~rf~~   35 (223)
T 3cpj_B           11 DLLFKIVLIGD---SGVGKSNLLSRFTK   35 (223)
T ss_dssp             CEEEEEEEESC---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             66889999999---99299999999971


No 383
>>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* (A:1-145,A:250-415)
Probab=40.58  E-value=17  Score=16.58  Aligned_cols=24  Identities=33%  Similarity=0.331  Sum_probs=18.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||=+.+..+.   +.|.++.|++
T Consensus        41 tGsGKT~va~~~i~---~~~~~vlilv   64 (311)
T 2d7d_A           41 TGTGKTFTVSNLIK---EVNKPTLVIA   64 (311)
T ss_dssp             TTSCHHHHHHHHHH---HHCCCEEEEC
T ss_pred             CCCHHHHHHHHHHH---HHCCCEEEEC
T ss_conf             87499999999999---8499989991


No 384
>>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} (A:1-209)
Probab=40.58  E-value=18  Score=16.37  Aligned_cols=92  Identities=13%  Similarity=-0.040  Sum_probs=54.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH
Q ss_conf             78887489999999985247315987604578777755871456788770421233220576----34652012256641
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML  130 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~  130 (338)
                      =|+|||-.-  ..-.+. .+.+..|++              +....+.++.++...+....+    +..+..........
T Consensus        49 TGsGKT~~~--~~~~~~-~~~~~lii~--------------Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (209)
T 1oyw_A           49 TGGGKSLCY--QIPALL-LNGLTVVVS--------------PLISLXKDQVDQLQANGVAAACLNSTQTREQQLEVXTGC  111 (209)
T ss_dssp             CHHHHHHHH--HHHHHH-SSSEEEEEC--------------SCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHH--HHHHHH-HCCCEEEEC--------------CHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHH
T ss_conf             984699999--999998-089689988--------------769999999999998497599995888799999999741


Q ss_pred             CCCCCCEEEECCC-----CC-CCCCCCEEEEEEECCCCC
Q ss_conf             0245747997183-----22-344123069999618433
Q gi|254780401|r  131 LQEGVDIIIMDDG-----FH-SADLQADFSLIVVNSHRG  163 (338)
Q Consensus       131 ~~~~~diiIlDDG-----fQ-h~~l~rdl~Ivl~d~~~~  163 (338)
                      ...++++++.--|     .+ .....+.+..+++|--+-
T Consensus       112 ~~~~~~ivi~tp~~l~~~~~~~~~~l~~i~~vViDEad~  150 (209)
T 1oyw_A          112 RTGQIRLLYIAPERLXLDNFLEHLAHWNPVLLAVDEAHC  150 (209)
T ss_dssp             HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred             HCCCCEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCEE
T ss_conf             238851886173887655555554303425640454301


No 385
>>2zkl_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, isomerase; 2.61A {Staphylococcus aureus} (A:1-130)
Probab=40.42  E-value=24  Score=15.56  Aligned_cols=32  Identities=9%  Similarity=0.067  Sum_probs=26.0

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +.+||||..  =.+|++.|.++|+.+.+.+|--.
T Consensus         4 lVtGasGfi--G~~lv~~L~~~g~~v~~~~~~~~   35 (130)
T 2zkl_A            4 VITGAKGFV--GKNLKADLTSTTDHHIFEVHRQT   35 (130)
T ss_dssp             EEETTTSHH--HHHHHHHHHHHCCCEEEEECTTC
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCC
T ss_conf             999999779--99999999857994999967989


No 386
>>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} (A:)
Probab=40.41  E-value=14  Score=17.28  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=17.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8998230007888748999999998524
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      |+.+|.   -|+|||-++..|++.|...
T Consensus        23 I~i~G~---~GsGKsTla~~La~~l~~~   47 (201)
T 2cdn_A           23 VLLLGP---PGAGKGTQAVKLAEKLGIP   47 (201)
T ss_dssp             EEEECC---TTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHCCE
T ss_conf             999899---9999899999999997990


No 387
>>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomics, PSI, protein structure initiative; HET: G1P; 2.00A {Escherichia coli K12} (A:1-16,A:94-206)
Probab=40.36  E-value=24  Score=15.56  Aligned_cols=86  Identities=16%  Similarity=0.103  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECC-------CCCHHHHC-----CHHHHHHH-C---C--CCCCCC
Q ss_conf             48999999998524731598760457877775587145-------67887704-----21233220-5---7--634652
Q gi|254780401|r   60 TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLE-------KHSAYDVG-----DEPLLLAR-R---A--VTIVTS  121 (338)
Q Consensus        60 TP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~-------~~~~~~vG-----DEp~lla~-~---~--pv~V~~  121 (338)
                      .|=+..+.+.|+++|++++++|.++.........-...       --+..+++     .|.+..+. .   .  .+++-.
T Consensus        16 ~Pgv~e~L~~L~~~g~~i~i~Tn~~~~~~~~~~~~~~gl~~~fd~v~~~~~~~~~KP~~~~~~~~~~~~g~~p~~~i~Ig   95 (129)
T 2b0c_A           16 NPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFD   95 (129)
T ss_dssp             THHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             92067899999865982676316208999998752225354543898721355420267899999997398921089990


Q ss_pred             CHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf             012256641024574799718322
Q gi|254780401|r  122 DRKIGVQMLLQEGVDIIIMDDGFH  145 (338)
Q Consensus       122 ~R~~~~~~~~~~~~diiIlDDGfQ  145 (338)
                      |....+..+.+.|...|...+|-+
T Consensus        96 D~~~di~~a~~~Gi~~i~v~~~~~  119 (129)
T 2b0c_A           96 DNADNIEGANQLGITSILVKDKTT  119 (129)
T ss_dssp             SCHHHHHHHHTTTCEEEECCSTTH
T ss_pred             CCHHHHHHHHHCCCEEEEECCCCC
T ss_conf             898889999986998999999652


No 388
>>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A* (A:1-184)
Probab=40.28  E-value=14  Score=17.26  Aligned_cols=19  Identities=42%  Similarity=0.312  Sum_probs=16.2

Q ss_pred             CCCCCCHHHHHHHHHHHHC
Q ss_conf             7888748999999998524
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~   73 (338)
                      -|||||=++.++|..+...
T Consensus        53 pGtGKT~la~ala~~~~~~   71 (184)
T 2r62_A           53 PGTGKTLLAKAVAGEAHVP   71 (184)
T ss_dssp             SCSSHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHCCCC
T ss_conf             9987016999999874998


No 389
>>2o2x_A Hypothetical protein; NP_103874.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.50A {Mesorhizobium loti} (A:)
Probab=40.27  E-value=24  Score=15.55  Aligned_cols=76  Identities=13%  Similarity=0.113  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEECHHHHHHCCCCCCCCHHHHCCEEEEE
Q ss_conf             155357899988740100001221433234898999999997564798--799854663438233344111220517887
Q gi|254780401|r  230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL--ILVTTAKDAMRLHKRPGRAEEIFAKSMVIE  307 (338)
Q Consensus       230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~--~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~  307 (338)
                      .--+|+.|...++.+|+.....+..-|+    ..|+..    |++.+.  ..|.+..+...-             .....
T Consensus       136 ~Kp~p~~~~~~~~~lg~~p~~~v~vgDs----~~Di~a----A~~~G~~~i~v~~~~~~~~~-------------l~~~~  194 (218)
T 2o2x_A          136 RKPNPGXLVEAGKRLALDLQRSLIVGDK----LADXQA----GKRAGLAQGWLVDGEAAVQP-------------GFAIR  194 (218)
T ss_dssp             STTSCHHHHHHHHHHTCCGGGCEEEESS----HHHHHH----HHHTTCSEEEEETCCCEEET-------------TEEEE
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEECCC----HHHHHH----HHHCCCCEEEEECCCCCCCC-------------CCCCC
T ss_conf             3541268999998738994103785796----888999----99879948999379865677-------------75456


Q ss_pred             EEEEECCHHHHHHHHHHHH
Q ss_conf             6989578789999999999
Q gi|254780401|r  308 VDIVFENPDDLTNLVEMTV  326 (338)
Q Consensus       308 i~~~~~~~~~l~~~l~~~i  326 (338)
                      ....+++-.+|...|++..
T Consensus       195 ~~~~i~~l~el~~~l~~~~  213 (218)
T 2o2x_A          195 PLRDSSELGDLLAAIETLG  213 (218)
T ss_dssp             EESSHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHH
T ss_conf             7641407776999999998


No 390
>>1o51_A Hypothetical protein TM0021; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: ADP; 2.50A {Thermotoga maritima} (A:)
Probab=40.17  E-value=23  Score=15.66  Aligned_cols=28  Identities=18%  Similarity=0.115  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             7489999999985247315987604578
Q gi|254780401|r   59 KTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        59 KTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      .-|+..||++.+++.|..=+.+-||.-|
T Consensus        28 g~pl~~~il~~~~~~Gi~GaTv~rgi~G   55 (114)
T 1o51_A           28 GKPLFEYLVKRAYELGXKGVTVYRGIXG   55 (114)
T ss_dssp             TEEHHHHHHHHHHHTTCSCCEEEECSCC
T ss_pred             CEEHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             5399999999999879981799930255


No 391
>>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* (A:)
Probab=40.16  E-value=14  Score=17.20  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=16.4

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.||.||+   +|.|||-++..+++
T Consensus         9 ~~~~KivliGd---~gVGKTsll~rf~~   33 (195)
T 3bc1_A            9 DYLIKFLALGD---SGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             76899999998---99598999999983


No 392
>>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} (A:)
Probab=39.98  E-value=12  Score=17.68  Aligned_cols=16  Identities=25%  Similarity=0.436  Sum_probs=13.0

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7888748999999998
Q gi|254780401|r   55 GGTGKTPTALAIAKAV   70 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l   70 (338)
                      -|+|||-++..|++.+
T Consensus        13 ~GsGKsTla~~La~~~   28 (173)
T 1kag_A           13 MGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             TTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9998899999999995


No 393
>>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} (A:)
Probab=39.92  E-value=22  Score=15.77  Aligned_cols=29  Identities=17%  Similarity=0.211  Sum_probs=19.0

Q ss_pred             HCCCCCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             04643388988998230007888748999999
Q gi|254780401|r   36 RGQRLHAPIPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        36 ~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .......++.|+.||+   +|+|||-++..+.
T Consensus         9 ~~~~~~~~~kivivG~---~~vGKTSli~r~~   37 (181)
T 1fzq_A            9 LKSAPDQEVRILLLGL---DNAGKTTLLKQLA   37 (181)
T ss_dssp             CSSCCSSCEEEEEEES---TTSSHHHHHHHHC
T ss_pred             CCCCCCCCCEEEEECC---CCCCHHHHHHHHH
T ss_conf             3026888668999999---9989999999996


No 394
>>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:1-99,A:196-225)
Probab=39.91  E-value=16  Score=16.79  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=27.0

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEEC------CCCCC----CCCCCEEEEEEECCC
Q ss_conf             465201225664102457479971------83223----441230699996184
Q gi|254780401|r  118 IVTSDRKIGVQMLLQEGVDIIIMD------DGFHS----ADLQADFSLIVVNSH  161 (338)
Q Consensus       118 ~V~~~R~~~~~~~~~~~~diiIlD------DGfQh----~~l~rdl~Ivl~d~~  161 (338)
                      ..+.|=.++.+.+.+..+|+||+|      ||++-    ++...+..|+++.+.
T Consensus        31 ~~a~~g~eal~~i~~~~pDiiilDi~LP~~dGleli~~Ik~~~p~~~IIvlS~~   84 (129)
T 3c3w_A           31 GEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY   84 (129)
T ss_dssp             EEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS
T ss_pred             EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             997999999999986699879982568999963143322220456444444345


No 395
>>3h0k_A UPF0200 protein SSO1041; adenylate, kinase, structural genomics, PSI-2, protein structure initiative; 3.25A {Sulfolobus solfataricus} (A:)
Probab=39.76  E-value=15  Score=16.91  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=13.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf             0788874899999999852473159
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPG   78 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~   78 (338)
                      .-|||||-    +++.|.+.|+.+.
T Consensus         8 ~~GsGKsT----~a~~L~~~~~~~~   28 (178)
T 3h0k_A            8 MPGSGKSE----FAKLLKERGAKVI   28 (178)
T ss_dssp             CTTSCHHH----HHHHHHHTSCEEE
T ss_pred             CCCCCHHH----HHHHHHHCCCCEE
T ss_conf             99999999----9999998799499


No 396
>>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} (A:)
Probab=39.76  E-value=12  Score=17.75  Aligned_cols=32  Identities=13%  Similarity=0.119  Sum_probs=22.2

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             43388988998230007888748999999998524
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ....+.-++-.|   -||||||-+...|++.+-..
T Consensus        54 ~~~~~~~~~l~G---~~g~GKstl~~~l~~~~g~~   85 (212)
T 1tue_A           54 GTPKKNCLVFCG---PANTGKSYFGMSFIHFIQGA   85 (212)
T ss_dssp             TCTTCSEEEEES---CGGGCHHHHHHHHHHHHTCE
T ss_pred             CCCCCCEEEEEC---CCCCCHHHHHHHHHHHHCCE
T ss_conf             898751899988---99855889999999984772


No 397
>>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:1-125)
Probab=39.74  E-value=24  Score=15.49  Aligned_cols=20  Identities=5%  Similarity=-0.125  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEE
Q ss_conf             89999999985247315987
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~il   80 (338)
                      +....+++.+++.|+.+.++
T Consensus        21 ~~~~~l~~~a~~~g~~~~~~   40 (125)
T 1kjq_A           21 ELGKEVAIECQRLGVEVIAV   40 (125)
T ss_dssp             HHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEE
T ss_conf             99999999999879989999


No 398
>>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1, structural genomics, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} (A:1-15,A:86-207)
Probab=39.72  E-value=23  Score=15.70  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=52.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHC
Q ss_conf             0788874899999999852473159876045787777558714567887704212332205--76346520122566410
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLL  131 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~  131 (338)
                      ..||==.|-+.-+.+.|+++|++++|+|.++..-..          .....|-.++.-.-.  ..+...+...+....+.
T Consensus        11 ~~~~~l~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~----------~l~~~~l~~~f~~i~~s~~~~~~Kp~p~~~~~~l   80 (137)
T 2go7_A           11 LDGTLLXPGAREVLAWADESGIQQFIYTHKGNNAFT----------ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLL   80 (137)
T ss_dssp             TBTTTECTTHHHHHHHHHHTTCEEEEECSSCTHHHH----------HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCCHHHHCCHHHHHHH----------HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             899776625777653111222210332000577777----------6642012212222223322222102578789999


Q ss_pred             -CC---CCCEEEECCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             -24---574799718322344123069999618433
Q gi|254780401|r  132 -QE---GVDIIIMDDGFHSADLQADFSLIVVNSHRG  163 (338)
Q Consensus       132 -~~---~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~  163 (338)
                       +.   ..+++..+|...+....+...+-.+-..++
T Consensus        81 ~~~~~~~~~~l~IgD~~~Di~aA~~aG~~~i~v~~~  116 (137)
T 2go7_A           81 DKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLES  116 (137)
T ss_dssp             HHHTCCGGGEEEEESSHHHHHHHHHHTCEEEESSCC
T ss_pred             HHHCCCCCCEEEEECCHHHHHHHHHCCCEEEEECCC
T ss_conf             995899771799957999999999869969998579


No 399
>>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, lyase; HET: NDP GDP; 1.80A {Arabidopsis thaliana} (A:)
Probab=39.65  E-value=24  Score=15.48  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=26.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|.-.+
T Consensus        32 LITGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~~   64 (381)
T 1n7h_A           32 LITGITG--QDGSYLTEFLLGKGYEVHGLIRRSSN   64 (381)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9937862--89999999999785989999788865


No 400
>>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} (A:)
Probab=39.61  E-value=12  Score=17.56  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=15.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             9889982300078887489999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      +.|+.||+   +|.|||-++..+.+
T Consensus         4 ~KiviiGd---~~vGKTsli~~~~~   25 (172)
T 2erx_A            4 YRVAVFGA---GGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECC---TTSSHHHHHHHHHT
T ss_pred             CEEEEECC---CCCCHHHHHHHHHC
T ss_conf             18999997---99799999999960


No 401
>>2qjw_A Uncharacterized protein XCC1541; NP_636912.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} (A:)
Probab=39.35  E-value=19  Score=16.18  Aligned_cols=84  Identities=8%  Similarity=-0.060  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCCCCCEEEECCCCCHHHHC-CHHHHHHH---CCCC-CCCCCH--HHH
Q ss_conf             78887489999999985247315987-6045787777558714567887704-21233220---5763-465201--225
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFL-SRGYGRKSRISFRVDLEKHSAYDVG-DEPLLLAR---RAVT-IVTSDR--KIG  126 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg~~~~~~~~v~~~~~~~~~vG-DEp~lla~---~~pv-~V~~~R--~~~  126 (338)
                      ||+.-++....+++.|.++||.+..+ .||||++.....     ..+..+.. |....+..   ..|+ ++|.+-  ..+
T Consensus        14 ~~~~~~~~~~~~~~~l~~~G~~v~~~D~~G~G~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a   88 (176)
T 2qjw_A           14 ESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQ-----LGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIA   88 (176)
T ss_dssp             TCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGGGCT-----TCCHHHHHHHHHHHHHHHHTTSCEEEEEETHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEE
T ss_conf             989874399999999997799598640003677789977-----588899999999999970789998999863652466


Q ss_pred             HHHHCCCCCCEEEECCC
Q ss_conf             66410245747997183
Q gi|254780401|r  127 VQMLLQEGVDIIIMDDG  143 (338)
Q Consensus       127 ~~~~~~~~~diiIlDDG  143 (338)
                      ..++.+......++-.+
T Consensus        89 ~~~a~~~~~~~~v~~~~  105 (176)
T 2qjw_A           89 AQVSLQVPTRALFLXVP  105 (176)
T ss_dssp             HHHHTTSCCSEEEEESC
T ss_pred             EECCCCCCCCCCCCCCC
T ss_conf             41002576433010343


No 402
>>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} (A:)
Probab=39.29  E-value=15  Score=17.08  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=17.6

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             8899823000788874899999999852
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      -|+..|-   -|+|||-++..|++.+.-
T Consensus        14 ~I~i~G~---~GsGKtT~a~~La~~~~~   38 (199)
T 2bwj_A           14 IIFIIGG---PGSGKGTQCEKLVEKYGF   38 (199)
T ss_dssp             EEEEEEC---TTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECC---CCCCHHHHHHHHHHHHCC
T ss_conf             8999899---999989999999998499


No 403
>>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=39.23  E-value=18  Score=16.45  Aligned_cols=26  Identities=19%  Similarity=0.339  Sum_probs=16.8

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             33889889982300078887489999999
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ....+.|+.||+   +|.|||-++..++.
T Consensus        25 ~~~~~KivilGd---~~VGKTsli~r~~~   50 (196)
T 2atv_A           25 KSAEVKLAIFGR---AGVGKSALVVRFLT   50 (196)
T ss_dssp             --CCEEEEEECC---TTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             898659999899---99799999999961


No 404
>>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=39.22  E-value=21  Score=15.97  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=21.8

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             33889889982300078887489999999985247315
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      +...+.|+.||.   +|+|||-++..++.---...+.+
T Consensus        20 ~~~~~KivivGd---~~vGKTSli~r~~~~~f~~~~~~   54 (191)
T 3dz8_A           20 FDYMFKLLIIGN---SSVGKTSFLFRYADDTFTPAFVS   54 (191)
T ss_dssp             EEECEEEEEEES---TTSSHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEEEEECC---CCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             573669999999---99398999999972988863266


No 405
>>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} (A:)
Probab=39.22  E-value=25  Score=15.44  Aligned_cols=34  Identities=12%  Similarity=0.184  Sum_probs=26.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             000788874899999999852473159876045787
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      +.+||||..  =..|++.|.++|+.+.+++|.-...
T Consensus         9 lVtGatG~i--G~~i~~~L~~~g~~v~~~~~~~~~~   42 (215)
T 2a35_A            9 LLAGATGLT--GEHLLDRILSEPTLAKVIAPARKAL   42 (215)
T ss_dssp             EEECTTSHH--HHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf             998799589--9999999997869689999727720


No 406
>>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} (A:1-169)
Probab=39.12  E-value=15  Score=17.05  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=15.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             89982300078887489999999985
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      |+.+|-   -|+|||-++..|++.+.
T Consensus         5 I~i~G~---~GsGKtTiA~~La~~~~   27 (169)
T 2iyv_A            5 AVLVGL---PGSGKSTIGRRLAKALG   27 (169)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHT
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf             999889---99988999999999959


No 407
>>3ipo_A Putative thiosulfate sulfurtransferase YNJE; triple-domain rhodanese; HET: PE4; 2.40A {Escherichia coli k-12} PDB: 3ipp_A (A:1-118)
Probab=38.89  E-value=16  Score=16.79  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=23.5

Q ss_pred             CCCCC-C--CCHHHHHHHHCCCCC-CEEEECCCCCCCC
Q ss_conf             76346-5--201225664102457-4799718322344
Q gi|254780401|r  115 AVTIV-T--SDRKIGVQMLLQEGV-DIIIMDDGFHSAD  148 (338)
Q Consensus       115 ~pv~V-~--~~R~~~~~~~~~~~~-diiIlDDGfQh~~  148 (338)
                      .+|+| |  ..|..++..+.+.+. ++.++|+||+.++
T Consensus        78 ~~vi~~C~~G~rs~~a~~l~~~G~~~v~~l~GG~~~W~  115 (118)
T 3ipo_A           78 APVALYGNDKDVDAVKTRLQKAGLTHISILSDALSEPS  115 (118)
T ss_dssp             SCEEEESSHHHHHHHHHHHHHTTCCCEEEBTTTTSCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             81899968734799999999828972799316513323


No 408
>>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} (A:)
Probab=38.69  E-value=14  Score=17.30  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=17.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             89982300078887489999999985247
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      |+..|-   -|+|||-++..|++.|....
T Consensus         8 I~i~G~---~GsGKTTia~~La~~l~~~~   33 (183)
T 2vli_A            8 IWINGP---FGVGKTHTAHTLHERLPGSF   33 (183)
T ss_dssp             EEEECC---C----CHHHHHHHHHSTTCE
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHCCCE
T ss_conf             999899---99149999999999819996


No 409
>>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (A:95-371)
Probab=38.69  E-value=23  Score=15.64  Aligned_cols=99  Identities=18%  Similarity=0.129  Sum_probs=43.9

Q ss_pred             CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC-----CHH
Q ss_conf             230007888748999999998524731598760457877775587145678877042123322057634652-----012
Q gi|254780401|r   50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS-----DRK  124 (338)
Q Consensus        50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~-----~R~  124 (338)
                      |=+.--|+|||-+...+++......-.+.+.-=|=++..     +   ..-.++.=++. .+.+-+-|+-..     .|.
T Consensus        73 ~I~g~~g~GKT~Ll~~i~~~~~~~~~~~v~~~iGer~~e-----v---~e~~~~~~~~~-~~~~t~vv~~ts~~~~~~r~  143 (277)
T 1fx0_A           73 LIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASS-----V---AQVVTNFQERG-AMEYTIVVAETADSPATLQY  143 (277)
T ss_dssp             BEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHH-----H---HHHHHHTGGGT-GGGSEEEEEECTTSCGGGTT
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECHHH-----H---HHHHHHHCCCC-CCCCCCEECCCCCCCHHHHH
T ss_conf             513589996778999988765278858999972113899-----9---99999640278-63233100246667788888


Q ss_pred             HH-------HHHHCCCCCC-EEEECCCCCCCCCCCEEEEEE
Q ss_conf             25-------6641024574-799718322344123069999
Q gi|254780401|r  125 IG-------VQMLLQEGVD-IIIMDDGFHSADLQADFSLIV  157 (338)
Q Consensus       125 ~~-------~~~~~~~~~d-iiIlDDGfQh~~l~rdl~Ivl  157 (338)
                      .+       |++....+-| ++++||=..|-+-.|.+...+
T Consensus       144 ~~~~~a~~~AE~~r~~G~~Vll~~Dsltr~a~A~reis~~~  184 (277)
T 1fx0_A          144 LAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLL  184 (277)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             88888989999999646772699618589999999999862


No 410
>>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} (A:152-290)
Probab=38.58  E-value=25  Score=15.37  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=24.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEEC
Q ss_conf             89889982300078887489999999985247-315987604
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRG   83 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRG   83 (338)
                      ..|+|.    ..||||=||+.-.+-..++... .....+-=|
T Consensus         5 ~~~~il----iagG~GitP~~s~l~~~~~~~~~~~~v~l~~~   42 (139)
T 2r6h_A            5 DAEXLY----IGGGAGXAPLRAQILHLFRTLKTGRKVSYWYG   42 (139)
T ss_dssp             SCEEEE----EEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEE
T ss_pred             CCCEEE----EECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             763578----84275136388999999873478861999706


No 411
>>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} (A:1-59,A:109-215)
Probab=38.57  E-value=12  Score=17.57  Aligned_cols=34  Identities=15%  Similarity=0.052  Sum_probs=25.7

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89889982300078887489999999985247315987
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      .-.||+|.++.  |.|||-.++.++..|++  +++-.+
T Consensus        26 ~~~~~~~~~~~--~~gk~~~~~~~~~~~~~--~~~~~~   59 (166)
T 3lnc_A           26 VGVILVLSSPS--GCGKTTVANKLLEKQKN--NIVKSV   59 (166)
T ss_dssp             CCCEEEEECSC--C----CHHHHHHC------CEEECC
T ss_pred             CCEEEEEECCC--CCCHHHHHHHHHHHCCC--CEEEEE
T ss_conf             98499998989--98999999999964987--678624


No 412
>>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} (A:)
Probab=38.52  E-value=15  Score=16.95  Aligned_cols=18  Identities=28%  Similarity=0.298  Sum_probs=14.9

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             788874899999999852
Q gi|254780401|r   55 GGTGKTPTALAIAKAVID   72 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~   72 (338)
                      -|+|||-++..|++.|..
T Consensus        11 ~GsGKsT~a~~La~~l~~   28 (173)
T 1e6c_A           11 RGCGMTTVGRELARALGY   28 (173)
T ss_dssp             TTSSHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHCC
T ss_conf             999889999999999699


No 413
>>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} (A:)
Probab=38.28  E-value=26  Score=15.34  Aligned_cols=38  Identities=24%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8899823000788874899999999852473159876045787
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      ||=+|.|.+.|-+|.     +||+.+..+|..|..+++--.-.
T Consensus        24 ~VR~ItN~SSGk~G~-----~lA~~~~~~Ga~V~li~g~~~~~   61 (226)
T 1u7z_A           24 PVRYISDHSSGKMGF-----AIAAAAARRGANVTLVSGPVSLP   61 (226)
T ss_dssp             SSEEEEECCCSHHHH-----HHHHHHHHTTCEEEEEECSCCCC
T ss_pred             CCCEECCCCCCHHHH-----HHHHHHHHCCCEEEEEECCCCCC
T ss_conf             822426178219999-----99868987897199884145456


No 414
>>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560} (A:)
Probab=38.11  E-value=13  Score=17.32  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=22.0

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             88998230007888748999999998524731598760
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      ++|+|.-.  -|+|||-++..|++.|....+....+.|
T Consensus         7 ~~I~i~G~--~GsGKsTia~~La~~l~~~~~~~d~~~~   42 (201)
T 3fdi_A            7 IIIAIGRE--FGSGGHLVAKKLAEHYNIPLYSKELLDE   42 (201)
T ss_dssp             CEEEEEEC--TTSSHHHHHHHHHHHTTCCEECHHHHHH
T ss_pred             EEEEECCC--CCCCHHHHHHHHHHHHCCCEECCHHHHH
T ss_conf             58996489--9888799999999993993886689999


No 415
>>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} (A:122-186)
Probab=38.04  E-value=22  Score=15.79  Aligned_cols=19  Identities=21%  Similarity=0.144  Sum_probs=16.5

Q ss_pred             CCHHHHHHHHHHHHCCCCE
Q ss_conf             7489999999985247315
Q gi|254780401|r   59 KTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        59 KTP~v~~l~~~l~~~g~~~   77 (338)
                      +||+...|++.|+++|++-
T Consensus        17 ~t~lS~~iskdLKkrGFkF   35 (65)
T 2jg6_A           17 VDDTATQLSKDLKQYGFKF   35 (65)
T ss_dssp             CCHHHHHHHHHHHTTTCCS
T ss_pred             CCHHHHHHHHHHHHCCCEE
T ss_conf             8889999999998577854


No 416
>>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* (A:1-72)
Probab=37.95  E-value=16  Score=16.79  Aligned_cols=21  Identities=29%  Similarity=0.451  Sum_probs=15.9

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             988998230007888748999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      +.|+.||+   +|.|||-++..+.
T Consensus         3 ~Ki~lvGd---~~vGKTsl~~~~~   23 (72)
T 2zej_A            3 XKLXIVGN---TGSGKTTLLQQLX   23 (72)
T ss_dssp             CEEEEESC---TTSSHHHHHHHHT
T ss_pred             CEEEEECC---CCCCHHHHHHHHH
T ss_conf             18999995---9977999999997


No 417
>>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} (A:1-115,A:163-216)
Probab=37.90  E-value=16  Score=16.84  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=17.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf             788874899999999852473159
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPG   78 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~   78 (338)
                      -|+|||-++..|++.|.-..+.+.
T Consensus         9 pGsGKSTlak~La~~l~~~~i~~~   32 (169)
T 3fb4_A            9 PGAGKGTQAEQIIEKYEIPHISTG   32 (169)
T ss_dssp             TTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             CCCCHHHHHHHHHHHHCCEEECHH
T ss_conf             999879999999999799678599


No 418
>>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} (A:)
Probab=37.54  E-value=15  Score=17.02  Aligned_cols=27  Identities=26%  Similarity=0.175  Sum_probs=19.0

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             078887489999999985247315987
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      .-|+|||-++..|++.|...++....+
T Consensus        13 ~~GsGKsT~a~~L~~~l~~~~i~~~~~   39 (193)
T 2rhm_A           13 HPATGKTTLSQALATGLRLPLLSKDAF   39 (193)
T ss_dssp             STTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEHHHE
T ss_conf             899999999999999969948733230


No 419
>>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} (A:)
Probab=37.27  E-value=16  Score=16.76  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=19.9

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             3889889982300078887489999999985247315
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      ...+.|+.||.   +|.|||-++..+..---...+.+
T Consensus         8 ~~~~KiviiGd---~~VGKTsli~r~~~~~F~~~~~~   41 (186)
T 2bme_A            8 DFLFKFLVIGN---AGTGKSCLLHQFIEKKFKDDSNH   41 (186)
T ss_dssp             SEEEEEEEEES---TTSSHHHHHHHHHHSSCCTTCCC
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             86889999998---99188999999980988865554


No 420
>>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} (A:)
Probab=37.04  E-value=18  Score=16.46  Aligned_cols=26  Identities=15%  Similarity=0.169  Sum_probs=18.3

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             33889889982300078887489999999
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ....+.|+.||+   +|+|||-++..+..
T Consensus        13 ~~~~~KivlvG~---~~vGKTsli~r~~~   38 (211)
T 3bbp_A           13 PLRKFKLVFLGE---QSVGKTSLITRFMY   38 (211)
T ss_dssp             ----CEEEEEES---TTSSHHHHHHHHHT
T ss_pred             CCCEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             876689999998---99799999999973


No 421
>>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} (A:)
Probab=37.01  E-value=13  Score=17.36  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=18.2

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             33889889982300078887489999999
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      +...+.|+.||+   +|.|||-++..++.
T Consensus         5 ~d~~~KvvivGd---~~VGKTsli~r~~~   30 (203)
T 1zbd_A            5 FDYXFKILIIGN---SSVGKTSFLFRYAD   30 (203)
T ss_dssp             CSEEEEEEEECS---TTSSHHHHHHHHHT
T ss_pred             CCEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf             115359999999---99198999999970


No 422
>>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} (A:97-232)
Probab=36.97  E-value=27  Score=15.20  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=23.7

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..-|+|.|    +||||=||+..++-..++..-.....+-
T Consensus         5 ~~~~~ili----agG~GIaP~~s~l~~~~~~~~~~~v~l~   40 (136)
T 1qfj_A            5 EERPMILI----AGGTGFSYARSILLTALARNPNRDITIY   40 (136)
T ss_dssp             SSSCEEEE----EETTCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCEEEE----ECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             46758999----3697513199999999980999989999


No 423
>>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} (A:241-367)
Probab=36.95  E-value=22  Score=15.85  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=24.3

Q ss_pred             CCCC-CCCCHHH---HHHHHCCCCCCEEEECCCCCCCCCC
Q ss_conf             7634-6520122---5664102457479971832234412
Q gi|254780401|r  115 AVTI-VTSDRKI---GVQMLLQEGVDIIIMDDGFHSADLQ  150 (338)
Q Consensus       115 ~pv~-V~~~R~~---~~~~~~~~~~diiIlDDGfQh~~l~  150 (338)
                      .+|+ .|..-.+   ++..+.+.+.++.+||+|++.+.-.
T Consensus        83 ~~iv~~c~~g~~s~~~a~~l~~~G~~v~~l~GG~~aW~~~  122 (127)
T 1yt8_A           83 ARLVLVDDDGVRANXSASWLAQXGWQVAVLDGLSEADFSE  122 (127)
T ss_dssp             CEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGGCCB
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHC
T ss_conf             7599994897168888999986266500014643210101


No 424
>>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161)
Probab=36.95  E-value=15  Score=17.01  Aligned_cols=33  Identities=3%  Similarity=-0.219  Sum_probs=28.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf             111686389874155357899988740100001
Q gi|254780401|r  218 FDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQ  250 (338)
Q Consensus       218 ~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~  250 (338)
                      ....+++++.++|-..-+-+.+.|++.|+.+..
T Consensus        80 ~~~~~~~vl~~~g~~~~~~L~~~L~~~G~~v~~  112 (114)
T 1wcw_A           80 LPQGRGVAALQLYGKPLPLLENALAERGYRVLP  112 (114)
T ss_dssp             SCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEE
T ss_pred             HCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEE
T ss_conf             435884899970798817999999977997669


No 425
>>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} (A:)
Probab=36.87  E-value=16  Score=16.83  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=16.8

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...++||.||+   +|.|||-++...+.
T Consensus        24 ~~~~KiviiGd---~~VGKTsLi~r~~~   48 (201)
T 2ew1_A           24 DFLFKIVLIGN---AGVGKTCLVRRFTQ   48 (201)
T ss_dssp             SEEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf             57989999998---98788999998836


No 426
>>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* (A:89-324)
Probab=36.79  E-value=9.6  Score=18.38  Aligned_cols=27  Identities=26%  Similarity=0.196  Sum_probs=22.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|+|||-++..++......+.+++.++
T Consensus        28 pG~GKT~l~~~~~~~~~~~~~~~~~~~   54 (236)
T 2z43_A           28 FGSGKTQLCHQLSVNVQLPPEKGGLSG   54 (236)
T ss_dssp             TTSSHHHHHHHHHHHTTSCGGGTCCSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             887199999999999998776447786


No 427
>>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} (A:)
Probab=36.78  E-value=17  Score=16.68  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=16.8

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|.|||-++..+++
T Consensus        27 ~~~~KiviiGd---~~VGKTSLi~r~~~   51 (191)
T 1oix_A           27 DYLFKVVLIGD---SGVGKSNLLSRFTR   51 (191)
T ss_dssp             SEEEEEEEEEC---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             68979999998---99298999999973


No 428
>>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} (A:)
Probab=36.75  E-value=27  Score=15.18  Aligned_cols=30  Identities=20%  Similarity=0.133  Sum_probs=24.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +.+||||-  +=.+|++.|.++|+++.++.|.
T Consensus         8 lItGatG~--iG~~l~~~Ll~~g~~v~~~~~~   37 (253)
T 1xq6_A            8 LVTGASGR--TGQIVYKKLKEGSDKFVAKGLV   37 (253)
T ss_dssp             EEESTTSH--HHHHHHHHHHHTTTTCEEEEEE
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCCEEEEEEE
T ss_conf             99898658--9999999999769947999970


No 429
>>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} (A:1-38,A:209-240,A:336-384)
Probab=36.70  E-value=27  Score=15.17  Aligned_cols=23  Identities=9%  Similarity=0.185  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89999999985247315987604
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.-..+|..|.++|++|.|+-|+
T Consensus        13 ~aG~~~A~~La~~G~kVlVIEkr   35 (119)
T 2bi7_A           13 FSGAVIGRQLAEKGHQVHIIDQR   35 (119)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEESS
T ss_pred             HHHHHHHHHHHHCCCCEEEEECC
T ss_conf             99999999998689968999779


No 430
>>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} (A:)
Probab=36.67  E-value=27  Score=15.17  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=26.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +.+||++..-+=..+|+.|.+.|.++.+..|-
T Consensus        13 lITGas~~~GIG~aiA~~la~~G~~Vv~~~r~   44 (265)
T 1qsg_A           13 LVTGVASKLSIAYGIAQAMHREGAELAFTYQN   44 (265)
T ss_dssp             EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99899985018999999999869999999588


No 431
>>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} (A:)
Probab=36.64  E-value=16  Score=16.78  Aligned_cols=88  Identities=16%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC
Q ss_conf             88988998230007888748999999998524731598760457877775587145678877042123322057634652
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS  121 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~  121 (338)
                      ..|-.||-||+     ..+|++..+.+.+..   ..++.|+|=|....+++            -..+....+..-+-.+.
T Consensus         9 ~~VLFVC~~N~-----~RS~mAEal~~~~~~---~~~~~sag~~~~~~~~v------------~~~a~~~l~~~gid~~~   68 (150)
T 2wmy_A            9 DSILVICTGNI-----CRSPIGERLLRRLLP---SKKINSAGVGALVDHTA------------DESAIRVAEKNGLCLKG   68 (150)
T ss_dssp             CEEEEEESSSS-----SHHHHHHHHHHHHCT---TSEEEEEETTCCTTCCC------------CHHHHHHHHHTTCCCTT
T ss_pred             CCEEEEECCCH-----HHHHHHHHHHHHHCC---CCCCEEEEEECCCCCCC------------CHHHHHHHHHCCCCCCC
T ss_conf             80899908957-----799999999997353---36866889853679989------------80789989980988220


Q ss_pred             CHHHHHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf             0122566410245747997183223441
Q gi|254780401|r  122 DRKIGVQMLLQEGVDIIIMDDGFHSADL  149 (338)
Q Consensus       122 ~R~~~~~~~~~~~~diiIlDDGfQh~~l  149 (338)
                      .+.+......-..+|+||.-|--|+..+
T Consensus        69 ~~~~~l~~~~~~~~D~Ii~m~~~~~~~l   96 (150)
T 2wmy_A           69 HRGTKFTSALARQYDLLLVMEYSHLEQI   96 (150)
T ss_dssp             CCCCBCCHHHHTTCSEEEESCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEECCHHHHHHH
T ss_conf             1023443002456889998798899999


No 432
>>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} (A:)
Probab=36.57  E-value=17  Score=16.60  Aligned_cols=18  Identities=22%  Similarity=-0.040  Sum_probs=14.6

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             788874899999999852
Q gi|254780401|r   55 GGTGKTPTALAIAKAVID   72 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~   72 (338)
                      =|+|||-++..||+.|.-
T Consensus         9 pGsGKtT~a~~La~~~~~   26 (214)
T 1e4v_A            9 PVAGKGTQAQFIMEKYGI   26 (214)
T ss_dssp             TTSSHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHCC
T ss_conf             999879999999998798


No 433
>>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} (A:145-467)
Probab=36.43  E-value=27  Score=15.14  Aligned_cols=30  Identities=17%  Similarity=0.273  Sum_probs=15.6

Q ss_pred             HCCCCCCEEEECCCC-CCCCCCCEEEEEEEC
Q ss_conf             102457479971832-234412306999961
Q gi|254780401|r  130 LLQEGVDIIIMDDGF-HSADLQADFSLIVVN  159 (338)
Q Consensus       130 ~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d  159 (338)
                      +.+.+..+++.+|++ .+..+.+|.-+..=+
T Consensus       197 v~~~G~~~~~W~D~l~~~~~l~~~~ii~~W~  227 (323)
T 2gjx_A          197 VSSYGKGYVVWQEVFDNKVKIQPDTIIQVWR  227 (323)
T ss_dssp             HHTTTCEEEEEHHHHHTTCCCCTTCEEEECC
T ss_pred             HHHCCCCEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             9975984685023446777789986377633


No 434
>>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structural protein; 2.41A {Rattus norvegicus} (A:1-21,A:182-334)
Probab=36.35  E-value=27  Score=15.13  Aligned_cols=73  Identities=16%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             HHCCHHHHHHHHHHHHCCCCH----HH----HHHHCCCCHHHH--HHHHCCCCCC-----CCCEEEEEECCCCHHHHHHH
Q ss_conf             210025566514544204412----45----776313501112--2220132111-----68638987415535789998
Q gi|254780401|r  176 RVPLSRQLSYVDAILYVGNKK----NV----ISSIKNKSVYFA--KLKPRLTFDL-----SGKKVLAFSGIADTEKFFTT  240 (338)
Q Consensus       176 REp~~~~l~rad~vi~~~~~~----~~----~~~~~~~~i~~~--~~~~~~~~~l-----~~k~v~afsGIa~P~~F~~~  240 (338)
                      ++-+..+++++|+||++|.-.    +.    .......++.+.  ..+|....-.     ......+|+==|+|.....+
T Consensus        78 ~~~l~~~~~~~DiVIttGG~g~g~~D~t~~a~~~~~~~~i~~~~~~~~Pg~~~~~~~~~~~~~~~~vi~LPG~P~aa~~~  157 (174)
T 2fts_A           78 LNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT  157 (174)
T ss_dssp             HHHHHHHHHHCSEEEEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSCTTCEEEEEEETTEEEEEEEECSSHHHHHHH
T ss_pred             HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCHHHHHH
T ss_conf             99998645434579850554614678899998751562799967520378654567712589984699756674445554


Q ss_pred             HHHHCCCC
Q ss_conf             87401000
Q gi|254780401|r  241 VRQLGALI  248 (338)
Q Consensus       241 L~~~g~~i  248 (338)
                      +..+-..+
T Consensus       158 ~~~~v~p~  165 (174)
T 2fts_A          158 CNLFVVPA  165 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             78763078


No 435
>>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Salmonella typhimurium} (A:42-95,A:282-297)
Probab=36.28  E-value=16  Score=16.73  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             CCCCCCHHHHHHHHHHHHC-CCCEE
Q ss_conf             7888748999999998524-73159
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDK-NLKPG   78 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~-g~~~~   78 (338)
                      |=.||.+|...||+.|.+. ||.|+
T Consensus        32 gPQGk~~fi~ALA~lLn~~YGWn~~   56 (70)
T 3g7q_A           32 GPQGKTALLNALAVLLRETLGWDPG   56 (70)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             9877599999999868998689944


No 436
>>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} (A:)
Probab=36.19  E-value=28  Score=15.12  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      -|.++.+-.+|...+.+..+|+||+|
T Consensus        33 ~v~~a~~~~~al~~~~~~~~dliilD   58 (137)
T 3hdg_A           33 EVWSAGDGEEGERLFGLHAPDVIITD   58 (137)
T ss_dssp             CEEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf             99998999999999984788889982


No 437
>>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} (A:1-226)
Probab=36.13  E-value=8.8  Score=18.65  Aligned_cols=30  Identities=20%  Similarity=0.074  Sum_probs=23.7

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             338898899823000788874899999999852
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      ...+-+|+-+|.=   |||||-++..+++.+..
T Consensus        43 ~~~~~~vLL~Gpp---GtGKT~la~~la~~~~~   72 (226)
T 2r44_A           43 ICTGGHILLEGVP---GLAKTLSVNTLAKTXDL   72 (226)
T ss_dssp             HHHTCCEEEESCC---CHHHHHHHHHHHHHTTC
T ss_pred             HHCCCCEEEECCC---CCHHHHHHHHHHHHHCC
T ss_conf             9769958998999---87099999999986401


No 438
>>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} (A:)
Probab=35.99  E-value=26  Score=15.24  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=12.1

Q ss_pred             CCCCCCHHHHHHHHCCC----------CCCEEEEC
Q ss_conf             34652012256641024----------57479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQE----------GVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~----------~~diiIlD  141 (338)
                      |..+.+=.+|..++.+.          .+|+||+|
T Consensus        35 v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD   69 (149)
T 1k66_A           35 IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLD   69 (149)
T ss_dssp             EEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEEC
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
T ss_conf             99989999999999851311111125799989981


No 439
>>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* (A:)
Probab=35.84  E-value=18  Score=16.46  Aligned_cols=18  Identities=28%  Similarity=0.385  Sum_probs=14.3

Q ss_pred             ECCCCCCHHHHHHHHHHH
Q ss_conf             078887489999999985
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~   71 (338)
                      .-|+|||-++..|++.|.
T Consensus        15 ~~GsGKtT~a~~La~~l~   32 (168)
T 1zuh_A           15 FMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHC
T ss_conf             999989999999999969


No 440
>>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} (A:73-317,A:427-443,A:654-697)
Probab=35.81  E-value=22  Score=15.77  Aligned_cols=51  Identities=16%  Similarity=0.062  Sum_probs=24.0

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCC
Q ss_conf             987415535789998874010000122143323489899999999756479879985466343823
Q gi|254780401|r  226 LAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHK  291 (338)
Q Consensus       226 ~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~  291 (338)
                      ..+.|+-+-+.|.+++..+..     +-|.+.++-+..+|          =..+=.|+--+|||-+
T Consensus       222 ~~~~~~dD~~~f~~~~~al~~-----lGf~~~~~~~l~~L----------~~~l~~t~~hfIRCIk  272 (306)
T 1w7j_A          222 PVIDGIDDAKEMVNTRQACTL-----LGIVKQHSFIGVLD----------IYGFETTTPHYVRCIK  272 (306)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHH-----TTCSCCSEEEEEEE----------CCCCCCSEEEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHH-----CCCCCCCCEEEEEE----------ECCCCCCCCEEEEEEC
T ss_conf             203785639999999999986-----49956551588885----------0486557987999979


No 441
>>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:440-652)
Probab=35.72  E-value=28  Score=15.07  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=18.2

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8998230007888748999999998524
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      +.-+|-   =|||||=++.+||+.+...
T Consensus        52 ~ll~Gp---pG~GKT~lAk~lA~~~~~~   76 (213)
T 1r6b_X           52 FLFAGP---TGVGKTEVTVQLSKALGIE   76 (213)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             898778---8756899999999980688


No 442
>>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.31A {Listeria innocua} (A:84-253)
Probab=35.48  E-value=28  Score=15.04  Aligned_cols=121  Identities=10%  Similarity=0.047  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCC--EEEECCCCCHHHHCCHHHHHH-H-----------CCC
Q ss_conf             888748999999998524731598760457877-----775--587145678877042123322-0-----------576
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS-----RIS--FRVDLEKHSAYDVGDEPLLLA-R-----------RAV  116 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~-----~~~--~~v~~~~~~~~~vGDEp~lla-~-----------~~p  116 (338)
                      ++|=|.....+...|.+.|-.+.+-+=+|..-.     .|.  ..+.......  .-++....+ +           +.|
T Consensus         7 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~NP   84 (170)
T 3ffh_A            7 TAGVDELIELLTRVLLDTTTNTVXATPTFVQYRQNALIEGAEVREIPLLQDGE--HDLEGXLNAIDEKTTIVWICNPNNP   84 (170)
T ss_dssp             ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSC--CCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred             ECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCC--CCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             28788999999999708999899836860477899986597201320134542--0589999756779838997799899


Q ss_pred             C--CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----------CCEEEEEEECCCCCCC-C----CCCCCCHHHHHC
Q ss_conf             3--46520122566410245747997183223441-----------2306999961843356-6----553761365210
Q gi|254780401|r  117 T--IVTSDRKIGVQMLLQEGVDIIIMDDGFHSADL-----------QADFSLIVVNSHRGLG-N----GLVFPAGPLRVP  178 (338)
Q Consensus       117 v--~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l-----------~rdl~Ivl~d~~~~~g-n----~~llPaGpLREp  178 (338)
                      +  +.+.++.+.+..+.+ .-+++|.||.+++...           ..+-.|++....+.|| .    |+++--..++|-
T Consensus        85 tG~~~~~~~~~~l~~~~~-~~~~~i~Dda~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~g~i~~~~~~~~~  163 (170)
T 3ffh_A           85 TGNYIELADIQAFLDRVP-SDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQ  163 (170)
T ss_dssp             TCCCCCHHHHHHHHTTSC-TTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCC-CCCEEEEECHHHHHHCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             871044899999999733-4838999640267642577642123303674576225653214665444234599999999


Q ss_pred             C
Q ss_conf             0
Q gi|254780401|r  179 L  179 (338)
Q Consensus       179 ~  179 (338)
                      +
T Consensus       164 l  164 (170)
T 3ffh_A          164 L  164 (170)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 443
>>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens str} (A:)
Probab=35.47  E-value=27  Score=15.22  Aligned_cols=31  Identities=10%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +++||||  =+=.+|++.|.++|+++.++.|.-
T Consensus        18 LVTGatG--fiG~~lv~~Ll~~g~~V~~~~~~~   48 (342)
T 2hrz_A           18 AIIGAAG--XVGRKLTQRLVKDGSLGGKPVEKF   48 (342)
T ss_dssp             EEETTTS--HHHHHHHHHHHHHCEETTEEEEEE
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             9989986--999999999997799666663079


No 444
>>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} (A:)
Probab=35.38  E-value=16  Score=16.75  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=16.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             89889982300078887489999999
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      .+.|+.||+   +|.|||-++..++.
T Consensus         6 ~~Ki~ivG~---~~vGKTSLi~r~~~   28 (170)
T 1r2q_A            6 QFKLVLLGE---SAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECS---TTSSHHHHHHHHHH
T ss_pred             EEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             889999999---99898999999985


No 445
>>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A (A:1-141,A:295-395)
Probab=35.29  E-value=28  Score=15.02  Aligned_cols=35  Identities=6%  Similarity=-0.047  Sum_probs=22.2

Q ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHH
Q ss_conf             41230699996184335665537613652100255
Q gi|254780401|r  148 DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQ  182 (338)
Q Consensus       148 ~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~  182 (338)
                      ...++.-++++.|.-+---.-+++.|+|-|-...+
T Consensus       123 ~~~~~~~vL~lSATpp~~v~~~~~~~~~~~~~~~~  157 (242)
T 3kqn_A          123 ETAGARLVVLATATPPGSVSGMFDSSVLCECYDAG  157 (242)
T ss_dssp             TTTTCSEEEEEESSCTTCCCSBCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             46876169996236664434456389999999964


No 446
>>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Rhizobium meliloti} (A:)
Probab=35.27  E-value=28  Score=15.02  Aligned_cols=26  Identities=4%  Similarity=0.045  Sum_probs=13.1

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      .|.+..+-.++...+.+..+|+||+|
T Consensus        29 ~v~~~~~~~~al~~l~~~~~d~vilD   54 (126)
T 1dbw_A           29 AVKMHQSAEAFLAFAPDVRNGVLVTD   54 (126)
T ss_dssp             EEEEESCHHHHHHHGGGCCSEEEEEE
T ss_pred             EEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf             99997687999999760688799987


No 447
>>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} (A:206-338)
Probab=35.09  E-value=29  Score=15.00  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             0078887489999999985247315987604
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .+||||=||+...+-..+.........+-=|
T Consensus        11 ia~G~GiaP~~s~l~~~~~~~~~~~i~l~~~   41 (133)
T 1krh_A           11 LAGGTGIAPFLSMLQVLEQKGSEHPVRLVFG   41 (133)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             9798875559999999986144562379871


No 448
>>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} (A:1-21,A:180-326)
Probab=35.07  E-value=29  Score=15.00  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             HHHCCHHHHHHHHHHHHCCCCH----HH----HHHHCCCCHHHHHHHHCC---CCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             5210025566514544204412----45----776313501112222013---211168638987415535789998874
Q gi|254780401|r  175 LRVPLSRQLSYVDAILYVGNKK----NV----ISSIKNKSVYFAKLKPRL---TFDLSGKKVLAFSGIADTEKFFTTVRQ  243 (338)
Q Consensus       175 LREp~~~~l~rad~vi~~~~~~----~~----~~~~~~~~i~~~~~~~~~---~~~l~~k~v~afsGIa~P~~F~~~L~~  243 (338)
                      +++-+.+++.++|+||++|.-.    +.    ..........-....|..   .....++.++..  =|+|.....++..
T Consensus        78 I~~~l~~~~~~~DlVIttGG~g~g~~D~t~~al~~~~~~~~~gi~~~PG~~~~~g~~~~~~v~~L--PG~P~aa~~~~~~  155 (168)
T 1uz5_A           78 LKALIEKAVNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGL--PGYPTSCLTNFTL  155 (168)
T ss_dssp             HHHHHHHHHHHCSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCTTCEEEEETTEEEEEE--CSSHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCCEEEEC--CCCCHHHHHHHHH
T ss_conf             66654203323424797257343123779999986496699888788313237852136538953--6564005465788


Q ss_pred             H
Q ss_conf             0
Q gi|254780401|r  244 L  244 (338)
Q Consensus       244 ~  244 (338)
                      +
T Consensus       156 ~  156 (168)
T 1uz5_A          156 L  156 (168)
T ss_dssp             H
T ss_pred             H
T ss_conf             7


No 449
>>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} (A:)
Probab=34.91  E-value=19  Score=16.26  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=16.9

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|+|||-++..+..
T Consensus        26 ~~~~KIvivGd---~gVGKTSLi~r~~~   50 (205)
T 1gwn_A           26 NVKCKIVVVGD---SQCGKTALLHVFAK   50 (205)
T ss_dssp             -CEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             57869999998---99888999999972


No 450
>>3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} (A:42-103,A:308-335)
Probab=34.86  E-value=25  Score=15.39  Aligned_cols=28  Identities=11%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             ECCEEECCCCCCHHHHHHHHHHHHC-CCCE
Q ss_conf             8230007888748999999998524-7315
Q gi|254780401|r   49 VGGFVMGGTGKTPTALAIAKAVIDK-NLKP   77 (338)
Q Consensus        49 VGNitvGGtGKTP~v~~l~~~l~~~-g~~~   77 (338)
                      |||- -|=.||.+|...||+.|.++ ||.|
T Consensus        35 lgnY-DgPQG~~~Fi~ALA~lLn~~YGW~~   63 (90)
T 3if2_A           35 XANY-SNPQGDSAFIDALVGFFNRHYDWNP   63 (90)
T ss_dssp             HHSC-CCTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred             CCCC-CCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             2628-9986799999999999999858995


No 451
>>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} (A:)
Probab=34.83  E-value=29  Score=14.97  Aligned_cols=33  Identities=27%  Similarity=0.314  Sum_probs=26.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||-.  =.++++.|.++|+.+.+++|.-..
T Consensus         8 lVtGatG~i--G~~i~~~Ll~~g~~v~~~~r~~~~   40 (308)
T 1qyc_A            8 LLIGATGYI--GRHVAKASLDLGHPTFLLVRESTA   40 (308)
T ss_dssp             EEESTTSTT--HHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             998998289--999999999787979999889755


No 452
>>2zwm_A Transcriptional regulatory protein YYCF; two-component system, response regulator, dimerization domain, phosphorylation site, cytoplasm; 2.04A {Bacillus subtilis} (A:)
Probab=34.79  E-value=29  Score=14.97  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=11.2

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |.++.+-.+|...+.+..+|+||+|
T Consensus        29 v~~a~~~~eAl~~l~~~~~dlvi~D   53 (130)
T 2zwm_A           29 VHCAHDGNEAVEMVEELQPDLILLD   53 (130)
T ss_dssp             EEEECSHHHHHHHHHHHCCSEEEEE
T ss_pred             EEEECCHHHHHHHHHHCCCCEEECC
T ss_conf             9995869999999983799989814


No 453
>>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* (A:)
Probab=34.78  E-value=15  Score=16.91  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=18.2

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             899823000788874899999999852
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      |+.+|.-   |+|||-++-.||+.|.-
T Consensus        10 I~l~G~~---GsGKSTlak~La~~l~~   33 (227)
T 1zd8_A           10 AVIMGAP---GSGKGTVSSRITTHFEL   33 (227)
T ss_dssp             EEEEECT---TSSHHHHHHHHHHHSSS
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHCC
T ss_conf             9998999---99879999999999799


No 454
>>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* (A:182-494)
Probab=34.77  E-value=29  Score=14.96  Aligned_cols=30  Identities=17%  Similarity=0.014  Sum_probs=21.8

Q ss_pred             HCCCCCCEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf             102457479971832234412306999961
Q gi|254780401|r  130 LLQEGVDIIIMDDGFHSADLQADFSLIVVN  159 (338)
Q Consensus       130 ~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d  159 (338)
                      +.+.+..+++.+|++.+..+.+|..+..-.
T Consensus       184 l~~~gk~~~~W~D~l~~~~~~~d~~~~~W~  213 (313)
T 3gh5_A          184 ANSYGKKVVGWDPSDTSSGATSDSVLQNWT  213 (313)
T ss_dssp             HHHTTCEEEEETTGGGCTTCCTTCEEEECS
T ss_pred             HHHCCCEEEEECCCCCCCCCCCCCEEEECC
T ss_conf             998498689851202455578743476306


No 455
>>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} (A:156-314)
Probab=34.75  E-value=19  Score=16.31  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=20.6

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8988998230007888748999999998524
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .-|+|.|    +||||=||+.-.|-..+...
T Consensus         7 ~~~~v~i----agGtGIaP~~s~l~~~~~~~   33 (159)
T 1fnb_A            7 NATIIML----GTGTGIAPFRSFLWKMFFEK   33 (159)
T ss_dssp             TCEEEEE----EEGGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEE----ECCCCCHHHHHHHHHHHHHH
T ss_conf             8748999----74766017999999999853


No 456
>>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (Y:)
Probab=34.72  E-value=19  Score=16.30  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=17.3

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|+|||-++..++.
T Consensus         6 ~~~~KIviiGd---~gVGKTsli~r~~~   30 (206)
T 2bcg_Y            6 DYLFKLLLIGN---SGVGKSCLLLRFSD   30 (206)
T ss_dssp             SEEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf             78889999999---99198999999960


No 457
>>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} (A:104-343)
Probab=34.71  E-value=12  Score=17.79  Aligned_cols=27  Identities=15%  Similarity=-0.152  Sum_probs=21.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|||||-+++-++-.....|..+...+
T Consensus        28 pG~GKT~l~~q~~~~~~~~~~~~~~~~   54 (240)
T 1v5w_A           28 FRTGKTQLSHTLCVTAQLPGAGGYPGG   54 (240)
T ss_dssp             TTCTHHHHHHHHHHHTTSCBTTTBCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             683499999999999986454056676


No 458
>>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreductase; HET: FAD; 1.56A {Physarum polycephalum} (A:111-243)
Probab=34.61  E-value=23  Score=15.61  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=16.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHC
Q ss_conf             007888748999999998524
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .+||||=||+...|-..++..
T Consensus        12 iagG~GItP~~s~l~~~~~~~   32 (133)
T 2eix_A           12 IAGGTGITPMLQVARAIIKNP   32 (133)
T ss_dssp             EEEGGGHHHHHHHHHHHHTCT
T ss_pred             EECCCCCCCHHHHHHHHHHHC
T ss_conf             971577640789999999730


No 459
>>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* (D:)
Probab=34.54  E-value=29  Score=14.94  Aligned_cols=33  Identities=12%  Similarity=0.128  Sum_probs=27.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  =+=.+|++.|.+.|+.+.++.|.-..
T Consensus         9 LITGatG--fiG~~lv~~Ll~~~~~v~~~~~~~~~   41 (337)
T 2c29_D            9 CVTGASG--FIGSWLVMRLLERGYTVRATVRDPTN   41 (337)
T ss_dssp             EETTTTS--HHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9978987--89999999999783989999788752


No 460
>>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} (A:)
Probab=34.54  E-value=17  Score=16.53  Aligned_cols=44  Identities=16%  Similarity=0.193  Sum_probs=28.3

Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECCCC----------CCCCCCCEEEEEEECCC
Q ss_conf             465201225664102457479971832----------23441230699996184
Q gi|254780401|r  118 IVTSDRKIGVQMLLQEGVDIIIMDDGF----------HSADLQADFSLIVVNSH  161 (338)
Q Consensus       118 ~V~~~R~~~~~~~~~~~~diiIlDDGf----------Qh~~l~rdl~Ivl~d~~  161 (338)
                      .++.+-.+|...+.+..+|+||+|-.+          |=++..++.-++++.+.
T Consensus        31 ~~a~~~~~al~~~~~~~~dlii~D~~lP~~~G~~l~~~i~~~~~~~pvi~lt~~   84 (120)
T 1tmy_A           31 GEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAM   84 (120)
T ss_dssp             EEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECT
T ss_pred             EEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             998899999999984689889984568999789999999986889978999734


No 461
>>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240)
Probab=34.51  E-value=19  Score=16.31  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=18.8

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             48999999998524731598760457
Q gi|254780401|r   60 TPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        60 TP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      -|-+.-+.+.|+++|++.+|+|.+..
T Consensus        24 ~pGv~e~L~~Lk~~G~~l~i~Tn~~~   49 (152)
T 2hi0_A           24 FPGILDLXKNLRQKGVKLAVVSNKPN   49 (152)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEEEEEEH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             78546899998641245211356736


No 462
>>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} (A:114-250)
Probab=34.45  E-value=29  Score=14.93  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=24.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|+|.    .+||||=||+.-.|-..+........++-
T Consensus         5 ~~iv~----iAgG~GIaP~~s~l~~~~~~~~~~~v~l~   38 (137)
T 1tvc_A            5 APRYF----VAGGTGLAPVVSMVRQMQEWTAPNETRIY   38 (137)
T ss_dssp             SCEEE----EEESSTTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCEEE----EECCCCCCCCCCCEEEECCCCCCCCCEEE
T ss_conf             54699----96487864422210000124777420247


No 463
>>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} (A:)
Probab=34.40  E-value=17  Score=16.53  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=18.0

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             43388988998230007888748999999
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .....+.|+.||+   +|+|||-++..++
T Consensus        14 ~~~~~~kI~iiG~---~gvGKTSLi~r~~   39 (186)
T 1ksh_A           14 QKERELRLLMLGL---DNAGKTTILKKFN   39 (186)
T ss_dssp             ---CCEEEEEECS---TTSSHHHHHHHHT
T ss_pred             CCCCEEEEEEECC---CCCCHHHHHHHHH
T ss_conf             4664679999998---9999899999982


No 464
>>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} (A:1-190)
Probab=34.37  E-value=29  Score=14.92  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=25.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  -+=.++++.|.++|+.+.++.|.-..
T Consensus         5 lVtGatG--~iG~~lv~~Ll~~g~~v~~~~~~~~~   37 (190)
T 1db3_A            5 LITGVTG--QDGSYLAEFLLEKGYEVHGIKRRASS   37 (190)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEECC----
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9957787--89999999999785989999789875


No 465
>>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} (A:)
Probab=34.30  E-value=16  Score=16.82  Aligned_cols=24  Identities=38%  Similarity=0.428  Sum_probs=17.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             899823000788874899999999852
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      |+..|.-   |+|||-++..|++.|..
T Consensus        13 I~i~G~~---GsGKSTla~~La~~l~~   36 (184)
T 1y63_A           13 ILITGTP---GTGKTSMAEMIAAELDG   36 (184)
T ss_dssp             EEEECST---TSSHHHHHHHHHHHSTT
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHCC
T ss_conf             9998299---99989999999998589


No 466
>>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326)
Probab=34.18  E-value=30  Score=14.90  Aligned_cols=20  Identities=5%  Similarity=-0.067  Sum_probs=14.3

Q ss_pred             ECCCCHHHHHHHHHHHCCCC
Q ss_conf             41553578999887401000
Q gi|254780401|r  229 SGIADTEKFFTTVRQLGALI  248 (338)
Q Consensus       229 sGIa~P~~F~~~L~~~g~~i  248 (338)
                      .-|+.|.++...++......
T Consensus       238 IVIgTPgRLldlik~~~l~L  257 (326)
T 3fho_A          238 IVIGTPGTVMDLMKRRQLDA  257 (326)
T ss_dssp             EEEECHHHHHHHHHTTCSCC
T ss_pred             EEECCCCHHHHHHHHHCCCH
T ss_conf             99569814999998723663


No 467
>>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} (A:1-144)
Probab=34.10  E-value=30  Score=14.89  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=26.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +..||||-.  =..|++.|.++|+.+.++.|--..
T Consensus         6 lVtGatG~i--G~~l~~~L~~~g~~v~~~~~~~~~   38 (144)
T 2gas_A            6 LILGPTGAI--GRHIVWASIKAGNPTYALVRKTIT   38 (144)
T ss_dssp             EEESTTSTT--HHHHHHHHHHHTCCEEEEECCSCC
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             998999689--999999999788949999778643


No 468
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=34.09  E-value=30  Score=14.89  Aligned_cols=89  Identities=20%  Similarity=0.244  Sum_probs=57.0

Q ss_pred             ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC---CC--C-CCC
Q ss_conf             82300078887489999999985247315987604578777755871456788770421233220576---34--6-520
Q gi|254780401|r   49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV---TI--V-TSD  122 (338)
Q Consensus        49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p---v~--V-~~~  122 (338)
                      |.-+...-||--|-+....+.|++.|+++.++|-...                    ..+.-+++...   ++  + ..+
T Consensus        28 ~~~~~~~~~~~~P~a~e~I~~L~~~Gi~v~IiTGD~~--------------------~~a~~ia~~lgI~~v~a~v~p~~   87 (164)
T 2iye_A           28 IDTIIFDKTGTLPNLKDYLEKLKNEGLKIIILSGDKE--------------------DKVKELSKELNIQEYYSNLSPED   87 (164)
T ss_dssp             CCEEEEESTTTTSCCHHHHHHHHGGGCEEEEECSSCH--------------------HHHHHHHHHHTCSEEECSCCHHH
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCC--------------------CCCHHHHHHHCHHHHHHCCCHHH
T ss_conf             9999991885231299999999975992798238742--------------------11014799853025340235788


Q ss_pred             HHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf             12256641024574799718322344123069999
Q gi|254780401|r  123 RKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIV  157 (338)
Q Consensus       123 R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl  157 (338)
                      +.+-++.+.+.+-.++..-||.-+...-+--++-+
T Consensus        88 K~~iv~~L~~~g~~Va~VGDg~ND~~aL~~AdVGI  122 (164)
T 2iye_A           88 KVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV  122 (164)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSTTTHHHHHHSSEEE
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCEEE
T ss_conf             98888455225605899942310466886487999


No 469
>>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} (A:)
Probab=34.04  E-value=21  Score=16.02  Aligned_cols=25  Identities=40%  Similarity=0.513  Sum_probs=16.2

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|+|||-++..++.
T Consensus        16 ~~~~KIvivGd---~~vGKTSLl~r~~~   40 (187)
T 2a9k_A           16 LALHKVIMVGS---GGVGKSALTLQFMY   40 (187)
T ss_dssp             -CEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred             CCEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             63039999997---99688999999972


No 470
>>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} (A:)
Probab=33.99  E-value=20  Score=16.08  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=18.0

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             433889889982300078887489999999
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      +++..+.|+.||+   +|.|||-++..+.+
T Consensus         3 ~~~~~~KivilGd---~~vGKTsLi~r~~~   29 (184)
T 1m7b_A            3 NQNVKCKIVVVGD---SQCGKTALLHVFAK   29 (184)
T ss_dssp             ---CEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred             CCCEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             8715579999998---99498999999971


No 471
>>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} (A:121-222)
Probab=33.96  E-value=30  Score=14.88  Aligned_cols=34  Identities=6%  Similarity=-0.096  Sum_probs=29.8

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             8898899823000788874899999999852473
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNL   75 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~   75 (338)
                      .|..+|.|+||.+++...+=.-.-|.+++.+-|.
T Consensus         2 ~p~~~i~v~nl~v~~l~~~~~~~~l~~~f~~~G~   35 (102)
T 3dxb_A            2 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA   35 (102)
T ss_dssp             CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             4104678887426223567888999999976597


No 472
>>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A (A:)
Probab=33.92  E-value=30  Score=14.87  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             63465201225664102457479971832
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGF  144 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlDDGf  144 (338)
                      -|.+..+=.+|.+.+.+..+|+||+|..+
T Consensus        31 ~v~~a~~~~~al~~l~~~~~d~iilD~~l   59 (127)
T 2gkg_A           31 TVDETTDGKGSVEQIRRDRPDLVVLAVDL   59 (127)
T ss_dssp             EEEEECCHHHHHHHHHHHCCSEEEEESBC
T ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEEECC
T ss_conf             99998684999999981799799743001


No 473
>>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, GALE, NAD, SYK, UDP, N- acetylglucosamine, N-acetylgalactosamine, UDP-GLC; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} (A:)
Probab=33.85  E-value=30  Score=14.86  Aligned_cols=33  Identities=12%  Similarity=0.042  Sum_probs=27.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|....
T Consensus        31 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~~   63 (352)
T 1sb8_A           31 LITGVAG--FIGSNLLETLLKLDQKVVGLDNFATG   63 (352)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9966878--89999999999784989999788876


No 474
>>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate guanyltransferase, structural genomics; 2.20A {Thermus thermophilus HB8} (A:1-263)
Probab=33.77  E-value=18  Score=16.45  Aligned_cols=39  Identities=10%  Similarity=-0.067  Sum_probs=30.1

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8898899823000788874899999999852473159876045787
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      .|.|.+-|       .|+.|+..+..+.|.+.|.+-.++..||...
T Consensus        24 ~PK~Li~v-------~G~kpli~~~i~~l~~~gi~~iivv~gy~~~   62 (263)
T 2cu2_A           24 RPKPFLPL-------FEGKTLLEATLERLAPLVPPERTLLAVRRDQ   62 (263)
T ss_dssp             BCGGGCBC-------GGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG
T ss_pred             CCCCCEEC-------CCCCCHHHHHHHHHHCCCCCCCEEEEEEHHH
T ss_conf             99331006-------9999899999997636588676399972789


No 475
>>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:100-257)
Probab=33.67  E-value=14  Score=17.17  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=24.4

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -+++.|    .||||=||+.-.|-..+.......+.+-
T Consensus         8 ~~iv~i----agGtGIaP~~s~l~~~~~~~~~~~v~l~   41 (158)
T 2qdx_A            8 KHLYLL----STGTGMAPFLSVIQDPETYERYEKVILV   41 (158)
T ss_dssp             SEEEEE----EEGGGGHHHHHHTTCHHHHHHCSEEEEE
T ss_pred             CEEEEE----ECCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             327999----8067733210666666764368768999


No 476
>>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* (A:113-272)
Probab=33.56  E-value=17  Score=16.55  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=24.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +-|||.|    +||||=||+...|-..+.........+-
T Consensus         8 ~~~ivli----agGtGItP~~sil~~l~~~~~~~~v~l~   42 (160)
T 2bgi_A            8 GKRLWFL----ATGTGIAPFASLMREPEAYEKFDEVIMM   42 (160)
T ss_dssp             CSEEEEE----EEGGGGHHHHHHTTCGGGGTSCSEEEEE
T ss_pred             CCCCEEE----ECCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             6540478----6267764155888877641675169999


No 477
>>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} (A:)
Probab=33.49  E-value=30  Score=14.82  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.+||||  -+=.+|++.|.++|+.+.++.|-
T Consensus        15 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~   44 (342)
T 1y1p_A           15 LVTGANG--FVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9989988--99999999999785989999688


No 478
>>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} (A:)
Probab=33.48  E-value=30  Score=14.82  Aligned_cols=93  Identities=22%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHH-CCC---CEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC
Q ss_conf             8898899823000788874899999999852-473---159876045787777558714567887704212332205763
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVID-KNL---KPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT  117 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~---~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv  117 (338)
                      ..|-.||.||+     +..|++..+.+.+-. +|.   .+-|-|.|=.....+..    .+..+..      .++.++--
T Consensus         8 ~~ilFVC~gN~-----cRSpmAE~i~~~~~~~~~l~~~~~~v~SAG~~~~~~~~~----~~~~a~~------~l~~~gi~   72 (161)
T 1d1q_A            8 ISVAFIALGNF-----CRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGES----PDHRTVS------ICKQHGVK   72 (161)
T ss_dssp             EEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCC----CCHHHHH------HHHHTTCC
T ss_pred             CEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC----CCHHHHH------HHHHCCCC
T ss_conf             76999869838-----499999999999998769976647885343466778999----8999999------99984999


Q ss_pred             CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf             4652012256641024574799718322344123
Q gi|254780401|r  118 IVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQA  151 (338)
Q Consensus       118 ~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~r  151 (338)
                      .-+..|  .+..-.-..+|+||.-|--|+..+.+
T Consensus        73 ~~~~s~--~l~~~~~~~~DlIi~M~~~~~~~l~~  104 (161)
T 1d1q_A           73 INHKGK--QIKTKHFDEYDYIIGMDESNINNLKK  104 (161)
T ss_dssp             CCCCBC--BCCGGGGGTCSEEEESSHHHHHHHHH
T ss_pred             CCCCCC--CCCHHHHHHCCEEEECCHHHHHHHHH
T ss_conf             887000--07775752389999888899999998


No 479
>>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} (A:1-120,A:185-217)
Probab=33.46  E-value=21  Score=16.03  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=15.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             8998230007888748999999998
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      |+.+|.   =|+|||-++..|++.+
T Consensus         8 I~IiG~---PGSGKTTlak~LA~~l   29 (153)
T 3be4_A            8 LILIGA---PGSGKGTQCEFIKKEY   29 (153)
T ss_dssp             EEEEEC---TTSSHHHHHHHHHHHH
T ss_pred             EEEECC---CCCCHHHHHHHHHHHH
T ss_conf             999899---9998799999999987


No 480
>>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} (A:162-365)
Probab=33.28  E-value=14  Score=17.28  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=16.4

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             89982300078887489999999985
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      |+.+|.-   |+|||-++..|++.+.
T Consensus        12 I~i~G~~---GsGKtTla~~La~~~g   34 (204)
T 1lw7_A           12 VAILGGE---SSGKSVLVNKLAAVFN   34 (204)
T ss_dssp             EEEECCT---TSHHHHHHHHHHHHTT
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHC
T ss_conf             9998278---7887999999999968


No 481
>>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} (A:100-248)
Probab=33.13  E-value=22  Score=15.83  Aligned_cols=34  Identities=15%  Similarity=-0.003  Sum_probs=21.9

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -++|.    .+||||=||+.-.+-..+.........+-
T Consensus         8 ~~ii~----iagG~GItP~~s~i~~~~~~~~~~~v~l~   41 (149)
T 1fdr_A            8 ETLWM----LATGTAIGPYLSILRLGKDLDRFKNLVLV   41 (149)
T ss_dssp             SEEEE----EEEGGGGHHHHHHHHHCCSCTTCSEEEEE
T ss_pred             CEEEE----EEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             77899----99278756289999998863886379998


No 482
>>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase; 2.50A {Hepatitis c virus} (A:203-343,A:497-638)
Probab=33.09  E-value=31  Score=14.78  Aligned_cols=122  Identities=13%  Similarity=0.057  Sum_probs=54.8

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHH---HHHHHCCCCHHHHHHHHCCCCCCCCCEEE
Q ss_conf             230699996184335665537613652100255665145442044124---57763135011122220132111686389
Q gi|254780401|r  150 QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKN---VISSIKNKSVYFAKLKPRLTFDLSGKKVL  226 (338)
Q Consensus       150 ~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~k~v~  226 (338)
                      ..+.-+|++.|.-+--=.-+++.|+|-|-...+-.--+     -.+.+   .+..+-+     ..+-+....++ +.-..
T Consensus       125 ~~~~qvIllSATpP~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~  193 (283)
T 1cu1_A          125 AGARLVVLATATPPGSVSGMFDSSVLCECYDAGCAWYE-----LTPAETSVRLRAYLN-----TPGLPVCQDHL-EFWES  193 (283)
T ss_dssp             TTCSEEEEEESSCTTCCSSBCCHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHH-----STTSCBCCCCH-HHHHH
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHC-----CCCCHHHHHHH-HHHHH
T ss_conf             87518997346666221577731566574550230112-----762788889998725-----99956666568-89999


Q ss_pred             EEECCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCC
Q ss_conf             8741553578-99988740100001221433234898999999997564798799854663438233
Q gi|254780401|r  227 AFSGIADTEK-FFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKR  292 (338)
Q Consensus       227 afsGIa~P~~-F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~  292 (338)
                      .|||..+++. |.+.-++.|.+..-...      |    =..+..+|+...---=+.=|...|++..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T 1cu1_A          194 VFTGLTHIDAHFLSQTKQAGDNFPYLVA------Y----QATVCARAQAPPPSWDQMWKCLIRLKPT  250 (283)
T ss_dssp             HHHTCCSCCHHHHHHHHHHCCSCHHHHH------H----HHHHHHHTTCCCSCCSGGGGGGGGGGGG
T ss_pred             HHCCCCCCCHHHHHHHHHCCCCCHHHHH------H----HHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf             8607756728776688754888410068------8----9999886279989867233022105767


No 483
>>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} (A:)
Probab=33.04  E-value=31  Score=14.77  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.+|+||=.-+=..+|+.|.++|.++.+.+|-
T Consensus        18 lVTGa~~~~GIG~aiA~~la~~Ga~Vil~~r~   49 (271)
T 3ek2_A           18 LLTGLLSNRSIAYGIAKACKREGAELAFTYVG   49 (271)
T ss_dssp             EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99899886189999999999869999999588


No 484
>>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B (A:)
Probab=33.04  E-value=22  Score=15.88  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=10.9

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      .+.++.+-.+|.+.+.+..+|+||+|
T Consensus        26 ~v~~a~~~~~al~~l~~~~~dlillD   51 (139)
T 2jk1_A           26 DVLTAQGAEAAIAILEEEWVQVIICD   51 (139)
T ss_dssp             CEEEESSHHHHHHHHHHSCEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf             99996549999999983789889963


No 485
>>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* (A:)
Probab=32.97  E-value=21  Score=15.93  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=17.2

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             3889889982300078887489999999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ...+.|+.||+   +|.|||-++..+..
T Consensus        20 ~~~~kivivG~---~~vGKTsli~r~~~   44 (189)
T 2gf9_A           20 DYMFKLLLIGN---SSVGKTSFLFRYAD   44 (189)
T ss_dssp             SEEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred             CEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf             85889999999---99298999999971


No 486
>>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} (A:)
Probab=32.84  E-value=18  Score=16.36  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=15.4

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHH
Q ss_conf             3889889982300078887489999
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALA   65 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~   65 (338)
                      ...+.|+.||+   +|+|||-++..
T Consensus        27 ~~~~KivivGd---~~VGKTsli~r   48 (192)
T 2b6h_A           27 KKQMRILMVGL---DAAGKTTILYK   48 (192)
T ss_dssp             TSCEEEEEEES---TTSSHHHHHHH
T ss_pred             CCEEEEEEECC---CCCCHHHHHHH
T ss_conf             87589999999---99888999999


No 487
>>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors; HET: GTP; 1.90A {Homo sapiens} (A:)
Probab=32.81  E-value=24  Score=15.60  Aligned_cols=22  Identities=23%  Similarity=0.617  Sum_probs=15.6

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             9889982300078887489999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      +.|+.||+   +|+|||-++..+..
T Consensus         4 ~KivlvGd---~~vGKTsLi~r~~~   25 (167)
T 1c1y_A            4 YKLVVLGS---GGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECS---TTSSHHHHHHHHHH
T ss_pred             EEEEEECC---CCCCHHHHHHHHHC
T ss_conf             69999998---99899999999970


No 488
>>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} (A:)
Probab=32.80  E-value=31  Score=14.75  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=13.8

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      -|..+.+-.+|...+.+..+|+||+|
T Consensus        29 ~v~~a~~~~~al~~l~~~~~dliilD   54 (123)
T 1xhf_A           29 DVFEATDGAEXHQILSEYDINLVIXD   54 (123)
T ss_dssp             EEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred             EEEEECCHHHHHHHHHHCCCCHHHHC
T ss_conf             89998986999999983474322200


No 489
>>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} (A:147-275)
Probab=32.55  E-value=22  Score=15.84  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=17.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHC
Q ss_conf             0007888748999999998524
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~   73 (338)
                      +.+||||=||+.-.+-..+...
T Consensus         5 ~iA~G~GIaP~~s~l~~~~~~~   26 (129)
T 1umk_A            5 MIAGGTGITPMLQVIRAIMKDP   26 (129)
T ss_dssp             EEEEGGGHHHHHHHHHHHHTCT
T ss_pred             EEECCCCCCHHHHHHHHHHHCC
T ss_conf             9973730686899999998756


No 490
>3cf2_A P97VCP IN COMPLEX WITH ADPAMP-Pnp {Mus musculus} (A:)
Probab=32.54  E-value=15  Score=17.02  Aligned_cols=30  Identities=30%  Similarity=0.219  Sum_probs=20.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899823000788874899999999852473159876
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ++..|.-   |||||-++.++|+.+.   .....++
T Consensus       241 ill~Gpp---GtGKT~la~~ia~~~~---~~~~~i~  270 (806)
T 3cf2_A          241 ILLYGPP---GTGKTLIARAVANETG---AFFFLIN  270 (806)
T ss_dssp             EEEECCT---TSCHHHHHHHHHTTTT---CEEEEEE
T ss_pred             CCCCCCC---CCCCHHHHHHHHHHHH---HHHHHHC
T ss_conf             2134422---2330234577666654---4322202


No 491
>>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} (A:)
Probab=32.53  E-value=31  Score=14.72  Aligned_cols=28  Identities=18%  Similarity=0.145  Sum_probs=17.8

Q ss_pred             CCCCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             6433889889982300078887489999999
Q gi|254780401|r   38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ....-...|+.||.   .|+|||-+.-.|++
T Consensus        43 ~~~~~~~ki~ivG~---~~vGKTsLl~~l~~   70 (193)
T 2ged_A           43 GGGSYQPSIIIAGP---QNSGKTSLLTLLTT   70 (193)
T ss_dssp             ---CCCCEEEEECC---TTSSHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECC---CCCCHHHHHHHHHC
T ss_conf             88765628999898---99974889999863


No 492
>>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* (A:)
Probab=32.39  E-value=28  Score=15.11  Aligned_cols=32  Identities=16%  Similarity=0.029  Sum_probs=25.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +.+||||  =+=.+|++.|.++|+.+.++.|.-.
T Consensus         5 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~   36 (364)
T 2v6g_A            5 LIVGVTG--IIGNSLAEILPLADTPGGPWKVYGV   36 (364)
T ss_dssp             EEETTTS--HHHHHHHHHTTSTTCTTCSEEEEEE
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             9968998--8999999999868997316899996


No 493
>>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} (A:117-270)
Probab=32.31  E-value=23  Score=15.69  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=23.4

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf             89889982300078887489999999985247--3159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN--LKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g--~~~~ils   81 (338)
                      .-|+|.|    +||||=||+.-.|-..++...  .....+-
T Consensus        20 ~~~ivlI----agGtGIaP~~s~l~~~~~~~~~~~~~v~l~   56 (154)
T 2cnd_A           20 ARRLAMI----CGGSGITPMYQIIQAVLRDQPEDHTEMHLV   56 (154)
T ss_dssp             CSEEEEE----EEGGGHHHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred             CCEEEEE----ECCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             8538999----657335339999999997387777349999


No 494
>>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} (A:)
Probab=32.26  E-value=25  Score=15.47  Aligned_cols=50  Identities=6%  Similarity=0.129  Sum_probs=29.5

Q ss_pred             HHCCCCCCCCCHHHHHHHHCCCC-CCEEEEC------CCC----CCCCCCCEEEEEEECCC
Q ss_conf             20576346520122566410245-7479971------832----23441230699996184
Q gi|254780401|r  112 ARRAVTIVTSDRKIGVQMLLQEG-VDIIIMD------DGF----HSADLQADFSLIVVNSH  161 (338)
Q Consensus       112 a~~~pv~V~~~R~~~~~~~~~~~-~diiIlD------DGf----Qh~~l~rdl~Ivl~d~~  161 (338)
                      .+.+.|..+.+-.+|...+.+.. +|+|++|      ||+    +=++..++.-++++.+.
T Consensus        25 ~~~~~v~~a~~~~~Al~~l~~~~~~divllD~~mP~~dG~~ll~~ir~~~p~~pvI~lT~~   85 (151)
T 3kcn_A           25 SFDFEVTTCESGPEALACIKKSDPFSVIXVDXRXPGXEGTEVIQKARLISPNSVYLXLTGN   85 (151)
T ss_dssp             TTTSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECG
T ss_pred             HCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             8799899976789999999856997099984899898759999999981999879997347


No 495
>>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A* (B:)
Probab=32.21  E-value=26  Score=15.32  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             33889889982300078887489999999
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ....+.|+.||+   +|+|||-++..+++
T Consensus         7 ~~~~~KivivG~---~~vGKTsLi~~~~~   32 (197)
T 2rex_B            7 VVARCKLVLVGD---VQCGKTAMLQVLAK   32 (197)
T ss_dssp             ---CEEEEEECS---TTSSHHHHHHHHHH
T ss_pred             CCEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             842789999999---99798899999974


No 496
>>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:236-373)
Probab=32.11  E-value=32  Score=14.67  Aligned_cols=60  Identities=17%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf             1686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r  220 LSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK  284 (338)
Q Consensus       220 l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK  284 (338)
                      ..++++++|| .+..-+.+.+.|++.|+.+.     .=|...+..+-+...+..++... .+|+|.-
T Consensus        30 ~~~~~~lIf~~t~~~~~~l~~~L~~~~~~~~-----~~~~~~~~~~r~~~~~~f~~~~~~~lv~t~~   91 (138)
T 2v1x_A           30 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAG-----AYHANLEPEDKTTVHRKWSANEIQVVVATVA   91 (138)
T ss_dssp             TTTCEEEEECSSHHHHHHHHHHHHHTTCCEE-----EECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred             CCCCCCEEEEEEEEHHHHHHHHHHHCCCEEE-----ECCCCCHHHHHHHHHHHHHCCCCCEEEEECH
T ss_conf             3577616997542214567788764186033-----1047522989999999997799768998450


No 497
>>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} (A:1-139)
Probab=32.08  E-value=32  Score=14.67  Aligned_cols=29  Identities=10%  Similarity=0.164  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             63465201225664102457479971832
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGF  144 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlDDGf  144 (338)
                      -|.+..+=.+|...+.+..+|+||+|-.+
T Consensus        26 ~v~~a~~~~~al~~l~~~~~d~iilD~~l   54 (139)
T 1ny5_A           26 KVESAERGKEAYKLLSEKHFNVVLLDLLL   54 (139)
T ss_dssp             EEEEESSHHHHHHHHHHSCCSEEEEESBC
T ss_pred             EEEEECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf             99998999999999861899899982999


No 498
>>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A* (A:)
Probab=32.01  E-value=28  Score=15.02  Aligned_cols=40  Identities=15%  Similarity=0.193  Sum_probs=16.6

Q ss_pred             CCCHHHHHHHHCCCCCCEEEECCC-----CCCC-CCCCEEEEEEEC
Q ss_conf             520122566410245747997183-----2234-412306999961
Q gi|254780401|r  120 TSDRKIGVQMLLQEGVDIIIMDDG-----FHSA-DLQADFSLIVVN  159 (338)
Q Consensus       120 ~~~R~~~~~~~~~~~~diiIlDDG-----fQh~-~l~rdl~Ivl~d  159 (338)
                      +.+...-...+.+.++|+||.--|     ++.. ---+++..+++|
T Consensus       135 g~~~~~~~~~~~~~~~~iii~Tpgrl~~~~~~~~~~l~~l~~lVlD  180 (237)
T 3bor_A          135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD  180 (237)
T ss_dssp             -------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred             CCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             0441478898750687189958557777876088655675699860


No 499
>>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis H37RV} PDB: 2z2j_A 2z2k_A 2jrc_A (A:)
Probab=32.00  E-value=12  Score=17.61  Aligned_cols=25  Identities=16%  Similarity=-0.059  Sum_probs=11.6

Q ss_pred             CCCCCCCCCCCCHHHHHCCHHHHHHHH
Q ss_conf             433566553761365210025566514
Q gi|254780401|r  161 HRGLGNGLVFPAGPLRVPLSRQLSYVD  187 (338)
Q Consensus       161 ~~~~gn~~llPaGpLREp~~~~l~rad  187 (338)
                      +.|+|.=++=|.|--+-  +++|+...
T Consensus        98 dlp~Gkirlk~~Gs~gG--HNGlkSI~  122 (191)
T 2z2i_A           98 DLEFGRIRLKIGGGEGG--HNGLRSVV  122 (191)
T ss_dssp             TSCTTCEEEEESCCCTT--CHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCC--HHHHHHHH
T ss_conf             78775189836997765--16899999


No 500
>>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infectious disease, parasitic protozoan; 1.80A {Entamoeba histolytica hm-1} PDB: 3js5_A* 3ily_A 3ido_A* (A:)
Probab=31.98  E-value=32  Score=14.66  Aligned_cols=48  Identities=21%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCC
Q ss_conf             43388988998230007888748999999998---524731598760457877775
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAV---IDKNLKPGFLSRGYGRKSRIS   91 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l---~~~g~~~~ilsRGYg~~~~~~   91 (338)
                      +.+..|-.||.||+     +..||+..|.+.+   +..+-++-|-|.|-.....+.
T Consensus         2 ~~~~~iLFVC~~N~-----cRSpmAEal~~~~~~~~~~~~~~~v~SAG~~~~~~~~   52 (161)
T 3jvi_A            2 PGSMKLLFVCLGNI-----CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQ   52 (161)
T ss_dssp             --CEEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTC
T ss_pred             CCCEEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf             99759999879848-----7999999999999986799986589942203455787


Done!