Query gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 338 No_of_seqs 164 out of 1985 Neff 6.7 Searched_HMMs 33803 Date Wed Jun 1 12:45:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780401.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1xjc_A MOBB protein homolog; 96.7 0.0057 1.7E-07 41.3 6.4 43 44-88 4-46 (169) 2 >2www_A Methylmalonic aciduria 96.3 0.0056 1.6E-07 41.4 4.3 147 40-198 70-226 (262) 3 >2px0_A Flagellar biosynthesis 96.0 0.024 7E-07 36.9 6.6 79 46-143 10-93 (187) 4 >1np6_A Molybdopterin-guanine 96.0 0.025 7.5E-07 36.7 6.5 43 41-85 3-45 (174) 5 >1ihu_A Arsenical pump-driving 95.7 0.013 3.7E-07 38.8 3.9 44 43-87 6-49 (303) 6 >1yrb_A ATP(GTP)binding protei 95.6 0.014 4E-07 38.6 3.8 154 41-196 11-183 (262) 7 >1vma_A Cell division protein 95.5 0.025 7.3E-07 36.8 5.0 79 46-143 107-195 (306) 8 >1nij_A Hypothetical protein Y 95.3 0.0053 1.6E-07 41.5 1.0 137 43-196 3-162 (204) 9 >1hyq_A MIND, cell division in 95.3 0.02 5.9E-07 37.4 3.9 39 45-84 3-41 (263) 10 >3c8u_A Fructokinase; YP_61236 95.2 0.03 8.7E-07 36.2 4.5 34 46-81 24-57 (146) 11 >3fgn_A Dethiobiotin synthetas 95.0 0.03 8.9E-07 36.2 4.1 42 39-81 21-62 (251) 12 >3cwq_A Para family chromosome 95.0 0.027 8.1E-07 36.4 3.9 36 45-81 1-36 (209) 13 >1qzx_A SRP54, signal recognit 94.9 0.027 8E-07 36.5 3.6 82 44-144 7-99 (193) 14 >2f1r_A Molybdopterin-guanine 94.8 0.025 7.3E-07 36.8 3.2 31 53-83 9-39 (121) 15 >1odf_A YGR205W, hypothetical 94.8 0.11 3.1E-06 32.3 6.4 34 48-81 33-69 (211) 16 >2oze_A ORF delta'; para, walk 94.8 0.023 6.9E-07 36.9 3.0 40 42-82 34-73 (298) 17 >2npi_A Protein CLP1; CLP1-PCF 94.7 0.05 1.5E-06 34.6 4.6 42 41-85 19-61 (211) 18 >2ph1_A Nucleotide-binding pro 94.6 0.033 9.8E-07 35.9 3.4 45 39-84 13-57 (228) 19 >1j8m_F SRP54, signal recognit 94.6 0.042 1.2E-06 35.1 3.9 28 54-81 15-42 (193) 20 >3iqw_A Tail-anchored protein 94.5 0.03 8.8E-07 36.2 3.1 43 43-86 14-56 (334) 21 >2woo_A ATPase GET3; tail-anch 94.5 0.034 1E-06 35.8 3.3 43 43-86 17-59 (329) 22 >1cp2_A CP2, nitrogenase iron 94.4 0.034 1E-06 35.8 3.2 34 54-87 9-42 (269) 23 >3e1s_A Exodeoxyribonuclease V 94.4 0.24 7.2E-06 29.7 7.5 27 55-81 64-90 (215) 24 >2qmo_A Dethiobiotin synthetas 94.3 0.034 1E-06 35.8 2.9 37 46-83 3-39 (220) 25 >1wcv_1 SOJ, segregation prote 94.3 0.038 1.1E-06 35.4 3.2 43 43-86 5-47 (257) 26 >2afh_E Nitrogenase iron prote 94.3 0.035 1E-06 35.7 3.0 32 54-85 10-41 (289) 27 >3end_A Light-independent prot 94.3 0.035 1E-06 35.7 3.0 41 45-87 42-82 (307) 28 >1byi_A Dethiobiotin synthase; 94.2 0.036 1.1E-06 35.6 2.9 37 45-82 2-38 (224) 29 >1g3q_A MIND ATPase, cell divi 94.2 0.057 1.7E-06 34.2 4.0 38 45-83 3-40 (237) 30 >1ihu_A Arsenical pump-driving 94.1 0.038 1.1E-06 35.4 3.0 42 43-85 22-63 (286) 31 >1a7j_A Phosphoribulokinase; t 94.0 0.074 2.2E-06 33.4 4.3 38 44-83 5-42 (290) 32 >3fkq_A NTRC-like two-domain p 94.0 0.037 1.1E-06 35.6 2.7 42 44-86 5-46 (235) 33 >3kjh_A CO dehydrogenase/acety 93.9 0.026 7.6E-07 36.6 1.7 30 54-83 8-37 (254) 34 >3igf_A ALL4481 protein; two-d 93.8 0.032 9.4E-07 36.0 2.1 36 45-81 2-37 (297) 35 >3ea0_A ATPase, para family; a 93.5 0.073 2.1E-06 33.4 3.5 40 44-84 4-44 (245) 36 >1w78_A FOLC bifunctional prot 93.4 0.68 2E-05 26.5 8.8 131 38-179 43-184 (286) 37 >2g0t_A Conserved hypothetical 93.3 0.18 5.3E-06 30.6 5.2 46 37-83 3-48 (191) 38 >3ez2_A Plasmid partition prot 93.0 0.073 2.2E-06 33.4 2.8 41 44-85 6-52 (296) 39 >3ez9_A Para; DNA binding, win 92.8 0.11 3.2E-06 32.2 3.5 46 42-88 4-55 (298) 40 >3cio_A ETK, tyrosine-protein 92.8 0.16 4.6E-06 31.1 4.3 41 41-82 101-141 (299) 41 >2woj_A ATPase GET3; tail-anch 92.4 0.11 3.2E-06 32.3 3.1 43 43-86 16-60 (354) 42 >1bif_A 6-phosphofructo-2-kina 92.4 0.049 1.5E-06 34.6 1.2 35 46-83 42-76 (231) 43 >2axn_A 6-phosphofructo-2-kina 92.3 0.046 1.4E-06 34.9 1.0 38 44-84 10-47 (218) 44 >2j9r_A Thymidine kinase; TK1, 92.3 0.37 1.1E-05 28.4 5.7 35 46-83 31-65 (167) 45 >3io3_A DEHA2D07832P; chaperon 91.7 0.15 4.4E-06 31.2 3.1 43 43-86 16-60 (348) 46 >1zu4_A FTSY; GTPase, signal r 91.5 0.16 4.8E-06 30.9 3.2 32 50-81 13-44 (203) 47 >3k9g_A PF-32 protein; ssgcid, 91.5 0.24 7E-06 29.8 3.9 44 39-83 22-65 (267) 48 >2b8t_A Thymidine kinase; deox 90.9 0.58 1.7E-05 27.0 5.4 26 56-81 22-47 (155) 49 >3bfv_A CAPA1, CAPB2, membrane 90.7 0.2 6.1E-06 30.2 3.0 42 40-82 78-119 (271) 50 >3bos_A Putative DNA replicati 90.4 0.67 2E-05 26.6 5.4 36 43-81 52-87 (175) 51 >1j6u_A UDP-N-acetylmuramate-a 89.7 0.76 2.2E-05 26.2 5.2 67 45-116 2-69 (195) 52 >3eag_A UDP-N-acetylmuramate:L 89.6 0.51 1.5E-05 27.4 4.3 43 43-89 2-44 (221) 53 >1rj9_A FTSY, signal recogniti 89.3 0.3 9E-06 29.0 3.0 31 53-83 14-44 (198) 54 >2get_A Pantothenate kinase; h 88.8 0.37 1.1E-05 28.4 3.1 29 53-81 97-127 (248) 55 >1o5z_A Folylpolyglutamate syn 88.2 2.1 6.1E-05 23.1 8.5 119 35-157 43-176 (304) 56 >3e70_C DPA, signal recognitio 88.1 0.46 1.4E-05 27.8 3.2 29 54-82 23-51 (200) 57 >3hn7_A UDP-N-acetylmuramate-L 87.1 0.71 2.1E-05 26.4 3.7 39 43-85 2-40 (255) 58 >1ls1_A Signal recognition par 87.0 0.54 1.6E-05 27.2 3.0 35 46-83 9-43 (185) 59 >2z4s_A Chromosomal replicatio 86.3 0.47 1.4E-05 27.7 2.4 31 43-76 130-160 (262) 60 >3cmw_A Protein RECA, recombin 86.1 0.58 1.7E-05 27.0 2.8 27 55-81 32-58 (274) 61 >3e2i_A Thymidine kinase; Zn-b 86.1 1.8 5.4E-05 23.5 5.3 72 55-143 37-110 (167) 62 >3cmw_A Protein RECA, recombin 85.8 0.61 1.8E-05 26.9 2.8 27 55-81 36-62 (279) 63 >1nks_A Adenylate kinase; ther 85.3 0.62 1.8E-05 26.8 2.6 32 55-86 10-41 (194) 64 >3cmw_A Protein RECA, recombin 84.9 0.76 2.2E-05 26.2 2.9 27 55-81 43-69 (289) 65 >2wtz_A UDP-N-acetylmuramoyl-L 84.8 2.7 8.1E-05 22.3 5.7 43 37-83 12-54 (241) 66 >2am1_A SP protein, UDP-N-acet 84.8 0.71 2.1E-05 26.4 2.7 40 42-86 17-56 (224) 67 >2ocp_A DGK, deoxyguanosine ki 83.9 0.41 1.2E-05 28.1 1.2 40 46-88 4-44 (241) 68 >2eyu_A Twitching motility pro 83.6 3.4 0.0001 21.6 5.8 35 49-83 25-63 (261) 69 >1nn5_A Similar to deoxythymid 83.5 1.9 5.7E-05 23.3 4.5 41 44-87 10-50 (215) 70 >3dmq_A RNA polymerase-associa 83.3 0.77 2.3E-05 26.2 2.4 27 55-81 30-58 (302) 71 >3do6_A Formate--tetrahydrofol 82.9 1.9 5.6E-05 23.4 4.3 196 41-282 40-268 (295) 72 >3b9q_A Chloroplast SRP recept 82.9 1 3E-05 25.3 2.9 35 46-83 11-45 (200) 73 >2og2_A Putative signal recogn 82.9 1 3E-05 25.3 2.9 35 46-83 11-45 (200) 74 >3cmu_A Protein RECA, recombin 82.8 0.86 2.5E-05 25.8 2.5 27 55-81 43-69 (286) 75 >3cmu_A Protein RECA, recombin 82.7 2.5 7.5E-05 22.5 4.9 27 55-81 36-62 (281) 76 >2gza_A Type IV secretion syst 82.4 3.8 0.00011 21.3 5.6 29 55-84 41-69 (218) 77 >1wrb_A DJVLGB; RNA helicase, 82.4 1.6 4.6E-05 24.0 3.6 103 55-160 69-182 (253) 78 >1xp8_A RECA protein, recombin 82.2 1.2 3.6E-05 24.7 3.1 27 55-81 13-39 (215) 79 >3cmw_A Protein RECA, recombin 81.3 1.2 3.6E-05 24.8 2.8 27 55-81 36-62 (279) 80 >1w36_D RECD, exodeoxyribonucl 81.3 1.3 3.8E-05 24.6 2.9 28 54-81 62-93 (263) 81 >2w58_A DNAI, primosome compon 81.2 1.4 4.1E-05 24.3 3.1 36 43-81 54-89 (202) 82 >3cmu_A Protein RECA, recombin 81.2 1.1 3.2E-05 25.1 2.5 27 55-81 36-62 (278) 83 >1kht_A Adenylate kinase; phos 81.1 1 3E-05 25.3 2.4 32 54-85 11-42 (192) 84 >4tmk_A Protein (thymidylate k 81.0 2.6 7.8E-05 22.4 4.4 40 45-87 5-44 (213) 85 >2jfg_A UDP-N-acetylmuramoylal 81.0 2.9 8.5E-05 22.1 4.6 35 44-82 2-36 (197) 86 >2i5e_A Hypothetical protein M 80.8 4.3 0.00013 20.9 6.5 38 52-89 9-62 (170) 87 >1osn_A Thymidine kinase, VZV- 80.7 1.9 5.6E-05 23.4 3.6 35 46-83 15-49 (341) 88 >1jbw_A Folylpolyglutamate syn 80.6 4.3 0.00013 20.8 7.2 115 38-157 33-164 (297) 89 >3cmu_A Protein RECA, recombin 80.5 1.2 3.6E-05 24.7 2.6 27 55-81 36-62 (278) 90 >1sxj_A Activator 1 95 kDa sub 80.3 2.8 8.4E-05 22.1 4.4 34 42-81 76-109 (208) 91 >3fe2_A Probable ATP-dependent 80.0 2.5 7.5E-05 22.5 4.1 99 53-159 73-183 (242) 92 >1p3d_A UDP-N-acetylmuramate-- 79.6 1.9 5.5E-05 23.4 3.3 38 45-86 3-40 (209) 93 >1e8c_A UDP-N-acetylmuramoylal 78.6 5 0.00015 20.4 5.9 44 36-83 10-53 (247) 94 >1xx6_A Thymidine kinase; X-RA 77.4 5.4 0.00016 20.2 5.6 27 55-81 17-43 (147) 95 >3lk7_A UDP-N-acetylmuramoylal 77.0 3.6 0.00011 21.4 4.1 34 44-81 1-34 (199) 96 >1p9r_A General secretion path 76.8 4.4 0.00013 20.8 4.5 26 55-80 30-55 (272) 97 >2oap_1 GSPE-2, type II secret 76.6 3.3 9.8E-05 21.7 3.8 29 55-84 9-37 (186) 98 >1eg7_A Formyltetrahydrofolate 76.6 4.3 0.00013 20.8 4.4 187 42-278 55-276 (308) 99 >2qy9_A Cell division protein 76.3 2.2 6.6E-05 22.9 2.9 30 54-83 15-44 (198) 100 >2eyq_A TRCF, transcription-re 76.0 5.8 0.00017 19.9 5.5 97 55-165 52-157 (202) 101 >2qgz_A Helicase loader, putat 75.9 2 6E-05 23.2 2.6 36 41-79 150-185 (308) 102 >2i3b_A HCR-ntpase, human canc 75.8 2.1 6.1E-05 23.1 2.6 29 55-83 10-38 (189) 103 >2pk3_A GDP-6-deoxy-D-LYXO-4-h 75.3 6.1 0.00018 19.8 6.1 43 52-96 16-58 (321) 104 >2f00_A UDP-N-acetylmuramate-- 75.3 2.9 8.7E-05 22.0 3.3 34 53-86 7-40 (209) 105 >2zr9_A Protein RECA, recombin 75.1 2.7 8.1E-05 22.2 3.1 27 55-81 36-62 (237) 106 >2pln_A HP1043, response regul 74.8 5.5 0.00016 20.1 4.6 48 115-162 43-96 (137) 107 >2jjm_A Glycosyl transferase, 74.7 1 3.1E-05 25.2 0.8 142 41-194 13-165 (216) 108 >2w0m_A SSO2452; RECA, SSPF, u 74.6 2.5 7.5E-05 22.5 2.8 34 46-82 26-59 (235) 109 >1l8q_A Chromosomal replicatio 74.6 2.9 8.6E-05 22.1 3.1 38 41-81 35-72 (166) 110 >3ice_A Transcription terminat 74.5 5.6 0.00017 20.0 4.6 97 50-157 37-143 (281) 111 >2r6a_A DNAB helicase, replica 74.5 3.8 0.00011 21.2 3.7 27 55-81 22-49 (264) 112 >2pt7_A CAG-ALFA; ATPase, prot 74.5 1.8 5.4E-05 23.5 2.1 34 44-81 34-67 (192) 113 >2wv9_A Flavivirin protease NS 73.7 2.9 8.6E-05 22.1 2.9 27 55-81 19-46 (243) 114 >2ffh_A Protein (FFH); SRP54, 73.4 3.2 9.6E-05 21.7 3.1 31 54-84 14-44 (190) 115 >1g5t_A COB(I)alamin adenosylt 73.3 6.7 0.0002 19.5 5.2 34 53-87 35-68 (196) 116 >2vhj_A Ntpase P4, P4; non- hy 72.6 4.6 0.00014 20.6 3.7 25 55-79 68-92 (267) 117 >1g8f_A Sulfate adenylyltransf 72.2 3.4 0.0001 21.6 3.0 56 55-126 13-74 (120) 118 >2qby_A CDC6 homolog 1, cell d 72.0 2 6E-05 23.2 1.8 28 46-76 48-75 (196) 119 >2yvu_A Probable adenylyl-sulf 71.8 2.7 8E-05 22.3 2.4 39 46-87 16-54 (186) 120 >2z0h_A DTMP kinase, thymidyla 71.6 4.5 0.00013 20.7 3.5 33 55-87 9-41 (197) 121 >1vm6_A DHPR, dihydrodipicolin 71.3 3.7 0.00011 21.3 3.0 33 53-87 17-49 (142) 122 >2v6i_A RNA helicase; membrane 71.3 4.6 0.00013 20.7 3.5 27 55-81 11-38 (225) 123 >1hqc_A RUVB; extended AAA-ATP 71.2 2.3 6.9E-05 22.7 2.0 29 42-73 37-65 (167) 124 >3b85_A Phosphate starvation-i 71.2 4.6 0.00014 20.6 3.5 26 55-80 31-56 (194) 125 >2zan_A Vacuolar protein sorti 71.2 5.6 0.00016 20.1 3.9 34 257-290 208-242 (300) 126 >1gm5_A RECG; helicase, replic 71.1 7.5 0.00022 19.1 7.0 27 55-81 52-78 (203) 127 >2qm8_A GTPase/ATPase; G prote 71.1 7.5 0.00022 19.1 8.4 137 43-197 54-206 (337) 128 >1g41_A Heat shock protein HSL 71.0 1.7 5.1E-05 23.7 1.2 40 42-87 49-94 (335) 129 >2fi1_A Hydrolase, haloacid de 70.6 4.6 0.00014 20.6 3.4 89 54-147 13-119 (124) 130 >1w36_B RECB, exodeoxyribonucl 70.6 1.9 5.5E-05 23.4 1.3 39 44-85 17-55 (243) 131 >2qby_B CDC6 homolog 3, cell d 70.5 2.3 6.8E-05 22.8 1.8 27 44-73 46-72 (196) 132 >1pfk_A Phosphofructokinase; t 70.4 5.1 0.00015 20.3 3.5 111 49-160 5-125 (185) 133 >2p65_A Hypothetical protein P 70.4 2.1 6.2E-05 23.1 1.6 29 44-75 44-72 (187) 134 >1gtv_A TMK, thymidylate kinas 70.0 1.7 4.9E-05 23.8 1.0 32 55-86 9-40 (214) 135 >3ld9_A DTMP kinase, thymidyla 70.0 2.9 8.6E-05 22.1 2.2 40 45-87 23-62 (223) 136 >1cqx_A Flavohemoprotein; glob 70.0 3.6 0.00011 21.4 2.7 33 44-80 7-39 (143) 137 >1fnn_A CDC6P, cell division c 69.6 4.2 0.00012 20.9 3.0 28 46-76 47-74 (192) 138 >2oca_A DAR protein, ATP-depen 68.8 7 0.00021 19.3 4.0 125 54-198 49-178 (202) 139 >3hdt_A Putative kinase; struc 68.4 0.81 2.4E-05 26.0 -0.9 37 43-82 13-50 (223) 140 >2chq_A Replication factor C s 68.3 1.7 4.9E-05 23.8 0.7 31 44-77 39-69 (160) 141 >1uj2_A Uridine-cytidine kinas 68.1 5.9 0.00017 19.9 3.5 35 47-81 23-62 (188) 142 >3bgw_A DNAB-like replicative 68.1 4.3 0.00013 20.8 2.8 27 55-81 23-49 (261) 143 >3bh0_A DNAB-like replicative 68.1 4.9 0.00014 20.5 3.0 28 55-82 28-55 (266) 144 >2gk6_A Regulator of nonsense 67.9 4.9 0.00014 20.4 3.0 28 56-83 60-87 (263) 145 >3h1t_A Type I site-specific r 67.9 5.2 0.00015 20.3 3.2 22 54-75 37-58 (192) 146 >2vbc_A Dengue 4 NS3 FULL-leng 67.9 4.7 0.00014 20.6 2.9 27 55-81 20-47 (229) 147 >2qxy_A Response regulator; re 67.8 3.2 9.6E-05 21.7 2.1 48 115-162 29-85 (142) 148 >2wjy_A Regulator of nonsense 67.7 4.9 0.00014 20.4 3.0 28 56-83 60-87 (263) 149 >1p5z_B DCK, deoxycytidine kin 67.5 0.37 1.1E-05 28.4 -2.8 43 45-90 25-68 (263) 150 >2ewv_A Twitching motility pro 67.5 8.1 0.00024 18.9 4.1 26 55-80 21-47 (248) 151 >2oyc_A PLP phosphatase, pyrid 67.4 8.9 0.00026 18.6 5.6 62 222-287 19-93 (140) 152 >1p6x_A Thymidine kinase; P-lo 67.1 2.1 6.4E-05 23.0 1.1 33 48-83 12-44 (334) 153 >1ye8_A Protein THEP1, hypothe 66.8 4.4 0.00013 20.8 2.6 94 54-148 8-113 (178) 154 >1yks_A Genome polyprotein [co 66.8 5.2 0.00015 20.3 3.0 27 55-81 17-44 (230) 155 >3cmu_A Protein RECA, recombin 66.1 5 0.00015 20.4 2.8 27 55-81 32-58 (233) 156 >2is6_A DNA helicase II; hydro 66.0 6 0.00018 19.8 3.2 35 44-81 23-61 (201) 157 >2j37_W Signal recognition par 65.9 6.1 0.00018 19.8 3.2 30 53-82 13-42 (190) 158 >1kjn_A MTH0777; hypotethical 65.9 5.6 0.00017 20.0 3.0 23 59-81 21-43 (157) 159 >1u0j_A DNA replication protei 65.8 4.5 0.00013 20.7 2.5 67 26-95 24-90 (204) 160 >3dhn_A NAD-dependent epimeras 65.8 5.9 0.00017 19.9 3.1 35 52-88 8-42 (227) 161 >1f0k_A MURG, UDP-N-acetylgluc 65.3 9.8 0.00029 18.3 4.3 33 55-87 15-47 (196) 162 >1rz3_A Hypothetical protein r 65.0 6.1 0.00018 19.7 3.1 40 44-86 22-62 (201) 163 >1jbk_A CLPB protein; beta bar 65.0 3 9E-05 21.9 1.5 30 42-74 42-71 (195) 164 >2pez_A Bifunctional 3'-phosph 64.2 5.9 0.00017 19.9 2.8 33 55-87 14-46 (179) 165 >1gg4_A UDP-N-acetylmuramoylal 64.1 4.1 0.00012 21.0 2.0 37 41-81 16-52 (231) 166 >3hws_A ATP-dependent CLP prot 64.0 2.9 8.5E-05 22.1 1.2 36 40-81 48-83 (255) 167 >2v1u_A Cell division control 63.5 3.8 0.00011 21.2 1.8 30 44-76 45-74 (200) 168 >2p67_A LAO/AO transport syste 63.5 11 0.00031 18.1 5.4 42 43-87 55-97 (265) 169 >2v54_A DTMP kinase, thymidyla 63.3 4 0.00012 21.0 1.9 35 46-83 7-41 (204) 170 >1oc2_A DTDP-glucose 4,6-dehyd 63.0 11 0.00032 18.0 5.3 32 52-85 8-39 (329) 171 >1nlf_A Regulatory protein REP 62.9 8.9 0.00026 18.6 3.6 26 55-80 17-42 (257) 172 >1vl0_A DTDP-4-dehydrorhamnose 62.8 11 0.00032 18.0 4.2 63 221-285 187-249 (292) 173 >2j28_9 Signal recognition par 62.8 3.2 9.4E-05 21.8 1.3 100 46-162 11-133 (239) 174 >1qvr_A CLPB protein; coiled c 62.6 4.4 0.00013 20.8 2.0 29 43-74 46-74 (186) 175 >3ec2_A DNA replication protei 62.5 3.7 0.00011 21.3 1.6 37 41-80 36-72 (180) 176 >1w5s_A ORC2; CDC6, DNA replic 62.5 4.1 0.00012 21.0 1.8 25 46-73 55-79 (214) 177 >1r6b_X CLPA protein; AAA+, N- 62.4 4.1 0.00012 21.0 1.8 29 44-75 52-80 (192) 178 >2orw_A Thymidine kinase; TMTK 62.4 11 0.00033 17.9 5.4 27 55-81 12-38 (142) 179 >2chg_A Replication factor C s 62.3 4.2 0.00013 20.9 1.8 31 44-77 39-69 (160) 180 >2w00_A HSDR, R.ECOR124I; ATP- 62.1 11 0.00033 17.9 6.4 28 54-81 35-64 (199) 181 >2pbr_A DTMP kinase, thymidyla 62.0 9 0.00027 18.6 3.5 30 55-84 9-38 (195) 182 >1of1_A Thymidine kinase; tran 62.0 3.8 0.00011 21.3 1.5 36 43-81 48-84 (376) 183 >2plr_A DTMP kinase, probable 61.9 5.9 0.00017 19.9 2.5 30 55-84 13-42 (213) 184 >1ofh_A ATP-dependent HSL prot 61.7 3.9 0.00011 21.2 1.6 31 40-73 47-77 (201) 185 >1gvn_B Zeta; postsegregationa 61.6 4.9 0.00015 20.4 2.1 25 46-73 36-60 (287) 186 >2v3c_C SRP54, signal recognit 61.4 7.1 0.00021 19.3 2.8 30 55-84 17-46 (188) 187 >1in4_A RUVB, holliday junctio 61.1 4 0.00012 21.0 1.6 37 41-83 49-85 (179) 188 >1nkt_A Preprotein translocase 61.0 9.1 0.00027 18.5 3.4 102 45-162 121-241 (311) 189 >2ggs_A 273AA long hypothetica 61.0 10 0.00031 18.1 3.6 33 52-86 4-36 (273) 190 >3c97_A Signal transduction hi 61.0 10 0.00031 18.1 3.7 27 115-141 35-61 (65) 191 >2jlq_A Serine protease subuni 61.0 7.7 0.00023 19.0 3.0 27 55-81 28-55 (237) 192 >1qvr_A CLPB protein; coiled c 61.0 12 0.00034 17.8 5.7 40 38-80 44-83 (218) 193 >1a5t_A Delta prime, HOLB; zin 61.0 4 0.00012 21.1 1.5 31 41-74 22-52 (166) 194 >1u94_A RECA protein, recombin 60.9 8.1 0.00024 18.9 3.1 27 55-81 36-62 (237) 195 >2gks_A Bifunctional SAT/APS k 60.9 7.4 0.00022 19.2 2.9 28 55-82 13-40 (178) 196 >2p6r_A Afuhel308 helicase; pr 60.8 2.3 6.8E-05 22.8 0.3 27 55-81 49-75 (202) 197 >3bs4_A Uncharacterized protei 60.4 6.9 0.0002 19.4 2.6 28 55-82 30-57 (260) 198 >1tf7_A KAIC; homohexamer, hex 60.3 8.4 0.00025 18.8 3.1 27 55-81 36-62 (271) 199 >3ehe_A UDP-glucose 4-epimeras 60.1 10 0.0003 18.2 3.5 33 52-86 5-37 (166) 200 >1vp8_A Hypothetical protein A 59.9 0.19 5.6E-06 30.5 -5.4 29 119-147 50-79 (201) 201 >2ccj_A DTMP kinase, thymidyla 59.8 7.3 0.00022 19.2 2.7 30 55-84 11-40 (205) 202 >1cr0_A DNA primase/helicase; 59.6 8.8 0.00026 18.6 3.1 30 55-84 21-51 (273) 203 >2dr3_A UPF0273 protein PH0284 59.6 8.8 0.00026 18.6 3.1 28 55-82 32-59 (247) 204 >1zxx_A 6-phosphofructokinase; 59.5 8.7 0.00026 18.7 3.0 111 49-160 4-124 (182) 205 >2c20_A UDP-glucose 4-epimeras 59.4 12 0.00036 17.6 4.6 34 52-87 5-38 (330) 206 >2pia_A Phthalate dioxygenase 59.4 6 0.00018 19.8 2.2 29 52-80 8-36 (121) 207 >1sxj_D Activator 1 41 kDa sub 59.4 4.5 0.00013 20.7 1.5 26 45-73 60-85 (191) 208 >2qz4_A Paraplegin; AAA+, SPG7 59.2 4.5 0.00013 20.7 1.5 32 44-81 40-71 (177) 209 >3ew7_A LMO0794 protein; Q8Y8U 59.2 12 0.00037 17.6 4.1 33 52-86 4-36 (221) 210 >1q57_A DNA primase/helicase; 59.0 5.1 0.00015 20.3 1.8 29 55-83 21-50 (273) 211 >1uaa_A REP helicase, protein 58.9 6.7 0.0002 19.5 2.4 28 54-81 23-54 (195) 212 >3cmw_A Protein RECA, recombin 58.9 8.1 0.00024 18.9 2.8 27 55-81 36-62 (237) 213 >1njg_A DNA polymerase III sub 58.9 4.6 0.00014 20.7 1.5 32 40-74 42-73 (185) 214 >3cmu_A Protein RECA, recombin 58.9 8.1 0.00024 18.9 2.8 27 55-81 36-62 (237) 215 >1orr_A CDP-tyvelose-2-epimera 58.8 13 0.00037 17.5 6.2 31 52-84 5-35 (347) 216 >1e9r_A Conjugal transfer prot 58.8 8.4 0.00025 18.8 2.8 27 55-81 39-65 (274) 217 >2v9p_A Replication protein E1 58.7 11 0.00032 18.0 3.4 32 39-73 46-77 (229) 218 >1rif_A DAR protein, DNA helic 58.5 7.6 0.00022 19.1 2.6 28 54-81 49-77 (195) 219 >1m8p_A Sulfate adenylyltransf 58.1 7.4 0.00022 19.2 2.5 31 54-84 13-43 (182) 220 >3tmk_A Thymidylate kinase; ph 58.1 6.7 0.0002 19.5 2.3 32 45-79 7-38 (216) 221 >3kx2_B PRE-mRNA-splicing fact 58.1 13 0.00038 17.4 4.0 12 232-243 144-155 (222) 222 >3pfk_A Phosphofructokinase; t 57.5 12 0.00035 17.7 3.4 111 49-160 4-124 (186) 223 >2b69_A UDP-glucuronate decarb 57.4 13 0.00039 17.4 4.1 31 53-85 32-62 (198) 224 >3h4m_A Proteasome-activating 57.3 5.6 0.00016 20.0 1.7 24 55-81 60-83 (187) 225 >1d2n_A N-ethylmaleimide-sensi 57.3 5.1 0.00015 20.3 1.6 29 42-73 63-91 (196) 226 >2bll_A Protein YFBG; decarbox 56.6 14 0.00041 17.3 4.2 33 52-86 4-36 (345) 227 >1iy2_A ATP-dependent metallop 56.6 4.6 0.00014 20.6 1.2 34 42-81 72-105 (210) 228 >3h2s_A Putative NADH-flavin r 56.5 14 0.00041 17.3 4.1 32 52-85 4-35 (224) 229 >3gpi_A NAD-dependent epimeras 56.5 14 0.00041 17.3 6.0 38 52-91 6-43 (286) 230 >2c9o_A RUVB-like 1; hexameric 56.5 14 0.00041 17.3 5.4 37 39-81 59-95 (365) 231 >3cr8_A Sulfate adenylyltranfe 56.3 5.8 0.00017 19.9 1.7 37 45-84 7-43 (188) 232 >2zxe_A Na, K-ATPase alpha sub 56.2 14 0.00041 17.2 4.2 27 55-81 22-48 (185) 233 >2q6t_A DNAB replication FORK 56.1 11 0.00032 18.0 3.1 28 55-82 31-59 (266) 234 >3d8b_A Fidgetin-like protein 56.0 4.5 0.00013 20.7 1.1 27 43-72 117-143 (268) 235 >3iru_A Phoshonoacetaldehyde h 55.9 14 0.00042 17.2 5.4 42 43-84 5-51 (172) 236 >2q1w_A Putative nucleotide su 55.7 14 0.00042 17.2 4.2 33 52-86 25-57 (333) 237 >1qgu_B Protein (nitrogenase m 55.7 13 0.00039 17.4 3.4 34 220-253 79-112 (240) 238 >2p5t_B PEZT; postsegregationa 55.5 6.1 0.00018 19.8 1.7 34 42-81 31-64 (253) 239 >3gi1_A LBP, laminin-binding p 55.5 14 0.00042 17.2 4.2 94 235-330 10-105 (109) 240 >1pjr_A PCRA; DNA repair, DNA 54.9 12 0.00035 17.7 3.1 28 54-81 32-63 (200) 241 >3dqp_A Oxidoreductase YLBE; a 54.8 15 0.00043 17.1 4.0 35 52-88 4-38 (219) 242 >2bka_A CC3, TAT-interacting p 54.6 13 0.0004 17.3 3.3 33 52-86 22-54 (242) 243 >2z83_A Helicase/nucleoside tr 54.4 11 0.00034 17.8 2.9 27 55-81 30-57 (240) 244 >1u2p_A Ptpase, low molecular 54.3 8.5 0.00025 18.7 2.3 40 42-86 5-47 (163) 245 >1um8_A ATP-dependent CLP prot 54.3 5.3 0.00016 20.2 1.2 37 39-81 68-104 (272) 246 >2gno_A DNA polymerase III, ga 54.1 5.8 0.00017 19.9 1.4 22 55-76 27-48 (140) 247 >1f6b_A SAR1; gtpases, N-termi 54.0 5.9 0.00018 19.9 1.4 27 38-67 20-46 (198) 248 >1x6v_B Bifunctional 3'-phosph 54.0 9.3 0.00027 18.5 2.4 38 46-86 55-92 (233) 249 >1hdo_A Biliverdin IX beta red 53.8 15 0.00045 17.0 4.1 33 52-86 7-39 (206) 250 >3eie_A Vacuolar protein sorti 53.6 6.1 0.00018 19.8 1.4 26 44-72 52-77 (204) 251 >1iqp_A RFCS; clamp loader, ex 53.5 6.9 0.0002 19.4 1.7 30 45-77 48-77 (168) 252 >2gn4_A FLAA1 protein, UDP-GLC 53.3 15 0.00045 16.9 3.6 32 52-85 25-56 (344) 253 >2c5a_A GDP-mannose-3', 5'-epi 53.3 14 0.00043 17.1 3.3 33 52-86 33-65 (379) 254 >2zpa_A Uncharacterized protei 53.2 5.4 0.00016 20.2 1.1 25 54-81 34-58 (153) 255 >3c1o_A Eugenol synthase; phen 53.0 16 0.00046 16.9 6.7 32 52-85 8-39 (321) 256 >1htw_A HI0065; nucleotide-bin 52.8 5.8 0.00017 19.9 1.2 34 45-84 35-68 (158) 257 >3cpe_A Terminase, DNA packagi 52.4 16 0.00047 16.8 3.4 27 55-81 42-70 (238) 258 >3i6i_A Putative leucoanthocya 52.3 16 0.00047 16.8 4.1 67 222-288 189-257 (346) 259 >2db3_A ATP-dependent RNA heli 52.1 12 0.00037 17.6 2.8 43 231-273 184-232 (271) 260 >3b9p_A CG5977-PA, isoform A; 51.9 6.1 0.00018 19.8 1.2 33 43-81 54-86 (188) 261 >2r2a_A Uncharacterized protei 51.9 4.6 0.00014 20.6 0.6 21 56-76 15-35 (199) 262 >3d3j_A Enhancer of mRNA-decap 51.6 16 0.00048 16.7 6.0 152 43-240 133-286 (306) 263 >1z7e_A Protein aRNA; rossmann 51.4 16 0.00049 16.7 4.2 32 52-85 17-48 (358) 264 >1q0u_A Bstdead; DEAD protein, 51.1 6.9 0.0002 19.4 1.4 93 55-159 50-157 (219) 265 >1wp9_A ATP-dependent RNA heli 51.0 17 0.00049 16.7 5.3 27 55-81 32-59 (196) 266 >1tf7_A KAIC; homohexamer, hex 51.0 13 0.00039 17.4 2.8 31 55-85 48-79 (254) 267 >1n2s_A DTDP-4-, DTDP-glucose 50.9 13 0.00037 17.5 2.7 33 52-86 4-36 (299) 268 >1ja1_A NADPH-cytochrome P450 50.8 12 0.00035 17.7 2.6 28 42-73 5-32 (159) 269 >2oil_A CATX-8, RAS-related pr 50.8 7.6 0.00023 19.1 1.6 26 40-68 22-47 (193) 270 >2ce7_A Cell division protein 50.7 7.5 0.00022 19.1 1.5 33 43-81 49-81 (185) 271 >1m1n_B Nitrogenase molybdenum 50.7 17 0.0005 16.6 3.6 70 61-141 66-137 (215) 272 >1e32_A P97; membrane fusion; 50.6 6.6 0.00019 19.5 1.2 34 42-81 40-73 (174) 273 >1ixz_A ATP-dependent metallop 50.5 6.7 0.0002 19.5 1.2 30 46-81 52-81 (185) 274 >2hqr_A Putative transcription 50.5 17 0.0005 16.6 4.7 48 115-162 25-78 (99) 275 >2p5y_A UDP-glucose 4-epimeras 50.4 17 0.0005 16.6 3.8 33 52-86 4-36 (311) 276 >1lv7_A FTSH; alpha/beta domai 50.2 7.7 0.00023 19.0 1.5 34 42-81 44-77 (181) 277 >1vzy_A 33 kDa chaperonin; cha 50.1 12 0.00035 17.7 2.5 40 234-273 14-53 (54) 278 >1mio_B Nitrogenase molybdenum 50.1 17 0.00051 16.6 4.0 82 61-158 13-98 (109) 279 >3ius_A Uncharacterized conser 50.1 17 0.00051 16.6 3.9 33 52-86 8-40 (286) 280 >3cg0_A Response regulator rec 50.1 7.9 0.00023 19.0 1.6 30 115-144 34-64 (91) 281 >1qyd_A Pinoresinol-lariciresi 50.1 15 0.00045 16.9 3.0 60 222-281 188-248 (313) 282 >3iuy_A Probable ATP-dependent 50.0 16 0.00049 16.7 3.2 101 54-160 65-175 (228) 283 >2qp9_X Vacuolar protein sorti 50.0 7.8 0.00023 19.0 1.5 35 41-81 82-116 (237) 284 >2vsf_A XPD, DNA repair helica 49.9 4.3 0.00013 20.9 0.2 30 55-84 13-43 (234) 285 >2qt1_A Nicotinamide riboside 49.7 12 0.00035 17.7 2.4 32 44-81 21-52 (207) 286 >1vq0_A 33 kDa chaperonin; TM1 49.5 18 0.00052 16.5 3.8 42 234-276 15-56 (58) 287 >1zak_A Adenylate kinase; ATP: 49.4 5.9 0.00017 19.9 0.8 39 44-85 6-44 (222) 288 >1iuk_A Hypothetical protein T 49.4 18 0.00052 16.5 4.5 89 53-148 18-109 (140) 289 >2dcl_A Hypothetical UPF0166 p 49.3 18 0.00052 16.5 5.2 84 59-165 24-116 (127) 290 >2qen_A Walker-type ATPase; un 49.3 5.5 0.00016 20.1 0.7 32 46-80 34-65 (202) 291 >2iw3_A Elongation factor 3A; 49.2 5.2 0.00015 20.3 0.5 96 49-147 37-152 (227) 292 >1xvl_A Mn transporter, MNTC p 49.2 18 0.00052 16.5 3.8 50 235-284 11-60 (90) 293 >1ep3_B Dihydroorotate dehydro 49.2 13 0.0004 17.3 2.6 38 43-88 7-44 (159) 294 >1e2k_A Thymidine kinase; tran 49.1 5.3 0.00016 20.2 0.5 38 46-86 6-44 (331) 295 >2i4i_A ATP-dependent RNA heli 49.1 4.1 0.00012 21.0 -0.0 49 95-143 108-160 (245) 296 >1gvh_A Flavohemoprotein; oxid 48.9 17 0.0005 16.6 3.1 34 44-81 7-40 (143) 297 >1ulu_A Enoyl-acyl carrier pro 48.9 18 0.00053 16.4 3.8 32 52-83 12-43 (261) 298 >1rpn_A GDP-mannose 4,6-dehydr 48.6 18 0.00053 16.4 4.2 33 52-86 18-50 (189) 299 >2qr3_A Two-component system r 48.5 10 0.00031 18.1 1.9 27 115-141 28-54 (140) 300 >2pl3_A Probable ATP-dependent 48.4 16 0.00046 16.9 2.8 99 54-160 46-155 (212) 301 >1ddg_A Sulfite reductase (NAD 48.3 15 0.00045 17.0 2.8 34 43-80 5-38 (152) 302 >2rc5_A Ferredoxin-NADP reduct 48.2 13 0.00038 17.4 2.4 26 44-73 10-35 (158) 303 >1eq2_A ADP-L-glycero-D-mannoh 48.2 18 0.00054 16.4 4.0 33 52-86 3-35 (310) 304 >2i1q_A DNA repair and recombi 48.0 4.9 0.00015 20.4 0.2 28 55-82 43-70 (258) 305 >2jaq_A Deoxyguanosine kinase; 48.0 3.8 0.00011 21.2 -0.3 28 55-82 9-36 (205) 306 >3a4m_A L-seryl-tRNA(SEC) kina 47.9 15 0.00044 17.0 2.7 29 54-82 12-40 (182) 307 >2jeo_A Uridine-cytidine kinas 47.6 15 0.00044 17.0 2.6 36 45-82 26-66 (181) 308 >3i0z_A Putative tagatose-6-ph 47.5 19 0.00055 16.3 3.4 32 55-86 63-96 (119) 309 >2rgx_A Adenylate kinase; tran 47.5 9.1 0.00027 18.5 1.5 18 55-72 9-26 (148) 310 >1ly1_A Polynucleotide kinase; 47.3 11 0.00031 18.1 1.9 24 55-82 11-34 (114) 311 >1aw2_A Triosephosphate isomer 47.1 4.8 0.00014 20.5 0.1 20 225-244 232-251 (256) 312 >1m7g_A Adenylylsulfate kinase 47.0 11 0.00033 17.9 1.9 30 55-84 34-63 (211) 313 >2r6j_A Eugenol synthase 1; ph 47.0 19 0.00056 16.2 3.3 69 222-290 182-252 (318) 314 >1e6u_A GDP-fucose synthetase; 46.6 19 0.00057 16.2 3.5 34 52-87 7-40 (321) 315 >3dkp_A Probable ATP-dependent 46.6 12 0.00036 17.6 2.1 96 54-160 74-183 (245) 316 >1rkb_A Protein AD-004, protei 46.5 9.6 0.00028 18.4 1.5 23 46-71 7-29 (173) 317 >1qf9_A UMP/CMP kinase, protei 46.5 7.7 0.00023 19.0 1.0 22 55-76 15-36 (194) 318 >3e48_A Putative nucleoside-di 46.5 19 0.00057 16.2 3.7 67 221-288 164-230 (289) 319 >2hun_A 336AA long hypothetica 46.3 20 0.00058 16.2 4.4 33 52-86 7-39 (336) 320 >1jr3_A DNA polymerase III sub 46.1 9.8 0.00029 18.3 1.5 33 38-73 33-65 (177) 321 >2gk4_A Conserved hypothetical 46.0 9.7 0.00029 18.3 1.5 33 45-82 19-51 (232) 322 >2dwc_A PH0318, 433AA long hyp 46.0 20 0.00058 16.1 3.2 61 226-286 22-92 (108) 323 >2z1m_A GDP-D-mannose dehydrat 45.8 20 0.00059 16.1 3.8 30 52-83 7-36 (178) 324 >3eme_A Rhodanese-like domain 45.6 13 0.00037 17.5 2.0 82 63-150 6-96 (103) 325 >1xwi_A SKD1 protein; VPS4B, A 45.6 14 0.0004 17.3 2.2 36 42-83 44-79 (178) 326 >2o0j_A Terminase, DNA packagi 45.4 20 0.00058 16.1 3.0 27 55-81 23-51 (221) 327 >1sxj_B Activator 1 37 kDa sub 45.4 10 0.0003 18.2 1.5 26 45-73 44-69 (166) 328 >2a9o_A Response regulator; es 45.2 20 0.0006 16.1 3.8 26 116-141 27-52 (120) 329 >2obl_A ESCN; ATPase, hydrolas 45.1 19 0.00057 16.2 2.9 30 50-80 75-104 (271) 330 >3eph_A TRNA isopentenyltransf 45.0 11 0.00031 18.1 1.6 129 46-198 5-148 (270) 331 >2g4r_A MOGA, molybdopterin bi 44.9 20 0.0006 16.0 5.0 36 43-78 5-40 (160) 332 >2o1e_A YCDH; alpha-beta prote 44.9 20 0.00061 16.0 3.3 51 234-284 8-58 (82) 333 >1moz_A ARL1, ADP-ribosylation 44.9 17 0.00051 16.6 2.6 33 34-73 9-41 (183) 334 >3hbm_A UDP-sugar hydrolase; P 44.8 17 0.0005 16.6 2.6 40 42-84 7-46 (134) 335 >2fna_A Conserved hypothetical 44.6 11 0.00032 18.0 1.5 34 43-82 30-63 (208) 336 >3ixz_A Potassium-transporting 44.5 21 0.00061 16.0 4.1 21 61-81 31-51 (187) 337 >2fg5_A RAB-22B, RAS-related p 44.4 15 0.00046 16.9 2.3 24 43-69 23-46 (192) 338 >3foj_A Uncharacterized protei 44.3 13 0.00039 17.4 2.0 82 63-150 6-96 (100) 339 >1yzq_A Small GTP binding prot 44.3 15 0.00044 17.0 2.2 24 42-68 5-28 (170) 340 >1xgk_A Nitrogen metabolite re 44.3 21 0.00062 16.0 4.1 33 52-86 9-41 (352) 341 >2p4h_X Vestitone reductase; N 44.2 21 0.00062 16.0 3.9 33 52-86 5-37 (322) 342 >3gk5_A Uncharacterized rhodan 44.1 14 0.0004 17.3 2.0 48 102-149 43-94 (108) 343 >3kbq_A Protein TA0487; struct 44.1 21 0.00062 16.0 4.4 35 44-78 6-40 (172) 344 >1p9o_A Phosphopantothenoylcys 44.1 9.4 0.00028 18.4 1.2 35 44-83 54-88 (313) 345 >2cvh_A DNA repair and recombi 43.6 8.3 0.00025 18.8 0.9 27 55-81 29-55 (220) 346 >3cm0_A Adenylate kinase; ATP- 43.6 11 0.00033 17.9 1.5 19 55-73 13-31 (186) 347 >1x1r_A RAS-related protein M- 43.6 13 0.00037 17.6 1.8 26 40-68 10-35 (178) 348 >1sxj_E Activator 1 40 kDa sub 43.5 21 0.00063 15.9 3.9 40 33-75 26-65 (192) 349 >2whl_A Beta-mannanase, baman5 43.2 22 0.00064 15.9 5.4 28 259-286 195-222 (258) 350 >3k1z_A Haloacid dehalogenase- 43.2 16 0.00047 16.8 2.2 26 60-85 24-49 (179) 351 >3enk_A UDP-glucose 4-epimeras 43.1 22 0.00064 15.8 3.8 31 52-84 9-39 (341) 352 >2pzm_A Putative nucleotide su 42.8 22 0.00065 15.8 4.3 32 53-86 25-56 (184) 353 >3bk7_A ABC transporter ATP-bi 42.7 9.1 0.00027 18.5 1.0 95 54-148 44-157 (226) 354 >2bdt_A BH3686; alpha-beta pro 42.5 9.8 0.00029 18.3 1.1 16 55-70 11-26 (189) 355 >2fn4_A P23, RAS-related prote 42.4 14 0.00042 17.2 1.9 28 39-69 5-32 (181) 356 >1ukz_A Uridylate kinase; tran 42.4 9.9 0.00029 18.3 1.1 25 46-73 17-42 (203) 357 >3dm5_A SRP54, signal recognit 42.4 22 0.00066 15.8 3.1 31 52-82 13-43 (192) 358 >1z45_A GAL10 bifunctional pro 42.4 22 0.00066 15.8 4.2 31 52-84 15-45 (354) 359 >1knq_A Gluconate kinase; ALFA 42.4 12 0.00036 17.7 1.5 19 55-73 17-35 (175) 360 >1rkx_A CDP-glucose-4,6-dehydr 42.3 22 0.00066 15.8 4.9 34 52-87 13-46 (357) 361 >2wm8_A MDP-1, magnesium-depen 42.2 22 0.00066 15.8 5.4 27 59-85 43-69 (161) 362 >1ak2_A Adenylate kinase isoen 42.2 12 0.00036 17.6 1.5 27 44-73 17-43 (185) 363 >2qzj_A Two-component response 42.1 22 0.00067 15.7 4.2 28 116-143 30-57 (136) 364 >3ch4_B Pmkase, phosphomevalon 42.0 8.8 0.00026 18.6 0.8 35 46-83 14-48 (202) 365 >1via_A Shikimate kinase; stru 42.0 12 0.00036 17.6 1.5 23 46-71 7-29 (175) 366 >2f9l_A RAB11B, member RAS onc 41.9 18 0.00054 16.4 2.4 31 44-77 6-36 (199) 367 >1tev_A UMP-CMP kinase; ploop, 41.8 13 0.00037 17.5 1.5 28 46-76 6-33 (196) 368 >2pt5_A Shikimate kinase, SK; 41.8 12 0.00037 17.6 1.5 17 55-71 9-25 (168) 369 >2dhr_A FTSH; AAA+ protein, he 41.8 11 0.00033 17.9 1.2 29 50-81 66-96 (200) 370 >1ltq_A Polynucleotide kinase; 41.7 11 0.00031 18.1 1.1 24 55-82 11-34 (114) 371 >3e8x_A Putative NAD-dependent 41.7 23 0.00068 15.7 4.1 31 52-84 25-55 (236) 372 >1sxj_C Activator 1 40 kDa sub 41.7 13 0.00038 17.5 1.6 25 46-73 49-73 (168) 373 >3ber_A Probable ATP-dependent 41.5 23 0.00068 15.7 3.7 94 55-160 89-194 (249) 374 >1z0f_A RAB14, member RAS onco 41.4 12 0.00037 17.6 1.5 25 41-68 13-37 (179) 375 >2efe_B Small GTP-binding prot 41.1 12 0.00035 17.8 1.3 25 41-68 10-34 (181) 376 >1qhx_A CPT, protein (chloramp 41.1 11 0.00034 17.8 1.2 27 46-75 6-32 (178) 377 >3c3m_A Response regulator rec 41.1 23 0.00069 15.6 4.1 25 117-141 30-54 (108) 378 >2a5j_A RAS-related protein RA 41.0 13 0.00039 17.4 1.5 25 41-68 19-43 (191) 379 >2c95_A Adenylate kinase 1; AP 40.8 13 0.00039 17.3 1.5 27 44-73 10-36 (196) 380 >1g8p_A Magnesium-chelatase 38 40.8 12 0.00037 17.6 1.4 27 43-72 45-71 (218) 381 >3cf0_A Transitional endoplasm 40.7 12 0.00035 17.8 1.2 32 44-81 50-81 (204) 382 >3cpj_B GTP-binding protein YP 40.6 13 0.00037 17.5 1.4 25 41-68 11-35 (223) 383 >2d7d_A Uvrabc system protein 40.6 17 0.00051 16.6 2.1 24 55-81 41-64 (311) 384 >1oyw_A RECQ helicase, ATP-dep 40.6 18 0.00054 16.4 2.2 92 55-163 49-150 (209) 385 >2zkl_A Capsular polysaccharid 40.4 24 0.0007 15.6 3.9 32 52-85 4-35 (130) 386 >2cdn_A Adenylate kinase; phos 40.4 14 0.0004 17.3 1.5 25 46-73 23-47 (201) 387 >2b0c_A Putative phosphatase; 40.4 24 0.00071 15.6 4.7 86 60-145 16-119 (129) 388 >2r62_A Cell division protease 40.3 14 0.00041 17.3 1.5 19 55-73 53-71 (184) 389 >2o2x_A Hypothetical protein; 40.3 24 0.00071 15.5 4.5 76 230-326 136-213 (218) 390 >1o51_A Hypothetical protein T 40.2 23 0.00068 15.7 2.7 28 59-86 28-55 (114) 391 >3bc1_A RAS-related protein RA 40.2 14 0.00041 17.2 1.6 25 41-68 9-33 (195) 392 >1kag_A SKI, shikimate kinase 40.0 12 0.00035 17.7 1.2 16 55-70 13-28 (173) 393 >1fzq_A ADP-ribosylation facto 39.9 22 0.00066 15.8 2.6 29 36-67 9-37 (181) 394 >3c3w_A Two component transcri 39.9 16 0.00047 16.8 1.8 44 118-161 31-84 (129) 395 >3h0k_A UPF0200 protein SSO104 39.8 15 0.00046 16.9 1.7 21 54-78 8-28 (178) 396 >1tue_A Replication protein E1 39.8 12 0.00035 17.7 1.1 32 39-73 54-85 (212) 397 >1kjq_A GART 2, phosphoribosyl 39.7 24 0.00072 15.5 3.5 20 61-80 21-40 (125) 398 >2go7_A Hydrolase, haloacid de 39.7 23 0.00067 15.7 2.6 100 54-163 11-116 (137) 399 >1n7h_A GDP-D-mannose-4,6-dehy 39.7 24 0.00072 15.5 5.8 33 52-86 32-64 (381) 400 >2erx_A GTP-binding protein DI 39.6 12 0.00037 17.6 1.2 22 44-68 4-25 (172) 401 >2qjw_A Uncharacterized protei 39.3 19 0.00058 16.2 2.2 84 55-143 14-105 (176) 402 >2bwj_A Adenylate kinase 5; ph 39.3 15 0.00043 17.1 1.5 25 45-72 14-38 (199) 403 >2atv_A RERG, RAS-like estroge 39.2 18 0.00053 16.4 2.0 26 40-68 25-50 (196) 404 >3dz8_A RAS-related protein RA 39.2 21 0.00062 16.0 2.3 35 40-77 20-54 (191) 405 >2a35_A Hypothetical protein P 39.2 25 0.00073 15.4 2.7 34 52-87 9-42 (215) 406 >2iyv_A Shikimate kinase, SK; 39.1 15 0.00043 17.1 1.5 23 46-71 5-27 (169) 407 >3ipo_A Putative thiosulfate s 38.9 16 0.00047 16.8 1.7 34 115-148 78-115 (118) 408 >2vli_A Antibiotic resistance 38.7 14 0.0004 17.3 1.3 26 46-74 8-33 (183) 409 >1fx0_A ATP synthase alpha cha 38.7 23 0.00069 15.6 2.5 99 50-157 73-184 (277) 410 >2r6h_A NADH:ubiquinone oxidor 38.6 25 0.00075 15.4 2.7 37 43-83 5-42 (139) 411 >3lnc_A Guanylate kinase, GMP 38.6 12 0.00037 17.6 1.1 34 43-80 26-59 (166) 412 >1e6c_A Shikimate kinase; phos 38.5 15 0.00045 16.9 1.5 18 55-72 11-28 (173) 413 >1u7z_A Coenzyme A biosynthesi 38.3 26 0.00076 15.3 3.8 38 45-87 24-61 (226) 414 >3fdi_A Uncharacterized protei 38.1 13 0.0004 17.3 1.2 36 45-82 7-42 (201) 415 >2jg6_A DNA-3-methyladenine gl 38.0 22 0.00066 15.8 2.3 19 59-77 17-35 (65) 416 >2zej_A Dardarin, leucine-rich 37.9 16 0.00047 16.8 1.6 21 44-67 3-23 (72) 417 >3fb4_A Adenylate kinase; psyc 37.9 16 0.00047 16.8 1.5 24 55-78 9-32 (169) 418 >2rhm_A Putative kinase; ZP_00 37.5 15 0.00044 17.0 1.4 27 54-80 13-39 (193) 419 >2bme_A RAB4A, RAS-related pro 37.3 16 0.00048 16.8 1.5 34 41-77 8-41 (186) 420 >3bbp_A RAB-6, RAS-related pro 37.0 18 0.00053 16.5 1.7 26 40-68 13-38 (211) 421 >1zbd_A Rabphilin-3A; G protei 37.0 13 0.00039 17.4 1.0 26 40-68 5-30 (203) 422 >1qfj_A Protein (flavin reduct 37.0 27 0.00079 15.2 3.2 36 42-81 5-40 (136) 423 >1yt8_A Thiosulfate sulfurtran 37.0 22 0.00064 15.9 2.1 36 115-150 83-122 (127) 424 >1wcw_A Uroporphyrinogen III s 36.9 15 0.00044 17.0 1.3 33 218-250 80-112 (114) 425 >2ew1_A RAS-related protein RA 36.9 16 0.00047 16.8 1.4 25 41-68 24-48 (201) 426 >2z43_A DNA repair and recombi 36.8 9.6 0.00028 18.4 0.3 27 55-81 28-54 (236) 427 >1oix_A RAS-related protein RA 36.8 17 0.00049 16.7 1.5 25 41-68 27-51 (191) 428 >1xq6_A Unknown protein; struc 36.8 27 0.0008 15.2 4.0 30 52-83 8-37 (253) 429 >2bi7_A UDP-galactopyranose mu 36.7 27 0.0008 15.2 4.0 23 61-83 13-35 (119) 430 >1qsg_A Enoyl-[acyl-carrier-pr 36.7 27 0.0008 15.2 3.7 32 52-83 13-44 (265) 431 >2wmy_A WZB, putative acid pho 36.6 16 0.00048 16.8 1.4 88 42-149 9-96 (150) 432 >1e4v_A Adenylate kinase; tran 36.6 17 0.0005 16.6 1.5 18 55-72 9-26 (214) 433 >2gjx_A Beta-hexosaminidase al 36.4 27 0.00081 15.1 5.2 30 130-159 197-227 (323) 434 >2fts_A Gephyrin; gephyrin, ne 36.3 27 0.00081 15.1 4.4 73 176-248 78-165 (174) 435 >3g7q_A Valine-pyruvate aminot 36.3 16 0.00048 16.7 1.4 24 55-78 32-56 (70) 436 >3hdg_A Uncharacterized protei 36.2 28 0.00081 15.1 3.9 26 116-141 33-58 (137) 437 >2r44_A Uncharacterized protei 36.1 8.8 0.00026 18.7 0.0 30 40-72 43-72 (226) 438 >1k66_A Phytochrome response r 36.0 26 0.00078 15.2 2.4 25 117-141 35-69 (149) 439 >1zuh_A Shikimate kinase; alph 35.8 18 0.00053 16.5 1.5 18 54-71 15-32 (168) 440 >1w7j_A Myosin VA; motor prote 35.8 22 0.00066 15.8 2.0 51 226-291 222-272 (306) 441 >1r6b_X CLPA protein; AAA+, N- 35.7 28 0.00083 15.1 3.9 25 46-73 52-76 (213) 442 >3ffh_A Histidinol-phosphate a 35.5 28 0.00083 15.0 5.9 121 56-179 7-164 (170) 443 >2hrz_A AGR_C_4963P, nucleosid 35.5 27 0.00079 15.2 2.4 31 52-84 18-48 (342) 444 >1r2q_A RAS-related protein RA 35.4 16 0.00048 16.7 1.3 23 43-68 6-28 (170) 445 >3kqn_A Serine protease/ntpase 35.3 28 0.00084 15.0 2.8 35 148-182 123-157 (242) 446 >1dbw_A Transcriptional regula 35.3 28 0.00084 15.0 4.5 26 116-141 29-54 (126) 447 >1krh_A Benzoate 1,2-dioxygena 35.1 29 0.00085 15.0 2.7 31 53-83 11-41 (133) 448 >1uz5_A MOEA protein, 402AA lo 35.1 29 0.00085 15.0 4.4 68 175-244 78-156 (168) 449 >1gwn_A RHO-related GTP-bindin 34.9 19 0.00056 16.3 1.6 25 41-68 26-50 (205) 450 >3if2_A Aminotransferase; YP_2 34.9 25 0.00075 15.4 2.2 28 49-77 35-63 (90) 451 >1qyc_A Phenylcoumaran benzyli 34.8 29 0.00085 15.0 3.8 33 52-86 8-40 (308) 452 >2zwm_A Transcriptional regula 34.8 29 0.00086 15.0 3.6 25 117-141 29-53 (130) 453 >1zd8_A GTP:AMP phosphotransfe 34.8 15 0.00045 16.9 1.1 24 46-72 10-33 (227) 454 >3gh5_A HEX1, beta-hexosaminid 34.8 29 0.00086 15.0 5.0 30 130-159 184-213 (313) 455 >1fnb_A Ferredoxin-NADP+ reduc 34.7 19 0.00055 16.3 1.5 27 43-73 7-33 (159) 456 >2bcg_Y Protein YP2, GTP-bindi 34.7 19 0.00056 16.3 1.5 25 41-68 6-30 (206) 457 >1v5w_A DMC1, meiotic recombin 34.7 12 0.00034 17.8 0.4 27 55-81 28-54 (240) 458 >2eix_A NADH-cytochrome B5 red 34.6 23 0.00069 15.6 2.0 21 53-73 12-32 (133) 459 >2c29_D Dihydroflavonol 4-redu 34.5 29 0.00086 14.9 3.9 33 52-86 9-41 (337) 460 >1tmy_A CHEY protein, TMY; che 34.5 17 0.00051 16.5 1.3 44 118-161 31-84 (120) 461 >2hi0_A Putative phosphoglycol 34.5 19 0.00055 16.3 1.5 26 60-85 24-49 (152) 462 >1tvc_A Methane monooxygenase 34.4 29 0.00087 14.9 4.4 34 44-81 5-38 (137) 463 >1ksh_A ARF-like protein 2; sm 34.4 17 0.00052 16.5 1.3 26 39-67 14-39 (186) 464 >1db3_A GDP-mannose 4,6-dehydr 34.4 29 0.00087 14.9 3.8 33 52-86 5-37 (190) 465 >1y63_A LMAJ004144AAA protein; 34.3 16 0.00047 16.8 1.1 24 46-72 13-36 (184) 466 >3fho_A ATP-dependent RNA heli 34.2 30 0.00087 14.9 3.1 20 229-248 238-257 (326) 467 >2gas_A Isoflavone reductase; 34.1 30 0.00088 14.9 3.0 33 52-86 6-38 (144) 468 >2iye_A Copper-transporting AT 34.1 30 0.00088 14.9 2.7 89 49-157 28-122 (164) 469 >2a9k_A RAS-related protein RA 34.0 21 0.00061 16.0 1.6 25 41-68 16-40 (187) 470 >1m7b_A RND3/RHOE small GTP-bi 34.0 20 0.0006 16.1 1.6 27 39-68 3-29 (184) 471 >3dxb_A Thioredoxin N-terminal 34.0 30 0.00088 14.9 4.3 34 42-75 2-35 (102) 472 >2gkg_A Response regulator hom 33.9 30 0.00088 14.9 4.0 29 116-144 31-59 (127) 473 >1sb8_A WBPP; epimerase, 4-epi 33.9 30 0.00088 14.9 4.6 33 52-86 31-63 (352) 474 >2cu2_A Putative mannose-1-pho 33.8 18 0.00053 16.5 1.3 39 42-87 24-62 (263) 475 >2qdx_A Ferredoxin reductase; 33.7 14 0.00042 17.2 0.7 34 44-81 8-41 (158) 476 >2bgi_A Ferredoxin-NADP(H) red 33.6 17 0.00051 16.5 1.2 35 43-81 8-42 (160) 477 >1y1p_A ARII, aldehyde reducta 33.5 30 0.0009 14.8 4.1 30 52-83 15-44 (342) 478 >1d1q_A Tyrosine phosphatase ( 33.5 30 0.0009 14.8 3.4 93 42-151 8-104 (161) 479 >3be4_A Adenylate kinase; mala 33.5 21 0.00061 16.0 1.5 22 46-70 8-29 (153) 480 >1lw7_A Transcriptional regula 33.3 14 0.0004 17.3 0.6 23 46-71 12-34 (204) 481 >1fdr_A Flavodoxin reductase; 33.1 22 0.00065 15.8 1.6 34 44-81 8-41 (149) 482 >1cu1_A Protein (protease/heli 33.1 31 0.00091 14.8 2.8 122 150-292 125-250 (283) 483 >3ek2_A Enoyl-(acyl-carrier-pr 33.0 31 0.00091 14.8 3.7 32 52-83 18-49 (271) 484 >2jk1_A HUPR, hydrogenase tran 33.0 22 0.00064 15.9 1.6 26 116-141 26-51 (139) 485 >2gf9_A RAS-related protein RA 33.0 21 0.00063 15.9 1.5 25 41-68 20-44 (189) 486 >2b6h_A ADP-ribosylation facto 32.8 18 0.00054 16.4 1.2 22 41-65 27-48 (192) 487 >1c1y_A RAS-related protein RA 32.8 24 0.0007 15.6 1.8 22 44-68 4-25 (167) 488 >1xhf_A DYE resistance, aerobi 32.8 31 0.00092 14.7 4.1 26 116-141 29-54 (123) 489 >1umk_A B5R, NADH-cytochrome B 32.6 22 0.00064 15.8 1.6 22 52-73 5-26 (129) 490 3cf2_A P97VCP IN COMPLEX WITH 32.5 15 0.00044 17.0 0.7 30 46-81 241-270 (806) 491 >2ged_A SR-beta, signal recogn 32.5 31 0.00093 14.7 3.5 28 38-68 43-70 (193) 492 >2v6g_A Progesterone 5-beta-re 32.4 28 0.00082 15.1 2.1 32 52-85 5-36 (364) 493 >2cnd_A NADH-dependent nitrate 32.3 23 0.00068 15.7 1.6 35 43-81 20-56 (154) 494 >3kcn_A Adenylate cyclase homo 32.3 25 0.00073 15.5 1.8 50 112-161 25-85 (151) 495 >2rex_B RHO-related GTP-bindin 32.2 26 0.00076 15.3 1.9 26 40-68 7-32 (197) 496 >2v1x_A ATP-dependent DNA heli 32.1 32 0.00094 14.7 6.2 60 220-284 30-91 (138) 497 >1ny5_A Transcriptional regula 32.1 32 0.00094 14.7 4.1 29 116-144 26-54 (139) 498 >3bor_A Human initiation facto 32.0 28 0.00084 15.0 2.1 40 120-159 135-180 (237) 499 >2z2i_A PTH, peptidyl-tRNA hyd 32.0 12 0.00036 17.6 0.2 25 161-187 98-122 (191) 500 >3jvi_A Protein tyrosine phosp 32.0 32 0.00094 14.7 3.0 48 39-91 2-52 (161) No 1 >>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} (A:) Probab=96.66 E-value=0.0057 Score=41.27 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=34.7 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 988998230007888748999999998524731598760457877 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338) .|||++.- .+|+|||-+...|+..|+++|++|+++.-..++.. T Consensus 4 ~~vi~i~G--~~GsGKTTll~~l~~~l~~~g~kV~vi~~D~~~~~ 46 (169) T 1xjc_A 4 XNVWQVVG--YKHSGKTTLXEKWVAAAVREGWRVGTVKHHGHGGE 46 (169) T ss_dssp CCEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---- T ss_pred CEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC T ss_conf 65999982--99998999999999999866995157525775654 No 2 >>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens} (A:1-262) Probab=96.25 E-value=0.0056 Score=41.37 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=77.7 Q ss_pred CCCCCCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE-CC--CCCHHHHCCHHHHHHHCC Q ss_conf 338898899-82300078887489999999985247315987604578777755871-45--678877042123322057 Q gi|254780401|r 40 LHAPIPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVD-LE--KHSAYDVGDEPLLLARRA 115 (338) Q Consensus 40 ~~~~~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~-~~--~~~~~~vGDEp~lla~~~ 115 (338) ..-+.||+. +|= -|+|||.++..|+..++.+|+++++++--.++-....-... .. ......++....++...+ T Consensus 70 ~~~~~~v~~l~G~---~GaGKTT~l~kla~~l~~~~~kv~vi~~D~~r~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (262) T 2www_A 70 GKPLAFRVGLSGP---PGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRG 146 (262) T ss_dssp TCCSCEEEEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---- T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHCCCHHCCCCHHHH T ss_conf 8887217863079---9888999999999999858972889855898753143361102117765302221035671555 Q ss_pred CCCC-CCCHHHHHHHHCCCCCCEEEECCC--C---CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH Q ss_conf 6346-520122566410245747997183--2---234412306999961843356655376136521002556651454 Q gi|254780401|r 116 VTIV-TSDRKIGVQMLLQEGVDIIIMDDG--F---HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI 189 (338) Q Consensus 116 pv~V-~~~R~~~~~~~~~~~~diiIlDDG--f---Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v 189 (338) .-.- ...=..++..+...+.|.++.+-. + .+.....+.-++++|+..+---. ++ ....++.+|.+ T Consensus 147 ~~~~~~~~~~d~i~~~~~~~~d~~~ie~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~-~~~~~~~ad~i 217 (262) T 2www_A 147 TLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQ--------GI-KRGIIEMADLV 217 (262) T ss_dssp -----CTTHHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC---------------------CCSCSEE T ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHCCCCHHHCCCCEEEEEECCCCCHHHH--------HH-HHHHHHHCEEE T ss_conf 4212103169999998645999689862210012311313663468884488622478--------88-77698646079 Q ss_pred HHCCCCHHH Q ss_conf 420441245 Q gi|254780401|r 190 LYVGNKKNV 198 (338) Q Consensus 190 i~~~~~~~~ 198 (338) |+||.+... T Consensus 218 iitK~D~~~ 226 (262) T 2www_A 218 AVTKSDGDL 226 (262) T ss_dssp EECCCSGGG T ss_pred EEECCCCCC T ss_conf 997655530 No 3 >>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* (A:99-285) Probab=96.03 E-value=0.024 Score=36.89 Aligned_cols=79 Identities=24% Similarity=0.228 Sum_probs=47.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCC Q ss_conf 8998230007888748999999998524-7315987604578777755871456788770421233-220--57634652 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTS 121 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~ 121 (338) +..+|+ +|+|||-++.-||.+++.+ |+++++++= |+..+.+ .|.+- .+. ..++.+.. T Consensus 10 i~l~G~---~GvGKTT~a~~LA~~~~~~~g~~v~li~~------------D~~~~~~----~~~l~~~~~~~~~~~~~~~ 70 (187) T 2px0_A 10 IVLFGS---TGAGKTTTLAKLAAISMLEKHKKIAFITT------------DTYRIAA----VEQLKTYAELLQAPLEVCY 70 (187) T ss_dssp EEEEES---TTSSHHHHHHHHHHHHHHTTCCCEEEEEC------------CCSSTTH----HHHHHHHHTTTTCCCCBCS T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHHCCCCCEEECC------------CCCCHHH----HHHHHHHHHHCCCCCHHHC T ss_conf 999736---66326669999999998742234412037------------7564779----9999999865122312221 Q ss_pred CHHHHHHHHC-CCCCCEEEECCC Q ss_conf 0122566410-245747997183 Q gi|254780401|r 122 DRKIGVQMLL-QEGVDIIIMDDG 143 (338) Q Consensus 122 ~R~~~~~~~~-~~~~diiIlDDG 143 (338) +-......+. ..+.|+||.|-. T Consensus 71 ~~~~~~~~~~~~~~~d~ViIDt~ 93 (187) T 2px0_A 71 TKEEFQQAKELFSEYDHVFVDTA 93 (187) T ss_dssp SHHHHHHHHHHGGGSSEEEEECC T ss_pred CHHHHHHHHHHHCCCEEEEEECC T ss_conf 44689999984054328998336 No 4 >>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} (A:) Probab=95.96 E-value=0.025 Score=36.69 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=33.1 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 388988998230007888748999999998524731598760457 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) +-+.|||.|.- -.|+|||-+...|+++|+++|++++++.---+ T Consensus 3 ~~~~~vi~i~G--~~GsGKTTll~~L~~~l~~~g~kv~~i~~d~~ 45 (174) T 1np6_A 3 KTMIPLLAFAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174) T ss_dssp --CCCEEEEEC--CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC T ss_pred CEEEEEEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 62610799992--59998999999999999977984889982588 No 5 >>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:1-303) Probab=95.67 E-value=0.013 Score=38.85 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=37.4 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 898899823000788874899999999852473159876045787 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) +.+||+|.|. -||+|||.++.-||..|.++|++|.++.--..+. T Consensus 6 ~~~vi~v~s~-KGGvGKTT~a~~LA~~la~~G~rVlliD~D~~~~ 49 (303) T 1ihu_A 6 NIPPYLFFTG-KGGVGKTSISCATAIRLAEQGKRVLLVSTDPASN 49 (303) T ss_dssp SCCSEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCC T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 9983899988-9705799999999999997899899996789998 No 6 >>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} (A:) Probab=95.56 E-value=0.014 Score=38.60 Aligned_cols=154 Identities=8% Similarity=-0.074 Sum_probs=77.7 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC Q ss_conf 38898899823000788874899999999852473159876045787777558714567887704212332205763465 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~ 120 (338) ..+.|+|+|. =-.|+|||-++..|+..+...+....+.-++.....................+.+.......+..... T Consensus 11 ~~~~~~i~i~--G~~gaGKTTl~~~Ll~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 88 (262) T 1yrb_A 11 GMASMIVVFV--GTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESY 88 (262) T ss_dssp TCCCEEEEEE--CSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHH T ss_pred CCCCCEEEEE--ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHEECCCCEEEEH T ss_conf 8889889999--38998399999999998700988999964777536787734137777641100244310368713002 Q ss_pred CCHHH------HHHHHCCCCCCEEEECCCC-------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH Q ss_conf 20122------5664102457479971832-------------2344123069999618433566553761365210025 Q gi|254780401|r 121 SDRKI------GVQMLLQEGVDIIIMDDGF-------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338) Q Consensus 121 ~~R~~------~~~~~~~~~~diiIlDDGf-------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338) ..... +.......+.|+++.|--= ....+..+.-|+++|+.++---....+.+..++-... T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~iid~pG~~~~~~~~~~~~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~~~~~~~ 168 (262) T 1yrb_A 89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262) T ss_dssp HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH T ss_conf 76888899999999863167642303543204578999988899887436559998436545672378889999999887 Q ss_pred HHHHHHHHHHCCCCH Q ss_conf 566514544204412 Q gi|254780401|r 182 QLSYVDAILYVGNKK 196 (338) Q Consensus 182 ~l~rad~vi~~~~~~ 196 (338) .++-++++++||.+. T Consensus 169 ~i~~~~iiviNK~D~ 183 (262) T 1yrb_A 169 RLGATTIPALNKVDL 183 (262) T ss_dssp HHTSCEEEEECCGGG T ss_pred HCCCCCEEEECCCCC T ss_conf 537980577616554 No 7 >>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} (A:) Probab=95.51 E-value=0.025 Score=36.77 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=49.3 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCC Q ss_conf 899823000788874899999999852473159876045787777558714567887704212332-20--576346520 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSD 122 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~ 122 (338) |..|| .-|.|||-++.-||.+|.++|++|++++= |+.. -.+=|.+.. ++ ..|+.+..+ T Consensus 107 i~~vG---ptGvGKTTTiaKlA~~~~~~g~kv~lit~------------Dt~R----~ga~eQL~~~a~~~~vp~~~~~~ 167 (306) T 1vma_A 107 IMVVG---VNGTGKTTSCGKLAKMFVDEGKSVVLAAA------------DTFR----AAAIEQLKIWGERVGATVISHSE 167 (306) T ss_dssp EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEE------------CTTC----HHHHHHHHHHHHHHTCEEECCST T ss_pred EEECC---CCCCCCCHHHHHHHHHHHHCCCEEEEEEC------------CCCC----CHHHHHHHHHHHHCCCCCCCCCC T ss_conf 87415---55667641699999999857984799833------------6533----10577888887514754215677 Q ss_pred HHH---HH----HHHCCCCCCEEEECCC Q ss_conf 122---56----6410245747997183 Q gi|254780401|r 123 RKI---GV----QMLLQEGVDIIIMDDG 143 (338) Q Consensus 123 R~~---~~----~~~~~~~~diiIlDDG 143 (338) ... ++ +.+...++|+|+.|=. T Consensus 168 ~~~~~~~~~~~i~~~~~~~~d~VlIDTa 195 (306) T 1vma_A 168 GADPAAVAFDAVAHALARNKDVVIIDTA 195 (306) T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEEEC T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECH T ss_conf 8668988899999999869997998541 No 8 >>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} (A:1-204) Probab=95.31 E-value=0.0053 Score=41.53 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=71.9 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-CCC Q ss_conf 8988998230007888748999999998524731598760457877775587145678877042123322057634-652 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-VTS 121 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-V~~ 121 (338) ++||+.|+-. -|+|||.+...|+++++ |.+++++.-..++..-..-... +.+.+-..+...+.-. ... T Consensus 3 k~~v~~v~Gf--lGsGKTTll~~l~~~~~--~~k~~vi~~d~~~~~~d~~l~~-------~~~~~~~~~~~g~~~~~~~~ 71 (204) T 1nij_A 3 PIAVTLLTGF--LGAGKTTLLRHILNEQH--GYKIAVIENEFGEVSVDDQLIG-------DRATQIKTLTNGCICCSRSN 71 (204) T ss_dssp CEEEEEEEES--SSSSCHHHHHHHHHSCC--CCCEEEECSSCCSCCEEEEEEC-------TTSCEEEEETTSCEEECTTS T ss_pred CCCEEEEEEC--CCCCHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHH-------CCCCEEEEECCCCEEECCCH T ss_conf 6578999718--78999999999983778--9968999778875200399983-------78952998628831411525 Q ss_pred CHHHHHHH------HCCCCCCEEEEC-CCC---------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC Q ss_conf 01225664------102457479971-832---------------23441230699996184335665537613652100 Q gi|254780401|r 122 DRKIGVQM------LLQEGVDIIIMD-DGF---------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338) Q Consensus 122 ~R~~~~~~------~~~~~~diiIlD-DGf---------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338) +-..+.+. +...++|.|+.| .|. .+.....+.-++++|+..+- ..+--.+.+++ T Consensus 72 ~~~~~l~~~~~~~~a~~~~~d~ilie~~G~~~~~~~~~~~l~~~~~~~~~~~~~vi~vvda~~~~--~~~~~~~~~~~-- 147 (204) T 1nij_A 72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD--EQMNQFTIAQS-- 147 (204) T ss_dssp CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH--HHHHHCHHHHH-- T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCEEEECHHHHHH--HHHHHHHHHHH-- T ss_conf 68999999999986167777669995167668699999986666424638865477831477788--86423255654-- Q ss_pred HHHHHHHHHHHHCCCCH Q ss_conf 25566514544204412 Q gi|254780401|r 180 SRQLSYVDAILYVGNKK 196 (338) Q Consensus 180 ~~~l~rad~vi~~~~~~ 196 (338) .+.-||.+|+|+.+. T Consensus 148 --q~~~ad~viitK~D~ 162 (204) T 1nij_A 148 --QVGYADRILLTKTDV 162 (204) T ss_dssp --HHHTCSEEEEECTTT T ss_pred --HHCCCCEEEECCCCC T ss_conf --303477466301101 No 9 >>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} (A:) Probab=95.28 E-value=0.02 Score=37.42 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.4 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 8899823000788874899999999852473159876045 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) .||+|.|. =||+|||-++.-||-.|.++|++++++-=-- T Consensus 3 kvI~v~s~-KGGvGKTT~a~nlA~~La~~g~kvlliD~D~ 41 (263) T 1hyq_A 3 RTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263) T ss_dssp EEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEECCC T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 59999899-9988599999999999996899899996889 No 10 >>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} (A:1-61,A:124-208) Probab=95.18 E-value=0.03 Score=36.21 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=29.5 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 899823000788874899999999852473159876 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ||.| .=.+|+|||-++..|+..|+++|.+|+++| T Consensus 24 vI~i--~G~~GsGKTT~~~~La~~l~~~G~~v~~~~ 57 (146) T 3c8u_A 24 LVAL--SGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (146) T ss_dssp EEEE--ECCTTSCTHHHHHHHHHHHHHTTCCEEEEE T ss_pred EEEE--ECCCCCCHHHHHHHHHHHHHHCCCCCEEEC T ss_conf 9998--898999899999999999602145540312 No 11 >>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* (A:) Probab=95.02 E-value=0.03 Score=36.16 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=35.7 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 4338898899823000788874899999999852473159876 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ...-+.+||.|.+. -||+|||-++..||..|.++|++++++- T Consensus 21 ~~~~~~kvI~v~s~-kGGvGKTtia~~LA~~la~~g~~vl~id 62 (251) T 3fgn_A 21 YFQSHMTILVVTGT-GTGVGKTVVCAALASAARQAGIDVAVCK 62 (251) T ss_dssp -CCSSCEEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEEEE T ss_pred HHHCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 35405986899869-9996199999999999996899499977 No 12 >>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP} (A:) Probab=94.98 E-value=0.027 Score=36.44 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=32.1 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8899823000788874899999999852473159876 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .||+|.|- =||.|||-++..||-.|..+|+++.++- T Consensus 1 ~II~v~n~-KGGVGKTT~a~nLA~~la~~G~~vl~id 36 (209) T 3cwq_A 1 XIITVASF-KGGVGKTTTAVHLSAYLALQGETLLIDG 36 (209) T ss_dssp CEEEEEES-STTSSHHHHHHHHHHHHHTTSCEEEEEE T ss_pred CEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 98999879-9971799999999999997899899968 No 13 >>1qzx_A SRP54, signal recognition 54 kDa protein; signal recognition particle, protein targeting, signaling protein; 4.00A {Sulfolobus solfataricus} (A:98-290) Probab=94.90 E-value=0.027 Score=36.48 Aligned_cols=82 Identities=23% Similarity=0.220 Sum_probs=48.7 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC-CHHHHHHHC------CC Q ss_conf 98899823000788874899999999852473159876045787777558714567887704-212332205------76 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG-DEPLLLARR------AV 116 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG-DEp~lla~~------~p 116 (338) .+||.+.- .+|+|||-++..|+.+|+++|+++++++---++ .| |+-+..... .+ T Consensus 7 ~~vi~itG--~~GsGKTT~~~~L~~~l~~~g~~v~~i~~D~~~-----------------~~~~~~l~~~~~~~~~~~~~ 67 (193) T 1qzx_A 7 PFIIMLVG--VQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR-----------------PAAYDQLLQLGNQIGVQVYG 67 (193) T ss_dssp SEEEEEEC--SSSSSTTTHHHHHHHHHHHTTCCEEEEECCTTS-----------------THHHHHHHHHHHHTTCEEEC T ss_pred CEEEEEEC--CCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC-----------------CCHHHHHHHHHCCCCEEEEC T ss_conf 85999975--778884204999999998659830477426557-----------------54788899997037714731 Q ss_pred CCCCCCHHHHHH----HHCCCCCCEEEECCCC Q ss_conf 346520122566----4102457479971832 Q gi|254780401|r 117 TIVTSDRKIGVQ----MLLQEGVDIIIMDDGF 144 (338) Q Consensus 117 v~V~~~R~~~~~----~~~~~~~diiIlDDGf 144 (338) ...+.++....+ .+.....|+++.|-.. T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~t~g 99 (193) T 1qzx_A 68 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAG 99 (193) T ss_dssp CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCC T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 55556778899999998751489889987777 No 14 >>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:1-44,A:95-171) Probab=94.80 E-value=0.025 Score=36.77 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=28.3 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 0078887489999999985247315987604 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) -..|+|||-++..|+++|+++|+++++++.- T Consensus 9 G~~G~GKTT~~~~l~~~l~~~g~~v~vi~~D 39 (121) T 2f1r_A 9 GTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (121) T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEEC- T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEECEE T ss_conf 8899539999999983418788689990664 No 15 >>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} (A:1-73,A:153-290) Probab=94.77 E-value=0.11 Score=32.26 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=28.6 Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHC---CCCEEEEE Q ss_conf 98230007888748999999998524---73159876 Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDK---NLKPGFLS 81 (338) Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~---g~~~~ils 81 (338) .||=.=.-|||||-++..|+++|+++ |++++++| T Consensus 33 vigi~G~QGsGKTT~~~~L~~~L~~~~~~~lkv~~~S 69 (211) T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 69 (211) T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9983789878899999999999997507887079953 No 16 >>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} (A:) Probab=94.76 E-value=0.023 Score=36.93 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=33.5 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 88988998230007888748999999998524731598760 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) -.-.||+|-|. -||+|||.++.-||..|.++|++++++.- T Consensus 34 ~~~~iI~v~s~-KGGvGKTTia~~lA~~LA~~g~~Vllid~ 73 (298) T 2oze_A 34 NEAIVILNNYF-KGGVGKSKLSTMFAYLTDKLNLKVLMIDK 73 (298) T ss_dssp CSCEEEEECCS-SSSSSHHHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCEEEEEECCC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 84499995889-88826999999999999976998389706 No 17 >>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} (A:118-328) Probab=94.69 E-value=0.05 Score=34.62 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=32.2 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCC Q ss_conf 38898899823000788874899999999-8524731598760457 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKA-VIDKNLKPGFLSRGYG 85 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~-l~~~g~~~~ilsRGYg 85 (338) +.+.-|+.+|. ||+|||-++..|+++ |++.|++|.++-==-+ T Consensus 19 ~~~~~ilv~G~---gGvGKTT~~~~La~~~l~~~g~~vl~vD~D~~ 61 (211) T 2npi_A 19 FEGPRVVIVGG---SQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ 61 (211) T ss_dssp SSCCCEEEEES---TTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 25988999899---98788999999999998506982399976789 No 18 >>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} (A:1-228) Probab=94.58 E-value=0.033 Score=35.88 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=37.3 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 4338898899823000788874899999999852473159876045 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) .-.-+..||.|.|. -||.|||-++..||..|.++|++|.++---. T Consensus 13 ~~~~~~kvi~v~s~-kGGvGKTT~a~~LA~~la~~G~~VlliD~D~ 57 (228) T 2ph1_A 13 RLGKIKSRIAVXSG-KGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (228) T ss_dssp HHTTCSCEEEEECS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCS T ss_pred HHCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 75078869999769-9988799999999999997799177518988 No 19 >>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} (F:92-284) Probab=94.57 E-value=0.042 Score=35.15 Aligned_cols=28 Identities=39% Similarity=0.455 Sum_probs=26.9 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 0788874899999999852473159876 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .||+|||-++..|+..|.++|+++++++ T Consensus 15 ~~GvGKTT~~~~La~~L~~~G~~v~vi~ 42 (193) T 1j8m_F 15 VQGTGKTTTAGKLAYFYKKKGFKVGLVG 42 (193) T ss_dssp SSCSSTTHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 6555621579999999996697641000 No 20 >>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* (A:) Probab=94.53 E-value=0.03 Score=36.20 Aligned_cols=43 Identities=23% Similarity=0.130 Sum_probs=35.2 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 89889982300078887489999999985247315987604578 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +..||+|.|- =||+|||-++.-||..|.++|+++.+++=-..+ T Consensus 14 ~~~vIav~s~-KGGVGKTT~a~nLA~~La~~g~kVlvid~D~~~ 56 (334) T 3iqw_A 14 RSLRWIFVGG-KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334) T ss_dssp TTCCEEEEEC-STTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 7866999969-997819999999999999689958999589998 No 21 >>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} (A:) Probab=94.47 E-value=0.034 Score=35.81 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=35.5 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 89889982300078887489999999985247315987604578 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +..||+|-|- =||+|||-++.-||..|.++|++|.++.-=+.. T Consensus 17 ~~~vI~v~s~-KGGVGKTTva~nLA~~LA~~G~rVlliD~D~~~ 59 (329) T 2woo_A 17 TSLKWIFVGG-KGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAH 59 (329) T ss_dssp TTCCEEEEEC-SSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTC T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 7826999979-997849999999999999689938999689998 No 22 >>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} (A:) Probab=94.40 E-value=0.034 Score=35.75 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=30.1 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 0788874899999999852473159876045787 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) -||+|||-++..||..|.++|++|.+|.=-..+. T Consensus 9 KGGvGKTT~a~~lA~~LA~~g~kVlliD~D~~~~ 42 (269) T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269) T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 9977699999999999997899689995889998 No 23 >>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:150-344,A:555-574) Probab=94.36 E-value=0.24 Score=29.71 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=25.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .|||||-++..|++.+.+.|+++.+++ T Consensus 64 pGTGKT~~~~al~~~~~~~~~~Vl~~A 90 (215) T 3e1s_A 64 PGTGKSTTTKAVADLAESLGLEVGLCA 90 (215) T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 531179999999999986697599414 No 24 >>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} (A:) Probab=94.29 E-value=0.034 Score=35.81 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=29.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) +|.|.+ +-||+|||-++..||..|.++|++|.++.-= T Consensus 3 ~I~v~s-~kGGvGKTTvs~~LA~~La~~g~kVl~id~D 39 (220) T 2qmo_A 3 XLFISA-TNTNAGKTTCARLLAQYCNACGVKTILLKPI 39 (220) T ss_dssp EEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEECCE T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 899987-9999749999999999999789969998861 No 25 >>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* (1:) Probab=94.28 E-value=0.038 Score=35.45 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=35.3 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 89889982300078887489999999985247315987604578 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +-.||+|.|- -||+|||-++..||..|.++|++|.++-=-..+ T Consensus 5 ~~kvI~v~s~-KGGvGKTTia~~LA~~la~~g~kVlliD~D~~~ 47 (257) T 1wcv_1 5 KVRRIALANQ-KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG 47 (257) T ss_dssp CCCEEEECCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 8769999879-998859999999999999789978999679999 No 26 >>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} (E:) Probab=94.27 E-value=0.035 Score=35.73 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=27.9 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 07888748999999998524731598760457 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) =||+|||-++.-||..|.++|+++.++-==.. T Consensus 10 KGGVGKTT~a~nLA~~la~~G~rvlliD~D~~ 41 (289) T 2afh_E 10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289) T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 99888999999999999988998899952899 No 27 >>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A* (A:) Probab=94.26 E-value=0.035 Score=35.70 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=32.9 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 8899823000788874899999999852473159876045787 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) .||.+++ -||+|||-++.-||..|.++|++|.+|.--..+. T Consensus 42 ~Ii~~s~--KGGvGKTT~a~~lA~~La~~g~kVllID~D~~~~ 82 (307) T 3end_A 42 KVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHD 82 (307) T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCC T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 3999989--9874799999999999998799289994379986 No 28 >>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} (A:) Probab=94.21 E-value=0.036 Score=35.62 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=30.7 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 88998230007888748999999998524731598760 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) .+|.|.+. =||+|||-++..||..|.++|++|.++-= T Consensus 2 kvI~v~s~-KGGvGKTtia~~La~~La~~G~~Vl~id~ 38 (224) T 1byi_A 2 KRYFVTGT-DTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224) T ss_dssp EEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEEECS T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 52999979-99953999999999999977994999884 No 29 >>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} (A:) Probab=94.20 E-value=0.057 Score=34.21 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=32.6 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 889982300078887489999999985247315987604 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) .||+|.|. -||.|||-++.-||..|.++|+++.++-=- T Consensus 3 kvI~v~s~-KGGvGKTT~a~nLA~~LA~~g~kvlliD~d 40 (237) T 1g3q_A 3 RIISIVSG-KGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237) T ss_dssp EEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECC T ss_pred CEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 58999899-999839999999999999779988999799 No 30 >>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:304-589) Probab=94.13 E-value=0.038 Score=35.40 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=35.1 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 8988998230007888748999999998524731598760457 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) .-.||+|.|- =||.|||-++..||..|.++|++|++|-==.. T Consensus 22 ~~~vI~v~s~-KGGVGKTT~a~~LA~~La~~g~rVllID~D~~ 63 (286) T 1ihu_A 22 NEHGLIMLMG-KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 63 (286) T ss_dssp TSCEEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 1858999948-99872699999999999968993799956898 No 31 >>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} (A:) Probab=94.05 E-value=0.074 Score=33.37 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=33.1 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9889982300078887489999999985247315987604 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) .+||+|.-. .|+|||-++..|++.|...|.+++++|+- T Consensus 5 p~iIgI~G~--sGSGKTTla~~L~~~L~~~~~~~~~i~~D 42 (290) T 1a7j_A 5 HPIISVTGS--SGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290) T ss_dssp SCEEEEESC--C---CCTHHHHHHHHHHHHTCCEEEEEGG T ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 979999899--87819999999999970569976998377 No 32 >>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} (A:139-373) Probab=94.03 E-value=0.037 Score=35.56 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=34.1 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 9889982300078887489999999985247315987604578 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) ..||+|.+. -||+|||-++..||..|.++|++|.++---..+ T Consensus 5 ~~vI~v~s~-KGGvGKTT~a~~LA~~la~~G~~VlliD~D~~~ 46 (235) T 3fkq_A 5 SSVVIFTSP-CGGVGTSTVAAACAIAHANXGKKVFYLNIEQCG 46 (235) T ss_dssp CEEEEEECS-STTSSHHHHHHHHHHHHHHHTCCEEEEECCTTC T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 989999899-998459999999999999589939999589999 No 33 >>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* (A:) Probab=93.89 E-value=0.026 Score=36.63 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=27.5 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 078887489999999985247315987604 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) -||+|||-++.-||..|.++|++|.++.== T Consensus 8 KGGvGKTT~a~~lA~~La~~g~kVlliD~D 37 (254) T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254) T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 882259999999999999789979999779 No 34 >>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:1-297) Probab=93.82 E-value=0.032 Score=35.98 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=31.3 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8899823000788874899999999852473159876 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -||+|.|. =||+|||-++.-||..|.+.|++++++- T Consensus 2 aiI~v~s~-KGGVGKTT~a~nLA~~LA~~g~~v~li~ 37 (297) T 3igf_A 2 ALILTFLG-KSGVARTKIAIAAAKLLASQGKRVLLAG 37 (297) T ss_dssp CEEEEEEC-SBHHHHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 79999988-9878299999999999997899599991 No 35 >>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls} (A:) Probab=93.53 E-value=0.073 Score=33.44 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=31.0 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEECC Q ss_conf 9889982300078887489999999985247-3159876045 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRGY 84 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRGY 84 (338) ..||+|.|. -||+|||.++.-||..|.++| +++.++---. T Consensus 4 ~kvI~v~s~-KGGvGKTT~a~~LA~~La~~g~~~vllid~d~ 44 (245) T 3ea0_A 4 KRVFGFVSA-KGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245) T ss_dssp CEEEEEEES-STTSSHHHHHHHHHHHHTTSTTCCEEEEECCT T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 879999899-99665999999999999985899899997989 No 36 >>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* (A:1-286) Probab=93.37 E-value=0.68 Score=26.52 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=71.1 Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCC---HHHHCCHHHHHHHC Q ss_conf 643388988998230007888748999999998524731598760457877775587145678---87704212332205 Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS---AYDVGDEPLLLARR 114 (338) Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~---~~~vGDEp~lla~~ 114 (338) .....+.|||.| +|=.|||.++.+|+..|++.|++++...-|..........+.....+ .....+|....... T Consensus 43 ~~~~~~~~vI~V----TGT~GKTTt~~li~~iL~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (286) T 1w78_A 43 GVLKPAPFVFTV----AGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGD 118 (286) T ss_dssp TCSSCSSEEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTT T ss_pred CCCCCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC T ss_conf 996425988999----8882289999999999998899889978986124344078754304468765567777776423 Q ss_pred CCCCCCCCHHH---HHHHHCCCCCCEEEECCCCCCC-----CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC Q ss_conf 76346520122---5664102457479971832234-----41230699996184335665537613652100 Q gi|254780401|r 115 AVTIVTSDRKI---GVQMLLQEGVDIIIMDDGFHSA-----DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338) Q Consensus 115 ~pv~V~~~R~~---~~~~~~~~~~diiIlDDGfQh~-----~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338) ......... +.......++|+.++.=+.++. .+.+|+-++. ..+.+++=-.|...|-+ T Consensus 119 --~~~~~~~~~~~~~~~~~~~~~~~~~v~E~~~~~~~~~~~~~~p~v~vit-----ni~~dHl~~~g~~~~~i 184 (286) T 1w78_A 119 --ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVT-----SIALDHTDWLGPDRESI 184 (286) T ss_dssp --CCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTSGGGGSCCSEEEEC-----CCCSCCHHHHCSSHHHH T ss_pred --CCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCEEEECCHHHHH-----CCCCHHHHHHHHHHHHH T ss_conf --4630477889999998750387566302210444324302202222210-----00100244445677766 No 37 >>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} (A:160-350) Probab=93.30 E-value=0.18 Score=30.64 Aligned_cols=46 Identities=33% Similarity=0.463 Sum_probs=36.8 Q ss_pred CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 46433889889982300078887489999999985247315987604 Q gi|254780401|r 37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 37 ~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) ++....++|+|.|-- |--|+|||-++..|.+.|+++|+++....-| T Consensus 3 ~~~~~~~~p~i~i~G-t~sg~GKTt~t~~L~~al~~rG~~v~~~k~G 48 (191) T 2g0t_A 3 GGIYRKKIKVVGVFG-TDCVVGKRTTAVQLWERALEKGIKAGFLATG 48 (191) T ss_dssp SGGGGCCSEEEEEEE-SSSSSSHHHHHHHHHHHHHHTTCCEEEEECS T ss_pred CCCCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 410037874899955-7745138999999999999779972599707 No 38 >>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A (A:103-398) Probab=92.98 E-value=0.073 Score=33.41 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=32.4 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCC Q ss_conf 98899823000788874899999999------8524731598760457 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKA------VIDKNLKPGFLSRGYG 85 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~------l~~~g~~~~ilsRGYg 85 (338) ..||+|.|. -||+|||-++.-||.. |..+|++|.+|-=-.. T Consensus 6 ~~vI~v~s~-KGGvGKTT~a~nlA~~~~~~~~l~~~G~rVl~ID~D~q 52 (296) T 3ez2_A 6 AYVIFISNL-KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 52 (296) T ss_dssp CEEEEECCS-SSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT T ss_pred CEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 759999668-99875899999999999961055525984799679874 No 39 >>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A (A:106-403) Probab=92.83 E-value=0.11 Score=32.20 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=35.7 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHH------HCCCCEEEEEECCCCCC Q ss_conf 889889982300078887489999999985------24731598760457877 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVI------DKNLKPGFLSRGYGRKS 88 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~------~~g~~~~ilsRGYg~~~ 88 (338) -+..||+|-|. =||+|||-++.-||-+|. ++|++|.++---.-+.. T Consensus 4 ~~~kvI~v~~~-KGGvGKTT~a~nlA~~la~~~~l~~~g~~VlviD~D~q~~~ 55 (298) T 3ez9_A 4 KSPYVIFVVNL-KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASS 55 (298) T ss_dssp CSCEEEEECCC---------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGG T ss_pred CCCEEEEEECC-CCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCH T ss_conf 99759999781-78107899999999999842056658997899979987665 No 40 >>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} (A:) Probab=92.82 E-value=0.16 Score=31.08 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=34.3 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 388988998230007888748999999998524731598760 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) .-+..||.|-+. -||.|||-++.-||..|.++|.++.++-= T Consensus 101 ~~~~~vI~v~s~-kgGvGKTtia~~LA~~La~~g~~vlliD~ 141 (299) T 3cio_A 101 ETENNILMITGA-TPDSGKTFVSSTLAAVIAQSDQKVLFIDA 141 (299) T ss_dssp SCSCCEEEEEES-SSSSCHHHHHHHHHHHHHHTTCCEEEEEC T ss_pred CCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 999839999899-97998899999999999977995899845 No 41 >>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A* (A:) Probab=92.45 E-value=0.11 Score=32.25 Aligned_cols=43 Identities=23% Similarity=0.178 Sum_probs=33.5 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHH--HHHCCCCEEEEEECCCC Q ss_conf 898899823000788874899999999--85247315987604578 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKA--VIDKNLKPGFLSRGYGR 86 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~--l~~~g~~~~ilsRGYg~ 86 (338) +-.+|+|-|- =||+|||-++.-||.. |.++|++|.++.=-+.. T Consensus 16 ~~~iIav~s~-KGGVGKTT~a~nLA~a~~lA~~G~rVLviD~D~q~ 60 (354) T 2woj_A 16 TTHKWIFVGG-KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAH 60 (354) T ss_dssp SSCCEEEEEE-STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 9857999979-99760999999999999986589908999269999 No 42 >>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} (A:1-231) Probab=92.35 E-value=0.049 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.4 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |+.|| .-|+|||-++..|+++|+++|+++.+++-+ T Consensus 42 I~~vG---lpGsGKTT~a~~la~~l~~~g~~~~~i~~D 76 (231) T 1bif_A 42 IVMVG---LPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (231) T ss_dssp EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHH T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHCCCCCEEEECCH T ss_conf 99989---999998999999999973279873881507 No 43 >>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* (A:27-244) Probab=92.31 E-value=0.046 Score=34.86 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=31.6 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 98899823000788874899999999852473159876045 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) .-||.+| .-|+|||-++..|++++..+|.++.++|-+- T Consensus 10 ~viil~G---lpGsGKST~A~~L~~~~~~~~~~~~~~~~D~ 47 (218) T 2axn_A 10 TVIVMVG---LPARGKTYISKKLTRYLNWIGVPTKVFNVGE 47 (218) T ss_dssp EEEEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH T ss_pred EEEEEEC---CCCCCHHHHHHHHHHHHHCCCCCEEEECCHH T ss_conf 4999989---9999889999999999722798816823448 No 44 >>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167) Probab=92.29 E-value=0.37 Score=28.41 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=27.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) ++-+|-. |+|||...+.++..+...|+++.++.-. T Consensus 31 ~~i~G~m---gsGKTt~L~~~~~~~~~~~~kv~ii~p~ 65 (167) T 2j9r_A 31 EVICGSM---FSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (167) T ss_dssp EEEECST---TSCHHHHHHHHHHHHHHTTCCEEEEECC T ss_pred EEEEECC---CCHHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 9999050---7889999999999999879909998041 No 45 >>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} (A:) Probab=91.69 E-value=0.15 Score=31.25 Aligned_cols=43 Identities=26% Similarity=0.175 Sum_probs=33.3 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHH--HHHHCCCCEEEEEECCCC Q ss_conf 89889982300078887489999999--985247315987604578 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAK--AVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~--~l~~~g~~~~ilsRGYg~ 86 (338) +..||+|-|- =||+|||-++.-||- .|.+.|+++.+++-=..+ T Consensus 16 ~~~vI~v~s~-KGGVGKTT~a~nLA~a~~La~~G~rVLlvd~Dpq~ 60 (348) T 3io3_A 16 DSLKWIFVGG-KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH 60 (348) T ss_dssp TTCSEEEEEC-STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 8846999969-99562999999999999998589908999579998 No 46 >>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A (A:97-299) Probab=91.55 E-value=0.16 Score=30.93 Aligned_cols=32 Identities=22% Similarity=0.123 Sum_probs=28.2 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 23000788874899999999852473159876 Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) |=.=.||+|||-++..|++.|...|.++++++ T Consensus 13 ~i~G~~G~GKTTla~kl~~~l~~~g~~~~~i~ 44 (203) T 1zu4_A 13 MLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 44 (203) T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE T ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 95053013530378899999998099622675 No 47 >>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A (A:) Probab=91.52 E-value=0.24 Score=29.81 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=34.1 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 433889889982300078887489999999985247315987604 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) +...+..||.|-|. -||+|||-++.-||..|.++|..+.+.--- T Consensus 22 ~~~~~~~vIav~s~-KGGvGKTTia~~LA~~la~~g~~~lvd~D~ 65 (267) T 3k9g_A 22 MDNKKPKIITIASI-KGGVGKSTSAIILATLLSKNNKVLLIDMDT 65 (267) T ss_dssp ----CCEEEEECCS-SSSSCHHHHHHHHHHHHTTTSCEEEEEECT T ss_pred CCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 67889979999789-998669999999999998699889993676 No 48 >>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} (A:1-155) Probab=90.88 E-value=0.58 Score=27.04 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=24.8 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88874899999999852473159876 Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) |+|||-+...++..+...|.++..++ T Consensus 22 GsGKTtl~lq~a~~~~~~g~~v~~~~ 47 (155) T 2b8t_A 22 FAGKTAELIRRLHRLEYADVKYLVFK 47 (155) T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 77889999999999998799499998 No 49 >>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:) Probab=90.68 E-value=0.2 Score=30.24 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=34.5 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 3388988998230007888748999999998524731598760 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) ...+-.||.|-+. -||.|||-++..||..|.++|++|.++-= T Consensus 78 ~~~~~~vi~v~s~-kgG~GKTtia~nLA~~la~~g~~VlliD~ 119 (271) T 3bfv_A 78 PDSAVQSIVITSE-APGAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271) T ss_dssp TTCCCCEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEEC T ss_pred CCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 7999859999789-98998899999999999967994899855 No 50 >>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175) Probab=90.40 E-value=0.67 Score=26.60 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=27.9 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 898899823000788874899999999852473159876 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) +-.++..|-- |||||-++.++|+.+...+..+..+. T Consensus 52 ~~~ill~Gpp---GtGKT~la~aia~~l~~~~~~~~~~~ 87 (175) T 3bos_A 52 VQAIYLWGPV---KSGRTHLIHAACARANELERRSFYIP 87 (175) T ss_dssp CSEEEEECST---TSSHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHHHHCCHHEEHHH T ss_conf 8749998998---66688999999998532120001027 No 51 >>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:114-308) Probab=89.68 E-value=0.76 Score=26.20 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=40.4 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCEEEECCCCCHHHHCCHHHHHHHCCC Q ss_conf 88998230007888748999999998524731598760457877-7755871456788770421233220576 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS-RISFRVDLEKHSAYDVGDEPLLLARRAV 116 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~-~~~~~v~~~~~~~~~vGDEp~lla~~~p 116 (338) |||+| .|--|||-++.+++..|++.|+++.... +++... ...........-..|+|+-..+.....| T Consensus 2 ~vi~V----tGT~GKTtt~~ll~~iL~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~v~e~~~~~~~~~~~~p 69 (195) T 1j6u_A 2 EEFAV----TGTDGKTTTTAXVAHVLKHLRKSPTVFL-GGIXDSLEHGNYEKGNGPVVYELDESEEFFSEFSP 69 (195) T ss_dssp CEEEE----ECSSSHHHHHHHHHHHHHHTTCCCEEEC-SSCCTTSTTSSEECCSSCEEEEECTTSGGGGGCCC T ss_pred CEEEE----ECCCCCHHHHHHHHHHHCCCCCCCEEEC-CCCCCCCHHHHHCCCCCEEEEEECCCCCCCEEECC T ss_conf 57999----7888715399999998603587541214-77566420234316996089982045453202268 No 52 >>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} (A:106-326) Probab=89.64 E-value=0.51 Score=27.40 Aligned_cols=43 Identities=35% Similarity=0.346 Sum_probs=34.7 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 89889982300078887489999999985247315987604578777 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR 89 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~ 89 (338) +.|||+| +|=-|||-++.+|+..|++.|++++..+-|...... T Consensus 2 ~~~vI~V----tGT~GKttt~~ll~~iL~~~G~~~~~~~s~~~~~~~ 44 (221) T 3eag_A 2 HHWVLGV----AGTHGKTTTASXLAWVLEYAGLAPGFLIGGVPENFG 44 (221) T ss_dssp GSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSS T ss_pred CCCCEEE----EEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 5742256----542041368999999999709975323222235555 No 53 >>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} (A:96-293) Probab=89.34 E-value=0.3 Score=29.01 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=27.6 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 0078887489999999985247315987604 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) =-||+|||-++..|+..|...|.++.+..-- T Consensus 14 G~nG~GKTTl~~~La~~l~~~gg~v~i~~~D 44 (198) T 1rj9_A 14 GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 44 (198) T ss_dssp CSTTSSHHHHHHHHHHHHHTTTCCEEEECCC T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECC T ss_conf 4667774118999999986511540034214 No 54 >>2get_A Pantothenate kinase; homodimer, COA biosynthesis, nucleotide binding, transferase; HET: CME COK; 2.35A {Mycobacterium tuberculosis H37RV} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* (A:1-131,A:196-312) Probab=88.81 E-value=0.37 Score=28.40 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.7 Q ss_pred EECCCCCCHHHHHHHHHHHH--CCCCEEEEE Q ss_conf 00788874899999999852--473159876 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVID--KNLKPGFLS 81 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~--~g~~~~ils 81 (338) =+-|.|||-++.-||.+|+. +|++|++++ T Consensus 97 GptGVGKTTTiaKLA~~l~~~~~g~kV~Lit 127 (248) T 2get_A 97 GSVAVGKSTTARVLQALLARWDHHPRVDLVT 127 (248) T ss_dssp ECTTSSHHHHHHHHHHHHHCSTTCCCEEEEE T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 7988873899999999985207999659996 No 55 >>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} (A:1-304) Probab=88.20 E-value=2.1 Score=23.13 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=63.5 Q ss_pred HHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHH------CCHH Q ss_conf 4046433889889982300078887489999999985247315987604578777755871456788770------4212 Q gi|254780401|r 35 KRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDV------GDEP 108 (338) Q Consensus 35 ~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~v------GDEp 108 (338) .+......+.|||+| +|=-|||.++-+|+..|++.|++++...-|.-........+.....+.... -++. T Consensus 43 ~~l~~~~~~~~vI~V----tGTnGKTTTt~ll~~iL~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (304) T 1o5z_A 43 SKLGNPHLEYKTIHI----GGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPI 118 (304) T ss_dssp HHTTCGGGSSEEEEE----ECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHH T ss_pred HHCCCCHHHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHH T ss_conf 981990760988999----7982479999999999998799879978886074202899999934778889988877776 Q ss_pred HHHHH-CC--CCCCCCCHHHHH-HHHCCCCCCEEEECCCCC---C--CCCCCEEEEEE Q ss_conf 33220-57--634652012256-641024574799718322---3--44123069999 Q gi|254780401|r 109 LLLAR-RA--VTIVTSDRKIGV-QMLLQEGVDIIIMDDGFH---S--ADLQADFSLIV 157 (338) Q Consensus 109 ~lla~-~~--pv~V~~~R~~~~-~~~~~~~~diiIlDDGfQ---h--~~l~rdl~Ivl 157 (338) ..... .. +.....--...+ ......+.|+.+++-+-. + ..+++|.-+++ T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~E~~~~~~~~~~~~~~p~v~vit 176 (304) T 1o5z_A 119 LNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFPLCSTIV 176 (304) T ss_dssp HHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGGCCCSCEEEC T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEEC T ss_conf 6654115778898999999999999765148788654245421024440333342012 No 56 >>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* (C:115-314) Probab=88.10 E-value=0.46 Score=27.76 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=26.7 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 07888748999999998524731598760 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) -.|+|||-+...|+++++..|.++++++- T Consensus 23 p~GaGKTTli~~L~~~l~~~~g~v~i~~~ 51 (200) T 3e70_C 23 FNGSGKTTTIAKLANWLKNHGFSVVIAAS 51 (200) T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEC T ss_conf 87787543089999999966986236523 No 57 >>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} (A:120-374) Probab=87.06 E-value=0.71 Score=26.40 Aligned_cols=39 Identities=33% Similarity=0.402 Sum_probs=33.4 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 8988998230007888748999999998524731598760457 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) ++|||+| +|=-|||-++.+|+..|++.|++++..+-+.- T Consensus 2 ~~~vI~V----tGT~GKtst~~~i~~iL~~~G~~~~~~~s~~~ 40 (255) T 3hn7_A 2 SRHVIAV----AGTHGKTTTTTXLAWILHYAGIDAGFLIGGVP 40 (255) T ss_dssp GSEEEEE----ECSSCHHHHHHHHHHHHHHTTCCCEEECSCCB T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 7848999----55888555999999999974998639975702 No 58 >>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} (A:93-277) Probab=87.04 E-value=0.54 Score=27.25 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=29.1 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |+.+|- -|+|||-++--++.++..+|.+++|++.- T Consensus 9 v~i~G~---~GsGKTT~i~kl~~~~~~~~~~v~ii~~d 43 (185) T 1ls1_A 9 WFLVGL---QGSGKTTTAAKLALYYKGKGRRPLLVAAD 43 (185) T ss_dssp EEEECC---TTTTHHHHHHHHHHHHHHTTCCEEEEECC T ss_pred EEEECC---CCCCCHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 999678---88871227999999998669867888424 No 59 >>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:1-262) Probab=86.25 E-value=0.47 Score=27.69 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=19.2 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCC Q ss_conf 8988998230007888748999999998524731 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338) +..++-.|.- |||||=++.++++.+...+.. T Consensus 130 ~~~~ll~Gpp---GtGKT~La~aia~~~~~~~~~ 160 (262) T 2z4s_A 130 YNPLFIYGGV---GLGKTHLLQSIGNYVVQNEPD 160 (262) T ss_dssp SCCEEEECSS---SSSHHHHHHHHHHHHHHHCCS T ss_pred CCCEEEECCC---CCCHHHHHHHHHHHHHHCCCC T ss_conf 7856997687---756159999999999851984 No 60 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:361-593,A:665-705) Probab=86.14 E-value=0.58 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=25.0 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++.++......|.+++.++ T Consensus 32 pGsGKTtL~Lql~~~~~~~g~~vlyId 58 (274) T 3cmw_A 32 ESSGKTTLTLQVIAAAQREGKTCAFID 58 (274) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 877810247998888886588489942 No 61 >>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide- binding, transferase; HET: MSE; 2.01A {Staphylococcus aureus} (A:1-167) Probab=86.11 E-value=1.8 Score=23.48 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=41.1 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC--CCCCCCCHHHHHHHHCC Q ss_conf 7888748999999998524731598760457877775587145678877042123322057--63465201225664102 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA--VTIVTSDRKIGVQMLLQ 132 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~--pv~V~~~R~~~~~~~~~ 132 (338) =|+|||-..+-.++.+...|.++.++.-+.--+......+ .+.. -....-+....+..... T Consensus 37 m~sGKTt~Ll~~~~~~~~~g~kvivikp~~D~R~~~~~i~-----------------s~~g~~~~~~~i~~~~~i~~~~~ 99 (167) T 3e2i_A 37 XFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVV-----------------SHNGNAIEAINISKASEIXTHDL 99 (167) T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------------------CBTTBCCEEEEESSGGGGGGSCC T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEE-----------------CCCCCCCEEEECCCHHHHHHHHC T ss_conf 0773899999999999988996999925455507999777-----------------36898106576187789998643 Q ss_pred CCCCEEEECCC Q ss_conf 45747997183 Q gi|254780401|r 133 EGVDIIIMDDG 143 (338) Q Consensus 133 ~~~diiIlDDG 143 (338) ..+|+|+.|++ T Consensus 100 ~~~dvI~IDEa 110 (167) T 3e2i_A 100 TNVDVIGIDEV 110 (167) T ss_dssp TTCSEEEECCG T ss_pred CCCCEEEEECH T ss_conf 47999999814 No 62 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1056-1292,A:1363-1404) Probab=85.84 E-value=0.61 Score=26.88 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|||||-+++.++...+..|.+++.++ T Consensus 36 pgsGKTtlal~~~~~~~~~g~~vlyID 62 (279) T 3cmw_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (279) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 877804599999999986288479941 No 63 >>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} (A:) Probab=85.28 E-value=0.62 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=28.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 78887489999999985247315987604578 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) -|+|||-++..|++.|...|..+..++++... T Consensus 10 ~GsGKTT~a~~L~~~l~~~~~~~~~~~~~~~~ 41 (194) T 1nks_A 10 PGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194) T ss_dssp TTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH T ss_conf 99698999999999998769987999789831 No 64 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1-244,A:316-360) Probab=84.90 E-value=0.76 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++-++...+..|.+++.++ T Consensus 43 pGsGKTtL~Lq~~~~~~~~g~~viyid 69 (289) T 3cmw_A 43 ESSGKTTLTLQVIAAAQREGKTCAFID 69 (289) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC T ss_pred CCCCCCEEEHHHHHHHHHCCCEEEEEC T ss_conf 667871560367777764488037732 No 65 >>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} (A:128-368) Probab=84.80 E-value=2.7 Score=22.26 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=35.0 Q ss_pred CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 46433889889982300078887489999999985247315987604 Q gi|254780401|r 37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 37 ~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) ......+.|||+| +|=.|||-++.+|+..|+..|++++..+-+ T Consensus 12 l~~~~~~~~vI~V----tGT~GKTTt~~li~~iL~~~g~~~~~~~s~ 54 (241) T 2wtz_A 12 YGHPSERLTVIGI----TGTSGKTTTTYLVEAGLRAAGRVAGLIGTI 54 (241) T ss_dssp TTCGGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEESSS T ss_pred HCCCCCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCEECCCC T ss_conf 6683127858999----799988999999999986245543002554 No 66 >>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* (A:82-305) Probab=84.77 E-value=0.71 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=30.4 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 889889982300078887489999999985247315987604578 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) ...|||+| .|--|||.++.+|...|++.|++++.. .+++. T Consensus 17 ~~~~vi~V----tGT~GKTTt~~li~~iL~~~g~~~~~~-~~~~~ 56 (224) T 2am1_A 17 TTVDVFAV----TGSNGKTTTKDXLAHLLSTRYKTYKTQ-GNYNN 56 (224) T ss_dssp HCCEEEEE----ECCCSSSCHHHHHHHHHTTTSCEEECC-TTCCS T ss_pred CCCCEEEE----CCCCHHHHHHHHHHHHHHHCCCCEEEC-CCCCC T ss_conf 56506996----242011477799999988616735405-86035 No 67 >>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} (A:) Probab=83.91 E-value=0.41 Score=28.10 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=32.6 Q ss_pred EEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 8998-230007888748999999998524731598760457877 Q gi|254780401|r 46 VICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338) Q Consensus 46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338) +|+| |+. |+|||-++..|++.|...++.++.+.|.+.... T Consensus 4 iI~i~G~~---GsGKsT~a~~L~~~l~~~~~~~~~~~~~~~~~~ 44 (241) T 2ocp_A 4 RLSIEGNI---AVGKSTFVKLLTKTYPEWHVATEPVATWQNIQA 44 (241) T ss_dssp EEEEEECT---TSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC- T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEC T ss_conf 89998999---886999999999987304874134575321455 No 68 >>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} (A:) Probab=83.63 E-value=3.4 Score=21.58 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=24.8 Q ss_pred ECCEEE---CCCCCCHHHHHHHHHHHH-CCCCEEEEEEC Q ss_conf 823000---788874899999999852-47315987604 Q gi|254780401|r 49 VGGFVM---GGTGKTPTALAIAKAVID-KNLKPGFLSRG 83 (338) Q Consensus 49 VGNitv---GGtGKTP~v~~l~~~l~~-~g~~~~ilsRG 83 (338) -||+.+ .|+|||-+.-+|++++.. .+.++.++..- T Consensus 25 ~g~ili~GptGsGKTTll~al~~~~~~~~~~~v~~iEd~ 63 (261) T 2eyu_A 25 XGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDP 63 (261) T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 987999899999799999999997456436442203433 No 69 >>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} (A:) Probab=83.55 E-value=1.9 Score=23.32 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=33.1 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 98899823000788874899999999852473159876045787 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) .-|+..|. -|+|||-++..|++.|...++.+.+++|..... T Consensus 10 ~~I~i~G~---~GsGKST~a~~La~~l~~~~~~~~~~~~~~~~~ 50 (215) T 1nn5_A 10 ALIVLEGV---DRAGKSTQSRKLVEALCAAGHRAELLRFPERST 50 (215) T ss_dssp CEEEEEES---TTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTS T ss_pred EEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 49999899---888899999999999986799669996489986 No 70 >>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} (A:150-424,A:686-712) Probab=83.34 E-value=0.77 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.090 Sum_probs=20.1 Q ss_pred CCCCCCHHHHHHHHHHHHCC--CCEEEEE Q ss_conf 78887489999999985247--3159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKN--LKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g--~~~~ils 81 (338) =|+|||=+++.++..+...| .++.||. T Consensus 30 ~G~GKT~~ai~~~~~l~~~~~~~~vLIv~ 58 (302) T 3dmq_A 30 VGLGKTIEAGXILHQQLLSGAAERVLIIV 58 (302) T ss_dssp TTSCHHHHHHHHHHHHHHTSSCCCEEEEC T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 96359999999999999838999689998 No 71 >>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} (A:1-111,A:240-423) Probab=82.94 E-value=1.9 Score=23.38 Aligned_cols=196 Identities=17% Similarity=0.235 Sum_probs=103.2 Q ss_pred CCCCCEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEECC--------CCCC--CCCEEEECCCCCHHHHCCHH Q ss_conf 38898899823000--788874899999999852473159876045--------7877--77558714567887704212 Q gi|254780401|r 41 HAPIPVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRGY--------GRKS--RISFRVDLEKHSAYDVGDEP 108 (338) Q Consensus 41 ~~~~pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY--------g~~~--~~~~~v~~~~~~~~~vGDEp 108 (338) ..+..+|.|-.++- ||-|||-+++-|+..|.+.|+++.+--|.= .+.. .|...+.+.. +.-=-| T Consensus 40 ~~~~k~IlVTSi~PtkgGEGKSTvsiNLA~aLA~~GkkVllDLR~PSl~~~fGikg~a~~~Gls~vLp~e----diA~~P 115 (295) T 3do6_A 40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSXSLNRIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSD----EIAINP 115 (295) T ss_dssp SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCHHHHHHSCCSTTEETTEEEESHH----HHTTSC T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECH----HHHHHH T ss_conf 8995699997368888889851119989999875376336897257778720555666777721566205----637676 Q ss_pred HHHHH--CCC----------CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHH Q ss_conf 33220--576----------346520122566410245747997183223441230699996184335665537613652 Q gi|254780401|r 109 LLLAR--RAV----------TIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLR 176 (338) Q Consensus 109 ~lla~--~~p----------v~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLR 176 (338) -|... ..| +.-+.+-..|-+.+.+. .|++|-.-| ||-+ T Consensus 116 nlvqt~e~tp~~vHgGPFaNIAhG~nSviat~~al~l-~dyvvtEaG--------------------fgaD--------- 165 (295) T 3do6_A 116 NLVQTTEGTPALIHCGPFANIAHGTNSIIATKXAXKL-SEYTVTEAG--------------------FGAD--------- 165 (295) T ss_dssp EEEEETTSCEEEECCCCCSSSSCCBCCHHHHHHHHHH-CSEEEEEBS--------------------SSTT--------- T ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEEC--------------------CCCC--------- T ss_conf 7660025885455167531212575389999998851-676996301--------------------3677--------- Q ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH---HH---CCCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCCCC Q ss_conf 100255665145442044124577631350111222---20---13211168638987-415535789998874010000 Q gi|254780401|r 177 VPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKL---KP---RLTFDLSGKKVLAF-SGIADTEKFFTTVRQLGALIE 249 (338) Q Consensus 177 Ep~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~---~~---~~~~~l~~k~v~af-sGIa~P~~F~~~L~~~g~~i~ 249 (338) +- +-|-.|+..-. .... +..-+..+.. +. ....++...++-++ .|..|=++-.+.++++|..++ T Consensus 166 --lG-aeKf~dikcr~----~g~~--p~~~vlvat~ralk~hgg~~~~~~~~~n~~a~~~G~~nl~~hi~n~~~~g~~~v 236 (295) T 3do6_A 166 --LG-AEKFIDFVSRV----GGFY--PNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLPVV 236 (295) T ss_dssp --TH-HHHHHHTHHHH----HTCC--CSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEE T ss_pred --CC-CHHHCCCCCCC----CCCC--CCEEEEEEEECHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf --67-45334765257----8898--753899986001004799984774740899998676679999875665089826 Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHHCCCE-EEEC Q ss_conf 122-14332348989999999975647987-9985 Q gi|254780401|r 250 QCY-SFGDHAHLSDKKIAYLLDQAQQKGLI-LVTT 282 (338) Q Consensus 250 ~~~-~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTT 282 (338) -.+ .|++- |+.+++.+.+.+++.+.. .+++ T Consensus 237 vaiN~f~~D---t~~Ei~~~~~~~~~~g~~~~~~~ 268 (295) T 3do6_A 237 VALNRFSTD---TEKEIAYVVKECEKLGVRVAVSE 268 (295) T ss_dssp EEEECCTTC---CHHHHHHHHHHHHTTTCEEEEEC T ss_pred ECCCCCCCC---CHHHHHHHHHHHHHCCCCCEECC T ss_conf 646888876---27789999999876387512225 No 72 >>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} (A:93-292) Probab=82.91 E-value=1 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |+.+| .+|+|||-.+-.++-.+..+|.+++|+.-. T Consensus 11 iii~G---~tG~GKTT~ipq~~~~~~~~g~~~~i~~~d 45 (200) T 3b9q_A 11 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 45 (200) T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCC T ss_pred EEECC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 99616---655541157999999998558874157512 No 73 >>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} (A:150-349) Probab=82.91 E-value=1 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |+.+| .+|+|||-.+-.++-.+..+|.+++|+.-. T Consensus 11 iii~G---~tG~GKTT~ipq~~~~~~~~g~~~~i~~~d 45 (200) T 2og2_A 11 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 45 (200) T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCC T ss_pred EEEEC---CCCHHHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 99705---531366778999999998610465057740 No 74 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1-244,A:315-356) Probab=82.85 E-value=0.86 Score=25.81 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++-++......|.+++.++ T Consensus 43 pGsGKTtl~lq~~~~~~~~g~~viyid 69 (286) T 3cmu_A 43 ESSGKTTLTLQVIAAAQREGKTCAFID 69 (286) T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC T ss_pred CCCCCCEEEEHHHHHHHHCCCCEEEEC T ss_conf 767850476134567763587025632 No 75 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1055-1291,A:1361-1404) Probab=82.72 E-value=2.5 Score=22.47 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++.++...+..|.+++.++ T Consensus 36 pGsGKTtLaL~~~~~~~~~g~~vlyID 62 (281) T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (281) T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC T ss_pred CCCCCEEEEEEECCHHHHCCCCHHHCC T ss_conf 778847886410373332355101000 No 76 >>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} (A:144-361) Probab=82.38 E-value=3.8 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=22.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874899999999852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) .|+|||.+..+|+..+... .++.++-... T Consensus 41 tgSGKTT~l~aL~~~~~~~-~~iv~iEd~~ 69 (218) T 2gza_A 41 TGSGKTTLMKALMQEIPFD-QRLITIEDVP 69 (218) T ss_dssp SSSCHHHHHHHHHTTSCTT-SCEEEEESSS T ss_pred CCCCHHHHHHHHHHHHHHC-CCEEEEECCH T ss_conf 9886689999999764213-5505750544 No 77 >>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Dugesia japonica} (A:) Probab=82.35 E-value=1.6 Score=23.99 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=59.7 Q ss_pred CCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH Q ss_conf 788874-89999999985247315987604578777755871456788770421233220576----3465201225664 Q gi|254780401|r 55 GGTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM 129 (338) Q Consensus 55 GGtGKT-P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~ 129 (338) =||||| -+++-+.+.+......... .+....-..+++.+...-+.++.+|-..+....+ .+.+......... T Consensus 69 TGSGKTlayllPil~~l~~~~~~~~~---~~~~~~~~alvl~PTrELa~Qi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (253) T 1wrb_A 69 TGSGKTAAFLIPIINHLVCQDLNQQR---YSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR 145 (253) T ss_dssp TTSSHHHHHHHHHHHHHHTTCC---------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH T ss_pred CCCCCCEEEHHHHHHHHHHCCCCCCC---CCCCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHH T ss_conf 87554055388899998722222223---466788469995461553010122110002578846999834510046766 Q ss_pred HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC Q ss_conf 10245747997183-----2-2344123069999618 Q gi|254780401|r 130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS 160 (338) Q Consensus 130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~ 160 (338) ....+++++|..-| . .+.---+++..+++|- T Consensus 146 ~~~~~~~ilv~Tpgrl~~~~~~~~~~l~~ik~lVlDE 182 (253) T 1wrb_A 146 EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253) T ss_dssp HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET T ss_pred HHCCCCCEEEECHHHHHHHHCCCCEECCCCCEEEEEE T ss_conf 4026874477267998776616816635540588873 No 78 >>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} (A:71-285) Probab=82.21 E-value=1.2 Score=24.71 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=25.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++.++-...++|.++..+| T Consensus 13 pGsGKT~l~lq~~~~~~~~G~~vlyis 39 (215) T 1xp8_A 13 ESGGKTTLALAIVAQAQKAGGTCAFID 39 (215) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 774068999999999960798089980 No 79 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:706-942,A:1014-1055) Probab=81.33 E-value=1.2 Score=24.76 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++-++......|.+++.++ T Consensus 36 pGsGKT~lal~~~~~~~~~g~~viyID 62 (279) T 3cmw_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (279) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC T ss_pred CCCCCEEEEHHHHHHHHHCCCEEEEEC T ss_conf 877726775887687773166345540 No 80 >>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (D:111-360,D:596-608) Probab=81.28 E-value=1.3 Score=24.61 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=21.6 Q ss_pred ECCCCCCHHHHHHHHHHHHCCC----CEEEEE Q ss_conf 0788874899999999852473----159876 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNL----KPGFLS 81 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~----~~~ils 81 (338) ..|||||-+...++.+|...+. ++.+++ T Consensus 62 ppGTGKT~~l~~~i~~l~~~~~~~~~~Il~~a 93 (263) T 1w36_D 62 GPGTGKTTTVAKLLAALIQMADGERCRIRLAA 93 (263) T ss_dssp CTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 99986403299999999997504897599973 No 81 >>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} (A:) Probab=81.25 E-value=1.4 Score=24.33 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=29.5 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 898899823000788874899999999852473159876 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) +-.++-.|. -|||||-+..++++.+...++++..++ T Consensus 54 ~~~l~l~G~---~G~GKThLa~ai~~~~~~~~~~~~~~~ 89 (202) T 2w58_A 54 MKGLYLHGS---FGVGKTYLLAAIANELAKRNVSSLIVY 89 (202) T ss_dssp CCEEEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEEE T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 874899899---989789999999999754257358993 No 82 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:706-942,A:1014-1054) Probab=81.21 E-value=1.1 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++-++...+..|.+++.++ T Consensus 36 pGsGKTtl~l~~~~~~~~~g~~viyid 62 (278) T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (278) T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECC T ss_conf 877703668987655553155012004 No 83 >>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} (A:) Probab=81.11 E-value=1 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.2 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 07888748999999998524731598760457 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) ..|+|||-++..|++.|...++....++++.. T Consensus 11 ~~GsGKtTla~~L~~~l~~~~~~~~~~~~~~~ 42 (192) T 1kht_A 11 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192) T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH T ss_conf 99969899999999999875997699867866 No 84 >>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} (A:) Probab=80.98 E-value=2.6 Score=22.37 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=32.5 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 8899823000788874899999999852473159876045787 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) -|...|+. |+|||-++..|++.|...++.+....+-..+. T Consensus 5 ~I~i~G~~---GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~ 44 (213) T 4tmk_A 5 YIVIEGLE---GAGKTTARNVVVETLEQLGIRDMVFTREPGGT 44 (213) T ss_dssp EEEEEECT---TSCHHHHHHHHHHHHHHTTCCCEEEEESSCSS T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 89998998---88699999999999986799849983198996 No 85 >>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} (A:104-300) Probab=80.97 E-value=2.9 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=29.2 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 988998230007888748999999998524731598760 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) +|||.| .|=-|||-++.+|+..|++.|++++..+- T Consensus 2 ~~vi~V----tGt~GKTtt~~ll~~iL~~~g~~~~~~~~ 36 (197) T 2jfg_A 2 APIVAI----TGSNGKSTVTTLVGEMAKAAGVNVGVGGN 36 (197) T ss_dssp SCEEEE----ECSSSHHHHHHHHHHHHHHTTCCEEEEET T ss_pred CEEEEE----ECCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 505875----21225337788888764320333322332 No 86 >>2i5e_A Hypothetical protein MM_2497; APC86122, hypothetic protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei GO1} (A:1-170) Probab=80.84 E-value=4.3 Score=20.88 Aligned_cols=38 Identities=3% Similarity=-0.182 Sum_probs=31.3 Q ss_pred EEECCCCCC----------------HHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 000788874----------------89999999985247315987604578777 Q gi|254780401|r 52 FVMGGTGKT----------------PTALAIAKAVIDKNLKPGFLSRGYGRKSR 89 (338) Q Consensus 52 itvGGtGKT----------------P~v~~l~~~l~~~g~~~~ilsRGYg~~~~ 89 (338) |-+||.||| |+..|..+.|++.|..-.++..+|..... T Consensus 9 IlAaG~G~tRl~~~~pK~l~~i~gkpli~~~l~~l~~~g~~~iviv~~~~~~~~ 62 (170) T 2i5e_A 9 PYKKAGAKSRLSPVLSLQEREEFVELXLNQVISSLKGAGIEQVDILSPSVYGLE 62 (170) T ss_dssp ECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTCS T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH T ss_conf 769998867878648999999999999999999986279809999828756777 No 87 >>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} (A:) Probab=80.70 E-value=1.9 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |..-||+ |+|||-++..|++.|..+|+.++.+..+ T Consensus 15 I~ieG~~---GsGKSTl~~~La~~L~~~~~~v~~~~ep 49 (341) T 1osn_A 15 IYLDGAY---GIGKTTAAEEFLHHFAITPNRILLIGEP 49 (341) T ss_dssp EEEEESS---SSCTTHHHHHHHHTTTTSGGGEEEECCC T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 9998986---7789999999999872369856997086 No 88 >>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} (A:1-297) Probab=80.64 E-value=4.3 Score=20.83 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=62.8 Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHH--------- Q ss_conf 64338898899823000788874899999999852473159876045787777558714567887704212--------- Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEP--------- 108 (338) Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp--------- 108 (338) .....+.|||+| +|=-|||.++.+|+..|+..|++++....+.-..............+ ...+++. T Consensus 33 ~~~~~~~~vI~V----tGT~GKTTtt~ll~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 107 (297) T 1jbw_A 33 GNPQQQGRYIHV----TGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIP-DAALVNAVAFVRAALE 107 (297) T ss_dssp TCGGGSSCEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECC-HHHHHHHHHHHHHHHH T ss_pred CCHHHHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEECC-HHHHHHHHHHHHHHHH T ss_conf 992870998999----79822799999999999978998899788772720348999999658-8999988878899999 Q ss_pred HHHHHC--CCCCCCCCHHHHH-HHHCCCCCCEEEECCCCCC---C--CCCCEEEEEE Q ss_conf 332205--7634652012256-6410245747997183223---4--4123069999 Q gi|254780401|r 109 LLLARR--AVTIVTSDRKIGV-QMLLQEGVDIIIMDDGFHS---A--DLQADFSLIV 157 (338) Q Consensus 109 ~lla~~--~pv~V~~~R~~~~-~~~~~~~~diiIlDDGfQh---~--~l~rdl~Ivl 157 (338) .+.... .|+.+...-.... ......+.++.+++-+... . .+..|+-++. T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~p~v~iit 164 (297) T 1jbw_A 108 RLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLT 164 (297) T ss_dssp HHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSCCCSEEEEC T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCEEEECCEEEEC T ss_conf 998724788888999999999999987268689996233554146267530123432 No 89 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:357-593,A:665-705) Probab=80.54 E-value=1.2 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++.++......|.+++.++ T Consensus 36 pGsGKTtl~l~~~~~~~~~g~~vlyId 62 (278) T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (278) T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC T ss_pred CCCCCEEEEHHHHHHHHHCCCEEEEEE T ss_conf 778842420578887874487468973 No 90 >>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (A:1-208) Probab=80.30 E-value=2.8 Score=22.14 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=23.3 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8898899823000788874899999999852473159876 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .+-.++-.|. -|||||-++..+|+.+. +.+..++ T Consensus 76 ~~~~~Ll~GP---pGtGKT~~A~~lA~~~~---~~~~~~~ 109 (208) T 1sxj_A 76 VFRAAMLYGP---PGIGKTTAAHLVAQELG---YDILEQN 109 (208) T ss_dssp SCSEEEEECS---TTSSHHHHHHHHHHHTT---CEEEEEC T ss_pred CCCEEEEECC---CCHHHHHHHHHHHHHHC---CCEEEEE T ss_conf 8777999899---97159999999999859---9889995 No 91 >>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens} (A:) Probab=80.03 E-value=2.5 Score=22.48 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=56.2 Q ss_pred EECCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHH Q ss_conf 00788874-89999999985247315987604578777755871456788770421233220576----34652012256 Q gi|254780401|r 53 VMGGTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGV 127 (338) Q Consensus 53 tvGGtGKT-P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~ 127 (338) .-=||||| -+++-+...+.... +..+........+.+...-+.++-+|...+..... .+++....... T Consensus 73 A~TGSGKT~af~lPil~~l~~~~-------~~~~~~~~~~iil~PTRELa~Qi~~~~~~~~~~~~~~~~~~~~g~~~~~~ 145 (242) T 3fe2_A 73 AQTGSGKTLSYLLPAIVHINHQP-------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 145 (242) T ss_dssp ECTTSCHHHHHHHHHHHHHHTSC-------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHH T ss_pred CCCCCCCCCCCCCCHHHHHCCCC-------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH T ss_conf 57999864211451111100255-------31025786899965989999979999999733477589997089887999 Q ss_pred HHHCCCCCCEEEECCCC-----C--CCCCCCEEEEEEEC Q ss_conf 64102457479971832-----2--34412306999961 Q gi|254780401|r 128 QMLLQEGVDIIIMDDGF-----H--SADLQADFSLIVVN 159 (338) Q Consensus 128 ~~~~~~~~diiIlDDGf-----Q--h~~l~rdl~Ivl~d 159 (338) ....+.++|++|---|- + +..+ ..+..+++| T Consensus 146 ~~~l~~~~~iiV~TPgrl~~~~~~~~~~l-~~l~~lVlD 183 (242) T 3fe2_A 146 IRDLERGVEICIATPGRLIDFLECGKTNL-RRTTYLVLD 183 (242) T ss_dssp HHHHHHCCSEEEECHHHHHHHHHHTSCCC-TTCCEEEET T ss_pred HHHHHCCCCEEEECCCHHHHHHHCCCCCC-CCCEEEEEE T ss_conf 99972799999989820687872383403-446399985 No 92 >>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} (A:117-325) Probab=79.57 E-value=1.9 Score=23.42 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=31.4 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 889982300078887489999999985247315987604578 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) |||. .+|-.|||-++.+|+..|++.|++++....+..- T Consensus 3 ~vI~----VtGTnGKttt~~~l~~iL~~~g~~~~~~~~~~~~ 40 (209) T 1p3d_A 3 HGIA----VAGTHGKTTTTAXISXIYTQAKLDPTFVNGGLVK 40 (209) T ss_dssp EEEE----EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEET T ss_pred EEEE----EECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 2678----8644688600499999999789987899898336 No 93 >>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} (A:91-337) Probab=78.64 E-value=5 Score=20.41 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=35.4 Q ss_pred HCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 046433889889982300078887489999999985247315987604 Q gi|254780401|r 36 RGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 36 ~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) +........|||+| +|=.|||-++.+++..|+..|+.++..+-. T Consensus 10 ~~~~~~~~~~vI~V----tGT~GKTTtt~ll~~il~~~g~~~~~~~~~ 53 (247) T 1e8c_A 10 FYHEPSDNLRLVGV----TGTNGKTTTTQLLAQWSQLLGEISAVXGTV 53 (247) T ss_dssp HTTCGGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEEETT T ss_pred HHHCHHCCCCEEEE----ECCCCCHHHHHHHHHHHHHHCCCEEEECCC T ss_conf 86372117848999----789997789999999999829964760666 No 94 >>1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} (A:1-147) Probab=77.40 E-value=5.4 Score=20.16 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=24.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -++|||-..+-.++.+...|.++.++. T Consensus 17 M~SGKTteLl~~~~~~~~~g~kvl~ik 43 (147) T 1xx6_A 17 XYSGKSEELIRRIRRAKIAKQKIQVFK 43 (147) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 077899999999999998799299998 No 95 >>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} (A:112-310) Probab=77.03 E-value=3.6 Score=21.41 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=28.4 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .|||+| +|=-|||-++.+|+..|++.|.+++... T Consensus 1 ~~vi~V----tGT~GKTtt~~~l~~iL~~~g~~~~~~~ 34 (199) T 3lk7_A 1 SQLIGI----TGSNGKTTTTTXIAEVLNAGGQRGLLAG 34 (199) T ss_dssp SEEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCEEEE----EEECCCCHHHHHHHHHHHHCCCCCEECC T ss_conf 977999----8035863389999999986054530013 No 96 >>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} (A:147-418) Probab=76.83 E-value=4.4 Score=20.76 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=20.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 78887489999999985247315987 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) -|+|||-+...|++++......+.+. T Consensus 30 tGsGKTtl~~al~~~~~~~~~~~~~~ 55 (272) T 1p9r_A 30 TGSGKSTTLYAGLQELNSSERNILTV 55 (272) T ss_dssp TTSCHHHHHHHHHHHHCCTTSCEEEE T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 98864268998754614688459996 No 97 >>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 (1:261-446) Probab=76.64 E-value=3.3 Score=21.66 Aligned_cols=29 Identities=24% Similarity=0.116 Sum_probs=21.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874899999999852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) -|+|||-+.-+|++.+... .+++++--.+ T Consensus 9 tGSGKTTll~aL~~~i~~~-~~~~~ied~~ 37 (186) T 2oap_1 9 TASGKTTTLNAIXXFIPPD-AKVVSIEDTR 37 (186) T ss_dssp TTSSHHHHHHHHGGGSCTT-CCEEEEESSC T ss_pred CCCCHHHHHHHHHHHCCCC-CCCCCCCCCC T ss_conf 6555489999999746765-6622123662 No 98 >>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} (A:1-125,A:255-437) Probab=76.64 E-value=4.3 Score=20.85 Aligned_cols=187 Identities=18% Similarity=0.224 Sum_probs=98.2 Q ss_pred CCCCEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEEC--------CCCCC--CCCEEEECCCCCHHHHCCH-- Q ss_conf 8898899823000--78887489999999985247315987604--------57877--7755871456788770421-- Q gi|254780401|r 42 APIPVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRG--------YGRKS--RISFRVDLEKHSAYDVGDE-- 107 (338) Q Consensus 42 ~~~pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRG--------Yg~~~--~~~~~v~~~~~~~~~vGDE-- 107 (338) .+..+|.|-.++- +|-|||-+++-|+..|.+.|+++.+--|. -++.. .|...+.+ ||+ T Consensus 55 ~~~kvIlVTSitPt~~GEGKTTtsiNLA~aLA~~GkkvlaDLR~PSL~~~fGikgga~g~GLsqvL~--------ge~~~ 126 (308) T 1eg7_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVP--------MEDII 126 (308) T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCSTHHHHTTCCCSEETTEEEEC--------HHHHT T ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--------HHHHC T ss_conf 9965999962589888887400198899999862984589972588788557545656676110130--------34401 Q ss_pred -HHHHHH--CCC----------CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH Q ss_conf -233220--576----------3465201225664102457479971832234412306999961843356655376136 Q gi|254780401|r 108 -PLLLAR--RAV----------TIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGP 174 (338) Q Consensus 108 -p~lla~--~~p----------v~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGp 174 (338) |-|+.. ..| +.-+.+-..|-+.+.+. .|++|-.-|| |-+ T Consensus 127 ~Pnlvqt~e~~p~~vh~gPFaNIAhG~nsv~a~~~al~l-~dyvvtEaGf--------------------g~d------- 178 (308) T 1eg7_A 127 KPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKL-ADYVVTEAGF--------------------GAD------- 178 (308) T ss_dssp SCEEEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHH-CSEEEEEBSS--------------------CTT------- T ss_pred CCCCEEECCCCCEEEECCCHHHHHCCCHHHHHHHHHHHH-CCEEEEECCC--------------------CCC------- T ss_conf 631032058973678337378765466299999999862-7858741234--------------------777------- Q ss_pred HHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH---HH---CCCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCC Q ss_conf 52100255665145442044124577631350111222---20---13211168638987-4155357899988740100 Q gi|254780401|r 175 LRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKL---KP---RLTFDLSGKKVLAF-SGIADTEKFFTTVRQLGAL 247 (338) Q Consensus 175 LREp~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~---~~---~~~~~l~~k~v~af-sGIa~P~~F~~~L~~~g~~ 247 (338) +- +-|-.|+..- ..... +..-+..+.. +. ....++...++-|+ .|.+|=++-.+.++.+|.. T Consensus 179 ----lG-~eKf~dikcr----~~g~~--p~~~v~vat~ralk~hgg~~~~~~~~~n~~a~~~G~~nl~~hi~n~~~~g~p 247 (308) T 1eg7_A 179 ----LG-AEKFYDVKCR----YAGFK--PDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVP 247 (308) T ss_dssp ----TH-HHHHHHTHHH----HHTCC--CCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTTTCC T ss_pred ----CC-CHHHCCCCCC----CCCCC--CCEEEEEEEHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf ----57-3321473112----47989--9889999545778774899837637618999998888999999999974998 Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCE Q ss_conf 0012-214332348989999999975647987 Q gi|254780401|r 248 IEQC-YSFGDHAHLSDKKIAYLLDQAQQKGLI 278 (338) Q Consensus 248 i~~~-~~fpDHh~ys~~dl~~i~~~a~~~~~~ 278 (338) ++-. -.|++- ++.+++.+.+.+++.+.. T Consensus 248 ~vVaiN~f~~D---t~~Ei~~i~~~~~~~g~~ 276 (308) T 1eg7_A 248 AVVAINAFPTD---TEAELNLLYELCAKAGAE 276 (308) T ss_dssp EEEEEECCTTC---CHHHHHHHHHHTTTSEEE T ss_pred EEEEEECCCCC---CHHHHHHHHHHHHHCCCE T ss_conf 59997079998---888999999999977998 No 99 >>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} (A:93-290) Probab=76.30 E-value=2.2 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=26.9 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 078887489999999985247315987604 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) .-|+|||-+.-.|+..|+..|.++.+.... T Consensus 15 ~nGsGKSTl~~~Lag~l~~~gg~v~~~g~d 44 (198) T 2qy9_A 15 VNGVGKTTTIGKLARQFEQQGKSVMLAAGD 44 (198) T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCEEEECCC T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEEEEC T ss_conf 333465404889999987446750699731 No 100 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:582-783) Probab=75.97 E-value=5.8 Score=19.90 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=52.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCC----CCCCHHHH Q ss_conf 7888748999999998524731598760457877775587145678877042123322057----634----65201225 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTI----VTSDRKIG 126 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~----V~~~R~~~ 126 (338) =|+|||-+....+-...+.|.++.++. +...-+.+.=++-.-+.... .++ -+..+... T Consensus 52 TGsGKT~~~~~~i~~~~~~~~~vl~i~--------------P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (202) T 2eyq_A 52 VGFGKTEVAMRAAFLAVDNHKQVAVLV--------------PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 117 (202) T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEEC--------------SSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE--------------CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH T ss_conf 678714999999998740597389981--------------637779999999999751159789992486643149999 Q ss_pred HHHHCCCCCCEEEE-CCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 66410245747997-1832234412306999961843356 Q gi|254780401|r 127 VQMLLQEGVDIIIM-DDGFHSADLQADFSLIVVNSHRGLG 165 (338) Q Consensus 127 ~~~~~~~~~diiIl-DDGfQh~~l~rdl~Ivl~d~~~~~g 165 (338) ........+++++. .+-+++.....+++.+++|-..-++ T Consensus 118 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~IiDE~H~~~ 157 (202) T 2eyq_A 118 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 157 (202) T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSC T ss_pred HHHHCCCCEEEEECCHHHHHEEEECCCCCCEEECHHHHHH T ss_conf 9763389802886302242100101556735603255556 No 101 >>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} (A:) Probab=75.92 E-value=2 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=22.3 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 388988998230007888748999999998524731598 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338) ..+-+++-+|.- |||||=++.++|+.+...++.+.. T Consensus 150 ~~~~gill~Gpp---GtGKT~La~aia~~~~~~~~~v~~ 185 (308) T 2qgz_A 150 AEQKGLYLYGDM---GIGKSYLLAAMAHELSEKKGVSTT 185 (308) T ss_dssp SSCCEEEEECST---TSSHHHHHHHHHHHHHHHSCCCEE T ss_pred CCCCEEEEECCC---CCCCHHHHHHHHHHHHHCCCCHHH T ss_conf 678808998989---998058999999999863431012 No 102 >>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} (A:) Probab=75.84 E-value=2.1 Score=23.11 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=25.1 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 78887489999999985247315987604 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) -|||||-++-.|+..+...+.++.+.... T Consensus 10 ~G~GKTTl~~~l~~~l~~~~~~v~~~~~~ 38 (189) T 2i3b_A 10 PGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189) T ss_dssp CSSCHHHHHHHHHHHHHHTTCCCEEEECC T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 99809999999999999779968799832 No 103 >>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} (A:) Probab=75.32 E-value=6.1 Score=19.79 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=32.0 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEC Q ss_conf 000788874899999999852473159876045787777558714 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL 96 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~ 96 (338) +.+|||| -+=.+|++.|.++|+.+.++.|.-.........+.. T Consensus 16 LItGatG--fiG~~lv~~L~~~g~~v~~~~r~~~~~~~~~~~~~~ 58 (321) T 2pk3_A 16 LITGVAG--FVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISL 58 (321) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEEC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEE T ss_conf 9967888--899999999997849899981887124689769994 No 104 >>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} (A:118-326) Probab=75.28 E-value=2.9 Score=22.03 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=29.5 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 0078887489999999985247315987604578 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) ++|=.|||-++.+|+..|+..|++++..+-+..- T Consensus 7 VtGT~GKtst~~~l~~iL~~~g~~~~~~~~~~~~ 40 (209) T 2f00_A 7 IAGTHGKTTTTAXVSSIYAEAGLDPTFVNGGLVK 40 (209) T ss_dssp EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEET T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 7503474318999999999769981899688667 No 105 >>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... (A:35-271) Probab=75.10 E-value=2.7 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|||||-++..++......|.++..++ T Consensus 36 pGsGKT~l~lq~~~~~~~~g~~v~yi~ 62 (237) T 2zr9_A 36 ESSGKTTVALHAVANAQAAGGIAAFID 62 (237) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 767789999999987525898799998 No 106 >>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A (A:) Probab=74.80 E-value=5.5 Score=20.11 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=37.1 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCC------CCCCCCCCEEEEEEECCCC Q ss_conf 76346520122566410245747997183------2234412306999961843 Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDG------FHSADLQADFSLIVVNSHR 162 (338) Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDG------fQh~~l~rdl~Ivl~d~~~ 162 (338) +.|.++.+-.+|...+.+..+|+|++|++ ++=....+++-++++.+.. T Consensus 43 ~~v~~a~~g~eAl~~~~~~~~dli~~d~~~p~~~~~~~~~~~~~~pvI~~t~~~ 96 (137) T 2pln_A 43 FXADVTESLEDGEYLXDIRNYDLVXVSDKNALSFVSRIKEKHSSIVVLVSSDNP 96 (137) T ss_dssp CEEEEESCHHHHHHHHHHSCCSEEEECSTTHHHHHHHHHHHSTTSEEEEEESSC T ss_pred CEEEEECCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 999998887999999874423298854122014677876630333211456778 No 107 >>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} (A:1-191,A:370-394) Probab=74.68 E-value=1 Score=25.21 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=73.7 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---EEEECCCCCHHHHCCHHHHHHHCCCC Q ss_conf 388988998230007888748999999998524731598760457877775---58714567887704212332205763 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRIS---FRVDLEKHSAYDVGDEPLLLARRAVT 117 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~---~~v~~~~~~~~~vGDEp~lla~~~pv 117 (338) +.+..|+.|.--..||.+ -.+..|++.|.++|+.|.|++.+++...... ..+..-... ..+.+ ..+. T Consensus 13 ~MKmkI~~v~~p~~GG~~--~~~~~la~~L~~~G~eV~vit~~~~~~~~~~~~~~~~~~i~~~-----~~~~~---~~~~ 82 (216) T 2jjm_A 13 HMKLKIGITCYPSVGGSG--VVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVN-----QYSVF---QYPP 82 (216) T ss_dssp --CCEEEEECCC--CHHH--HHHHHHHHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC---------C---CSCC T ss_pred CCCCEEEEECCCCCCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC-----CCCCC---CCCH T ss_conf 865779998999999699--9999999999977998999947998642113797069970456-----66610---1560 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEECCCCCCCC--------CCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH Q ss_conf 4652012256641024574799718322344--------12306999961843356655376136521002556651454 Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMDDGFHSAD--------LQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI 189 (338) Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~--------l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v 189 (338) ..-.--..-.+.+.+.++|+|..-.++.+.. ..+++-++.... +.......-...++.-....+++||.+ T Consensus 83 ~~~~~~~~l~~~i~~~~~DiIh~h~~~~~~~~~~l~~~~~~~~ip~v~~~h--~~~~~~~~~~~~~~~~~~~~~~~ad~i 160 (216) T 2jjm_A 83 YDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLH--GTDITVLGSDPSLNNLIRFGIEQSDVV 160 (216) T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECC--HHHHHTTTTCTTTHHHHHHHHHHSSEE T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHHCCEE T ss_conf 358999999999887098489832433116899999875056773355311--222100014778889999999744176 Q ss_pred HHCCC Q ss_conf 42044 Q gi|254780401|r 190 LYVGN 194 (338) Q Consensus 190 i~~~~ 194 (338) +.... T Consensus 161 iavS~ 165 (216) T 2jjm_A 161 TAVSH 165 (216) T ss_dssp EESCH T ss_pred EEECC T ss_conf 75202 No 108 >>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2} (A:) Probab=74.61 E-value=2.5 Score=22.48 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=27.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 8998230007888748999999998524731598760 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) +...|. =|+|||-+++-++....+.|.++..++- T Consensus 26 ~~i~G~---pGsGKT~l~lql~~~~~~~g~~~~yi~~ 59 (235) T 2w0m_A 26 IALTGE---PGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235) T ss_dssp EEEECS---TTSSHHHHHHHHHHHHHHHTCCEEEEES T ss_pred EEEEEC---CCCCHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999968---9999999999999998762014444434 No 109 >>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:1-166) Probab=74.60 E-value=2.9 Score=22.07 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=28.8 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 38898899823000788874899999999852473159876 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..+-.++-.|.- |||||-++.++++.+...++.+...+ T Consensus 35 ~~~~~~ll~Gpp---GtGKT~la~aia~~~~~~~~~~~~~~ 72 (166) T 1l8q_A 35 SLYNPIFIYGSV---GTGKTHLLQAAGNEAKKRGYRVIYSS 72 (166) T ss_dssp TSCSSEEEECSS---SSSHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 667618988899---99899999999999985499759944 No 110 >>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A (A:142-422) Probab=74.53 E-value=5.6 Score=20.01 Aligned_cols=97 Identities=14% Similarity=-0.023 Sum_probs=52.5 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC---------CCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC Q ss_conf 2300078887489999999985247315987604578---------7777558714567887704212332205763465 Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR---------KSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120 (338) Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~---------~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~ 120 (338) |=+.-=|+|||-+...+++........++...++.+. .....+.+... -|||.+..-.+|-. T Consensus 37 ~I~~~~g~GKt~ll~~i~~~~~~~~~v~~~~~~~~~e~~e~~~~~~~~~~svvv~~t-------sd~~~~~r~~~~~~-- 107 (281) T 3ice_A 37 LIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVAST-------FDEPASRHVQVAEX-- 107 (281) T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEEC-------TTSCHHHHHHHHHH-- T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHCCCEEEEEC-------CCCCHHHHHHHHHH-- T ss_conf 885489874889999999755406997799999863555556545421143799965-------88735554689999-- Q ss_pred CCHHHHHHHHCCCCCCE-EEECCCCCCCCCCCEEEEEE Q ss_conf 20122566410245747-99718322344123069999 Q gi|254780401|r 121 SDRKIGVQMLLQEGVDI-IIMDDGFHSADLQADFSLIV 157 (338) Q Consensus 121 ~~R~~~~~~~~~~~~di-iIlDDGfQh~~l~rdl~Ivl 157 (338) =..-+++....+-|| +++||=-.|-.-.|.+...+ T Consensus 108 --a~tiAEyfr~~G~~Vlli~DslTr~A~A~reis~~~ 143 (281) T 3ice_A 108 --VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 143 (281) T ss_dssp --HHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCS T ss_pred --HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHC T ss_conf --999999999859974134275899999998777624 No 111 >>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454) Probab=74.49 E-value=3.8 Score=21.22 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=23.1 Q ss_pred CCCCCCHHHHHHHHHH-HHCCCCEEEEE Q ss_conf 7888748999999998-52473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAV-IDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l-~~~g~~~~ils 81 (338) .|+|||-++..++-.+ ...|.++..+| T Consensus 22 ~G~GKT~l~l~~~~~~~~~~g~~v~~~s 49 (264) T 2r6a_A 22 PSVGKTAFALNIAQNVATKTNENVAIFS 49 (264) T ss_dssp TTSCHHHHHHHHHHHHHHHSSCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 4540279999999723024798369983 No 112 >>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (A:139-330) Probab=74.48 E-value=1.8 Score=23.47 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=22.8 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..++.+|- -|+|||-+..+|++++.... +..++- T Consensus 34 ~~ili~G~---tGsGKTTll~al~~~~~~~~-~~~~ie 67 (192) T 2pt7_A 34 KNVIVCGG---TGSGKTTYIKSIMEFIPKEE-RIISIE 67 (192) T ss_dssp CCEEEEES---TTSCHHHHHHHGGGGSCTTS-CEEEEE T ss_pred CCEEEEEC---CCCCCHHHHHHHHHHCCCCC-CEEECC T ss_conf 86799950---37982788899876412556-333124 No 113 >>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633) Probab=73.72 E-value=2.9 Score=22.07 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=22.9 Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE Q ss_conf 788874899-999999852473159876 Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338) =|+|||-.+ .++++.+.+.+.++.|++ T Consensus 19 TGSGKT~~~l~~il~~~~~~~~rvLiLa 46 (243) T 2wv9_A 19 PGAGKTRRILPQIIKDAIQKRLRTAVLA 46 (243) T ss_dssp TTTTTTTTHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEH T ss_conf 9885999999999985614699999996 No 114 >>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} (A:93-282) Probab=73.38 E-value=3.2 Score=21.72 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.8 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 0788874899999999852473159876045 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) --|+|||-++-.|+..+..++.++.++..-. T Consensus 14 ~~GsGKST~l~~l~~~~~~~~~~~~~~~~d~ 44 (190) T 2ffh_A 14 LQGSGKTTTAAKLALYYKGKGRRPLLVAADT 44 (190) T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCS T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 7667624579999999984498025874354 No 115 >>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} (A:) Probab=73.34 E-value=6.7 Score=19.46 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.4 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 00788874899999999852473159876045787 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) |=-|-|||-.++=+|=.-.-+|++|.|+ ..-++. T Consensus 35 tG~GKGKTTAAlG~alRA~G~G~rV~ii-QFLKg~ 68 (196) T 1g5t_A 35 TGNGKGKTTAAFGTAARAVGHGKNVGVV-QFIKGT 68 (196) T ss_dssp ESSSSCHHHHHHHHHHHHHHTTCCEEEE-ESSCCS T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEEE-EEEECC T ss_conf 2499872889999999984389879999-986178 No 116 >>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* (A:1-42,A:107-331) Probab=72.55 E-value=4.6 Score=20.62 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.5 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 7888748999999998524731598 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGF 79 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~i 79 (338) -|||||-++..+++.+...+..+.+ T Consensus 68 pGtGKTtla~ala~~l~~~~~~i~i 92 (267) T 2vhj_A 68 GNSGKTPLVHALGEALGGKDKYATV 92 (267) T ss_dssp CSSSHHHHHHHHHHHHHTTSCCEEE T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEE T ss_conf 9987999999999986289993881 No 117 >>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} (A:392-511) Probab=72.21 E-value=3.4 Score=21.57 Aligned_cols=56 Identities=7% Similarity=-0.045 Sum_probs=35.4 Q ss_pred CCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC-CC---CCCCHHHH Q ss_conf 7888748999999998524--7315987604578777755871456788770421233220576-34---65201225 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK--NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-TI---VTSDRKIG 126 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~--g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-v~---V~~~R~~~ 126 (338) =|+|||-++.+|.+.|.+. |..+-+| - ...-..++.-+-+|++.+- |+ +++.+... T Consensus 13 sgsGKsTlA~aL~~~L~~~~~G~~~~~L-D---------------GdniRr~~~vA~ll~~~G~iviva~isP~ei~~ 74 (120) T 1g8f_A 13 LTVSREQLSIALLSTFLQFGGGRYYKIF-E---------------HNNKTELLSLIQDFIGSGSGLIIPDQWEDDKDS 74 (120) T ss_dssp CCSCHHHHHHHHHHHHTTSCSCCCEEEC-C---------------CTTCHHHHTTHHHHHHTTCEEEESSCCCGGGGG T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC-C---------------CCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHH T ss_conf 9988899999999999860685588731-5---------------587433789999997359637964898761110 No 118 >>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (A:1-196) Probab=72.01 E-value=2 Score=23.17 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=21.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCC Q ss_conf 8998230007888748999999998524731 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338) |+-.| -+|||||.++..+++.+...... T Consensus 48 vli~G---ppG~GKT~la~~ia~~~~~~~~~ 75 (196) T 2qby_A 48 IFIYG---LTGTGKTAVVKFVLSKLHKKFLG 75 (196) T ss_dssp EEEEE---CTTSSHHHHHHHHHHHHHHHTCS T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCC T ss_conf 89989---99781999999999986520389 No 119 >>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1} (A:) Probab=71.84 E-value=2.7 Score=22.28 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=31.2 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 899823000788874899999999852473159876045787 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) |+.+|- -|+|||-++..|++.|...++.+..+.+.+.+. T Consensus 16 I~i~G~---~GsGKTT~a~~La~~l~~~~~~~~~~~~~~~~~ 54 (186) T 2yvu_A 16 VWLTGL---PGSGKTTIATRLADLLQKEGYRVEVLDGDWART 54 (186) T ss_dssp EEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHT T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 997899---999999999999999713178703667888765 No 120 >>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A* (A:) Probab=71.60 E-value=4.5 Score=20.72 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 788874899999999852473159876045787 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) -|+|||-++..|++.+...+..+.....-++.. T Consensus 9 ~GsGKsTla~~L~~~~~~~~~~~~~~~~~~~~~ 41 (197) T 2z0h_A 9 DGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE 41 (197) T ss_dssp TTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSH T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 879999999999999997799889986899974 No 121 >>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD PG4; 2.27A {Thermotoga maritima} (A:1-109,A:196-228) Probab=71.33 E-value=3.7 Score=21.31 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.7 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 00788874899999999852473159876045787 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) .+|+||+. =.++++.|.++|+++..++|-.... T Consensus 17 I~GAtG~i--Gr~iv~~Ll~~G~~Vvaivr~~~~~ 49 (142) T 1vm6_A 17 IVGYSGRM--GQEIQKVFSEKGHELVLKVDVNGVE 49 (142) T ss_dssp EETTTSHH--HHHHHHHHHHTTCEEEEEEETTEEE T ss_pred EECCCCHH--HHHHHHHHHCCCCEEEEEECCCCHH T ss_conf 99998979--9999999966999599997888377 No 122 >>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379) Probab=71.25 E-value=4.6 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.0 Q ss_pred CCCCCCH-HHHHHHHHHHHCCCCEEEEE Q ss_conf 7888748-99999999852473159876 Q gi|254780401|r 55 GGTGKTP-TALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP-~v~~l~~~l~~~g~~~~ils 81 (338) =|||||= +..++++.+.+.|.++.+|+ T Consensus 11 TGSGKT~~~~~~ii~~~~~~g~rvLvLa 38 (225) T 2v6i_A 11 PGAGKTRRVLPQLVREAVKKRLRTVILA 38 (225) T ss_dssp TTSCTTTTHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEH T ss_conf 9878889999999998762798599993 No 123 >>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} (A:1-167) Probab=71.24 E-value=2.3 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=20.7 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 88988998230007888748999999998524 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .+-.++-.|= -|||||-++.++|+.+... T Consensus 37 ~~~~iLl~Gp---pGtGKT~lA~alA~~~~~~ 65 (167) T 1hqc_A 37 PLEHLLLFGP---PGLGKTTLAHVIAHELGVN 65 (167) T ss_dssp CCCCCEEECC---TTCCCHHHHHHHHHHHTCC T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 8875998898---9988999999999986889 No 124 >>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032} (A:1-194) Probab=71.21 E-value=4.6 Score=20.63 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=20.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 78887489999999985247315987 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) -|||||=++..++..|...+....++ T Consensus 31 ~GtGKT~lA~~la~~l~~~~~~~~~~ 56 (194) T 3b85_A 31 AGSGKTYLAXAKAVQALQSKQVSRII 56 (194) T ss_dssp TTSSTTHHHHHHHHHHHHTTSCSEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 99739999999999876314510156 No 125 >>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A (A:1-300) Probab=71.19 E-value=5.6 Score=20.05 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=21.0 Q ss_pred CCCCCHHHHHHHHHHHHHCCC-EEEECHHHHHHCC Q ss_conf 234898999999997564798-7998546634382 Q gi|254780401|r 257 HAHLSDKKIAYLLDQAQQKGL-ILVTTAKDAMRLH 290 (338) Q Consensus 257 Hh~ys~~dl~~i~~~a~~~~~-~iiTTEKD~VKL~ 290 (338) +.--+++.+..+++.|..... .|.-=|=|++... T Consensus 208 ~~G~~~~~i~~~F~~a~~~~p~iif~de~d~~~~~ 242 (300) T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 242 (300) T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC T ss_conf 32449999999999998708752111023343115 No 126 >>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:347-549) Probab=71.13 E-value=7.5 Score=19.11 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=15.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|+|||=+....+....+++.++.|++ T Consensus 52 TGsGKT~~~~l~~~~~~~~~~~~lil~ 78 (203) T 1gm5_A 52 VGSGKTVVAQLAILDNYEAGFQTAFMV 78 (203) T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEEC T ss_pred CCCCCEEEEHHHHHHHHHCCCCEEEEE T ss_conf 898670522844899996389789993 No 127 >>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} (A:) Probab=71.12 E-value=7.5 Score=19.11 Aligned_cols=137 Identities=15% Similarity=0.060 Sum_probs=66.8 Q ss_pred CCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC------ Q ss_conf 89889-98230007888748999999998524731598760457877775587145678877042123322057------ Q gi|254780401|r 43 PIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA------ 115 (338) Q Consensus 43 ~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~------ 115 (338) +.++| .||. -|+|||-++-.|++.+...|.++++++..-+.......... .-.+-|.......+ T Consensus 54 ~~~~V~ivG~---pnaGKSTLln~L~~~~~~~~~~~~~v~~~~~~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~d 124 (337) T 2qm8_A 54 RAIRVGITGV---PGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILG------DKTRXARLAIDRNAFIRPSP 124 (337) T ss_dssp CSEEEEEECC---TTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSC------CGGGSTTGGGCTTEEEECCC T ss_pred CCEEEECCCC---CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH------HHHHHHHHHCCCCEEECCCC T ss_conf 8249962289---99889999999999985189831111035664120323750------56789987424541331552 Q ss_pred CCCCCCCHHH----HHHHHCCCCCCEEEE--C--CC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH Q ss_conf 6346520122----566410245747997--1--83-2234412306999961843356655376136521002556651 Q gi|254780401|r 116 VTIVTSDRKI----GVQMLLQEGVDIIIM--D--DG-FHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV 186 (338) Q Consensus 116 pv~V~~~R~~----~~~~~~~~~~diiIl--D--DG-fQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra 186 (338) ...++..... +...+.....|.+++ + ++ ........+...++.+.......-. .. .. ...++ T Consensus 125 ~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~-~~-~~~~~ 195 (337) T 2qm8_A 125 SSGTLGGVAAKTRETXLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLXLPGAGDELQG-------IK-KG-IFELA 195 (337) T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------------CC-TT-HHHHC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCHHCCCCEEEEEEECCCCCCHHHH-------HC-HH-HHHHH T ss_conf 23542211676799998751179864888533343031010367628999832554234666-------22-05-75420 Q ss_pred HHHHHCCCCHH Q ss_conf 45442044124 Q gi|254780401|r 187 DAILYVGNKKN 197 (338) Q Consensus 187 d~vi~~~~~~~ 197 (338) +.+++++.+.- T Consensus 196 ~~i~~nK~D~~ 206 (337) T 2qm8_A 196 DXIAVNKADDG 206 (337) T ss_dssp SEEEEECCSTT T ss_pred HEEEEECCCCC T ss_conf 03577410255 No 128 >>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} (A:1-335) Probab=71.03 E-value=1.7 Score=23.69 Aligned_cols=40 Identities=30% Similarity=0.308 Sum_probs=24.9 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE------EEECCCCC Q ss_conf 88988998230007888748999999998524731598------76045787 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF------LSRGYGRK 87 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i------lsRGYg~~ 87 (338) .+--++-.|- -|||||-++.+||+.+.. .... .+.||+++ T Consensus 49 ~~~~~Ll~GP---pGtGKT~lakalA~~l~~---~~~~i~~s~~~~~g~~~~ 94 (335) T 1g41_A 49 TPKNILMIGP---TGVGKTEIARRLAKLANA---PFIKVEATKFTEVGYVGK 94 (335) T ss_dssp CCCCEEEECC---TTSSHHHHHHHHHHHTTC---CEEEEEGGGGC----CCC T ss_pred CCCCEEEECC---CCCCHHHHHHHHHHHHCC---CEEEEECCCEEEEEECCC T ss_conf 6552799899---998899999999998589---879850561033000257 No 129 >>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190) Probab=70.64 E-value=4.6 Score=20.64 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=54.0 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC--------CCCE-EEECCCCCHHHHC-----CHHHHHHH--C--C Q ss_conf 07888748999999998524731598760457877--------7755-8714567887704-----21233220--5--7 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS--------RISF-RVDLEKHSAYDVG-----DEPLLLAR--R--A 115 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~--------~~~~-~v~~~~~~~~~vG-----DEp~lla~--~--~ 115 (338) .||| =-|=+.-+.+.|+++|++++|+|.+..... ...+ .+. ++.+++ -|.+..+. . . T Consensus 13 ~~~~-l~pgv~e~L~~Lk~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~----~~~~~~~~Kp~~~~~~~a~~~l~~~ 87 (124) T 2fi1_A 13 LGGT-LFEGVSDLLEDISNQGGRHFLVSHRNDQVLEILEKTSIAAYFTEVV----TSSSGFKRKPNPESMLYLREKYQIS 87 (124) T ss_dssp TBTT-BCTTHHHHHHHHHHTTCEEEEECSSCTHHHHHHHHTTCGGGEEEEE----CGGGCCCCTTSCHHHHHHHHHTTCS T ss_pred CCCC-CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 8997-5620699986400120121202322222222223333222222222----2222344563299999999975999 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC Q ss_conf 63465201225664102457479971832234 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA 147 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~ 147 (338) ++++-.|+...++.+.+.+...|...+|.+.. T Consensus 88 ~~l~VgD~~~Di~aA~~aGi~~i~v~~g~~~~ 119 (124) T 2fi1_A 88 SGLVIGDRPIDIEAGQAAGLDTHLFTSIVNLR 119 (124) T ss_dssp SEEEEESSHHHHHHHHHTTCEEEECSCHHHHH T ss_pred CEEEECCCHHHHHHHHHCCCEEEEECCCCCHH T ss_conf 76999079999999998599799999988737 No 130 >>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443) Probab=70.56 E-value=1.9 Score=23.44 Aligned_cols=39 Identities=21% Similarity=0.059 Sum_probs=29.2 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 988998230007888748999999998524731598760457 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) -|++..|- =|||||-+....+..|...|..+....++.. T Consensus 17 ~~~lI~G~---pGTGKT~tl~~~i~~ll~~~~~~~~~~~~~~ 55 (243) T 1w36_B 17 GERLIEAS---AGTGKTFTIAALYLRLLLGLGGSAAFPRPLT 55 (243) T ss_dssp SCEEEECC---TTSCHHHHHHHHHHHHHTTCSSSSSCSSCCC T ss_pred CCEEEEEE---CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 99799993---7304889999999999841764433457999 No 131 >>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (B:1-196) Probab=70.47 E-value=2.3 Score=22.77 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=20.7 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 988998230007888748999999998524 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) -.++-.| -+|||||-++.++++.+... T Consensus 46 ~~ili~G---ppGtGKT~la~~i~~~~~~~ 72 (196) T 2qby_B 46 FSNLFLG---LTGTGKTFVSKYIFNEIEEV 72 (196) T ss_dssp CEEEEEE---CTTSSHHHHHHHHHHHHHHH T ss_pred CCEEEEC---CCCCCHHHHHHHHHHHHHHH T ss_conf 8658987---99884999999999997531 No 132 >>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306) Probab=70.43 E-value=5.1 Score=20.34 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=66.5 Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCC-CCCCCCH Q ss_conf 823000788--874899999999852473159876045787777558714567--88770421233220576-3465201 Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAV-TIVTSDR 123 (338) Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~p-v~V~~~R 123 (338) ||=+|.||- |=-..+..+++.+..+|+++.-+.+||.+-..+.+..-+..+ .....|--.+ -..+++ .---.++ T Consensus 5 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~L-gtsR~~~~~~~~~~ 83 (185) T 1pfk_A 5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFL-GSARFPEFRDENIR 83 (185) T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTT-CCCCCGGGGSHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEE-CCCCCCCCCCHHHH T ss_conf 99986588867789999999999987799999991667887279868689999977985799722-47788866657788 Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCCCC--CEEEEEEECC Q ss_conf 22566410245747997---1832234412--3069999618 Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSADLQ--ADFSLIVVNS 160 (338) Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~l~--rdl~Ivl~d~ 160 (338) .++++.+.+.+.|.+|. ||-++--..- -++.++.+.. T Consensus 84 ~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vvgiPk 125 (185) T 1pfk_A 84 AVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPG 125 (185) T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 899999997699889993693689999997643674331211 No 133 >>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} (A:) Probab=70.36 E-value=2.1 Score=23.06 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=21.7 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 98899823000788874899999999852473 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338) -.++-+|= =|||||-++..||+.|....+ T Consensus 44 ~~iLl~GP---pGtGKTtla~ala~~l~~~~~ 72 (187) T 2p65_A 44 NNPILLGD---PGVGKTAIVEGLAIKIVQGDV 72 (187) T ss_dssp CEEEEESC---GGGCHHHHHHHHHHHHHTTCS T ss_pred CCEEEECC---CCCCHHHHHHHHHHHHHHCCC T ss_conf 78068647---640147999999999982899 No 134 >>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} (A:) Probab=70.02 E-value=1.7 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=28.1 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 78887489999999985247315987604578 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) -|+|||-++..|++.|...++.+..+.|.... T Consensus 9 ~GsGKST~a~~L~~~l~~~~i~~~~~~~~~~~ 40 (214) T 1gtv_A 9 DGAGKRTLVEKLSGAFRAAGRSVATLAFPRYG 40 (214) T ss_dssp EEEEHHHHHHHHHHHHHEEEEEEEEEESSEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 87889999999999998789978998469999 No 135 >>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis} (A:) Probab=70.01 E-value=2.9 Score=22.07 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=32.0 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 8899823000788874899999999852473159876045787 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) -|...|+. |+|||-++..|++.|...+..+..+.|-+... T Consensus 23 ~I~i~G~~---GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~ 62 (223) T 3ld9_A 23 FITFEGID---GSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223) T ss_dssp EEEEECST---TSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 89988998---89999999999999886389854997408998 No 136 >>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:261-403) Probab=69.96 E-value=3.6 Score=21.37 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=26.3 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 9889982300078887489999999985247315987 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) -++|. ..||||=||+...+-..+.+.+-++..+ T Consensus 7 ~~lv~----iagG~GItP~~s~l~~l~~~~~~~v~l~ 39 (143) T 1cqx_A 7 TPIVL----ISGGVGLTPMVSMLKVALQAPPRQVVFV 39 (143) T ss_dssp SCEEE----EESSCCHHHHHHHHHHHTCSSCCCEEEE T ss_pred CEEEE----EEECCCCCCHHHHHHHHHHCCCCHHHHC T ss_conf 31699----9925875227899998876044302312 No 137 >>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} (A:1-192) Probab=69.62 E-value=4.2 Score=20.93 Aligned_cols=28 Identities=32% Similarity=0.297 Sum_probs=20.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCC Q ss_conf 8998230007888748999999998524731 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338) ++-.|- .|||||-++.++++.+...-.. T Consensus 47 ili~Gp---pGtGKT~~a~~ia~~l~~~~~~ 74 (192) T 1fnn_A 47 ATLLGR---PGTGKTVTLRKLWELYKDKTTA 74 (192) T ss_dssp EEEECC---TTSSHHHHHHHHHHHHTTSCCC T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHHCCC T ss_conf 799859---9881999999999997763688 No 138 >>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} (A:88-289) Probab=68.76 E-value=7 Score=19.33 Aligned_cols=125 Identities=7% Similarity=-0.055 Sum_probs=59.1 Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC----HHHHHH Q ss_conf 07888748999999998524-7315987604578777755871456788770421233220576346520----122566 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD----RKIGVQ 128 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~----R~~~~~ 128 (338) -=|||||=+.+..+...... +.+..++. +......+.=+|..-......+.+... ...... T Consensus 49 ~tGsGKT~~~~~~~~~~~~~~~~~~~ii~--------------p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (202) T 2oca_A 49 PTSAGRSLIQALLARYYLENYEGKILIIV--------------PTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKY 114 (202) T ss_dssp CSTTTHHHHHHHHHHHHHHHCSSEEEEEE--------------SSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGG T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEC--------------CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEC T ss_conf 55502568999999987624786599972--------------7577999999999875235422203542665200002 Q ss_pred HHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHH Q ss_conf 4102457479971832234412306999961843356655376136521002556651454420441245 Q gi|254780401|r 129 MLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNV 198 (338) Q Consensus 129 ~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~ 198 (338) .-........+.+...+......+++.+++|-..-+ -.+.+++-+....+....+..|+.+.+. T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~DEah~~------~~~~~~~~~~~~~~~~~~l~lTATp~~~ 178 (202) T 2oca_A 115 KNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLA------TGKSISSIISGLNNCMFKFGLSGSLRDG 178 (202) T ss_dssp CTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGC------CHHHHHHHGGGCTTCCEEEEEESCGGGC T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCEEECCCCC------CCCCHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 557619998332100123553024452000000112------3210100112104321001100233577 No 139 >>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} (A:) Probab=68.45 E-value=0.81 Score=26.00 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=28.8 Q ss_pred CCCEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 8988998-230007888748999999998524731598760 Q gi|254780401|r 43 PIPVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 43 ~~pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) .-++|+| |.. |+|||-++..|++.|...++.+..+.+ T Consensus 13 ~~~~I~i~G~~---GsGKSTla~~L~~~l~~~~~~~~~~~~ 50 (223) T 3hdt_A 13 KNLIITIEREY---GSGGRIVGKKLAEELGIHFYDDDILKL 50 (223) T ss_dssp CCEEEEEEECT---TSCHHHHHHHHHHHHTCEEECHHHHHH T ss_pred CCEEEEECCCC---CCCHHHHHHHHHHHHCCCEECCHHHHH T ss_conf 99799845899---899799999999991997886189999 No 140 >>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:1-160) Probab=68.33 E-value=1.7 Score=23.77 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=24.0 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 9889982300078887489999999985247315 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338) -+++..|. -|||||.++..+|+.+......+ T Consensus 39 ~~~Ll~Gp---pGtGKT~~a~~la~~l~~~~~~~ 69 (160) T 2chq_A 39 PHLLFSGP---PGTGKTATAIALARDLFGENWRD 69 (160) T ss_dssp CCEEEESS---SSSSHHHHHHHHHHHHHTTCHHH T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCCCCCC T ss_conf 77998897---99999999999998725454565 No 141 >>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} (A:1-67,A:132-252) Probab=68.13 E-value=5.9 Score=19.89 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=25.1 Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCC-----CCEEEEE Q ss_conf 9982300078887489999999985247-----3159876 Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKN-----LKPGFLS 81 (338) Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g-----~~~~ils 81 (338) +.||=.-.-|+|||-++..|++.|...+ .+++++| T Consensus 23 ~~i~i~G~~gsGKst~a~~l~~~l~~~~~~~~~~~~~~~~ 62 (188) T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILS 62 (188) T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEE T ss_conf 9999889897788999999999966355555665404872 No 142 >>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:184-444) Probab=68.12 E-value=4.3 Score=20.84 Aligned_cols=27 Identities=33% Similarity=0.257 Sum_probs=25.0 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|+|||-++..++..+...+.++..++ T Consensus 23 ~G~GKT~l~~~l~~~~~~~~~~~~~~~ 49 (261) T 3bgw_A 23 PSMGKTAFALKQAKNMSDNDDVVNLHS 49 (261) T ss_dssp SSSSHHHHHHHHHHHHHHTTCEEEEEC T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 665148999865577641588068751 No 143 >>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315) Probab=68.10 E-value=4.9 Score=20.47 Aligned_cols=28 Identities=32% Similarity=0.222 Sum_probs=25.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) =|+|||-++..++......|.++..+|- T Consensus 28 ~G~GKT~l~~~~~~~~~~~g~~~~~~~~ 55 (266) T 3bh0_A 28 PSMGKTAFALKQAKNMSDNDDVVNLHSL 55 (266) T ss_dssp TTSSHHHHHHHHHHHHHTTTCEEEEEES T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 3441489999999987501472589622 No 144 >>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A (A:146-408) Probab=67.95 E-value=4.9 Score=20.45 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.0 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 8887489999999985247315987604 Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |||||-+...++..+...+.++.+++.. T Consensus 60 GTGKT~ti~~ii~~ll~~~~~~~~~~~~ 87 (263) T 2gk6_A 60 GTGKTVTSATIVYHLARQGNGPVLVCAP 87 (263) T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEES T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 9888999999999987520212156506 No 145 >>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:170-361) Probab=67.90 E-value=5.2 Score=20.27 Aligned_cols=22 Identities=32% Similarity=0.349 Sum_probs=18.1 Q ss_pred ECCCCCCHHHHHHHHHHHHCCC Q ss_conf 0788874899999999852473 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNL 75 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~ 75 (338) .-|+|||=++++++..+...+. T Consensus 37 ~tGsGKT~~~~~~~~~~~~~~~ 58 (192) T 3h1t_A 37 ATGTGKTVVAFQISWKLWSARW 58 (192) T ss_dssp CTTSCHHHHHHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHHHHHHHHH T ss_conf 7898415899999999998633 No 146 >>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:176-323,A:482-562) Probab=67.89 E-value=4.7 Score=20.59 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=22.1 Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE Q ss_conf 788874899-999999852473159876 Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338) =|+|||=.+ ..+++.+.+.|.++.||. T Consensus 20 TGsGKT~~~l~~i~~~~~~~~~rvLiLa 47 (229) T 2vbc_A 20 PGAGKTKRILPSIVREALKRRLRTLILA 47 (229) T ss_dssp TTTCCTTTHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEH T ss_conf 9879989999999997255799999985 No 147 >>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} (A:) Probab=67.79 E-value=3.2 Score=21.72 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=39.1 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC-----CCCCC----CCCCCEEEEEEECCCC Q ss_conf 763465201225664102457479971-----83223----4412306999961843 Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD-----DGFHS----ADLQADFSLIVVNSHR 162 (338) Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD-----DGfQh----~~l~rdl~Ivl~d~~~ 162 (338) +.|..+.+-.+|.+.+.+..+|+||+| ||++- ++..++.-|+++.+.. T Consensus 29 ~~v~~a~~g~eAl~~~~~~~~dliilD~mp~~dG~e~~~~ir~~~~~~pii~lT~~~ 85 (142) T 2qxy_A 29 FNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142) T ss_dssp CEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESCC T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 999997657999999983188899723577504999999999978999789997458 No 148 >>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A (A:322-584) Probab=67.74 E-value=4.9 Score=20.45 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.0 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 8887489999999985247315987604 Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |||||-+...++..+...+.++.+++.. T Consensus 60 GTGKT~ti~~ii~~ll~~~~~~~~~~~~ 87 (263) T 2wjy_A 60 GTGKTVTSATIVYHLARQGNGPVLVCAP 87 (263) T ss_dssp TSCHHHHHHHHHHHHHTTCSSCEEEEES T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 9868899999999998617986899946 No 149 >>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} (B:) Probab=67.53 E-value=0.37 Score=28.40 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.5 Q ss_pred CEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf 88998-23000788874899999999852473159876045787777 Q gi|254780401|r 45 PVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI 90 (338) Q Consensus 45 pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~ 90 (338) .+|+| |+. |+|||-++..|++.|...++.+..+.|.++..... T Consensus 25 ~~I~i~G~~---GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 68 (263) T 1p5z_B 25 KKISIEGNI---AAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQ 68 (263) T ss_dssp EEEEEECST---TSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC- T ss_pred CEEEEECCC---CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH T ss_conf 989998988---88699999999999742798576631038864177 No 150 >>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A* (A:125-372) Probab=67.47 E-value=8.1 Score=18.88 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=19.2 Q ss_pred CCCCCCHHHHHHHHHHHHC-CCCEEEE Q ss_conf 7888748999999998524-7315987 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK-NLKPGFL 80 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~-g~~~~il 80 (338) -|||||-+..+|++++-+. +..+.++ T Consensus 21 tGsGKTtll~al~~~~~~~~~~~ii~~ 47 (248) T 2ewv_A 21 TGSGKSTTIASMIDYINQTKSYHIITI 47 (248) T ss_dssp SSSSHHHHHHHHHHHHHHHSCCEEEEE T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEC T ss_conf 877730199999998760345441103 No 151 >>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:91-230) Probab=67.45 E-value=8.9 Score=18.59 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=36.2 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCC-------------CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH Q ss_conf 86389874155357899988740100001-------------2214332348989999999975647987998546634 Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLGALIEQ-------------CYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAM 287 (338) Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g~~i~~-------------~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~V 287 (338) +++++++. .+.+.+.|++.|+.+.. ......+..|+-.++.+......+.++++|+|-.|.+ T Consensus 19 ~~~v~~iG----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~aVv~g~~~~~~~~~l~~a~~~l~~~~~~~i~tN~D~~ 93 (140) T 2oyc_A 19 PGAVFVLG----GEGLRAELRAAGLRLAGDPSAGDGAAPRVRAVLVGYDEHFSFAKLREACAHLRDPECLLVATDRDPW 93 (140) T ss_dssp CCEEEEES----CHHHHHHHHHTTCEETTSCCCC---CCCEEEEEECCCTTCCHHHHHHHHHHHTSTTSEEEESCCCCE T ss_pred CCEEEEEC----CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC T ss_conf 62588854----7337899998376523663554333210132031465334677777899987425652242036532 No 152 >>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} (A:) Probab=67.12 E-value=2.1 Score=22.99 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=27.0 Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 982300078887489999999985247315987604 Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) .-|+. |+|||-++..|++.|..+|..+.+++-- T Consensus 12 ieG~~---GsGKTTl~~~L~~~l~~~~~~~~~~e~~ 44 (334) T 1p6x_A 12 LDGVY---GIGKSTTGRVMASAASGGSPTLYFPEPM 44 (334) T ss_dssp EECST---TSSHHHHHHHHHSGGGCSSCEEEECCCH T ss_pred EECCC---CCCHHHHHHHHHHHHCCCCCEEEEECCH T ss_conf 98887---7889999999999866799779982763 No 153 >>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} (A:) Probab=66.79 E-value=4.4 Score=20.77 Aligned_cols=94 Identities=13% Similarity=-0.017 Sum_probs=42.5 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCEEEECCCCCHHHHCCHH----HHHHHCCC------CCCCC Q ss_conf 07888748999999998524731598760--45787777558714567887704212----33220576------34652 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR--GYGRKSRISFRVDLEKHSAYDVGDEP----LLLARRAV------TIVTS 121 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR--GYg~~~~~~~~v~~~~~~~~~vGDEp----~lla~~~p------v~V~~ 121 (338) --|+|||-+.-.|+..+....=.+-+--. .+.+...+......... ....+... .-+.+... ..-+. T Consensus 8 pnGaGKSTLlk~i~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (178) T 1ye8_A 8 EPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK-KKIFSSKFFTSKKLVGSYGVNVQYFEELAIP 86 (178) T ss_dssp CTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCC-EEEEEETTCCCSSEETTEEECHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 998089999999983088886269989823455645425202443032-3566552023445666641576255642101 Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCCC Q ss_conf 012256641024574799718322344 Q gi|254780401|r 122 DRKIGVQMLLQEGVDIIIMDDGFHSAD 148 (338) Q Consensus 122 ~R~~~~~~~~~~~~diiIlDDGfQh~~ 148 (338) .++.+...+.-.+++++|||--..+.- T Consensus 87 k~R~~ia~al~~~P~iLiLDEPt~~lD 113 (178) T 1ye8_A 87 ILERAYREAKKDRRKVIIIDEIGKXEL 113 (178) T ss_dssp HHHHHHHHHHHCTTCEEEECCCSTTGG T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 278999999724998899834785322 No 154 >>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:1-145,A:303-387) Probab=66.77 E-value=5.2 Score=20.29 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.4 Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE Q ss_conf 788874899-999999852473159876 Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338) =|+|||=.+ .++++...+++.++.++. T Consensus 17 TGsGKT~~~l~~i~~~~~~~~~rvLvL~ 44 (230) T 1yks_A 17 PGAGKTRRFLPQILAECARRRLRTLVLA 44 (230) T ss_dssp TTSSTTTTHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEH T ss_conf 9974989999999999860799299984 No 155 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1405-1637) Probab=66.09 E-value=5 Score=20.38 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++.++.....+|.++..++ T Consensus 32 pGsGKT~l~lq~~~~~~~~g~~~~yi~ 58 (233) T 3cmu_A 32 ESSGKTTLTLQVIAAAQREGKTCAFID 58 (233) T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 878832699999999986388479941 No 156 >>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283) Probab=66.00 E-value=6 Score=19.81 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=23.5 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCC----CCEEEEE Q ss_conf 9889982300078887489999999985247----3159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKN----LKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g----~~~~ils 81 (338) -+++.+| .-|||||-+....+.++...+ .++.+++ T Consensus 23 ~~~lV~g---~aGsGKT~~~~~~i~~ll~~~~~~~~~il~~t 61 (201) T 2is6_A 23 SNLLVLA---GAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 (201) T ss_dssp SCEEEEC---CTTSSHHHHHHHHHHHHHHTSCCCGGGEEEEE T ss_pred CCEEEEE---ECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 9989998---28659999999999999981999934099981 No 157 >>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A (W:96-285) Probab=65.90 E-value=6.1 Score=19.76 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=25.8 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 007888748999999998524731598760 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) =.=|+|||-+...|+..++..+.++.+... T Consensus 13 GpnG~GKSTll~~l~gll~~~~g~v~~~g~ 42 (190) T 2j37_W 13 GLQGSGKTTTCSKLAYYYQRKGWKTCLICA 42 (190) T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEEC T ss_conf 575567532599999999741354311201 No 158 >>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:) Probab=65.85 E-value=5.6 Score=20.03 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=21.3 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 74899999999852473159876 Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ils 81 (338) .||.++||+..|+++|+.|.|.+ T Consensus 21 q~p~~lyl~~~Lk~~G~~v~Va~ 43 (157) T 1kjn_A 21 QIPLAIYTSHKLKKKGFRVTVTA 43 (157) T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCEEEEC T ss_conf 34799999999986697359965 No 159 >>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} (A:64-267) Probab=65.85 E-value=4.5 Score=20.68 Aligned_cols=67 Identities=18% Similarity=-0.119 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE Q ss_conf 9999999974046433889889982300078887489999999985247315987604578777755871 Q gi|254780401|r 26 YSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVD 95 (338) Q Consensus 26 y~~~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~ 95 (338) ..++..+.+-+..+.....-++..|. ||||||-++..|++.+-..+...---++.+-....+...+. T Consensus 24 ~~~~~~l~~~l~~~~~~~~~~~l~G~---~gtGKStl~~~l~~l~g~~~~~~~~~~~~~~~~l~gk~i~i 90 (204) T 1u0j_A 24 QYAASVFLGWATKKFGKRNTIWLFGP---ATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIW 90 (204) T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECS---TTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEE T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECC---CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 99999999997389977459999889---98878999999999807442013557887663236987999 No 160 >>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} (A:) Probab=65.81 E-value=5.9 Score=19.88 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=27.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 0007888748999999998524731598760457877 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338) +.+||||- +=.+|++.|.++|++|..++|.-.... T Consensus 8 lItGatG~--iG~~l~~~L~~~g~~V~~~~R~~~~~~ 42 (227) T 3dhn_A 8 VLIGASGF--VGSALLNEALNRGFEVTAVVRHPEKIK 42 (227) T ss_dssp EEETCCHH--HHHHHHHHHHTTTCEEEEECSCGGGCC T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHCC T ss_conf 99889988--999999999978498999988836533 No 161 >>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} (A:1-171,A:340-364) Probab=65.32 E-value=9.8 Score=18.31 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 788874899999999852473159876045787 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) +..|-+-.+..|++.|.++|+.|.+++..++.. T Consensus 15 ~~gG~~~~~~~la~~L~~~G~eV~v~~~~~~~~ 47 (196) T 1f0k_A 15 GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME 47 (196) T ss_dssp SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH T ss_conf 846879999999999997889799997887065 No 162 >>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} (A:) Probab=65.02 E-value=6.1 Score=19.74 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=30.0 Q ss_pred CCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 98899-82300078887489999999985247315987604578 Q gi|254780401|r 44 IPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 44 ~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) -+||+ -|+ -|+|||-++-.|++.|...+.....+..=+.. T Consensus 22 ~~iI~I~G~---~GsGKtTla~~L~~~l~~~~~~~~~~~~~~~~ 62 (201) T 1rz3_A 22 RLVLGIDGL---SRSGKTTLANQLSQTLREQGISVCVFHXDDHI 62 (201) T ss_dssp SEEEEEEEC---TTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC T ss_pred CEEEEEECC---CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC T ss_conf 889997798---73799999999999836158851230231112 No 163 >>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} (A:) Probab=65.02 E-value=3 Score=21.91 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=23.0 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC Q ss_conf 889889982300078887489999999985247 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338) .+-.++-+|- .|||||-++.+||+.|.... T Consensus 42 ~~~~~Ll~Gp---pGtGKT~~A~~lA~~l~~~~ 71 (195) T 1jbk_A 42 TKNNPVLIGE---PGVGKTAIVEGLAQRIINGE 71 (195) T ss_dssp SSCEEEEECC---TTSCHHHHHHHHHHHHHHTC T ss_pred CCCCCEEEEC---CCCCCHHHHHHHHHHHHHCC T ss_conf 8899468607---98782899999999998079 No 164 >>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* (A:) Probab=64.20 E-value=5.9 Score=19.89 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.1 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 788874899999999852473159876045787 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) =|+|||-++..|++.|....+....+.+...+. T Consensus 14 ~GsGKTTla~~La~~l~~~~~~~~~~~~~~~~~ 46 (179) T 2pez_A 14 SGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHC T ss_conf 999999999999999723698742202677630 No 165 >>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} (A:82-312) Probab=64.10 E-value=4.1 Score=21.00 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=31.2 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 38898899823000788874899999999852473159876 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..+.|||.| +|--|||-++-+|+..|+..|++++..+ T Consensus 16 ~~~~~vI~V----tGT~GKTtt~~~l~~iL~~~g~~~~~~~ 52 (231) T 1gg4_A 16 QVPARVVAL----TGSSGKTSVKEXTAAILSQCGNTLYTAG 52 (231) T ss_dssp HSCCEEEEE----ECSSCHHHHHHHHHHHHTTTSCEEECCT T ss_pred CCCCCEEEE----EECCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 898608999----8069963689999976776402440677 No 166 >>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A (A:1-255) Probab=63.96 E-value=2.9 Score=22.10 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=25.9 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 338898899823000788874899999999852473159876 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..+|--|+-+|.= |||||-++.+||+.+.. ....++ T Consensus 48 ~~~~~~iLl~GPp---GtGKT~la~alA~~l~~---~~~~i~ 83 (255) T 3hws_A 48 ELGKSNILLIGPT---GSGKTLLAETLARLLDV---PFTMAD 83 (255) T ss_dssp CCCCCCEEEECCT---TSSHHHHHHHHHHHTTC---CEEEEE T ss_pred CCCCCCEEEECCC---CCCHHHHHHHHHHHHHH---HHHHHH T ss_conf 5676537998999---88899999999999775---766664 No 167 >>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} (A:1-200) Probab=63.50 E-value=3.8 Score=21.19 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=23.0 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCC Q ss_conf 988998230007888748999999998524731 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338) -.|+.+|- .|||||-++.++++.+...... T Consensus 45 ~~ili~Gp---~G~GKTtla~~la~~l~~~~~~ 74 (200) T 2v1u_A 45 SNALLYGL---TGTGKTAVARLVLRRLEARASS 74 (200) T ss_dssp CCEEECBC---TTSSHHHHHHHHHHHHHHHHHH T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHHHHHCC T ss_conf 84999899---9782999999999986303023 No 168 >>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} (A:1-265) Probab=63.46 E-value=11 Score=18.08 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=32.8 Q ss_pred CCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 89889-9823000788874899999999852473159876045787 Q gi|254780401|r 43 PIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 43 ~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) ..++| .||. -|+|||-++-.|+..+...|.++++++.--++. T Consensus 55 ~~~~v~ivG~---~~aGKSTLln~L~~~~~~~g~~~~~~~~~~~~t 97 (265) T 2p67_A 55 NTLRLGVTGT---PGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (265) T ss_dssp CSEEEEEEEC---TTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-- T ss_pred CCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 8418974489---999899999999999863688247741588754 No 169 >>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* (A:) Probab=63.28 E-value=4 Score=21.03 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=26.1 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |+..|.. |+|||-++..|++.|...+.......+. T Consensus 7 I~i~G~~---GsGKsTl~~~La~~l~~~~~~~~~~~~~ 41 (204) T 2v54_A 7 IVFEGLD---KSGKTTQCMNIMESIPANTIKYLNFPQR 41 (204) T ss_dssp EEEECCT---TSSHHHHHHHHHHTSCGGGEEEEESSCT T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 9998998---8879999999999983789889997999 No 170 >>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} (A:1-329) Probab=63.00 E-value=11 Score=18.02 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=26.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0007888748999999998524731598760457 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) +.+|||| =+=.+|++.|.++|+.+.++.|.=. T Consensus 8 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~ 39 (329) T 1oc2_A 8 IVTGGAG--FIGSNFVHYVYNNHPDVHVTVLDKL 39 (329) T ss_dssp EEETTTS--HHHHHHHHHHHHHCTTCEEEEEECC T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEEECC T ss_conf 8968885--8999999999977997399998488 No 171 >>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} (A:23-279) Probab=62.94 E-value=8.9 Score=18.62 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=20.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 78887489999999985247315987 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) +|+|||-+++.++-.+...+...+.. T Consensus 17 ~G~GKT~l~l~la~~~a~~~~~~g~~ 42 (257) T 1nlf_A 17 GGAGKSMLALQLAAQIAGGPDLLEVG 42 (257) T ss_dssp TTSSHHHHHHHHHHHHHTCCCTTCCC T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99989999999999996599634533 No 172 >>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} (A:) Probab=62.85 E-value=11 Score=18.00 Aligned_cols=63 Identities=8% Similarity=-0.063 Sum_probs=38.1 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHH Q ss_conf 68638987415535789998874010000122143323489899999999756479879985466 Q gi|254780401|r 221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKD 285 (338) Q Consensus 221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD 285 (338) .+....-+.-+.|=-.....+-+... .+.....+...++..|+.+.+.++......++....+ T Consensus 187 ~~~~~~~~i~v~Dva~ai~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~ 249 (292) T 1vl0_A 187 VHDQVGTPTSTVDLARVVLKVIDEKN--YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTE 249 (292) T ss_dssp ESSCEECCEEHHHHHHHHHHHHHHTC--CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECST T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCHH T ss_conf 23654553122122111112222025--6862563688762778999999996998638863377 No 173 >>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} (9:92-330) Probab=62.77 E-value=3.2 Score=21.77 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=48.3 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH-HHCCCCEEEEEEC-CCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC---CC Q ss_conf 8998230007888748999999998-5247315987604-57877775587145678877042123322057634---65 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV-IDKNLKPGFLSRG-YGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI---VT 120 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l-~~~g~~~~ilsRG-Yg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~---V~ 120 (338) |+.+|. -|+|||-.+-.++-.+ ..+|.+++|++.- ++-. ..+-+..+++|.- .++. -. T Consensus 11 v~i~G~---tGsGKST~ipk~~~~~~~~~~~~~~i~~~~prr~~---------a~~~~~~~a~~~~-----~~~~~~~~~ 73 (239) T 2j28_9 11 VLMAGL---QGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA---------AIKQLETLAEQVG-----VDFFPSDVG 73 (239) T ss_dssp EEEECS---SSSSSTTTHHHHHHHHHTSSSCCCCBCCCCCSSSC---------SHHHHHHHHHHTT-----CCCCCCSSC T ss_pred EEEEEE---CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------HHHHHHHHHHHCC-----CCHHHCCCH T ss_conf 999963---28875136999999999847985899964545532---------4367888664135-----432110203 Q ss_pred CCHHH----HHHHHCCCCCCEEEECCCCC--------------CCCCCCEEEEEEECCCC Q ss_conf 20122----56641024574799718322--------------34412306999961843 Q gi|254780401|r 121 SDRKI----GVQMLLQEGVDIIIMDDGFH--------------SADLQADFSLIVVNSHR 162 (338) Q Consensus 121 ~~R~~----~~~~~~~~~~diiIlDDGfQ--------------h~~l~rdl~Ivl~d~~~ 162 (338) ..... ......-.++|+||+|-.-- .....+|..+++.++.. T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~viiDe~her~~~~dlll~l~~~~~~~~~~~~liv~sat~ 133 (239) T 2j28_9 74 QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT 133 (239) T ss_dssp CCTTHHHHHHHHHHHHTTCSCEEEEECCCCSSHHHHHHHHHHHHHHHCCSEEEEEEETTT T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 478999999888998658858997588620447889999999974069816999720346 No 174 >>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:146-331) Probab=62.55 E-value=4.4 Score=20.76 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=22.7 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC Q ss_conf 89889982300078887489999999985247 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338) +--++-+|.= |||||-++.+||+.|.... T Consensus 46 ~~~~Ll~GpP---GtGKT~laralA~~l~~~~ 74 (186) T 1qvr_A 46 KNNPVLIGEP---GVGKTAIVEGLAQRIVKGD 74 (186) T ss_dssp CCCCEEEECT---TSCHHHHHHHHHHHHHHTC T ss_pred CCCCEEECCC---CCCHHHHHHHHHHHHHHCC T ss_conf 8880797788---7415099999999998569 No 175 >>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* (A:) Probab=62.55 E-value=3.7 Score=21.28 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=27.1 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 3889889982300078887489999999985247315987 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) ..+-.++..|.- |||||-++..+|+.+......+... T Consensus 36 ~~~~~ilL~Gpp---GtGKT~la~aia~~~~~~~~~~~~~ 72 (180) T 3ec2_A 36 EEGKGLTFVGSP---GVGKTHLAVATLKAIYEKKGIRGYF 72 (180) T ss_dssp GGCCEEEECCSS---SSSHHHHHHHHHHHHHHHSCCCCCE T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHHHHHCCCEEEE T ss_conf 349879999989---9989999999999877605955999 No 176 >>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} (A:1-214) Probab=62.49 E-value=4.1 Score=21.01 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=19.1 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 8998230007888748999999998524 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) ++.+| -.|||||-++.++|+.|... T Consensus 55 ill~G---ppGtGKT~lak~ia~~l~~~ 79 (214) T 1w5s_A 55 YGSIG---RVGIGKTTLAKFTVKRVSEA 79 (214) T ss_dssp EECTT---CCSSSHHHHHHHHHHHHHHH T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHH T ss_conf 86468---99868999999999998763 No 177 >>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:157-348) Probab=62.37 E-value=4.1 Score=20.97 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=21.7 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 98899823000788874899999999852473 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338) -.++-+|-= |||||-++..||+.+....+ T Consensus 52 ~~iLL~GPP---GtGKT~la~~lA~~l~~~~~ 80 (192) T 1r6b_X 52 NNPLLVGES---GVGKTAIAEGLAWRIVQGDV 80 (192) T ss_dssp CEEEEECCT---TSSHHHHHHHHHHHHHHTCS T ss_pred CCEEEECCC---CCCHHHHHHHHHHHHHHCCC T ss_conf 872786577---54489999999999975359 No 178 >>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* (A:1-142) Probab=62.37 E-value=11 Score=17.94 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=24.5 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -++|||-..+-.++.+...|.++.++. T Consensus 12 M~sGKTt~Ll~~~~~~~~~g~kv~~~k 38 (142) T 2orw_A 12 MYSGKTTELLSFVEIYKLGKKKVAVFK 38 (142) T ss_dssp TTSSHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 177889999999999998799199998 No 179 >>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:1-160) Probab=62.35 E-value=4.2 Score=20.90 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=23.8 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 9889982300078887489999999985247315 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338) -+++..|. -|||||.++..+|+.+......+ T Consensus 39 ~~~Ll~Gp---pGtGKT~~a~~la~~l~~~~~~~ 69 (160) T 2chg_A 39 PHLLFSGP---PGTGKTATAIALARDLFGENWRD 69 (160) T ss_dssp CCEEEECS---TTSSHHHHHHHHHHHHHGGGGGG T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHHCCCCCC T ss_conf 85998889---99867789998888875256666 No 180 >>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} (A:274-472) Probab=62.09 E-value=11 Score=17.91 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=22.0 Q ss_pred ECCCCCCHHHHHHHHHHHHCC--CCEEEEE Q ss_conf 078887489999999985247--3159876 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKN--LKPGFLS 81 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g--~~~~ils 81 (338) .=|||||=+.++++..+.+.+ .++.+++ T Consensus 35 ~tGsGKT~~~~~~i~~~~~~~~~~~vlvi~ 64 (199) T 2w00_A 35 TTGSGKTLTSFKAARLATELDFIDKVFFVV 64 (199) T ss_dssp CTTSSHHHHHHHHHHHHTTCTTCCEEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 489846599999999998374688289995 No 181 >>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5} (A:) Probab=62.03 E-value=9 Score=18.55 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=23.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874899999999852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) -|+|||-++..|++.|...+.......... T Consensus 9 ~GsGKSTla~~L~~~l~~~~~~~~~~~~~~ 38 (195) T 2pbr_A 9 DGSGKTTQAKKLYEYLKQKGYFVSLYREPG 38 (195) T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESSC T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 889999999999999987799689986899 No 182 >>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} (A:) Probab=61.95 E-value=3.8 Score=21.26 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=27.5 Q ss_pred CCCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 898899-823000788874899999999852473159876 Q gi|254780401|r 43 PIPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 43 ~~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ...+|+ -||+ |+|||-++..|++.|..+|+.+.... T Consensus 48 ~~~~I~iEG~~---GsGKTTl~~~La~~L~~~~~~~~~e~ 84 (376) T 1of1_A 48 TLLRVYIDGPH---GMGKTTTTQLLVALGSRDDIVYVPEP 84 (376) T ss_dssp EEEEEEECSST---TSSHHHHHHHHHC----CCEEEECCC T ss_pred CEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCC T ss_conf 50599998986---57899999999987264874872475 No 183 >>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str} (A:) Probab=61.85 E-value=5.9 Score=19.87 Aligned_cols=30 Identities=17% Similarity=-0.038 Sum_probs=24.0 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874899999999852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) -|+|||-++..|++.|...|..+-.....+ T Consensus 13 ~GsGKtTla~~L~~~l~~~~~~~~~~~~~~ 42 (213) T 2plr_A 13 DGSGKSSQATLLKDWIELKRDVYLTEWNSS 42 (213) T ss_dssp TTSSHHHHHHHHHHHHTTTSCEEEEETTCC T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 987499999999999982898899978999 No 184 >>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} (A:1-201) Probab=61.73 E-value=3.9 Score=21.16 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=23.9 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 3388988998230007888748999999998524 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) ...+.+++-.|-= |||||-++..||+.+... T Consensus 47 ~~~~~~iLl~GPp---GtGKT~la~~iA~~l~~~ 77 (201) T 1ofh_A 47 EVTPKNILMIGPT---GVGKTEIARRLAKLANAP 77 (201) T ss_dssp HCCCCCEEEECCT---TSSHHHHHHHHHHHHTCC T ss_pred CCCCCEEEEECCC---CCCHHHHHHHHHHHHHCC T ss_conf 7898669998999---988899999999973234 No 185 >>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} (B:) Probab=61.59 E-value=4.9 Score=20.42 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=19.3 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 8998230007888748999999998524 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) |+-.| -=|||||-++.++|+.+... T Consensus 36 iLL~G---PpGtGKT~la~aiA~e~~~~ 60 (287) T 1gvn_B 36 FLLGG---QPGSGKTSLRSAIFEETQGN 60 (287) T ss_dssp EEEEC---CTTSCTHHHHHHHHHHTTTC T ss_pred EEEEC---CCCCCHHHHHHHHHHHCCCC T ss_conf 99806---89878899999986241897 No 186 >>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} (C:92-279) Probab=61.37 E-value=7.1 Score=19.31 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=25.7 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874899999999852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) =|+|||-+.-.|+..++..+-++.+..+-- T Consensus 17 nGsGKSTll~~l~~~~~p~~G~V~~~~~di 46 (188) T 2v3c_C 17 QGSGKTTTAAKLARYIQKRGLKPALIAADT 46 (188) T ss_dssp SSSSTTHHHHHHHHHHHHHHCCEEEECCSC T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 123620788999999997799743786311 No 187 >>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:1-179) Probab=61.07 E-value=4 Score=21.03 Aligned_cols=37 Identities=27% Similarity=0.175 Sum_probs=25.5 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 3889889982300078887489999999985247315987604 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) ..+-.++-.|- -|||||-++..||+.+.. ....++.. T Consensus 49 ~~~~~iLl~Gp---pGtGKT~~A~~la~~~~~---~~~~~~~~ 85 (179) T 1in4_A 49 EVLDHVLLAGP---PGLGKTTLAHIIASELQT---NIHVTSGP 85 (179) T ss_dssp CCCCCEEEESS---TTSSHHHHHHHHHHHHTC---CEEEEETT T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHCCC---CCCCCCCC T ss_conf 88881788898---998899999999982288---74557785 No 188 >>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:1-260,A:376-426) Probab=61.05 E-value=9.1 Score=18.54 Aligned_cols=102 Identities=14% Similarity=0.005 Sum_probs=49.2 Q ss_pred CEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--C--C Q ss_conf 8899823000--78887489999999985247315987604578777755871456788770421233220576--3--4 Q gi|254780401|r 45 PVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--T--I 118 (338) Q Consensus 45 pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--v--~ 118 (338) +++.=|.|.. -|+|||=+....+-.....|.++.|++ +...-+.+.-++-.-+.+... | + T Consensus 121 ~~l~~g~iv~~~TG~GKTlv~~lp~~~~al~G~~v~iit--------------pt~~LA~q~~~~~~~l~~~lgi~v~~~ 186 (311) T 1nkt_A 121 AALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVT--------------VNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (311) T ss_dssp HHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEE--------------SSHHHHHHHHHHHHHHHHHTTCCEEEC T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE--------------CCHHHHHHHHHHHHHHHHHHCCEEEEE T ss_conf 999379658875688699999999999971799829997--------------698885733998699998819766355 Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCC-------------CCCCCCCCEEEEEEECCCC Q ss_conf 6520122566410245747997183-------------2234412306999961843 Q gi|254780401|r 119 VTSDRKIGVQMLLQEGVDIIIMDDG-------------FHSADLQADFSLIVVNSHR 162 (338) Q Consensus 119 V~~~R~~~~~~~~~~~~diiIlDDG-------------fQh~~l~rdl~Ivl~d~~~ 162 (338) .+...... .....++|+++.--| .++....+.+..+++|-.+ T Consensus 187 ~g~~~~~e--~~~~~~~dIv~~T~~~l~~d~Lr~~~~~~~~~~~~~~l~~~IiDEaD 241 (311) T 1nkt_A 187 LATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD 241 (311) T ss_dssp CTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH T ss_pred CCCCCHHH--HHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEECC T ss_conf 79998699--99744068731679988689987402258776246777613687022 No 189 >>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} (A:) Probab=61.02 E-value=10 Score=18.13 Aligned_cols=33 Identities=6% Similarity=0.229 Sum_probs=27.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+||||- +=.+|++.|.++|+.+.+++|.-.. T Consensus 4 lVtGatGf--IG~~l~~~L~~~G~~v~~~~r~~~~ 36 (273) T 2ggs_A 4 LITGASGQ--LGIELSRLLSERHEVIKVYNSSEIQ 36 (273) T ss_dssp EEETTTSH--HHHHHHHHHTTTSCEEEEESSSCCT T ss_pred EEECCCCH--HHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 99899988--9999999997299899997787667 No 190 >>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} (A:1-65) Probab=61.01 E-value=10 Score=18.10 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.1 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 763465201225664102457479971 Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338) +.|.++.+=.+|.+.+.+..+|+||+| T Consensus 35 ~~v~~a~~g~~al~~l~~~~~dlil~D 61 (65) T 3c97_A 35 NDITVVTNGLQALQAYQNRQFDVIIMD 61 (65) T ss_dssp SEEEEESSHHHHHHHHHHSCCSEEEEC T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEE T ss_conf 999998999999999983899889863 No 191 >>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:1-156,A:315-395) Probab=60.99 E-value=7.7 Score=19.04 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=21.8 Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE Q ss_conf 788874899-999999852473159876 Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338) =|+|||-.+ ..+++.+.+.+.++.|+. T Consensus 28 TGSGKT~~~l~~il~~~~~~~~rvlvla 55 (237) T 2jlq_A 28 PGAGKTKRILPSIVREALLRRLRTLILA 55 (237) T ss_dssp TTSSCCTTHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 9984899999999998770798799983 No 192 >>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:540-757) Probab=60.97 E-value=12 Score=17.78 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=29.4 Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 6433889889982300078887489999999985247315987 Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) +..+.+.++.-.|.- |||||=++..|++.+...+-....+ T Consensus 44 ~~~~~~~~il~~G~~---GtGKt~lAr~l~~~~~~~~~~fv~v 83 (218) T 1qvr_A 44 DPNRPIGSFLFLGPT---GVGKTELAKTLAATLFDTEEAMIRI 83 (218) T ss_dssp CSSSCSEEEEEBSCS---SSSHHHHHHHHHHHHHSSGGGEEEE T ss_pred CCCCCCEEEEEECCC---CCCHHHHHHHHHHHHCCCCCCEEEE T ss_conf 999986589987788---7337999999999962896406996 No 193 >>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} (A:1-166) Probab=60.96 E-value=4 Score=21.06 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=21.4 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC Q ss_conf 3889889982300078887489999999985247 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338) +.|-.++-.|- -|||||-++.++|+.+.... T Consensus 22 ~~~~~iLl~Gp---pGtGKt~lA~~lA~~l~~~~ 52 (166) T 1a5t_A 22 RGHHALLIQAL---PGMGDDALIYALSRYLLCQQ 52 (166) T ss_dssp CCCSEEEEECC---TTSCHHHHHHHHHHHHTCSS T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHHHCCC T ss_conf 96725846899---99779999999999970879 No 194 >>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} (A:37-273) Probab=60.92 E-value=8.1 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|||||-++.-++-.....|.++..++ T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyi~ 62 (237) T 1u94_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (237) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 767789999999999855798699981 No 195 >>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} (A:369-546) Probab=60.88 E-value=7.4 Score=19.17 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) -|+|||-+...|++.|.........+.. T Consensus 13 ~GsGKSTia~~La~~l~~~~~~~~~~~~ 40 (178) T 2gks_A 13 PCAGKSTIAEILATMLQARGRKVTLLDG 40 (178) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEECH T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 5882759999999999866981999887 No 196 >>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} (A:1-202) Probab=60.82 E-value=2.3 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.022 Sum_probs=19.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|+|||-....-+......|-+..+++ T Consensus 49 TGsGKT~~~~l~~~~~~~~~~~~l~l~ 75 (202) T 2p6r_A 49 TAAGKTLLAEMAMVREAIKGGKSLYVV 75 (202) T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 986299999999999986199599992 No 197 >>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3} (A:) Probab=60.38 E-value=6.9 Score=19.39 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=25.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) =|+|||-++..++......|.++..+|- T Consensus 30 ~g~GKT~~~~~~a~~~~~~g~~v~~i~~ 57 (260) T 3bs4_A 30 ASSRGKDILFYILSRKLKSDNLVGMFSI 57 (260) T ss_dssp GGGCHHHHHHHHHHHHHHTTCEEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 9999899999999999867993799980 No 198 >>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:255-525) Probab=60.29 E-value=8.4 Score=18.77 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=24.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|+|||-++.-++....+.|.++..+| T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyis 62 (271) T 1tf7_A 36 TGTGKTLLVSRFVENACANKERAILFA 62 (271) T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 876699999999999986599439998 No 199 >>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, structural genomics, protein structure initiative; HET: NAD; 1.87A {Archaeoglobus fulgidus} (A:1-166) Probab=60.07 E-value=10 Score=18.19 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=26.7 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| =+-.+|++.|.++|+.+.+++|.=.. T Consensus 5 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~ 37 (166) T 3ehe_A 5 VVTGGAG--FIGSHVVDKLSESNEIVVIDNLSSGN 37 (166) T ss_dssp EEETTTS--HHHHHHHHHHTTTSCEEEECCCSSCC T ss_pred EECCCCC--HHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 9877886--99999999998399889998689888 No 200 >>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} (A:) Probab=59.92 E-value=0.19 Score=30.49 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=18.0 Q ss_pred CCCCHHHHHHHHC-CCCCCEEEECCCCCCC Q ss_conf 6520122566410-2457479971832234 Q gi|254780401|r 119 VTSDRKIGVQMLL-QEGVDIIIMDDGFHSA 147 (338) Q Consensus 119 V~~~R~~~~~~~~-~~~~diiIlDDGfQh~ 147 (338) .+..=..++..+. +.+.+|++.|+..+.. T Consensus 50 lG~SG~sa~a~Ll~~~G~~V~v~D~~~~~~ 79 (201) T 1vp8_A 50 ASSYGDTAXKALEXAEGLEVVVVTYHTGFV 79 (201) T ss_dssp ECSSSHHHHHHHHHCTTCEEEEEECCTTSS T ss_pred EECCCHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 817866999999983598099995646878 No 201 >>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* (A:) Probab=59.76 E-value=7.3 Score=19.22 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=22.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874899999999852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) =|+|||-++..|++.+..........-+.| T Consensus 11 ~GsGKTTla~~L~~~l~~~~~~~~~~~~~~ 40 (205) T 2ccj_A 11 EGSGKTTVINEVYHRLVKDYDVIMTREPGG 40 (205) T ss_dssp TTSCHHHHHHHHHHHHTTTSCEEEEESSTT T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 888599999999999966998899879999 No 202 >>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Bacteriophage T7} (A:24-296) Probab=59.64 E-value=8.8 Score=18.62 Aligned_cols=30 Identities=20% Similarity=0.068 Sum_probs=23.6 Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEEECC Q ss_conf 788874899999999-852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKA-VIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~-l~~~g~~~~ilsRGY 84 (338) .|+|||-++..++.. ....|.++..++=.. T Consensus 21 ~G~GKT~l~~~~~~~~~~~~g~~vl~~~~e~ 51 (273) T 1cr0_A 21 SGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 51 (273) T ss_dssp TTSSHHHHHHHHHHHHHHTSCCCEEEEESSS T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEECCH T ss_conf 9985999999999987774200202100101 No 203 >>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} (A:) Probab=59.57 E-value=8.8 Score=18.62 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=25.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) =|+|||-++.-++......|.++..++- T Consensus 32 ~GsGKt~~~~~~~~~~~~~g~~~~~~~~ 59 (247) T 2dr3_A 32 PGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEES T ss_pred CCCCHHHHHHHHHHHHHHHCCCEECCCC T ss_conf 9988999999999999870797510555 No 204 >>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303) Probab=59.46 E-value=8.7 Score=18.67 Aligned_cols=111 Identities=18% Similarity=0.276 Sum_probs=66.3 Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCCCC-CCCH Q ss_conf 823000788--874899999999852473159876045787777558714567--88770421233220576346-5201 Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVTIV-TSDR 123 (338) Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv~V-~~~R 123 (338) ||=+|.||- |=-..+..+++.....|+++.-+-+||.+-..+.+...+..+ .....|- ..|-..+++-.. ..++ T Consensus 4 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GG-tiLgtsR~~~~~~~~~~ 82 (182) T 1zxx_A 4 IGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSG-TFLYSARYPEFAEEEGQ 82 (182) T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCS-CTTCCCCCGGGTSHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCC-CCCCCCCCCCCCCHHHH T ss_conf 99988578737799999999999997899899987306874689917799999876773377-40135777755555667 Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCCCC--CEEEEEEECC Q ss_conf 22566410245747997---1832234412--3069999618 Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSADLQ--ADFSLIVVNS 160 (338) Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~l~--rdl~Ivl~d~ 160 (338) .++++.+.+.+.|.+|. |+-|+--..- -++.++-+.. T Consensus 83 ~~~~~~l~~~~Id~LivIGGdGS~~~a~~L~~~gi~vIgIPk 124 (182) T 1zxx_A 83 LAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIGLPG 124 (182) T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEE T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEE T ss_conf 778889987078889996797279999987542466443023 No 205 >>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} (A:) Probab=59.45 E-value=12 Score=17.60 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 000788874899999999852473159876045787 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) +++|||| -+-.+|++.|.++|+.+.++.|..... T Consensus 5 lVTGatG--fiG~~lv~~Ll~~g~~V~~~~r~~~~~ 38 (330) T 2c20_A 5 LICGGAG--YIGSHAVKKLVDEGLSVVVVDNLQTGH 38 (330) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSCC T ss_pred EECCCCC--HHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 9888888--899999999997839899997888678 No 206 >>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} (A:109-229) Probab=59.43 E-value=6 Score=19.80 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=21.7 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 00078887489999999985247315987 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) +..||||=||+.-++-..+.+..-++.++ T Consensus 8 ~iagG~GiaP~~s~l~~~~~~~~~~v~l~ 36 (121) T 2pia_A 8 LVAGGIGITPMLSMARQLRAEGLRSFRLY 36 (121) T ss_dssp EEEEGGGHHHHHHHHHHHHHHCSSEEEEE T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEE T ss_conf 99825777608999999987214772589 No 207 >>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:1-191) Probab=59.36 E-value=4.5 Score=20.71 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=19.4 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 88998230007888748999999998524 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .++-.|. -|||||-++.++|+.|... T Consensus 60 ~~Ll~Gp---pG~GKT~~a~ala~~l~~~ 85 (191) T 1sxj_D 60 HMLFYGP---PGTGKTSTILALTKELYGP 85 (191) T ss_dssp CEEEECS---TTSSHHHHHHHHHHHHHHH T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 3998898---9999899999999851455 No 208 >>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} (A:1-177) Probab=59.23 E-value=4.5 Score=20.69 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=22.8 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) --++..|- -|||||-++.++|+.+. .....++ T Consensus 40 ~giLL~GP---pGtGKT~la~alA~~~~---~~~~~~~ 71 (177) T 2qz4_A 40 KGALLLGP---PGCGKTLLAKAVATEAQ---VPFLAMA 71 (177) T ss_dssp CEEEEESC---TTSSHHHHHHHHHHHHT---CCEEEEE T ss_pred CCEEEECC---CCCCCCHHHHHHHHCCC---CCEEEEE T ss_conf 84387579---99884215688751358---9739988 No 209 >>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} (A:) Probab=59.20 E-value=12 Score=17.57 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=27.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+||||. +=..|++.|.++|+.+..++|.-.. T Consensus 4 lItGatG~--iG~~l~~~L~~~g~~v~~~~r~~~~ 36 (221) T 3ew7_A 4 GIIGATGR--AGSRILEEAKNRGHEVTAIVRNAGK 36 (221) T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEESCSHH T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 99999848--9999999999785989999898677 No 210 >>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:231-503) Probab=58.98 E-value=5.1 Score=20.34 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=23.1 Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEEEC Q ss_conf 788874899999999-85247315987604 Q gi|254780401|r 55 GGTGKTPTALAIAKA-VIDKNLKPGFLSRG 83 (338) Q Consensus 55 GGtGKTP~v~~l~~~-l~~~g~~~~ilsRG 83 (338) -|+|||-++..++.. ....|.++..+|=. T Consensus 21 ~g~GKT~l~~~~~~~~~~~~g~~vl~~~~E 50 (273) T 1q57_A 21 SGMVMSTFVRQQALQWGTAMGKKVGLAMLE 50 (273) T ss_dssp SCHHHHHHHHHHHHHHTTTSCCCEEEEESS T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 424299999998875665137732334334 No 211 >>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277) Probab=58.94 E-value=6.7 Score=19.47 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=19.6 Q ss_pred ECCCCCCHHHHHHHHHHHHCC----CCEEEEE Q ss_conf 078887489999999985247----3159876 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKN----LKPGFLS 81 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g----~~~~ils 81 (338) .-|||||=+....+.++...+ .++.+++ T Consensus 23 ~~GsGKT~~~~~~~~~ll~~~~~~~~~il~v~ 54 (195) T 1uaa_A 23 GAGSGKTRVITNKIAHLIRGCGYQARHIAAVT 54 (195) T ss_dssp CTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEC T ss_conf 08447999999999999980898960499875 No 212 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1405-1641) Probab=58.90 E-value=8.1 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.2 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|||||-++.-++-.....|.++..++ T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyi~ 62 (237) T 3cmw_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (237) T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC T ss_pred CCCCCEEEEHHHHHHHCCCCCHHHHCC T ss_conf 887737775876544404452454336 No 213 >>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} (A:1-185) Probab=58.89 E-value=4.6 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=23.2 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC Q ss_conf 33889889982300078887489999999985247 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338) .+.+-.++-.|- -|||||.++.++|+.|.... T Consensus 42 ~~~~~~lLl~Gp---pG~GKt~la~~lA~~l~~~~ 73 (185) T 1njg_A 42 GRIHHAYLFSGT---RGVGKTSIARLLAKGLNCET 73 (185) T ss_dssp TCCCSEEEEECS---TTSCHHHHHHHHHHHHHCTT T ss_pred CCCCEEEEEECC---CCCCHHHHHHHHHHHHCCCC T ss_conf 998706988899---98768999999999846854 No 214 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1749-1985) Probab=58.87 E-value=8.1 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.2 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|||||-++.-++-.....|.++..++ T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyi~ 62 (237) T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (237) T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC T ss_pred CCCCCCCCCEEEEHHHCCCCCCCEEEE T ss_conf 766667301011075528876404663 No 215 >>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} (A:) Probab=58.79 E-value=13 Score=17.52 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 000788874899999999852473159876045 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) +.+|||| -+=.+|++.|.++|+.+.++.|.- T Consensus 5 lITGatG--fiG~~l~~~Ll~~g~~v~~~~~~~ 35 (347) T 1orr_A 5 LITGGCG--FLGSNLASFALSQGIDLIVFDNLS 35 (347) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9918874--899999999997839899997988 No 216 >>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} (A:24-137,A:224-347,A:402-437) Probab=58.79 E-value=8.4 Score=18.80 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.0 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|+|||-+...++..+...|..+.|+- T Consensus 39 TGsGKT~~l~~li~~l~~~~~~~~iiD 65 (274) T 1e9r_A 39 TGTGKSVLLRELAYTGLLRGDRMVIVD 65 (274) T ss_dssp TTSSHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999889999999999985899889997 No 217 >>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* (A:77-305) Probab=58.66 E-value=11 Score=18.03 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=23.6 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 43388988998230007888748999999998524 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .......+|..|. ||||||-+...|++.+... T Consensus 46 ~~~~~~~~il~Gp---~gtGKst~~~~i~~~~~~~ 77 (229) T 2v9p_A 46 GIPKKNCLAFIGP---PNTGKSMLCNSLIHFLGGS 77 (229) T ss_dssp TCTTCSEEEEECS---SSSSHHHHHHHHHHHHTCE T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 8997418999879---9988899999999983887 No 218 >>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} (A:88-282) Probab=58.48 E-value=7.6 Score=19.11 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=18.8 Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEE Q ss_conf 07888748999999998524-73159876 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK-NLKPGFLS 81 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~-g~~~~ils 81 (338) .=|+|||...+.++..+... +.++.++. T Consensus 49 ~tG~GKT~~~~~~~~~~~~~~~~~~~ii~ 77 (195) T 1rif_A 49 PTSAGRSLIQALLARYYLENYEGKILIIV 77 (195) T ss_dssp CTTSCHHHHHHHHHHHHHHHCSSEEEEEC T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 40367007999999986523673599997 No 219 >>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} (A:392-573) Probab=58.12 E-value=7.4 Score=19.17 Aligned_cols=31 Identities=19% Similarity=0.106 Sum_probs=25.9 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 0788874899999999852473159876045 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) .-|||||-++..|++.|....+...-+.++. T Consensus 13 ~~GsGKsTla~~La~~l~~~~~~~~~~~~~~ 43 (182) T 1m8p_A 13 YMNSGKDAIARALQVTLNQQGGRSVSLLLGD 43 (182) T ss_dssp STTSSHHHHHHHHHHHHHHHCSSCEEEEEHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECHH T ss_conf 8998875999999999997479638982689 No 220 >>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} (A:) Probab=58.11 E-value=6.7 Score=19.47 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=21.9 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 88998230007888748999999998524731598 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338) -|+..|+. |+|||-++..|++.|...+..+.. T Consensus 7 iI~i~G~~---GsGKsTla~~L~~~l~~~~~~~~~ 38 (216) T 3tmk_A 7 LILIEGLD---RTGKTTQCNILYKKLQPNCKLLKF 38 (216) T ss_dssp EEEEEECS---SSSHHHHHHHHHHHHCSSEEEEES T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 89998998---887999999999999709889997 No 221 >>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} (B:48-269) Probab=58.07 E-value=13 Score=17.44 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=6.0 Q ss_pred CCHHHHHHHHHH Q ss_conf 535789998874 Q gi|254780401|r 232 ADTEKFFTTVRQ 243 (338) Q Consensus 232 a~P~~F~~~L~~ 243 (338) +.|++|.+.+.+ T Consensus 144 ~Tp~~l~~~l~~ 155 (222) T 3kx2_B 144 MTDGMLLREAME 155 (222) T ss_dssp EEHHHHHHHHHH T ss_pred ECCHHHHHHHHH T ss_conf 733899999864 No 222 >>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305) Probab=57.46 E-value=12 Score=17.74 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=64.9 Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCCCC-CCCH Q ss_conf 823000788--874899999999852473159876045787777558714567--88770421233220576346-5201 Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVTIV-TSDR 123 (338) Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv~V-~~~R 123 (338) ||=+|.||- |=-..+..+++.....|+++.-+-.||.+-..+.+..-+..+ ....-|- ..|-..+++-.. ...+ T Consensus 4 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~ev~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GG-t~LgtsR~~~~~~~~~~ 82 (186) T 3pfk_A 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGG-TILYTARCPEFKTEEGQ 82 (186) T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCS-CTTCCCCCGGGSSHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHCCC-CHHCCCCCCCCCCCHHH T ss_conf 99987688768999999999999997799999984156875679951599899987986485-11045888865431015 Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCC-CC-CEEEEEEECC Q ss_conf 22566410245747997---18322344-12-3069999618 Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSAD-LQ-ADFSLIVVNS 160 (338) Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~-l~-rdl~Ivl~d~ 160 (338) .++++.+.+.+.|.+|. ||-++--. |+ ..+.++.+.. T Consensus 83 ~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vigiPk 124 (186) T 3pfk_A 83 KKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGVPG 124 (186) T ss_dssp HHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 579999998367659994584799999998733675553111 No 223 >>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, structural genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} (A:1-198) Probab=57.36 E-value=13 Score=17.36 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=24.7 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 007888748999999998524731598760457 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) .+|||| -+=.+|++.|.++|+.+.++.|-.. T Consensus 32 VtGgtG--fIG~~lv~~L~~~g~~V~~~~~~~~ 62 (198) T 2b69_A 32 ITGGAG--FVGSHLTDKLXXDGHEVTVVDNFFT 62 (198) T ss_dssp EETTTS--HHHHHHHHHHHHTTCEEEEEECCSS T ss_pred EECCCC--HHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 978972--8999999999978698999968876 No 224 >>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii} (A:1-187) Probab=57.26 E-value=5.6 Score=20.04 Aligned_cols=24 Identities=33% Similarity=0.140 Sum_probs=17.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .|||||-++.++|+.+. .....++ T Consensus 60 pGtGKT~~a~ala~~~~---~~~~~~~ 83 (187) T 3h4m_A 60 PGTGKTLLAKAVATETN---ATFIRVV 83 (187) T ss_dssp SSSSHHHHHHHHHHHTT---CEEEEEE T ss_pred CCCCHHHHHHHHHHHHC---CCEEEEE T ss_conf 99980199999999829---9779998 No 225 >>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} (A:1-196) Probab=57.25 E-value=5.1 Score=20.29 Aligned_cols=29 Identities=28% Similarity=0.190 Sum_probs=22.0 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 88988998230007888748999999998524 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .+..++-.|.- |||||=++.++|+.+... T Consensus 63 ~~~~iLl~Gpp---GtGKT~la~aia~~l~~~ 91 (196) T 1d2n_A 63 PLVSVLLEGPP---HSGKTALAAKIAEESNFP 91 (196) T ss_dssp SEEEEEEECST---TSSHHHHHHHHHHHHTCS T ss_pred CCCEEEEECCC---CCCHHHHHHHHHHHCCCC T ss_conf 98269988949---998899999998743677 No 226 >>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthesis, methyltransferase, transferase; 2.3A {Escherichia coli} (A:) Probab=56.55 E-value=14 Score=17.27 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=27.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| -+=.+|++.|.++|+.+.++.|.-.. T Consensus 4 LVtGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~~ 36 (345) T 2bll_A 4 LILGVNG--FIGNHLTERLLREDHYEVYGLDIGSD 36 (345) T ss_dssp EEETCSS--HHHHHHHHHHHHSTTCEEEEEESCCG T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9989886--89999999999779988999968972 No 227 >>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} (A:1-210) Probab=56.55 E-value=4.6 Score=20.62 Aligned_cols=34 Identities=35% Similarity=0.271 Sum_probs=22.9 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8898899823000788874899999999852473159876 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .+.-++--|- -|||||-++.++|+.+. .....++ T Consensus 72 ~~~giLL~Gp---pGtGKT~la~a~A~~~~---~~~~~~~ 105 (210) T 1iy2_A 72 IPKGVLLVGP---PGVGKTHLARAVAGEAR---VPFITAS 105 (210) T ss_dssp CCCEEEEECC---TTSSHHHHHHHHHHHTT---CCEEEEE T ss_pred CCCCEEEECC---CCCCCHHHHHHHHHHCC---CCEEEEE T ss_conf 9980377579---99983389999998749---9769988 No 228 >>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} (A:) Probab=56.53 E-value=14 Score=17.27 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=26.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0007888748999999998524731598760457 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) +.+||||.. =.+|++.|.++|+.+.+++|.-. T Consensus 4 lItGatG~i--G~~l~~~L~~~g~~V~~~~r~~~ 35 (224) T 3h2s_A 4 AVLGATGRA--GSAIVAEARRRGHEVLAVVRDPQ 35 (224) T ss_dssp EEETTTSHH--HHHHHHHHHHTTCEEEEEESCHH T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCHH T ss_conf 999988579--99999999978698999988857 No 229 >>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} (A:) Probab=56.52 E-value=14 Score=17.27 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC Q ss_conf 0007888748999999998524731598760457877775 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRIS 91 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~ 91 (338) |.+|||| -+=-+|++.|.++|+.|..+.|.-....... T Consensus 6 LItGatG--fiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 43 (286) T 3gpi_A 6 ILIAGCG--DLGLELARRLTAQGHEVTGLRRSAQPMPAGV 43 (286) T ss_dssp EEEECCS--HHHHHHHHHHHHTTCCEEEEECTTSCCCTTC T ss_pred EEEECCC--HHHHHHHHHHHHCCCEEEEEECCHHHCCCCC T ss_conf 9998921--9999999999978598999978712260678 No 230 >>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} (A:1-365) Probab=56.50 E-value=14 Score=17.26 Aligned_cols=37 Identities=41% Similarity=0.403 Sum_probs=25.7 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 4338898899823000788874899999999852473159876 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) +..++--++-.|-= |||||-++..||+.|.. ...+++ T Consensus 59 ~~~~~~~iLl~GPp---GtGKT~la~alA~~l~~---~~~~~~ 95 (365) T 2c9o_A 59 KKMAGRAVLLAGPP---GTGKTALALAIAQELGS---KVPFCP 95 (365) T ss_dssp TCCTTCEEEEECCT---TSSHHHHHHHHHHHHCT---TSCEEE T ss_pred CCCCCCEEEEECCC---CCCHHHHHHHHHHHHCC---CCCCCC T ss_conf 98668779998999---98899999999998489---999767 No 231 >>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} (A:365-552) Probab=56.26 E-value=5.8 Score=19.94 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=28.4 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 8899823000788874899999999852473159876045 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) -|+..|.. |+|||-++..|++.|....+......+.. T Consensus 7 ~I~i~G~~---GsGKTTla~~La~~l~~~~~~~~~~~~~~ 43 (188) T 3cr8_A 7 TVFFTGLS---GAGKSTLARALAARLMEMGGRCVTLLDGD 43 (188) T ss_dssp EEEEEESS---CHHHHHHHHHHHHHHHTTCSSCEEEESSH T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECHH T ss_conf 99997888---88772899999999712468727984346 No 232 >>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:360-386,A:602-759) Probab=56.20 E-value=14 Score=17.23 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=19.5 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .-||--+-|-.-.+.+++.|.++.++| T Consensus 22 ~~~~~~t~v~~~I~~l~~~GI~~~m~T 48 (185) T 2zxe_A 22 DKTGTLAAVPDAVGKCRSAGIKVIMVT 48 (185) T ss_dssp CCCCCCTTHHHHHHHHHHTTCEEEEEC T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEC T ss_conf 054202679999999997797799986 No 233 >>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:179-444) Probab=56.15 E-value=11 Score=17.99 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=22.0 Q ss_pred CCCCCCHHHHHHH-HHHHHCCCCEEEEEE Q ss_conf 7888748999999-998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIA-KAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~-~~l~~~g~~~~ilsR 82 (338) =|+|||-++.-++ ......|..+..+|- T Consensus 31 ~G~GKTt~~~q~~~~~~~~~g~~vl~~~~ 59 (266) T 2q6t_A 31 PAMGKTAFALTIAQNAALKEGVGVGIYSL 59 (266) T ss_dssp TTSCHHHHHHHHHHHHHHTTCCCEEEEES T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 55322079999898898736994799715 No 234 >>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens} (A:1-250,A:340-357) Probab=56.02 E-value=4.5 Score=20.68 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=16.9 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHH Q ss_conf 898899823000788874899999999852 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338) +-.++..|-- |||||=++.++|+.+.. T Consensus 117 ~~~iLL~GPP---GtGKT~la~alA~~l~~ 143 (268) T 3d8b_A 117 PKGILLFGPP---GTGKTLIGKCIASQSGA 143 (268) T ss_dssp CSEEEEESST---TSSHHHHHHHHHHHTTC T ss_pred CCEEEEECCC---CCCHHHHHHHHHCCCCC T ss_conf 8756887899---99866999998523389 No 235 >>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:1-26,A:113-258) Probab=55.86 E-value=14 Score=17.19 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=32.7 Q ss_pred CCCEEEECC-----EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 898899823-----000788874899999999852473159876045 Q gi|254780401|r 43 PIPVICVGG-----FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 43 ~~pVI~VGN-----itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) +..|.|-|- +-..||---|=+..+.+.|+++|++++|+|.+- T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~PGv~e~L~~L~~~G~~v~ivTn~~ 51 (172) T 3iru_A 5 KANVFCAGPVEALILDWAGTTIIPGWKEVFDKLIAQGIKVGGNTGYG 51 (172) T ss_dssp CCCCCCCCCCCEEEEESBTTTBCTTHHHHHHHHHHTTCEEEEECSSC T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC T ss_conf 45776679862999828897675757999999985236089980785 No 236 >>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} (A:) Probab=55.71 E-value=14 Score=17.18 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=26.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| -+=.+|++.|.++|+++.++.|.-.. T Consensus 25 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~ 57 (333) T 2q1w_A 25 FITGICG--QIGSHIAELLLERGDKVVGIDNFATG 57 (333) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9927888--89999999999782989999799855 No 237 >>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} (B:32-62,B:311-519) Probab=55.68 E-value=13 Score=17.42 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=20.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 1686389874155357899988740100001221 Q gi|254780401|r 220 LSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYS 253 (338) Q Consensus 220 l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~ 253 (338) +.|+++.++.+-...-.+-+.|+++|..++.... T Consensus 79 L~Gkrv~I~g~~~~~~~l~~~L~ElGm~vv~~~~ 112 (240) T 1qgu_B 79 LHGKKFGLYGDPDFVMGLTRFLLELGCEPTVILS 112 (240) T ss_dssp HTTCEEEEESCHHHHHHHHHHHHHTTCEEEEEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 0797799989828899999999987995569863 No 238 >>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} (B:) Probab=55.51 E-value=6.1 Score=19.78 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=23.0 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8898899823000788874899999999852473159876 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .|.-|+-.|- =|||||=++.++|..+.. ....++ T Consensus 31 ~p~giLl~Gp---pGtGKT~la~ala~e~~~---~~~~i~ 64 (253) T 2p5t_B 31 QPIAILLGGQ---SGAGKTTIHRIKQKEFQG---NIVIID 64 (253) T ss_dssp SCEEEEEESC---GGGTTHHHHHHHHHHTTT---CCEEEC T ss_pred CCEEEEEECC---CCCCHHHHHHHHHHHHCC---CEEEEE T ss_conf 9879999899---998999999999876467---639998 No 239 >>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A (A:178-286) Probab=55.49 E-value=14 Score=17.15 Aligned_cols=94 Identities=7% Similarity=0.025 Sum_probs=55.4 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH-HHHHCCCCCCCCHHHHCCEEEEEE-EEEE Q ss_conf 78999887401000012214332348989999999975647987998546-634382333441112205178876-9895 Q gi|254780401|r 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK-DAMRLHKRPGRAEEIFAKSMVIEV-DIVF 312 (338) Q Consensus 235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK-D~VKL~~~~~~~~~l~~~~~~l~i-~~~~ 312 (338) ..|-...+.+|++....+....+..-|.+++.++.+..++++...|-+|- ---|.-+. ...+....+.+++. .-.. T Consensus 10 ~af~Yl~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~i~~e~~~~~~~~~~--ia~~~~~~~~~l~~l~~~~ 87 (109) T 3gi1_A 10 TAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHA--IAKSTGAKVKTLSPLEAAP 87 (109) T ss_dssp SCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHH--HHHTTTCEEEECCCSCSCC T ss_pred CHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH--HHHHHCCCEEEECCCCCCC T ss_conf 05678999769827632566876789989999999999975998899958899399999--9998299878747776788 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 787899999999999986 Q gi|254780401|r 313 ENPDDLTNLVEMTVVSFA 330 (338) Q Consensus 313 ~~~~~l~~~l~~~i~~~~ 330 (338) .+.....+++++.+..+. T Consensus 88 ~~~~~Y~~~m~~n~~~l~ 105 (109) T 3gi1_A 88 SGNKTYLENLRANLEVLY 105 (109) T ss_dssp SSSCCHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 886659999999999999 No 240 >>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286) Probab=54.86 E-value=12 Score=17.69 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=18.9 Q ss_pred ECCCCCCHHHHHHHHHHHHCC----CCEEEEE Q ss_conf 078887489999999985247----3159876 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKN----LKPGFLS 81 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g----~~~~ils 81 (338) ..|||||=+....+..+...+ .++.+++ T Consensus 32 ~tGsGKT~~~~~~i~~~l~~~~~~~~~il~i~ 63 (200) T 1pjr_A 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT 63 (200) T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE T ss_pred ECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 38427999999999999980998942299993 No 241 >>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} (A:) Probab=54.82 E-value=15 Score=17.08 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.7 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 0007888748999999998524731598760457877 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338) +.+||||. +=.+|++.|.++|+++.+++|.-.... T Consensus 4 lItGatG~--iG~~lv~~L~~~g~~v~~~~r~~~~~~ 38 (219) T 3dqp_A 4 FIVGSTGR--VGKSLLKSLSTTDYQIYAGARKVEQVP 38 (219) T ss_dssp EEESTTSH--HHHHHHHHHTTSSCEEEEEESSGGGSC T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHH T ss_conf 99999988--999999999978398999989878804 No 242 >>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} (A:) Probab=54.63 E-value=13 Score=17.32 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=26.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+||||.. =..|++.|.++|+.+.+++|.... T Consensus 22 lItGatG~i--G~~l~~~l~~~g~~v~~~~r~~~~ 54 (242) T 2bka_A 22 FILGASGET--GRVLLKEILEQGLFSKVTLIGRRK 54 (242) T ss_dssp EEECTTSHH--HHHHHHHHHHHTCCSEEEEEESSC T ss_pred EEECCCCHH--HHHHHHHHHHCCCCCEEEEEECCH T ss_conf 998998689--999999999779972699853673 No 243 >>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A (A:1-159,A:317-397) Probab=54.39 E-value=11 Score=17.83 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=21.6 Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE Q ss_conf 788874899-999999852473159876 Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338) =|+|||=.+ ..+++.+...+.++.|+. T Consensus 30 TGsGKT~~~l~~i~~~~~~~~~rvLiLa 57 (240) T 2z83_A 30 PGSGKTRKILPQIIKDAIQQRLRTAVLA 57 (240) T ss_dssp TTSCTTTTHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEH T ss_conf 9985889999999998772798399986 No 244 >>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A (A:) Probab=54.34 E-value=8.5 Score=18.73 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=30.0 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH-C--CCCEEEEEECCCC Q ss_conf 8898899823000788874899999999852-4--7315987604578 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID-K--NLKPGFLSRGYGR 86 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~--g~~~~ilsRGYg~ 86 (338) ..|-.||.||+ +.+|++.++.+.+.+ + +-++-|-|.|=.. T Consensus 5 ~~ILFVC~gN~-----cRS~mAEal~~~~~~~~~l~~~~~v~SAG~~~ 47 (163) T 1u2p_A 5 LHVTFVCTGNI-----CRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGN 47 (163) T ss_dssp EEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCTTTEEEEEEESSC T ss_pred CEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC T ss_conf 87999818848-----79999999999999866888707884377666 No 245 >>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} (A:1-272) Probab=54.25 E-value=5.3 Score=20.19 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=24.0 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 4338898899823000788874899999999852473159876 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..++|--++-.|= =|||||=++.+||+.+. .....++ T Consensus 68 ~~~~~~giLL~GP---PGtGKT~lakalA~~~~---~~~~~~~ 104 (272) T 1um8_A 68 VELSKSNILLIGP---TGSGKTLMAQTLAKHLD---IPIAISD 104 (272) T ss_dssp TTCCCCCEEEECC---TTSSHHHHHHHHHHHTT---CCEEEEE T ss_pred CCCCCCCEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEE T ss_conf 5678754365389---98757999999985254---7755520 No 246 >>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-140) Probab=54.13 E-value=5.8 Score=19.92 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=17.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCC Q ss_conf 7888748999999998524731 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~ 76 (338) -|||||-++.++|+.+...... T Consensus 27 pG~GKT~la~~ia~~~~~~~~~ 48 (140) T 2gno_A 27 DLSYPREVSLELPEYVEKFPPK 48 (140) T ss_dssp SSSHHHHHHHHHHHHHHTSCCC T ss_pred CCCCHHHHHHHHHHHHHCCCCC T ss_conf 9988799999999987344677 No 247 >>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} (A:) Probab=54.05 E-value=5.9 Score=19.85 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.7 Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHH Q ss_conf 643388988998230007888748999999 Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338) Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338) ...+.++.|+.||+ +|+|||-++..+. T Consensus 20 ~~~~~~~Ki~ivG~---~~vGKTsli~rl~ 46 (198) T 1f6b_A 20 GLYKKTGKLVFLGL---DNAGKTTLLHMLK 46 (198) T ss_dssp TCTTCCEEEEEEEE---TTSSHHHHHHHHS T ss_pred CCCCCCCEEEEECC---CCCCHHHHHHHHH T ss_conf 15666647999999---9998899999995 No 248 >>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} (B:1-233) Probab=54.04 E-value=9.3 Score=18.47 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=30.3 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 89982300078887489999999985247315987604578 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) |+.+|-- |+|||-++..|++.|.-..+....+.+...+ T Consensus 55 I~i~G~~---GsGKTTia~~La~~l~~~~i~~d~~~~~~~~ 92 (233) T 1x6v_B 55 VWLTGLS---GAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (233) T ss_dssp EEEECST---TSSHHHHHHHHHHHHHHTTCCEEEESHHHHT T ss_pred EEEECCC---CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH T ss_conf 9998999---9989999999999966036897102589999 No 249 >>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} (A:) Probab=53.84 E-value=15 Score=16.97 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| -+=..|++.|.++|+.+.+++|.-.. T Consensus 7 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~ 39 (206) T 1hdo_A 7 AIFGATG--QTGLTTLAQAVQAGYEVTVLVRDSSR 39 (206) T ss_dssp EEESTTS--HHHHHHHHHHHHTTCEEEEEESCGGG T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 9999998--89999999999786989999848254 No 250 >>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A (A:1-183,A:302-322) Probab=53.58 E-value=6.1 Score=19.79 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=20.4 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHH Q ss_conf 98899823000788874899999999852 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338) --++-.|-- |||||-++.++|+.+.. T Consensus 52 ~giLl~GPp---GtGKT~lakaiA~~l~~ 77 (204) T 3eie_A 52 SGILLYGPP---GTGKSYLAKAVATEANS 77 (204) T ss_dssp CEEEEECSS---SSCHHHHHHHHHHHHTC T ss_pred CCEEEECCC---CCCHHHHHHHHHHHCCC T ss_conf 805887999---99802898988876289 No 251 >>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:1-168) Probab=53.51 E-value=6.9 Score=19.40 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=21.5 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 889982300078887489999999985247315 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338) +++..|. -|||||.++..+++.+....... T Consensus 48 ~~Ll~Gp---pG~GKT~~a~~ia~~~~~~~~~~ 77 (168) T 1iqp_A 48 HLLFAGP---PGVGKTTAALALARELFGENWRH 77 (168) T ss_dssp EEEEESC---TTSSHHHHHHHHHHHHHGGGHHH T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHCCCCC T ss_conf 7988897---99999999999999976402477 No 252 >>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* (A:) Probab=53.32 E-value=15 Score=16.92 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=26.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0007888748999999998524731598760457 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) |.+|||| =+=.+|++.|.++|+.+.++.|.-. T Consensus 25 LVTGgtG--fIG~~lv~~L~~~g~~v~~~~~~~~ 56 (344) T 2gn4_A 25 LITGGTG--SFGKCFVRKVLDTTNAKKIIVYSRD 56 (344) T ss_dssp EEETTTS--HHHHHHHHHHHHHCCCSEEEEEESC T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEEECC T ss_conf 9988888--9999999999965998699997087 No 253 >>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} (A:) Probab=53.29 E-value=14 Score=17.10 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=26.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| =+=.+|++.|.++|+.+.++.|.-.. T Consensus 33 LItGatG--fiG~~lv~~L~~~g~~v~~~~~~~~~ 65 (379) T 2c5a_A 33 SITGAGG--FIASHIARRLKHEGHYVIASDWKKNE 65 (379) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESSCCS T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9978888--89999999999782989999689852 No 254 >>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} (A:167-319) Probab=53.16 E-value=5.4 Score=20.17 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=17.8 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 0788874899999999852473159876 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -+|||||-+.-.+++.+ +.++.+.+ T Consensus 34 ~~GTGKT~~l~~~~~~~---~~~vl~~A 58 (153) T 2zpa_A 34 ARGRGKSALAGQLISRI---AGRAIVTA 58 (153) T ss_dssp CTTSSHHHHHHHHHHHS---SSCEEEEC T ss_pred CCCCCHHHHHHHHHHHC---CCCEEEEC T ss_conf 66786899999999840---79889989 No 255 >>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} (A:) Probab=53.01 E-value=16 Score=16.88 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0007888748999999998524731598760457 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) +.+||||-. =..+++.|.++|+.|.+++|.-. T Consensus 8 lVtGatG~i--G~~lv~~Ll~~g~~V~~~~r~~~ 39 (321) T 3c1o_A 8 IIYGGTGYI--GKFMVRASLSFSHPTFIYARPLT 39 (321) T ss_dssp EEETTTSTT--HHHHHHHHHHTTCCEEEEECCCC T ss_pred EEECCCCHH--HHHHHHHHHHCCCCEEEEECCCC T ss_conf 998999789--99999999968994899988886 No 256 >>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} (A:) Probab=52.82 E-value=5.8 Score=19.93 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=24.3 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 8899823000788874899999999852473159876045 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) -|.-.|++ |+|||-+|..+++.|.- +-.|-|--| T Consensus 35 ii~L~G~l---GAGKTtlvr~l~~~lg~---~~~V~SPTf 68 (158) T 1htw_A 35 MVYLNGDL---GAGKTTLTRGMLQGIGH---QGNVKSPTY 68 (158) T ss_dssp EEEEECST---TSSHHHHHHHHHHHTTC---CSCCCCCTT T ss_pred EEEEECCC---CCCHHHHHHHHHHHCCC---CCCCCCCCC T ss_conf 99998787---68999999999997687---787779950 No 257 >>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:146-383) Probab=52.37 E-value=16 Score=16.82 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=18.0 Q ss_pred CCCCCCHHHHHHHHHHH--HCCCCEEEEE Q ss_conf 78887489999999985--2473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVI--DKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~--~~g~~~~ils 81 (338) =|+|||=++..++-.+. +.|.++.+++ T Consensus 42 tG~GKT~~~~~~~~~~~~~~~~~~vliv~ 70 (238) T 3cpe_A 42 RQLGKTTVVAIFLAHFVCFNKDKAVGILA 70 (238) T ss_dssp SSSCHHHHHHHHHHHHHHTSSSCEEEEEE T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 98878999999999999849997699990 No 258 >>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* (A:) Probab=52.31 E-value=16 Score=16.81 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=37.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECHHHHHH Q ss_conf 86389874155357899988740100-0012214332348989999999975647987-9985466343 Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLGAL-IEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI-LVTTAKDAMR 288 (338) Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g~~-i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTTEKD~VK 288 (338) +....-+.-+.|=.+....+-+.+-. ........+...++..|+.+++.++...... ...+..++-+ T Consensus 189 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~ 257 (346) T 3i6i_A 189 GNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLA 257 (346) T ss_dssp SCCCEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHH T ss_pred CCCEEEECCHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHH T ss_conf 985388505999999999996290331937998489887749999999999989988558789999999 No 259 >>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} (A:1-271) Probab=52.13 E-value=12 Score=17.56 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=18.5 Q ss_pred CCCHHHHHHHHHHHCCCC--CCCCCCCCCCCC----CHHHHHHHHHHHH Q ss_conf 553578999887401000--012214332348----9899999999756 Q gi|254780401|r 231 IADTEKFFTTVRQLGALI--EQCYSFGDHAHL----SDKKIAYLLDQAQ 273 (338) Q Consensus 231 Ia~P~~F~~~L~~~g~~i--~~~~~fpDHh~y----s~~dl~~i~~~a~ 273 (338) ||.|.+....+++....+ ++.+.+.+.... -..++..|.+... T Consensus 184 V~TP~rl~~~~~~~~~~l~~~~~lVlDEaD~ll~~~f~~~~~~Il~~l~ 232 (271) T 2db3_A 184 IATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT 232 (271) T ss_dssp EECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTT T ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCHHHHHHHHHHHH T ss_conf 9678644332111332225554999989132267421145999999843 No 260 >>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} (A:1-188) Probab=51.87 E-value=6.1 Score=19.77 Aligned_cols=33 Identities=27% Similarity=0.184 Sum_probs=22.0 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 898899823000788874899999999852473159876 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) +--|+..|= =|||||-++.++|..+. .....++ T Consensus 54 ~~giLl~GP---pGtGKT~la~aiA~~l~---~~~~~~~ 86 (188) T 3b9p_A 54 AKGLLLFGP---PGNGKTLLARAVATECS---ATFLNIS 86 (188) T ss_dssp CSEEEEESS---SSSCHHHHHHHHHHHTT---CEEEEEE T ss_pred CCEEEEECC---CCCCCCHHHHHHCCCCC---CCCCCCC T ss_conf 834787789---99985325441012556---4102033 No 261 >>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} (A:) Probab=51.85 E-value=4.6 Score=20.64 Aligned_cols=21 Identities=19% Similarity=0.168 Sum_probs=17.5 Q ss_pred CCCCCHHHHHHHHHHHHCCCC Q ss_conf 888748999999998524731 Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~ 76 (338) |||||-++..+++.|....+. T Consensus 15 GtGKT~~a~a~a~~l~~l~~~ 35 (199) T 2r2a_A 15 GSGKTLKXVSXXANDEXFKPD 35 (199) T ss_dssp TSSHHHHHHHHHHHCGGGSCC T ss_pred CCHHHHHHHHHHHHHCCCCCC T ss_conf 973999999999997767776 No 262 >>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} (A:) Probab=51.63 E-value=16 Score=16.74 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=72.5 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC Q ss_conf 89889982300078887489999999985247315987604578777755871456788770421233220576346520 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD 122 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~ 122 (338) |.-+|.+|+=.-||-| +.++++|..+|++|.+.-.+-..+++ + T Consensus 133 ~~V~vl~G~gnnGgdg-----l~~AR~L~~~G~~V~v~~~~~~~~~~-------------~------------------- 175 (306) T 3d3j_A 133 PTVALLCGPHVKGAQG-----ISCGRHLANHDVQVILFLPNFVKMLE-------------S------------------- 175 (306) T ss_dssp CEEEEEECSSHHHHHH-----HHHHHHHHHTTCEEEEECCCCSSCCH-------------H------------------- T ss_pred CEEEEEECCCCCCHHH-----HHHHHHHHHCCCEEEEEEECCCCCCH-------------H------------------- T ss_conf 9799998999872999-----99999999779838999727866798-------------9------------------- Q ss_pred HHHHHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH-HHHH Q ss_conf 12256641-024574799718322344123069999618433566553761365210025566514544204412-4577 Q gi|254780401|r 123 RKIGVQML-LQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK-NVIS 200 (338) Q Consensus 123 R~~~~~~~-~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~-~~~~ 200 (338) ...++ .-......+..+.-.-.- ...+ ++||+.-|+|..+-.+.++.++=+. .+++..+-++.-... .... T Consensus 176 ---~~~~~~~~~~~~~~~~~~~~~~~~--~~~d-liIDal~G~g~~r~~~~~~~~~li~-~~N~~~~~vlsiDiPSGl~~ 248 (306) T 3d3j_A 176 ---ITNELSLFSKTQGQQVSSLKDLPT--SPVD-LVINCLDCPENVFLRDQPWYKAAVA-WANQNRAPVLSIDPPVHEVE 248 (306) T ss_dssp ---HHHHHHHHHTSSCEEESCSTTSCS--SCCS-EEEEECCCTTCGGGGGCHHHHHHHH-HHHHSCCCEEEESCCCC--- T ss_pred ---HHHHHHHHHHCCCCEECCHHHHCC--CCCC-EEEECCCCCCCCCCCCCHHHHHHHH-HHHHCCCCEEEEECCCCCCC T ss_conf ---999999998638965342355345--7775-8998424366677765199999999-99856997799858998887 Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH Q ss_conf 6313501112222013211168638987415535789998 Q gi|254780401|r 201 SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT 240 (338) Q Consensus 201 ~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~ 240 (338) ...+...-.+-.-++.-....|+ +.++.||=|+.+++. T Consensus 249 ~~v~a~~tvt~g~pK~gl~~~G~--~~l~diGip~~~~~~ 286 (306) T 3d3j_A 249 QGIDAKWSLALGLPLPLGEHAGR--IYLCDIGIPQQVFQE 286 (306) T ss_dssp --CCCSEEEEESSCCCCCGGGCE--EEEECCCCCHHHHHH T ss_pred CCCCCCEEEECCCCCCCHHHCCE--EEEECCCCCHHHHHH T ss_conf 76268878971873573655882--999768899899997 No 263 >>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} (A:303-660) Probab=51.43 E-value=16 Score=16.71 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=26.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0007888748999999998524731598760457 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) |.+|||| -+=.+|++.|.++|+.+.++.|.-. T Consensus 17 lVtGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~ 48 (358) T 1z7e_A 17 LILGVNG--FIGNHLTERLLREDHYEVYGLDIGS 48 (358) T ss_dssp EEETTTS--HHHHHHHHHHHHSSSEEEEEEESCC T ss_pred EECCCCC--CCHHHHHHHHHHCCCCEEEEEECCC T ss_conf 8678997--6389999999968998899996898 No 264 >>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} (A:) Probab=51.14 E-value=6.9 Score=19.41 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=42.6 Q ss_pred CCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--------CCCCCCHHH Q ss_conf 78887489-999999985247315987604578777755871456788770421233220576--------346520122 Q gi|254780401|r 55 GGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--------TIVTSDRKI 125 (338) Q Consensus 55 GGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--------v~V~~~R~~ 125 (338) =|||||-. ++-+...+......+- ...+.+....+.++-+|...+.+... ..++..... T Consensus 50 TGSGKTlaf~lpil~~~~~~~~~~~------------~~~~~PTreL~~Qi~~~~~~l~~~~~~~~~~~~~~~~gg~~~~ 117 (219) T 1q0u_A 50 TGTGKTHAYLLPIXEKIKPERAEVQ------------AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQ 117 (219) T ss_dssp SSHHHHHHHHHHHHHHCCTTSCSCC------------EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH T ss_pred CCCCCCCEEECCHHHCCCCCCCCCC------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHH T ss_conf 9999764321002221342345765------------5322574999998887663320012334201025655671439 Q ss_pred HHHHHCCCCCCEEEE------CCCCCCCCCCCEEEEEEEC Q ss_conf 566410245747997------1832234412306999961 Q gi|254780401|r 126 GVQMLLQEGVDIIIM------DDGFHSADLQADFSLIVVN 159 (338) Q Consensus 126 ~~~~~~~~~~diiIl------DDGfQh~~l~rdl~Ivl~d 159 (338) .-......++++++- |..-++.---.++..+++| T Consensus 118 ~~~~~l~~~~~iiv~Tpgrl~~~~~~~~~~l~~i~~lVlD 157 (219) T 1q0u_A 118 KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219) T ss_dssp HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC T ss_pred HHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 9999737999889968737899987277544653279986 No 265 >>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:1-196) Probab=50.98 E-value=17 Score=16.67 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=18.8 Q ss_pred CCCCCCHHHHHHHH-HHHHCCCCEEEEE Q ss_conf 78887489999999-9852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAK-AVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~-~l~~~g~~~~ils 81 (338) -|+|||=+....+. .+.+.+.++.++. T Consensus 32 tG~GKT~~~~~~~l~~~~~~~~~vl~i~ 59 (196) T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLA 59 (196) T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEEC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9773999999999999985599199992 No 266 >>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:1-254) Probab=50.96 E-value=13 Score=17.38 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.6 Q ss_pred CCCCCCHHHHHHH-HHHHHCCCCEEEEEECCC Q ss_conf 7888748999999-998524731598760457 Q gi|254780401|r 55 GGTGKTPTALAIA-KAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 55 GGtGKTP~v~~l~-~~l~~~g~~~~ilsRGYg 85 (338) -|+|||-++..++ ......|.++.++|-.+. T Consensus 48 pG~GKT~~~~q~~~~~~~~~~~~~~~~s~e~~ 79 (254) T 1tf7_A 48 SGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (254) T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 99999999999999999867981999977799 No 267 >>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} (A:) Probab=50.86 E-value=13 Score=17.55 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=27.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) |.+|||| -+=.+|++.|.++|+.+.++.|.--. T Consensus 4 LVtGatG--fiG~~l~~~L~~~g~~v~~~~r~~~~ 36 (299) T 1n2s_A 4 LLFGKTG--QVGWELQRSLAPVGNLIALDVHSKEF 36 (299) T ss_dssp EEECTTS--HHHHHHHHHTTTTSEEEEECTTCSSS T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 9989998--89999999998789999997898544 No 268 >>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} (A:464-622) Probab=50.83 E-value=12 Score=17.68 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=21.3 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 88988998230007888748999999998524 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) ..-|+|.| +||||=||+.-+|-..+... T Consensus 5 ~~~~~i~I----a~GtGIaP~~s~l~~~~~~~ 32 (159) T 1ja1_A 5 STTPVIMV----GPGTGIAPFMGFIQERAWLR 32 (159) T ss_dssp TTSCEEEE----CCGGGGHHHHHHHHHHHHHH T ss_pred CCCCEEEE----ECCCCCHHHHHHHHHHHHHH T ss_conf 99987999----56866302789999999998 No 269 >>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} (A:) Probab=50.76 E-value=7.6 Score=19.08 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=17.8 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 33889889982300078887489999999 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) +.....||.||+ +|.|||-++..++. T Consensus 22 ~~~~~KiiivGd---~gVGKTsLi~r~~~ 47 (193) T 2oil_A 22 YNFVFKVVLIGE---SGVGKTNLLSRFTR 47 (193) T ss_dssp CSEEEEEEEESS---TTSSHHHHHHHHHH T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHC T ss_conf 777889999998---99799999999964 No 270 >>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} (A:1-185) Probab=50.73 E-value=7.5 Score=19.11 Aligned_cols=33 Identities=36% Similarity=0.348 Sum_probs=22.9 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 898899823000788874899999999852473159876 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) +--++--|- -|||||=++.++|+.+. .....++ T Consensus 49 ~~giLL~Gp---pGtGKT~la~ala~~l~---~~~~~i~ 81 (185) T 2ce7_A 49 PKGILLVGP---PGTGKTLLARAVAGEAN---VPFFHIS 81 (185) T ss_dssp CSEEEEECC---TTSSHHHHHHHHHHHHT---CCEEEEE T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHHC---CCEEEEE T ss_conf 965999799---99988999999986308---8179988 No 271 >>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (B:33-63,B:339-522) Probab=50.66 E-value=17 Score=16.63 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=38.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCHHHHHHHHCCCCCCEE Q ss_conf 89999999985247315987604578777755871456788770421233220--5763465201225664102457479 Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDRKIGVQMLLQEGVDII 138 (338) Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R~~~~~~~~~~~~dii 138 (338) ..+..+++.|.+.|..|+.+.=+.+.+. ..+...++-.-+.. ...|+++.|-.+-...+.+.++|++ T Consensus 66 ~~~~~la~fL~ElGm~vv~~~~~~~~~~-----------~~e~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDLi 134 (215) T 1m1n_B 66 DFVMGLVKFLLELGCEPVHILCHNGNKR-----------WKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFM 134 (215) T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCHH-----------HHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHSCCSEE T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCEE T ss_conf 8999999999986997349994589978-----------99999999852556878779968999999999862799999 Q ss_pred EEC Q ss_conf 971 Q gi|254780401|r 139 IMD 141 (338) Q Consensus 139 IlD 141 (338) |-. T Consensus 135 ig~ 137 (215) T 1m1n_B 135 IGN 137 (215) T ss_dssp EEC T ss_pred EEC T ss_conf 978 No 272 >>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} (A:198-371) Probab=50.61 E-value=6.6 Score=19.53 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=22.0 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8898899823000788874899999999852473159876 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .+--++-.|- -|||||=++.++|+.+. .....++ T Consensus 40 ~~~giLl~Gp---pGtGKT~~a~AlA~~~~---~~~~~~~ 73 (174) T 1e32_A 40 PPRGILLYGP---PGTGKTLIARAVANETG---AFFFLIN 73 (174) T ss_dssp CCCEEEEECC---TTSSHHHHHHHHHHHTT---CEEEEEC T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHC---CCEEEEE T ss_conf 8844798898---99998999999999969---9689998 No 273 >>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} (A:1-185) Probab=50.54 E-value=6.7 Score=19.50 Aligned_cols=30 Identities=37% Similarity=0.221 Sum_probs=20.0 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 899823000788874899999999852473159876 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ++--|- =|||||-++.++|+.+.. ....++ T Consensus 52 iLl~Gp---pGtGKT~la~ala~~~~~---~~~~i~ 81 (185) T 1ixz_A 52 VLLVGP---PGVGKTHLARAVAGEARV---PFITAS 81 (185) T ss_dssp EEEECC---TTSSHHHHHHHHHHHTTC---CEEEEE T ss_pred EEEECC---CCCCCHHHHHHHHHHCCC---CEEEEE T ss_conf 687679---987720899999977399---769988 No 274 >>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99) Probab=50.46 E-value=17 Score=16.61 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=28.4 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCC--C----CCCCCCCEEEEEEECCCC Q ss_conf 76346520122566410245747997183--2----234412306999961843 Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDG--F----HSADLQADFSLIVVNSHR 162 (338) Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDG--f----Qh~~l~rdl~Ivl~d~~~ 162 (338) ..|.+..+-.+|...+.+..+|+|||+|+ + +=++..++.-|+++.+.. T Consensus 25 ~~v~~a~~~~~a~~~~~~~~~dlviLp~~~G~~ll~~lr~~~~~~pvI~lt~~~ 78 (99) T 2hqr_A 25 FMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNP 78 (99) T ss_dssp CCEEEESSHHHHHHHHTTSCCSEEEECCTTHHHHHHHHHHHCTTSEEEEEESSC T ss_pred CEEEEECCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999998999999999973698611022233211112222222222221233211 No 275 >>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* (A:) Probab=50.42 E-value=17 Score=16.61 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=26.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| -+=.+|++.|.++|+.+.++.|.-.. T Consensus 4 lVtGatG--~iG~~lv~~Ll~~g~~V~~~~~~~~~ 36 (311) T 2p5y_A 4 LVTGGAG--FIGSHIVEDLLARGLEVAVLDNLATG 36 (311) T ss_dssp EEETTTS--HHHHHHHHHHHTTTCEEEEECCCSSC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9988878--89999999999786989999788866 No 276 >>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} (A:1-181) Probab=50.21 E-value=7.7 Score=19.05 Aligned_cols=34 Identities=41% Similarity=0.335 Sum_probs=23.3 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8898899823000788874899999999852473159876 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) .|--++..|- -|||||-++.++|+.+. .....++ T Consensus 44 ~~~giLl~Gp---pGtGKT~la~a~a~~~~---~~~~~~~ 77 (181) T 1lv7_A 44 IPKGVLMVGP---PGTGKTLLAKAIAGEAK---VPFFTIS 77 (181) T ss_dssp CCCEEEEECC---TTSCHHHHHHHHHHHHT---CCEEEEC T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEE T ss_conf 8975786689---99877699999998809---9869988 No 277 >>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} (A:238-291) Probab=50.14 E-value=12 Score=17.72 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 5789998874010000122143323489899999999756 Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQ 273 (338) Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~ 273 (338) ++-..++|.+.|.--+....-..||.|+..|+..|+..++ T Consensus 14 ~~el~~il~e~g~iev~C~FC~~~Y~f~~~el~~l~~~~~ 53 (54) T 1vzy_A 14 KKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQTT 53 (54) T ss_dssp HHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHHHHCC T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHCC T ss_conf 9999999963997899976879989879999999986513 No 278 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418) Probab=50.11 E-value=17 Score=16.57 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=43.3 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC---CC-CCCCCCHHHHHHHHCCCCCC Q ss_conf 899999999852473159876045787777558714567887704212332205---76-34652012256641024574 Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR---AV-TIVTSDRKIGVQMLLQEGVD 136 (338) Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~---~p-v~V~~~R~~~~~~~~~~~~d 136 (338) ..+..+++.|++.|..|..+.=+++. ...--++--.++.. .+ |+.+.|..+-.+.+.+.++| T Consensus 13 ~~~~~l~~~l~ElGm~vv~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~vv~~~d~~el~~~i~~~~pD 78 (109) T 1mio_B 13 DEIIALSKFIIELGAIPKYVVTGTPG--------------MKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVD 78 (109) T ss_dssp HHHHHHHHHHHTTTCEEEEEEESSCC--------------HHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCS T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCC--------------HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCC T ss_conf 88999999999849901488726897--------------7778999999986589887899799999999999744999 Q ss_pred EEEECCCCCCCCCCCEEEEEEE Q ss_conf 7997183223441230699996 Q gi|254780401|r 137 IIIMDDGFHSADLQADFSLIVV 158 (338) Q Consensus 137 iiIlDDGfQh~~l~rdl~Ivl~ 158 (338) ++|-. -.-+.+.+.+.|=++ T Consensus 79 liig~--s~~~~~a~klgiP~i 98 (109) T 1mio_B 79 LLISN--TYGKFIAREENIPFV 98 (109) T ss_dssp EEEES--GGGHHHHHHHTCCEE T ss_pred EEEEC--CHHHHHHHHCCCCEE T ss_conf 99979--458999998299989 No 279 >>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} (A:) Probab=50.10 E-value=17 Score=16.57 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=26.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) |.+|||| -+=.+|++.|.++|+.|..+.|.-.. T Consensus 8 LVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~ 40 (286) T 3ius_A 8 LLSFGHG--YTARVLSRALAPQGWRIIGTSRNPDQ 40 (286) T ss_dssp EEEETCC--HHHHHHHHHHGGGTCEEEEEESCGGG T ss_pred EEEECCH--HHHHHHHHHHHHCCCEEEEEECCCHH T ss_conf 8998960--99999999999789989999388133 No 280 >>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} (A:1-91) Probab=50.08 E-value=7.9 Score=18.95 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=22.3 Q ss_pred CCCC-CCCCHHHHHHHHCCCCCCEEEECCCC Q ss_conf 7634-65201225664102457479971832 Q gi|254780401|r 115 AVTI-VTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338) Q Consensus 115 ~pv~-V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338) ..|+ .+.+-.+|.+.+.+..+|+||+|=-+ T Consensus 34 ~~v~~~a~~g~~Al~~~~~~~pDliilDi~l 64 (91) T 3cg0_A 34 YDVLGVFDNGEEAVRCAPDLRPDIALVDIML 64 (91) T ss_dssp CEEEEEESSHHHHHHHHHHHCCSEEEEESSC T ss_pred CCEEEEECCHHHHHHHHHHCCCCEEEEEECC T ss_conf 9569986899999999983799889986035 No 281 >>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} (A:) Probab=50.08 E-value=15 Score=16.93 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=35.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 8638987415535789998874010000-12214332348989999999975647987998 Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLGALIE-QCYSFGDHAHLSDKKIAYLLDQAQQKGLILVT 281 (338) Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g~~i~-~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiT 281 (338) +....-+.-+.|-..+...+-+..-... +.....+...++..|+.+++.++......+.. T Consensus 188 ~~~~~~~i~~~D~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~ 248 (313) T 1qyd_A 188 GNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIY 248 (313) T ss_dssp SCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECC T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 7640364129999999999966911029679994899887799999999999899870898 No 282 >>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} (A:) Probab=49.98 E-value=16 Score=16.70 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=46.4 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH Q ss_conf 078887489999999985247315987604578777755871456788770421233220576----3465201225664 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM 129 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~ 129 (338) -=|||||=. |+.-.+.......... +....-..+++.+...-+.++-+|...+..... +..+..+..-. . T Consensus 65 ~TGSGKT~a--f~ip~l~~~~~~~~~~---~~~~~~~~lIl~PTrELa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 138 (228) T 3iuy_A 65 QTGTGKTLS--YLMPGFIHLDSQPISR---EQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI-E 138 (228) T ss_dssp CTTSCHHHH--HHHHHHHHHC------------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH-H T ss_pred CCCCCCCCH--HHHHHHHHHHCCCCCC---CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH-H T ss_conf 899986501--4777899875152100---146785599980532468999999998645998799998998879999-9 Q ss_pred HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC Q ss_conf 10245747997183-----2-2344123069999618 Q gi|254780401|r 130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS 160 (338) Q Consensus 130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~ 160 (338) ....++++++.--| + ++.---..+..+++|- T Consensus 139 ~~~~~~~ivv~Tpgrl~~~~~~~~~~l~~l~~lVlDE 175 (228) T 3iuy_A 139 DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228) T ss_dssp HHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECC T ss_pred HHCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEECC T ss_conf 8628999999796455434666751267624998514 No 283 >>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* (X:1-216,X:335-355) Probab=49.97 E-value=7.8 Score=19.01 Aligned_cols=35 Identities=26% Similarity=0.134 Sum_probs=25.1 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 38898899823000788874899999999852473159876 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..+--|+..|-- |||||-++.+||+.+. .....++ T Consensus 82 ~~~~giLl~GPP---GtGKT~lakaiA~~l~---~~~~~~~ 116 (237) T 2qp9_X 82 KPTSGILLYGPP---GTGKSYLAKAVATEAN---STFFSVS 116 (237) T ss_dssp CCCCCEEEECST---TSCHHHHHHHHHHHHT---CEEEEEE T ss_pred CCCCCCEEECCC---CCCCCHHHHHHHHHHH---CCCEEEE T ss_conf 888865446899---9986447787898874---2462765 No 284 >>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum} (A:1-196,A:353-390) Probab=49.93 E-value=4.3 Score=20.87 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.4 Q ss_pred CCCCCC-HHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874-899999999852473159876045 Q gi|254780401|r 55 GGTGKT-PTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKT-P~v~~l~~~l~~~g~~~~ilsRGY 84 (338) =||||| =+.+.+.+++.+.+.++.|+++-. T Consensus 13 TGsGKTlayLlp~l~~l~~~~~k~iIltPT~ 43 (234) T 2vsf_A 13 TGSGKTIMALKSALQYSSERKLKVLYLVRTN 43 (234) T ss_dssp SSSSTTHHHHHTTCSSTTTTSCEEEEEESSH T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEECCCH T ss_conf 7688999999999999997699199986679 No 285 >>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* (A:) Probab=49.70 E-value=12 Score=17.71 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=17.6 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..+|+|.-. -|+||| -||+.|.+.+..+.+.+ T Consensus 21 ~~iI~i~G~--~GsGKt----Tla~~L~~~~~~~~~~~ 52 (207) T 2qt1_A 21 TFIIGISGV--TNSGKT----TLAKNLQKHLPNCSVIS 52 (207) T ss_dssp CEEEEEEES--TTSSHH----HHHHHHHTTSTTEEEEE T ss_pred EEEEEEECC--CCCCHH----HHHHHHHHHHCCCEEEE T ss_conf 299999999--987699----99999999808985995 No 286 >>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima} (A:245-302) Probab=49.52 E-value=18 Score=16.51 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 5789998874010000122143323489899999999756479 Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG 276 (338) Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338) ++-..+++++-.+.+ ....-..||.|++.|++.|++.+...+ T Consensus 15 ~~el~~i~~eg~iev-~C~fC~~~Y~f~~~el~~l~~~~~~~~ 56 (58) T 1vq0_A 15 KKELEDMRKEGKGEV-VCKWCNTRYVFSEEELEELLKFKVDDS 56 (58) T ss_dssp HHHHHHHHHHTCEEE-ECTTTCCEEEECHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHCCCEEE-EEECCCCEEEECHHHHHHHHHHCCCCC T ss_conf 999999997598399-998989979869999999997425988 No 287 >>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} (A:) Probab=49.43 E-value=5.9 Score=19.88 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=29.3 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 988998230007888748999999998524731598760457 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) .-|+..|. -|+|||-.+..|++.|...++.+....|-+. T Consensus 6 ~~I~ieG~---~GSGKtT~a~~Lae~l~~~~i~~~~~~r~~~ 44 (222) T 1zak_A 6 LKVMISGA---PASGKGTQCELIKTKYQLAHISAGDLLRAEI 44 (222) T ss_dssp CCEEEEES---TTSSHHHHHHHHHHHHCCEECCHHHHHHHHH T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCEEECHHHHHHHHH T ss_conf 08999899---9999799999999997997784899999988 No 288 >>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:) Probab=49.42 E-value=18 Score=16.50 Aligned_cols=89 Identities=8% Similarity=0.027 Sum_probs=51.4 Q ss_pred EECCCCC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHH-HHHHH Q ss_conf 0078887-489999999985247315987604578777755871456788770421233220576346520122-56641 Q gi|254780401|r 53 VMGGTGK-TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKI-GVQML 130 (338) Q Consensus 53 tvGGtGK-TP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~-~~~~~ 130 (338) .+|.|.+ +.....+++.|++.|+++.++..+++...-....+.. +..++.+++=+ +-+++..+... ..+.+ T Consensus 18 ViGaS~~~~~~g~~v~~~L~~~g~~~~~~~p~~~~~~i~g~~~~~---sl~~~~~~~D~----vvi~vp~~~~~~~l~e~ 90 (140) T 1iuk_A 18 VLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVA---SLLDLKEPVDI----LDVFRPPSALMDHLPEV 90 (140) T ss_dssp EETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBS---SGGGCCSCCSE----EEECSCHHHHTTTHHHH T ss_pred EEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCEEEEC---CHHHCCCCCCE----EEEEECHHHHHHHHHHH T ss_conf 992269999719999999972898389978767642556827525---56775899728----99980889989999999 Q ss_pred CCCCCC-EEEECCCCCCCC Q ss_conf 024574-799718322344 Q gi|254780401|r 131 LQEGVD-IIIMDDGFHSAD 148 (338) Q Consensus 131 ~~~~~d-iiIlDDGfQh~~ 148 (338) .+.++. +++.-+||+... T Consensus 91 ~~~g~~~~~~~~g~~~e~~ 109 (140) T 1iuk_A 91 LALRPGLVWLQSGIRHPEF 109 (140) T ss_dssp HHHCCSCEEECTTCCCHHH T ss_pred HHCCCCEEEECCCCCCHHH T ss_conf 9649898998989779999 No 289 >>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: AMP; 2.28A {Pyrococcus horikoshii} (A:) Probab=49.32 E-value=18 Score=16.49 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=48.2 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECC---CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC----CCCHHHHHHHHC Q ss_conf 74899999999852473159876045---78777755871456788770421233220576346----520122566410 Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRGY---GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIV----TSDRKIGVQMLL 131 (338) Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRGY---g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V----~~~R~~~~~~~~ 131 (338) --|+..|+.+.+++.|..=+.+.||. |...+ + | .+..+-++..-||+| .+++.+...... T Consensus 24 g~pl~~~il~~~r~~GiaGaTV~rgi~GfG~~g~--i------h-----~~~~~~ls~dlPvvVe~vd~~eki~~~l~~l 90 (127) T 2dcl_A 24 GRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSR--V------H-----SSDVIRLSTDLPIIVEVVDRGHNIEKVVNVI 90 (127) T ss_dssp TEEHHHHHHHHHHHTTCSCEEEEECSEEEC---------------------------CCCEEEEEEEEEHHHHHHHHHHH T ss_pred CEEHHHHHHHHHHHCCCCCEEEEECCEECCCCCC--C------C-----CCCHHHHCCCCCEEEEEECCHHHHHHHHHHH T ss_conf 6399999999998879982699853152189987--1------2-----5622111699988999977999999999999 Q ss_pred C-C-CCCEEEECCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 2-4-57479971832234412306999961843356 Q gi|254780401|r 132 Q-E-GVDIIIMDDGFHSADLQADFSLIVVNSHRGLG 165 (338) Q Consensus 132 ~-~-~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~g 165 (338) + . .--+|++. |++++-+....++| T Consensus 91 ~~l~~~glit~e----------~v~v~~~~~~~~~~ 116 (127) T 2dcl_A 91 KPMIKDGMITVE----------PTIVLWVGTQEEIK 116 (127) T ss_dssp TTTCSSSEEEEE----------ECEEEECCSSCC-- T ss_pred HHHCCCCEEEEE----------EEEEEEECCCCCCC T ss_conf 986468649999----------88999966866533 No 290 >>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:1-202) Probab=49.29 E-value=5.5 Score=20.07 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=22.5 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 89982300078887489999999985247315987 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) |+..| .+|+|||-++..+++.+...+....+. T Consensus 34 v~i~G---~~G~GKTsL~~~~~~~~~~~~~~~~~~ 65 (202) T 2qen_A 34 TLLLG---IRRVGKSSLLRAFLNERPGILIDCREL 65 (202) T ss_dssp EEEEC---CTTSSHHHHHHHHHHHSSEEEEEHHHH T ss_pred EEEEC---CCCCCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 99981---999989999999999644544158998 No 291 >>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:428-654) Probab=49.22 E-value=5.2 Score=20.26 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=43.8 Q ss_pred ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC-------CHHH------------ Q ss_conf 823000788874899999999852473159876045787777558714567887704-------2123------------ Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG-------DEPL------------ 109 (338) Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG-------DEp~------------ 109 (338) ||=+=.-|+|||-+.-.|+...............+|-.... .... ...++.+.. +|.. T Consensus 37 i~lvG~NGaGKSTllk~l~g~~~~~~~~~~~~~~~~~~q~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (227) T 2iw3_A 37 YGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDI--DGTH-SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE 113 (227) T ss_dssp EEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC--CCCC-TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHH T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCCHHHCCEEEEEECC--CCCC-CCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHH T ss_conf 37889999619999999968997887552113579997100--1357-76429999985794079999999986799714 Q ss_pred HHHHCCCCCCCCCHHH-HHHHHCCCCCCEEEECCCCCCC Q ss_conf 3220576346520122-5664102457479971832234 Q gi|254780401|r 110 LLARRAVTIVTSDRKI-GVQMLLQEGVDIIIMDDGFHSA 147 (338) Q Consensus 110 lla~~~pv~V~~~R~~-~~~~~~~~~~diiIlDDGfQh~ 147 (338) ...+..-...+..|.+ ++..+.-.+++++|||.=--|. T Consensus 114 ~~~~~~~~LSGGqkqRv~lA~~l~~~p~lLiLDEPTn~L 152 (227) T 2iw3_A 114 XIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHL 152 (227) T ss_dssp HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 423728887889999999999873799813536897757 No 292 >>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} (A:202-291) Probab=49.20 E-value=18 Score=16.48 Aligned_cols=50 Identities=8% Similarity=0.177 Sum_probs=40.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 78999887401000012214332348989999999975647987998546 Q gi|254780401|r 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK 284 (338) Q Consensus 235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK 284 (338) ..|--..+.+|++.+..+.-..+..-|.+++.++.+.+++++...|-+|. T Consensus 11 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~i~~l~~~ik~~~i~~if~e~ 60 (90) T 1xvl_A 11 GAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCES 60 (90) T ss_dssp STTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEET T ss_pred CCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC T ss_conf 41146898679836640266887789988999999987634885899738 No 293 >>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} (B:104-262) Probab=49.18 E-value=13 Score=17.34 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=25.7 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 8988998230007888748999999998524731598760457877 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338) .-|+|.| +||||=||+.-.+-..+.. +-++.++ |+.++ T Consensus 7 ~~~~i~I----agGtGIaP~~s~l~~~~~~-~~~v~l~---~g~r~ 44 (159) T 1ep3_B 7 TDKILII----GGGIGVPPLYELAKQLEKT-GCQMTIL---LGFAS 44 (159) T ss_dssp TSEEEEE----EEGGGSHHHHHHHHHHHHH-TCEEEEE---EEESS T ss_pred CCEEEEE----ECCCCHHHHHHHHHHHHHC-CCCCEEE---EEECC T ss_conf 7549999----3776588999999999984-9964899---99798 No 294 >>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} (A:) Probab=49.13 E-value=5.3 Score=20.21 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=27.6 Q ss_pred EEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 899-82300078887489999999985247315987604578 Q gi|254780401|r 46 VIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 46 VI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +|+ -||. |+|||-++..|++.|...++.+....-.|.+ T Consensus 6 ~I~ieG~~---GsGKTT~a~~L~~~L~~~~~~~~~~~~~~~~ 44 (331) T 1e2k_A 6 RVYIDGPH---GMGKTTTTQLLVALGSRDDIVYVPEPMTYWR 44 (331) T ss_dssp EEEECSCT---TSSHHHHHHHHTC----CCEEEECCCHHHHH T ss_pred EEEEECCC---CCCHHHHHHHHHHHHCCCCCEEEECCHHHCC T ss_conf 99998897---7789999999999845489379825422125 No 295 >>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} (A:1-245) Probab=49.09 E-value=4.1 Score=20.97 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=20.2 Q ss_pred ECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHHCCCCCCEEEECCC Q ss_conf 1456788770421233220576----346520122566410245747997183 Q gi|254780401|r 95 DLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQMLLQEGVDIIIMDDG 143 (338) Q Consensus 95 ~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~~~~~~diiIlDDG 143 (338) .+...-+.++.++-.-+.+..+ ++++.............+++++|..=| T Consensus 108 ~pt~ela~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iiV~TP~ 160 (245) T 2i4i_A 108 APTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPG 160 (245) T ss_dssp CSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHH T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHH T ss_conf 56511023455555420135543257630676689999998369989998959 No 296 >>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:254-396) Probab=48.92 E-value=17 Score=16.59 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.0 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -++|. .+||||=||+.-.+-..+.........+- T Consensus 7 ~~iil----iAgGtGIaP~~s~l~~~~~~~~~~~i~l~ 40 (143) T 1gvh_A 7 TPVTL----ISAGVGQTPMLAMLDTLAKAGHTAQVNWF 40 (143) T ss_dssp CCEEE----EEEGGGGHHHHHHHHHHHHHTCCSCEEEE T ss_pred CCEEE----EECCCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 74899----96788667068999999873034430430 No 297 >>1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} (A:) Probab=48.86 E-value=18 Score=16.44 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=26.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 00078887489999999985247315987604 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |.+||||-+-.=..+++.|.++|+++.+..|- T Consensus 12 lVTGass~~GIG~aia~~la~~Ga~V~i~~r~ 43 (261) T 1ulu_A 12 LVXGVTNQRSLGFAIAAKLKEAGAEVALSYQA 43 (261) T ss_dssp EEESCCCSSSHHHHHHHHHHHTTCEEEEEESS T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEECCC T ss_conf 99799998649999999999879999998074 No 298 >>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} (A:1-189) Probab=48.64 E-value=18 Score=16.42 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=25.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+||||- +=.+|++.|.++|+++.++.|.-.. T Consensus 18 lVTGgtGf--iG~~l~~~L~~~g~~V~~~~r~~~~ 50 (189) T 1rpn_A 18 LVTGITGQ--DGAYLAKLLLEKGYRVHGLVARRSS 50 (189) T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEECCCSS T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 99758878--9999999999784989999899976 No 299 >>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} (A:) Probab=48.46 E-value=10 Score=18.14 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=17.6 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 763465201225664102457479971 Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338) +.|..+.+-.+|...+.+..+|+||+| T Consensus 28 ~~v~~a~~~~~al~~l~~~~~dliilD 54 (140) T 2qr3_A 28 SKVITLSSPVSLSTVLREENPEVVLLD 54 (140) T ss_dssp SEEEEECCHHHHHHHHHHSCEEEEEEE T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEC T ss_conf 999997787999999984078879862 No 300 >>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} (A:25-236) Probab=48.40 E-value=16 Score=16.89 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=48.0 Q ss_pred ECCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCCCCCCHHHHHH Q ss_conf 078887489-99999998524731598760457877775587145678877042123322057----6346520122566 Q gi|254780401|r 54 MGGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTIVTSDRKIGVQ 128 (338) Q Consensus 54 vGGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~V~~~R~~~~~ 128 (338) -=|||||=. ++-+.+.+...... .........+......+.++-.+-..+++.. ..+++........ T Consensus 46 ~TGSGKTlaf~lP~~~~~~~~~~~--------~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (212) T 2pl3_A 46 KTGSGKTLAFLVPVLEALYRLQWT--------STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 117 (212) T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCC--------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH T ss_pred CCCCCCEEEEECHHHHHHHHCCCC--------CCCCCCEEEECCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCHHHHH T ss_conf 677774566643577633300233--------334420146534146665442100001345786338887146478888 Q ss_pred HHCCCCCCEEEE-----CCCCCCCCCC-CEEEEEEECC Q ss_conf 410245747997-----1832234412-3069999618 Q gi|254780401|r 129 MLLQEGVDIIIM-----DDGFHSADLQ-ADFSLIVVNS 160 (338) Q Consensus 129 ~~~~~~~diiIl-----DDGfQh~~l~-rdl~Ivl~d~ 160 (338) .....++++++. .|..+...+. ..+..+++|. T Consensus 118 ~~~~~~~~i~v~tp~~l~~~~~~~~~~l~~v~~lVlDE 155 (212) T 2pl3_A 118 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 155 (212) T ss_dssp HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT T ss_pred HHHCCCCEEEECCCCHHHHHHCCCCCCCCCEEEEECCC T ss_conf 77547854763042010244315654345268975021 No 301 >>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} (A:223-374) Probab=48.32 E-value=15 Score=16.98 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=23.0 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 89889982300078887489999999985247315987 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) +-|+|. .+||||=||+...+-..+....-...++ T Consensus 5 ~~~ivl----iagG~GitP~~s~l~~~~~~~~~~~~~l 38 (152) T 1ddg_A 5 ETPVIM----IGPGTGIAPFRAFMQQRAADEAPGKNWL 38 (152) T ss_dssp TSCEEE----ECCGGGGHHHHHHHHHHHHHTCCSCEEE T ss_pred CCCEEE----EECCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 665799----9368672379999999997168984899 No 302 >>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* (A:157-314) Probab=48.23 E-value=13 Score=17.45 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.9 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 988998230007888748999999998524 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) -+++. .+||||=||+...+-..++.. T Consensus 10 ~~~vl----iAgGtGitP~~s~l~~~~~~~ 35 (158) T 2rc5_A 10 GDIMF----LATGTGIAPFIGMSEELLEHK 35 (158) T ss_dssp SCEEE----EEEGGGGHHHHHHHHHHHTTC T ss_pred CCEEE----EECCEEHHHHHHHHHHHHHHH T ss_conf 86899----966762718999999999742 No 303 >>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} (A:) Probab=48.16 E-value=18 Score=16.37 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=27.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| =+=.+|++.|.++|+.+.++.|.-.. T Consensus 3 lVtG~tG--fiG~~lv~~L~~~g~~v~~~~r~~~~ 35 (310) T 1eq2_A 3 IVTGGAG--FIGSNIVKALNDKGITDILVVDNLKD 35 (310) T ss_dssp EEETTTS--HHHHHHHHHHHTTTCCCEEEEECCSS T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9973887--89999999998589977999957986 No 304 >>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} (A:65-322) Probab=47.97 E-value=4.9 Score=20.43 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=24.1 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) -|+|||.++.-++......|.+++.+|- T Consensus 43 pG~GKT~l~~q~~~~~~~~~~~~~~~~~ 70 (258) T 2i1q_A 43 FGSGKTQIMHQSCVNLQNPEFLFYDEEA 70 (258) T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTT T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 9974788999999999844895699962 No 305 >>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* (A:) Probab=47.96 E-value=3.8 Score=21.19 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=21.0 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) -|+|||-++..|++.|...++.+....+ T Consensus 9 ~GsGKtTla~~L~~~l~~~~i~~~~~~~ 36 (205) T 2jaq_A 9 VGAGKSTISAEISKKLGYEIFKEPVEEN 36 (205) T ss_dssp TTSCHHHHHHHHHHHHCCEEECCCGGGC T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 8888999999999985996698578887 No 306 >>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A (A:1-182) Probab=47.87 E-value=15 Score=17.01 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=23.7 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 07888748999999998524731598760 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) .=|+|||-+...|++.|......+.++.+ T Consensus 12 ~sGsGKSTl~r~L~~~l~~~~~~~~~~~~ 40 (182) T 3a4m_A 12 LPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (182) T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEECT T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 99998999999999998742999599782 No 307 >>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* (A:1-70,A:135-245) Probab=47.57 E-value=15 Score=17.04 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=23.9 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCC-----CCEEEEEE Q ss_conf 889982300078887489999999985247-----31598760 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKN-----LKPGFLSR 82 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-----~~~~ilsR 82 (338) .||+|.- .-|+|||-++..|++.|.... ...+.+|. T Consensus 26 ~~i~i~G--~~gsGKsT~a~~l~~~~~~~~~~~~~~~~~~~~~ 66 (181) T 2jeo_A 26 FLIGVSG--GTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQ 66 (181) T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEG T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHCCCEECCCCCEEEEECC T ss_conf 8999789--9866499999999999685722678605899727 No 308 >>3i0z_A Putative tagatose-6-phosphate ketose/aldose isomerase; NP_344614.1, structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4} (A:55-173) Probab=47.51 E-value=19 Score=16.30 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=22.2 Q ss_pred CCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCC Q ss_conf 788874899999999852--47315987604578 Q gi|254780401|r 55 GGTGKTPTALAIAKAVID--KNLKPGFLSRGYGR 86 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~--~g~~~~ilsRGYg~ 86 (338) --+|+||-++.+++++++ +|.++..++-...+ T Consensus 63 S~sG~t~~~~~~~~~ak~~~~g~~vIaiT~~~~s 96 (119) T 3i0z_A 63 ARSGNSPESLATVDLAKSLVDELYQVTITCAADG 96 (119) T ss_dssp ESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTS T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCC T ss_conf 4785878999999999985778764033058897 No 309 >>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:1-112,A:171-206) Probab=47.50 E-value=9.1 Score=18.53 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=14.6 Q ss_pred CCCCCCHHHHHHHHHHHH Q ss_conf 788874899999999852 Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338) -|+|||-++..||+.+.- T Consensus 9 pGSGKTTlAk~LA~~lg~ 26 (148) T 2rgx_A 9 PGAGKGTQAKRLAKEKGF 26 (148) T ss_dssp TTSSHHHHHHHHHHHHCC T ss_pred CCCCHHHHHHHHHHHHCC T ss_conf 999879999999998799 No 310 >>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} (A:1-114) Probab=47.32 E-value=11 Score=18.06 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=15.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) =|+|||-++..|++.+ -.+.++|. T Consensus 11 pGsGKTT~a~~L~~~~----~~~~~~~~ 34 (114) T 1ly1_A 11 PGSGKSTWAREFIAKN----PGFYNINR 34 (114) T ss_dssp TTSSHHHHHHHHHHHS----TTEEEECH T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEC T ss_conf 9999899999999848----99799851 No 311 >>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:) Probab=47.13 E-value=4.8 Score=20.48 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=11.5 Q ss_pred EEEEECCCCHHHHHHHHHHH Q ss_conf 89874155357899988740 Q gi|254780401|r 225 VLAFSGIADTEKFFTTVRQL 244 (338) Q Consensus 225 v~afsGIa~P~~F~~~L~~~ 244 (338) +++=+++=+|+.|.+.++.. T Consensus 232 vLvG~asl~~~~f~~ii~~~ 251 (256) T 1aw2_A 232 ALVGGAALDAKSFAAIAKAA 251 (256) T ss_dssp EEESGGGGCHHHHHHHHHHH T ss_pred EEECHHHCCHHHHHHHHHHH T ss_conf 99536766989999999999 No 312 >>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} (A:) Probab=47.03 E-value=11 Score=17.92 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=24.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 788874899999999852473159876045 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) -|+|||-++..|++.|.-..+....+.|+. T Consensus 34 ~GsGKsTva~~La~~lg~~~i~~~~~~~~~ 63 (211) T 1m7g_A 34 SASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211) T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEECHH T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCH T ss_conf 999989999999999998639988997538 No 313 >>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* (A:) Probab=46.96 E-value=19 Score=16.25 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=38.2 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECHHHHHHCC Q ss_conf 863898741553578999887401-000012214332348989999999975647987-998546634382 Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLG-ALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI-LVTTAKDAMRLH 290 (338) Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g-~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTTEKD~VKL~ 290 (338) +....-++-+.+=......+-... ..-.+.....+...++..|+.+...++...... ..+...|.-++. T Consensus 182 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (318) T 2r6j_A 182 GEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALT 252 (318) T ss_dssp SCCEEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHHHHHHH T ss_pred CCCCCCEEEHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHH T ss_conf 34546424599999999998348063298799718998425999999999997998828988999999998 No 314 >>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} (A:) Probab=46.63 E-value=19 Score=16.21 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 000788874899999999852473159876045787 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) +.+|||| -+=.+|++.|.++|+.+.+..|+.... T Consensus 7 LVtGatG--fiG~~lv~~L~~~g~~v~~~~r~~~~~ 40 (321) T 1e6u_A 7 FIAGHRG--MVGSAIRRQLEQRGDVELVLRTRDELN 40 (321) T ss_dssp EEETTTS--HHHHHHHHHHTTCTTEEEECCCTTTCC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEECCCHHCC T ss_conf 9987998--899999999997869899966713414 No 315 >>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} (A:) Probab=46.59 E-value=12 Score=17.62 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=45.0 Q ss_pred ECCCCCCHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-----CCCCHHHHH Q ss_conf 0788874899-9999998524731598760457877775587145678877042123322057634-----652012256 Q gi|254780401|r 54 MGGTGKTPTA-LAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-----VTSDRKIGV 127 (338) Q Consensus 54 vGGtGKTP~v-~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-----V~~~R~~~~ 127 (338) -=|||||=.- +-+...+.....+ ....+++.+...-+.++-++...++....+. .+....... T Consensus 74 ~TGSGKTlaflip~l~~~~~~~~~-----------~~~alIl~PTrELa~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (245) T 3dkp_A 74 PTGSGKTLAFSIPILMQLKQPANK-----------GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF 142 (245) T ss_dssp CTTSCHHHHHHHHHHHHHCSCCSS-----------SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT T ss_pred CCCCCEEEEEEEHHHHHHHHCCCC-----------CCEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCHHH T ss_conf 355433666510566542320478-----------835999568744132023210233321000001222222331035 Q ss_pred HHHCCCCCCEEEECCCCCCC-------C-CCCEEEEEEECC Q ss_conf 64102457479971832234-------4-123069999618 Q gi|254780401|r 128 QMLLQEGVDIIIMDDGFHSA-------D-LQADFSLIVVNS 160 (338) Q Consensus 128 ~~~~~~~~diiIlDDGfQh~-------~-l~rdl~Ivl~d~ 160 (338) ....+.++++++.-.|--.. . --+++..+++|- T Consensus 143 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~l~~v~~lVlDE 183 (245) T 3dkp_A 143 GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245) T ss_dssp STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS T ss_pred HHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEEECHH T ss_conf 67652588614421256688876402212243101440011 No 316 >>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel beta-sheet flanked by 7 alpha- helices, transferase; 2.00A {Homo sapiens} (A:) Probab=46.55 E-value=9.6 Score=18.36 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=16.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH Q ss_conf 89982300078887489999999985 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338) |+.+|. -|+|||-++.+|++.|. T Consensus 7 I~i~G~---~GsGKtTla~~La~~l~ 29 (173) T 1rkb_A 7 ILLTGT---PGVGKTTLGKELASKSG 29 (173) T ss_dssp EEEECS---TTSSHHHHHHHHHHHHC T ss_pred EEEECC---CCCCHHHHHHHHHHHHC T ss_conf 989889---99998999999999979 No 317 >>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} (A:) Probab=46.54 E-value=7.7 Score=19.05 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.2 Q ss_pred CCCCCCHHHHHHHHHHHHCCCC Q ss_conf 7888748999999998524731 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~ 76 (338) -|+|||-++..|++.|....+. T Consensus 15 ~GsGKTT~a~~La~~l~~~~i~ 36 (194) T 1qf9_A 15 PGSGKGTQCANIVRDFGWVHLS 36 (194) T ss_dssp TTSSHHHHHHHHHHHHCCEEEE T ss_pred CCCCHHHHHHHHHHHHCCCEEC T ss_conf 9998899999999996994576 No 318 >>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus aureus subsp} (A:) Probab=46.49 E-value=19 Score=16.20 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=38.3 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH Q ss_conf 68638987415535789998874010000122143323489899999999756479879985466343 Q gi|254780401|r 221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMR 288 (338) Q Consensus 221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VK 288 (338) .+.....+.-+.+-......+-..+.. ......-.....+..++.++..++......++....+..+ T Consensus 164 ~~~~~~~~v~~~d~a~~~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (289) T 3e48_A 164 AGDGRINYITRNDIARGVIAIIKNPDT-WGKRYLLSGYSYDXKELAAILSEASGTEIKYEPVSLETFA 230 (289) T ss_dssp CTTCEEEEECHHHHHHHHHHHHHCGGG-TTCEEEECCEEEEHHHHHHHHHHHHTSCCEECCCCHHHHH T ss_pred EECCCCCCEEHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHH T ss_conf 202455852499999999986508555-4407996698788899999999998980238978999999 No 319 >>2hun_A 336AA long hypothetical DTDP-glucose 4,6- dehydratase; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii OT3} (A:) Probab=46.29 E-value=20 Score=16.18 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=27.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| -+=.+|++.|.++|+.+.+++|.... T Consensus 7 lItGatG--~iG~~lv~~Ll~~g~~v~~~~~~~~~ 39 (336) T 2hun_A 7 LVTGGMG--FIGSNFIRYILEKHPDWEVINIDKLG 39 (336) T ss_dssp EEETTTS--HHHHHHHHHHHHHCTTCEEEEEECCC T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 9966877--89999999999669997899995798 No 320 >>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:1-177) Probab=46.13 E-value=9.8 Score=18.29 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=23.9 Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 643388988998230007888748999999998524 Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) +..+.|--++-.|- -|||||-++..+++.+... T Consensus 33 ~~~~~~~~~Ll~Gp---pG~GKT~~A~~la~~~~~~ 65 (177) T 1jr3_A 33 SLGRIHHAYLFSGT---RGVGKTSIARLLAKGLNCE 65 (177) T ss_dssp HHTCCCSEEEEESC---TTSSHHHHHHHHHHHHSCT T ss_pred HCCCCCCEEEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 86997723765799---9987999999999996787 No 321 >>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4} (A:) Probab=46.01 E-value=9.7 Score=18.34 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=28.9 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 88998230007888748999999998524731598760 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) ||=+|.|.+.|.+|. +||+.+..+|+.|..+++ T Consensus 19 ~VR~ItN~SSGk~G~-----~lA~~~~~~Ga~V~li~g 51 (232) T 2gk4_A 19 SVRSITNHSTGHLGK-----IITETLLSAGYEVCLITT 51 (232) T ss_dssp SSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEC T ss_pred CCCEECCCCCHHHHH-----HHHHHHHHCCCEEEEEEC T ss_conf 821668369669999-----999999978998999955 No 322 >>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108) Probab=45.98 E-value=20 Score=16.14 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=24.3 Q ss_pred EEEECCCCHHH-HHHHHHHHCCCCCCCCC--------CCCCC-CCCHHHHHHHHHHHHHCCCEEEECHHHH Q ss_conf 98741553578-99988740100001221--------43323-4898999999997564798799854663 Q gi|254780401|r 226 LAFSGIADTEK-FFTTVRQLGALIEQCYS--------FGDHA-HLSDKKIAYLLDQAQQKGLILVTTAKDA 286 (338) Q Consensus 226 ~afsGIa~P~~-F~~~L~~~g~~i~~~~~--------fpDHh-~ys~~dl~~i~~~a~~~~~~iiTTEKD~ 286 (338) +++.|-|...+ +....+++|++++-.-. ..||+ .-+-.|.+.+.+.|++.+...||+|=.+ T Consensus 22 ilIlG~Gqla~~l~~aa~~lG~~~~~~d~~~~~pa~~~ad~~~~~~~~D~~~i~~~a~~~~~D~I~~e~e~ 92 (108) T 2dwc_A 22 ILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEA 92 (108) T ss_dssp EEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSC T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCC T ss_conf 99999789999999999987998999979898857774565897899999999999987399999968887 No 323 >>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* (A:1-178) Probab=45.82 E-value=20 Score=16.13 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=25.0 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 00078887489999999985247315987604 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) +.+|||| -+=.+|++.|.+.|+.+.++.|- T Consensus 7 lVTGatG--~iG~~l~~~L~~~g~~v~~~~~~ 36 (178) T 2z1m_A 7 LITGIRG--QDGAYLAKLLLEKGYEVYGADRR 36 (178) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECSC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECC T ss_conf 9978886--89999999999783989999799 No 324 >>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A (A:) Probab=45.62 E-value=13 Score=17.52 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=40.4 Q ss_pred HHHHHHHHHHCCCCEEEE-EECC----CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC-CCCC--CHHH-HHHHHCCC Q ss_conf 999999985247315987-6045----787777558714567887704212332205763-4652--0122-56641024 Q gi|254780401|r 63 ALAIAKAVIDKNLKPGFL-SRGY----GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT-IVTS--DRKI-GVQMLLQE 133 (338) Q Consensus 63 v~~l~~~l~~~g~~~~il-sRGY----g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv-~V~~--~R~~-~~~~~~~~ 133 (338) +..+.+.+.+ +-+..+| -|.= .+...|...+. ..+.-+....+.+.-++ ++|. .|.. ++..+.+. T Consensus 6 ~~e~~~~l~~-~~~~~iiDvR~~~e~~~~hipga~~~p-----~~~~~~~~~~~~~~~~iv~~c~~g~rs~~~a~~l~~~ 79 (103) T 3eme_A 6 TDELKNKLLE-SKPVQIVDVRTDEETAXGYIPNAKLIP-----XDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEAN 79 (103) T ss_dssp HHHHHHGGGS-SSCCEEEECSCHHHHTTCBCTTCEECC-----GGGGGGCGGGCCTTSEEEEECSSSSHHHHHHHHHHTT T ss_pred HHHHHHHHHC-CCCEEEEECCCHHHHHCCCCCCCCCCC-----CCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHC T ss_conf 9999999867-998299988882563357258861212-----2000112211012345100579965499999999986 Q ss_pred CCCEEEECCCCCCCCCC Q ss_conf 57479971832234412 Q gi|254780401|r 134 GVDIIIMDDGFHSADLQ 150 (338) Q Consensus 134 ~~diiIlDDGfQh~~l~ 150 (338) +.++.+||+|+..+.-. T Consensus 80 G~~v~~l~GG~~aW~~~ 96 (103) T 3eme_A 80 GIDAVNVEGGXHAWGDE 96 (103) T ss_dssp TCEEEEETTHHHHHCSS T ss_pred CCCEEEECCHHHHHHHC T ss_conf 99779977819999987 No 325 >>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} (A:1-178) Probab=45.61 E-value=14 Score=17.27 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=24.9 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 889889982300078887489999999985247315987604 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) .|--++..|- -|||||-++.++|..+. .....++-| T Consensus 44 ~~~g~Ll~Gp---PGtGKT~~a~a~A~~~~---~~~~~~~~~ 79 (178) T 1xwi_A 44 PWRGILLFGP---PGTGKSYLAKAVATEAN---NSTFFSISS 79 (178) T ss_dssp CCSEEEEESS---SSSCHHHHHHHHHHHTT---SCEEEEEEC T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHCC---CCCEEEEEH T ss_conf 9980688798---99988999999998707---884246567 No 326 >>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* (A:165-385) Probab=45.38 E-value=20 Score=16.14 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=18.9 Q ss_pred CCCCCCHHHHHHHHHHH--HCCCCEEEEE Q ss_conf 78887489999999985--2473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVI--DKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~--~~g~~~~ils 81 (338) =|+|||=+...++..+. ..|.++.|+. T Consensus 23 tGsGKT~~~~~~~~~~l~~~~~~~vli~~ 51 (221) T 2o0j_A 23 RQLGKTTVVAIFLAHFVCFNKDKAVGILA 51 (221) T ss_dssp SSSCHHHHHHHHHHHHHHSSSSCEEEEEE T ss_pred CCCCEEEEHHHHHHHHHHHCCCCEEEEEE T ss_conf 54441222388999998706663147860 No 327 >>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:1-166) Probab=45.37 E-value=10 Score=18.16 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=20.0 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 88998230007888748999999998524 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .++..|.- |+|||.++.++|..+... T Consensus 44 ~~ll~Gp~---G~GKt~~a~~~a~~l~~~ 69 (166) T 1sxj_B 44 HMIISGMP---GIGKTTSVHCLAHELLGR 69 (166) T ss_dssp CEEEECST---TSSHHHHHHHHHHHHHGG T ss_pred EEEEECCC---CCCHHHHHHHHHHHHCCC T ss_conf 69988949---998999999999986699 No 328 >>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} (A:) Probab=45.18 E-value=20 Score=16.06 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=16.6 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 63465201225664102457479971 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338) -|..+.+-.+|...+.+..+|+||+| T Consensus 27 ~v~~a~~~~~al~~l~~~~~dliilD 52 (120) T 2a9o_A 27 EVVTAFNGREALEQFEAEQPDIIILD 52 (120) T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEC T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEC T ss_conf 99998787999999983699789842 No 329 >>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* (A:1-271) Probab=45.12 E-value=19 Score=16.24 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=18.8 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 2300078887489999999985247315987 Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) |=+.-=|+|||-+...+++.... ++.+..+ T Consensus 75 ~I~a~~g~GKT~ll~~ia~~~~~-~~~v~~~ 104 (271) T 2obl_A 75 GIFAGSGVGKSTLLGMICNGASA-DIIVLAL 104 (271) T ss_dssp EEEECTTSSHHHHHHHHHHHSCC-SEEEEEE T ss_pred CCCCCCCCCHHHHHHHHCCCCCC-CCEEEEE T ss_conf 34688887688886542010248-8630046 No 330 >>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:1-111,A:185-343) Probab=45.01 E-value=11 Score=18.06 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=59.5 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE----CCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HCCC---C Q ss_conf 8998230007888748999999998524731598760----457877775587145678877042123322-0576---3 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR----GYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RRAV---T 117 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR----GYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~~p---v 117 (338) |+.+| .-|+|||-++.+||+.|... +++- -|.+-..+ +...+..+....+..+- ...+ . T Consensus 5 I~I~G---ptGsGKStla~~LA~~l~~~-----~i~~Ds~q~y~~~~i~-----t~k~~~~e~~~~~~~~~~~~~~~~~~ 71 (270) T 3eph_A 5 IVIAG---TTGVGKSQLSIQLAQKFNGE-----VINSDSMQVYKDIPII-----TNKHPLQEREGIPHHVMNHVDWSEEY 71 (270) T ss_dssp EEEEE---CSSSSHHHHHHHHHHHHTEE-----EEECCTTTTBSSCTTT-----TTCCCGGGTTTCCEESCSCBCTTSCC T ss_pred EEEEC---CCCHHHHHHHHHHHHHCCCE-----EEECCHHHHCCCCCEE-----ECCCCHHHHHCCCEEEECCCCCCCCC T ss_conf 99989---77045999999999987998-----9910388740999558-----78999999918996146133799872 Q ss_pred CCCCCHHHHHHHHCC--CCCCEEEECCCCCCC--CCCC---EEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH Q ss_conf 465201225664102--457479971832234--4123---069999618433566553761365210025566514544 Q gi|254780401|r 118 IVTSDRKIGVQMLLQ--EGVDIIIMDDGFHSA--DLQA---DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAIL 190 (338) Q Consensus 118 ~V~~~R~~~~~~~~~--~~~diiIlDDGfQh~--~l~r---dl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi 190 (338) -++.-+..+...+.+ ......|+.+|---+ .+-+ .++++++ +.--|..-|++-+. +|+|..+ T Consensus 72 ~~~~f~~~a~~~~~~i~~~~~~~IivgGt~~yl~~~~~~l~~~~~l~~--------~l~~~r~~L~~ri~---~Rvd~M~ 140 (270) T 3eph_A 72 YSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRLKFDTLFL--------WLYSKPEPLFQRLD---DRVDDML 140 (270) T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCSSEEEEE--------EEECCHHHHHHHHH---HHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCC--------CCCCCHHHHHHHHH---HHHHHHH T ss_conf 899999999986545540457328967986159988630222122222--------45788788999999---9999999 Q ss_pred HCCCCHHH Q ss_conf 20441245 Q gi|254780401|r 191 YVGNKKNV 198 (338) Q Consensus 191 ~~~~~~~~ 198 (338) -.|--++. T Consensus 141 ~~Gl~~Ev 148 (270) T 3eph_A 141 ERGALQEI 148 (270) T ss_dssp HTTHHHHH T ss_pred HCCHHHHH T ss_conf 77769999 No 331 >>2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis} (A:) Probab=44.93 E-value=20 Score=16.03 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=21.9 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 898899823000788874899999999852473159 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338) .+-||++||=...|.=..-..-+|++.|.+.|+++. T Consensus 5 rv~ii~~GdEi~~g~~~d~n~~~l~~~l~~~G~~v~ 40 (160) T 2g4r_A 5 SARIVVVSSRAAAGVYTDDCGPIIAGWLEQHGFSSV 40 (160) T ss_dssp CEEEEEECHHHHTTSSCCCHHHHHHHHHHHTTCCCC T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCE T ss_conf 799999468330488488469999999987798102 No 332 >>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:190-271) Probab=44.91 E-value=20 Score=16.03 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=40.7 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 578999887401000012214332348989999999975647987998546 Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK 284 (338) Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK 284 (338) -+.|--..+.+|++.+..+....+..-|.+++.++.+.+++++...|-+|. T Consensus 8 H~af~Yf~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~if~e~ 58 (82) T 2o1e_A 8 HTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEE 58 (82) T ss_dssp SCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSS T ss_pred CCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 213666887468447640235652221335799999876525886899948 No 333 >>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} (A:) Probab=44.86 E-value=17 Score=16.55 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=21.1 Q ss_pred HHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 7404643388988998230007888748999999998524 Q gi|254780401|r 34 MKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 34 ~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) ++........+.|+.||+ +|+|||- |...+... T Consensus 9 ~~~~~~~~~~~kivivG~---~~vGKTs----Li~r~~~~ 41 (183) T 1moz_A 9 FDKLWGSNKELRILILGL---DGAGKTT----ILYRLQIG 41 (183) T ss_dssp HGGGTTCSSCEEEEEEEE---TTSSHHH----HHHHTCCS T ss_pred HHHHHCCCCEEEEEEECC---CCCCHHH----HHHHHHCC T ss_conf 999717896799999999---9998899----99287459 No 334 >>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* (A:149-282) Probab=44.83 E-value=17 Score=16.60 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=30.9 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 8898899823000788874899999999852473159876045 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) .+.|+|. ++.||+|...+...+++.|.+.+....++..|= T Consensus 7 ~~~~~V~---vs~Gs~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 46 (134) T 3hbm_A 7 KKKYDFF---ICXGGTDIKNLSLQIASELPKTKIISIATSSSN 46 (134) T ss_dssp CCCEEEE---EECCSCCTTCHHHHHHHHSCTTSCEEEEECTTC T ss_pred CCCCCEE---EEEECCCCCHHHHHHHHHHHHHHCCCEEEECCH T ss_conf 2442226---554035530000112110122101210010120 No 335 >>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:1-208) Probab=44.60 E-value=11 Score=18.02 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=22.7 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 8988998230007888748999999998524731598760 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) +--|+..|- -|||||-++.++|+.+. .....++- T Consensus 30 ~~~iLL~GP---pG~GKT~l~~~~a~~~~---~~~~~~~~ 63 (208) T 2fna_A 30 APITLVLGL---RRTGKSSIIKIGINELN---LPYIYLDL 63 (208) T ss_dssp SSEEEEEES---TTSSHHHHHHHHHHHHT---CCEEEEEG T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEEE T ss_conf 998999839---99979999999999879---97699997 No 336 >>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:273-289,A:381-393,A:607-763) Probab=44.49 E-value=21 Score=15.99 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 899999999852473159876 Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 61 P~v~~l~~~l~~~g~~~~ils 81 (338) |-|....+.|++.|+++.++| T Consensus 31 ~~v~~~I~~l~~agi~v~iiT 51 (187) T 3ixz_A 31 ATVPDAVLKCRTAGIRVIMVT 51 (187) T ss_pred HHHHHHHHHHHHCCCEEEEEC T ss_conf 669999999998899199988 No 337 >>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} (A:) Probab=44.40 E-value=15 Score=16.90 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.0 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHH Q ss_conf 898899823000788874899999999 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKA 69 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~ 69 (338) .+.|+.||+ +|+|||-++..++.- T Consensus 23 ~~KIvlvG~---~~vGKTSli~r~~~~ 46 (192) T 2fg5_A 23 ELKVCLLGD---TGVGKSSIVCRFVQD 46 (192) T ss_dssp EEEEEEEEC---TTSSHHHHHHHHHHC T ss_pred EEEEEEECC---CCCCHHHHHHHHHHC T ss_conf 879999997---991999999999849 No 338 >>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} (A:) Probab=44.33 E-value=13 Score=17.36 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=41.2 Q ss_pred HHHHHHHHHHCCCCEEEE-EEC---C-CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC-CCCCCHHH---HHHHHCCC Q ss_conf 999999985247315987-604---5-787777558714567887704212332205763-46520122---56641024 Q gi|254780401|r 63 ALAIAKAVIDKNLKPGFL-SRG---Y-GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT-IVTSDRKI---GVQMLLQE 133 (338) Q Consensus 63 v~~l~~~l~~~g~~~~il-sRG---Y-g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv-~V~~~R~~---~~~~~~~~ 133 (338) +..+.+.+++ +-++.+| -|- | .+...+...+. ..+.-+...-+.+..++ +.|..-.+ ++..+.+. T Consensus 6 ~~~l~~~l~~-~~~~~iiDvR~~~e~~~~hi~ga~~ip-----~~~~~~~~~~~~~~~~iv~~c~~g~rs~~aa~~l~~~ 79 (100) T 3foj_A 6 VTELKEKILD-ANPVNIVDVRTDQETAXGIIPGAETIP-----XNSIPDNLNYFNDNETYYIICKAGGRSAQVVQYLEQN 79 (100) T ss_dssp HHHHHHGGGS-SSCCEEEECSCHHHHTTCBCTTCEECC-----GGGGGGCGGGSCTTSEEEEECSSSHHHHHHHHHHHTT T ss_pred HHHHHHHHHC-CCCEEEEECCCHHHHHCCCCCCCCCCC-----HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHC T ss_conf 9999999876-998289979978999729378745484-----0344553123678862999879986999999999985 Q ss_pred CCCEEEECCCCCCCCCC Q ss_conf 57479971832234412 Q gi|254780401|r 134 GVDIIIMDDGFHSADLQ 150 (338) Q Consensus 134 ~~diiIlDDGfQh~~l~ 150 (338) +.++.+|++|+|-+.-. T Consensus 80 G~~v~~l~GG~~~W~~~ 96 (100) T 3foj_A 80 GVNAVNVEGGXDEFGDE 96 (100) T ss_dssp TCEEEEETTHHHHHCSS T ss_pred CCCEEEECCHHHHHHHC T ss_conf 99879977869999985 No 339 >>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} (A:) Probab=44.31 E-value=15 Score=17.03 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=17.3 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 889889982300078887489999999 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) -.+.|+.||+ +|+|||-++..+.. T Consensus 5 ~~~KiviiG~---~gvGKTsll~r~~~ 28 (170) T 1yzq_A 5 RKFKLVFLGE---QSVGKTSLITRFMY 28 (170) T ss_dssp --CEEEEEES---TTSSHHHHHHHHHH T ss_pred CEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 6789999994---99899999999985 No 340 >>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehydrogenase, reductase, NADP binding; 1.40A {Emericella nidulans} (A:) Probab=44.27 E-value=21 Score=15.96 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=26.7 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+||||- +=..|++.|.++|+.|.+++|.-.. T Consensus 9 lVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (352) T 1xgk_A 9 AVVGATGR--QGASLIRVAAAVGHHVRAQVHSLKG 41 (352) T ss_dssp EEESTTSH--HHHHHHHHHHHTTCCEEEEESCSCS T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 99898708--9999999999687959999778530 No 341 >>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} (X:) Probab=44.24 E-value=21 Score=15.96 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=27.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| =+=-+|++.|.++|+.+.++.|.-.. T Consensus 5 LVTGatG--fIG~~lv~~Ll~~g~~v~~~~~~~~~ 37 (322) T 2p4h_X 5 CVTGGTG--FLGSWIIKSLLENGYSVNTTIRADPE 37 (322) T ss_dssp EEESTTS--HHHHHHHHHHHHTTCEEEEECCCC-- T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9989987--89999999999785989999878974 No 342 >>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} (A:) Probab=44.15 E-value=14 Score=17.30 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=28.8 Q ss_pred HHHCCHHHHHHHCCC-CCCCCCHHH---HHHHHCCCCCCEEEECCCCCCCCC Q ss_conf 770421233220576-346520122---566410245747997183223441 Q gi|254780401|r 102 YDVGDEPLLLARRAV-TIVTSDRKI---GVQMLLQEGVDIIIMDDGFHSADL 149 (338) Q Consensus 102 ~~vGDEp~lla~~~p-v~V~~~R~~---~~~~~~~~~~diiIlDDGfQh~~l 149 (338) .+.-+..-.+.+.-+ |++|..-.. ++..+.+.|.++.+||+|++.+.- T Consensus 43 ~~l~~~~~~~~~~~~iv~~c~~g~~s~~a~~~L~~~G~~v~~l~GG~~~W~~ 94 (108) T 3gk5_A 43 SELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIE 94 (108) T ss_dssp HHHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHH T ss_conf 1245665441014342221698549999999999849988998795999998 No 343 >>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCSG, PSI-2, midwest center for structural genomics; 2.00A {Thermoplasma acidophilum} (A:) Probab=44.14 E-value=21 Score=15.95 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=19.2 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 98899823000788874899999999852473159 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338) +-||++|+=.+-|.=-.-.--+|++.|.+.|+.+. T Consensus 6 v~ii~~GdEl~~G~~~D~n~~~l~~~l~~~G~~v~ 40 (172) T 3kbq_A 6 ASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVR 40 (172) T ss_dssp EEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEE T ss_pred EEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCEE T ss_conf 89999751151770466199999999998799177 No 344 >>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} (A:) Probab=44.11 E-value=9.4 Score=18.42 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=30.1 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9889982300078887489999999985247315987604 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) .||=+|.|.+.|.+|. ++|+++..+|++|.++++. T Consensus 54 ~~VR~ItN~SsG~~G~-----~iAe~~~~~G~~Vi~~~g~ 88 (313) T 1p9o_A 54 RPVRFLDNFSSGRRGA-----TSAEAFLAAGYGVLFLYRA 88 (313) T ss_dssp SCSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEET T ss_pred CCCEEECCCCCHHHHH-----HHHHHHHHCCCEEEEEECC T ss_conf 9833862788608899-----9999999869989999368 No 345 >>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* (A:) Probab=43.65 E-value=8.3 Score=18.81 Aligned_cols=27 Identities=22% Similarity=-0.018 Sum_probs=21.2 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-++.-++....+.+-.+.+++ T Consensus 29 pGsGKT~l~~q~~~~~~~~~~~~~~~~ 55 (220) T 2cvh_A 29 YASGKTTLALQTGLLSGKKVAYVDTEG 55 (220) T ss_dssp TTSSHHHHHHHHHHHHCSEEEEEESSC T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 999899999999998535774267870 No 346 >>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} (A:) Probab=43.62 E-value=11 Score=17.88 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=15.6 Q ss_pred CCCCCCHHHHHHHHHHHHC Q ss_conf 7888748999999998524 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338) -|||||-++..|++.|... T Consensus 13 ~GsGKtTla~~La~~l~~~ 31 (186) T 3cm0_A 13 PGAGKGTQASRLAQELGFK 31 (186) T ss_dssp TTSCHHHHHHHHHHHHTCE T ss_pred CCCCHHHHHHHHHHHHCCE T ss_conf 9998799999999985987 No 347 >>1x1r_A RAS-related protein M-RAS; GTP-binding, signaling protein; HET: GDP; 1.30A {Mus musculus} (A:) Probab=43.58 E-value=13 Score=17.55 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=17.3 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 33889889982300078887489999999 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ....+.|+.||+ +|.|||-++..++. T Consensus 10 ~~~~~KivivGd---~~VGKTsLi~r~~~ 35 (178) T 1x1r_A 10 NLPTYKLVVVGD---GGVGKSALTIQFFQ 35 (178) T ss_dssp CCCEEEEEEECC---TTSSHHHHHHHHHH T ss_pred CCCEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 897179999999---99098999999973 No 348 >>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (E:1-192) Probab=43.51 E-value=21 Score=15.89 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=28.5 Q ss_pred HHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 9740464338898899823000788874899999999852473 Q gi|254780401|r 33 LMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338) Q Consensus 33 ~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338) ...+....+.+-.++-.|.= |+|||.++..+|+.+..... T Consensus 26 L~~~l~~~~~~~~lLl~Gp~---G~GKt~~A~~la~~l~~~~~ 65 (192) T 1sxj_E 26 LKSLSDQPRDLPHLLLYGPN---GTGKKTRCMALLESIFGPGV 65 (192) T ss_dssp HHTTTTCTTCCCCEEEECST---TSSHHHHHHTHHHHHSCTTC T ss_pred HHHHHHCCCCCCEEEEECCC---CCCHHHHHHHHHHHHCCCCC T ss_conf 99999679987869888979---99899999999998659863 No 349 >>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A (A:1-258) Probab=43.23 E-value=22 Score=15.86 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=19.2 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECHHHH Q ss_conf 4898999999997564798799854663 Q gi|254780401|r 259 HLSDKKIAYLLDQAQQKGLILVTTAKDA 286 (338) Q Consensus 259 ~ys~~dl~~i~~~a~~~~~~iiTTEKD~ 286 (338) .++...+....+.+.+.+.+++.||=-+ T Consensus 195 ~~~~~~~~~~~~~~~~~~~P~~~~E~g~ 222 (258) T 2whl_A 195 GGDANTVRSNIDRVIDQDLALVIGEFGH 222 (258) T ss_dssp TSSHHHHHHHHHHHHTTTCCEEEEEECC T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 7857999999999986699889985577 No 350 >>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3; HDHD3, structural genomics, structural genomics consortium, SGC; 1.55A {Homo sapiens} (A:1-17,A:102-263) Probab=43.17 E-value=16 Score=16.84 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=20.1 Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 48999999998524731598760457 Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) .|=+..+.+.|+++|++++|+|-+.. T Consensus 24 ~pgv~e~L~~Lk~~G~~l~ivSn~~~ 49 (179) T 3k1z_A 24 LDGAEDTLRECRTRGLRLAVISNFDR 49 (179) T ss_dssp CTTHHHHHHHHHHTTCEEEEEESCCT T ss_pred CCCHHHHHHHHHHCCCCEEEECCCHH T ss_conf 81699999999986992564145215 No 351 >>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} (A:) Probab=43.07 E-value=22 Score=15.84 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 000788874899999999852473159876045 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) +.+|||| =+=.+|++.|.++|+.|.++.|.= T Consensus 9 lVTGatG--fIG~~lv~~Ll~~G~~V~~~~r~~ 39 (341) T 3enk_A 9 LVTGGAG--YIGSHTAVELLAHGYDVVIADNLV 39 (341) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECCCS T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9974886--899999999997849799997888 No 352 >>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* (A:1-184) Probab=42.84 E-value=22 Score=15.82 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=22.3 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 0078887489999999985247315987604578 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) .+||||- +--+|++.|.++|+.+.++.|.-.+ T Consensus 25 ItGatGf--iG~~lv~~L~~~g~~v~~~~~~~~~ 56 (184) T 2pzm_A 25 ITGGAGC--LGSNLIEHWLPQGHEILVIDNFATG 56 (184) T ss_dssp EETTTSH--HHHHHHHHHGGGTCEEEEEECCSSS T ss_pred EECCCCH--HHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9888778--9999999999785989999788877 No 353 >>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} (A:347-572) Probab=42.74 E-value=9.1 Score=18.52 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=43.7 Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCC-----CCCCEEEECCCCCHHHHCCHHH---HHH---------HCC Q ss_conf 07888748999999998524-73159876045787-----7775587145678877042123---322---------057 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRK-----SRISFRVDLEKHSAYDVGDEPL---LLA---------RRA 115 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~-----~~~~~~v~~~~~~~~~vGDEp~---lla---------~~~ 115 (338) --|+|||-+.-.|+...+.- |--..=++=+|... ..+...-....-......+.-. ++. ++. T Consensus 44 ~NGaGKSTllk~i~Gl~~p~~G~i~~~~~i~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 123 (226) T 3bk7_A 44 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV 123 (226) T ss_dssp CTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH T ss_conf 87765550435642886688784023574000112233051210566555404100214589999999859915532662 Q ss_pred CCCCCCCHHH-HHHHHCCCCCCEEEECCCCCCCC Q ss_conf 6346520122-56641024574799718322344 Q gi|254780401|r 116 VTIVTSDRKI-GVQMLLQEGVDIIIMDDGFHSAD 148 (338) Q Consensus 116 pv~V~~~R~~-~~~~~~~~~~diiIlDDGfQh~~ 148 (338) -..-+..|.+ ++..+.-.+++++|||.-..+.- T Consensus 124 ~~LSGGekqRv~iAral~~~p~illlDEPts~LD 157 (226) T 3bk7_A 124 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 157 (226) T ss_dssp GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC T ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 6489999999999999964999899979987789 No 354 >>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} (A:) Probab=42.47 E-value=9.8 Score=18.29 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=12.3 Q ss_pred CCCCCCHHHHHHHHHH Q ss_conf 7888748999999998 Q gi|254780401|r 55 GGTGKTPTALAIAKAV 70 (338) Q Consensus 55 GGtGKTP~v~~l~~~l 70 (338) -|+|||-++..|++.+ T Consensus 11 ~GsGKTT~a~~L~~~l 26 (189) T 2bdt_A 11 AGVGKSTTCKRLAAQL 26 (189) T ss_dssp TTSSHHHHHHHHHHHS T ss_pred CCCCHHHHHHHHHHHH T ss_conf 9989899999999981 No 355 >>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} (A:) Probab=42.43 E-value=14 Score=17.16 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=18.4 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHH Q ss_conf 4338898899823000788874899999999 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~ 69 (338) +....+.|+.||+ +|.|||-++..++.- T Consensus 5 ~~~~~~KiviiGd---~~vGKTsll~r~~~~ 32 (181) T 2fn4_A 5 PPSETHKLVVVGG---GGVGKSALTIQFIQS 32 (181) T ss_dssp CSSCEEEEEEEEC---TTSSHHHHHHHHHHS T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHC T ss_conf 9887458999997---993989999999729 No 356 >>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} (A:) Probab=42.43 E-value=9.9 Score=18.28 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=17.8 Q ss_pred EEEE-CCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 8998-230007888748999999998524 Q gi|254780401|r 46 VICV-GGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~ 73 (338) +|+| |. -|+|||-++..|++.|... T Consensus 17 ~I~i~G~---~GsGKtTla~~La~~l~~~ 42 (203) T 1ukz_A 17 VIFVLGG---PGAGKGTQCEKLVKDYSFV 42 (203) T ss_dssp EEEEECS---TTSSHHHHHHHHHHHSSCE T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 8999899---9998799999999985991 No 357 >>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} (A:94-285) Probab=42.43 E-value=22 Score=15.77 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=24.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 0007888748999999998524731598760 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) +=-=|+|||-+...|+..+....-++.+... T Consensus 13 iGpsGsGKSTll~~l~g~~~p~~G~v~~~~~ 43 (192) T 3dm5_A 13 VGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 43 (192) T ss_dssp ECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 2466666406889999999963982689973 No 358 >>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} (A:1-354) Probab=42.42 E-value=22 Score=15.77 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 000788874899999999852473159876045 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) +.+|||| =+=.+|++.|.++|+.+.++.|.= T Consensus 15 LVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~ 45 (354) T 1z45_A 15 LVTGGAG--YIGSHTVVELIENGYDCVVADNLS 45 (354) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCS T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9978971--899999999997869699998888 No 359 >>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} (A:) Probab=42.40 E-value=12 Score=17.67 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.5 Q ss_pred CCCCCCHHHHHHHHHHHHC Q ss_conf 7888748999999998524 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338) -|+|||-++..|++.|... T Consensus 17 ~GsGKSTla~~La~~l~~~ 35 (175) T 1knq_A 17 SGSGKSAVASEVAHQLHAA 35 (175) T ss_dssp TTSCHHHHHHHHHHHHTCE T ss_pred CCCCHHHHHHHHHHHHCCC T ss_conf 9989899999999996988 No 360 >>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} (A:) Probab=42.26 E-value=22 Score=15.76 Aligned_cols=34 Identities=18% Similarity=-0.056 Sum_probs=27.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 000788874899999999852473159876045787 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) +.+|||| =+=.+|++.|.++|+.+.++.|..... T Consensus 13 LVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~~~ 46 (357) T 1rkx_A 13 FVTGHTG--FKGGWLSLWLQTMGATVKGYSLTAPTV 46 (357) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESSCSSS T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 9968997--899999999997799899997899862 No 361 >>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A (A:27-187) Probab=42.21 E-value=22 Score=15.75 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=18.9 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 748999999998524731598760457 Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) -.|=+..+.+.|+++|++++++|.|.. T Consensus 43 ~~pg~~e~l~~L~~~g~~i~i~T~~~~ 69 (161) T 2wm8_A 43 LYPEVPEVLKRLQSLGVPGAAASRTSE 69 (161) T ss_dssp CCTTHHHHHHHHHHHTCCEEEEECCSC T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCH T ss_conf 475599999999988977995067854 No 362 >>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} (A:1-131,A:180-233) Probab=42.18 E-value=12 Score=17.60 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.7 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 988998230007888748999999998524 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .-|+.+|. -|+|||-++..|++.|.-. T Consensus 17 ~~Ivi~G~---~GsGKTTia~~La~~l~~~ 43 (185) T 1ak2_A 17 VRAVLLGP---PGAGKGTQAPKLAKNFCVC 43 (185) T ss_dssp CEEEEECC---TTSSHHHHHHHHHHHHTCE T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCE T ss_conf 47999899---9998799999999986983 No 363 >>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} (A:) Probab=42.10 E-value=22 Score=15.74 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=14.9 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCC Q ss_conf 6346520122566410245747997183 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDG 143 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDG 143 (338) -|.+..+=.+|...+.+..+|+||+|-. T Consensus 30 ~v~~a~~~~~al~~l~~~~~dliilD~~ 57 (136) T 2qzj_A 30 SIDLAYNCEEAIGKIFSNKYDLIFLEII 57 (136) T ss_dssp EEEEESSHHHHHHHHHHCCCSEEEEESE T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEECC T ss_conf 9999824889999860669868986213 No 364 >>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} (B:) Probab=42.03 E-value=8.8 Score=18.64 Aligned_cols=35 Identities=17% Similarity=0.016 Sum_probs=25.1 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89982300078887489999999985247315987604 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |+..|.. |+|||-++..|++.|....+.+..+.+- T Consensus 14 I~i~G~~---GsGKsT~a~~La~~l~~~~~~~~~~~~~ 48 (202) T 3ch4_B 14 LLFSGKR---KSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202) T ss_dssp EEEEECT---TSSHHHHHHHHHHHHCTTTEEEECTHHH T ss_pred EEEECCC---CCCHHHHHHHHHHHCCCCCEEEEEECHH T ss_conf 9998989---9899999999998549984788650358 No 365 >>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} (A:) Probab=41.99 E-value=12 Score=17.60 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=16.6 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH Q ss_conf 89982300078887489999999985 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338) |+..|- -|+|||-++..|++.|- T Consensus 7 I~i~G~---~GsGKsTia~~La~~lg 29 (175) T 1via_A 7 IVFIGF---XGSGKSTLARALAKDLD 29 (175) T ss_dssp EEEECC---TTSCHHHHHHHHHHHHT T ss_pred EEEECC---CCCCHHHHHHHHHHHHC T ss_conf 999858---99989999999999849 No 366 >>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} (A:) Probab=41.93 E-value=18 Score=16.39 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=18.9 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 9889982300078887489999999985247315 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338) +.|+.||+ +|+|||-++..++.---...+.+ T Consensus 6 ~KivivGd---~~VGKTsLi~r~~~~~f~~~~~~ 36 (199) T 2f9l_A 6 FKVVLIGD---SGVGKSNLLSRFTRNEFNLESKS 36 (199) T ss_dssp EEEEEESS---TTSSHHHHHHHHHHSCCCC---C T ss_pred EEEEEECC---CCCCHHHHHHHHHHCCCCCCCCC T ss_conf 89999999---99098999999984989887588 No 367 >>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} (A:) Probab=41.84 E-value=13 Score=17.53 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=18.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCC Q ss_conf 8998230007888748999999998524731 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338) |+..|. =|+|||-++..|++.|....+. T Consensus 6 I~i~G~---~GsGKsTla~~La~~l~~~~~~ 33 (196) T 1tev_A 6 VFVLGG---PGAGKGTQCARIVEKYGYTHLS 33 (196) T ss_dssp EEEECC---TTSSHHHHHHHHHHHHCCEEEE T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCEEC T ss_conf 999899---9999899999999986995760 No 368 >>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus} (A:) Probab=41.81 E-value=12 Score=17.56 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=14.1 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 78887489999999985 Q gi|254780401|r 55 GGTGKTPTALAIAKAVI 71 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~ 71 (338) -|+|||-++..|++.|. T Consensus 9 ~GsGKTTla~~La~~l~ 25 (168) T 2pt5_A 9 XCSGKSTVGSLLSRSLN 25 (168) T ss_dssp TTSCHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHC T ss_conf 99988999999999839 No 369 >>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} (A:1-200) Probab=41.80 E-value=11 Score=17.95 Aligned_cols=29 Identities=34% Similarity=0.326 Sum_probs=19.6 Q ss_pred CCEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 230007--88874899999999852473159876 Q gi|254780401|r 50 GGFVMG--GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 50 GNitvG--GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) |=+-.| |||||-++.++|+.+. .....++ T Consensus 66 giLl~GppGtGKT~la~ala~~~~---~~~~~i~ 96 (200) T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR---VPFITAS 96 (200) T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT---CCEEEEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CCEEEEE T ss_conf 589889899858999999997518---9469977 No 370 >>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} (A:1-114) Probab=41.68 E-value=11 Score=18.09 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=16.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 7888748999999998524731598760 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) =|+|||-++-.|++.+. .+.++|. T Consensus 11 pGsGKTT~a~~l~~~l~----~~~~~~~ 34 (114) T 1ltq_A 11 PGSGKSTWAREFIAKNP----GFYNINR 34 (114) T ss_dssp TTSSHHHHHHHHHHHST----TEEEECH T ss_pred CCCCHHHHHHHHHHHCC----CCEEECC T ss_conf 99978999999998489----9899820 No 371 >>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} (A:) Probab=41.67 E-value=23 Score=15.70 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=25.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 000788874899999999852473159876045 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) +.+||||. +=.+|++.|.++|+++.+++|.- T Consensus 25 lItGatG~--iG~~l~~~L~~~~~~v~~~~r~~ 55 (236) T 3e8x_A 25 LVVGANGK--VARYLLSELKNKGHEPVAXVRNE 55 (236) T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEESSG T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCH T ss_conf 99999778--99999999997889899995795 No 372 >>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:1-168) Probab=41.65 E-value=13 Score=17.47 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=18.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 8998230007888748999999998524 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) ++-.|- -|+|||.++.++|+.+... T Consensus 49 ~ll~Gp---pG~GKt~~a~~~a~~l~~~ 73 (168) T 1sxj_C 49 LLFYGP---PGTGKTSTIVALAREIYGK 73 (168) T ss_dssp EEEECS---SSSSHHHHHHHHHHHHHTT T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 998897---9999999999999874045 No 373 >>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} (A:) Probab=41.53 E-value=23 Score=15.68 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=41.7 Q ss_pred CCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCCCCCCHHHHHHH Q ss_conf 78887489-99999998524731598760457877775587145678877042123322057----63465201225664 Q gi|254780401|r 55 GGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTIVTSDRKIGVQM 129 (338) Q Consensus 55 GGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~V~~~R~~~~~~ 129 (338) =|||||-. ++-+...+......... ..+.+....+..+-.+...++... .++++......-.. T Consensus 89 TGsGKTlayllp~l~~l~~~~~~~~~------------~~~~p~~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (249) T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFA------------LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 156 (249) T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCE------------EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH T ss_pred CCCCCCCCCHHHHHCEECCCCCCCCC------------CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHH T ss_conf 76555311001000000135765454------------211775555555556653102446753001101101268999 Q ss_pred HCCCCCCEEEE-CCCCCC-----C-CCCCEEEEEEECC Q ss_conf 10245747997-183223-----4-4123069999618 Q gi|254780401|r 130 LLQEGVDIIIM-DDGFHS-----A-DLQADFSLIVVNS 160 (338) Q Consensus 130 ~~~~~~diiIl-DDGfQh-----~-~l~rdl~Ivl~d~ 160 (338) ..+.+++++|. --++.+ . ...+++..+++|- T Consensus 157 ~l~~~~~iii~t~~~~~~~~~~~~~~~~~~ik~lVlDE 194 (249) T 3ber_A 157 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249) T ss_dssp HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS T ss_pred HHHCCCCEEEECCCCCEECCCCCCCCCHHHCEEEEECC T ss_conf 98549976997897320024222442530011897444 No 374 >>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} (A:) Probab=41.38 E-value=12 Score=17.56 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.9 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|.|||-++..++. T Consensus 13 ~~~~KivivGd---~~VGKTSli~r~~~ 37 (179) T 1z0f_A 13 SYIFKYIIIGD---MGVGKSCLLHQFTE 37 (179) T ss_dssp SEEEEEEEECS---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 76789999999---99198999999972 No 375 >>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* (B:) Probab=41.11 E-value=12 Score=17.76 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=17.8 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|+|||-++..+++ T Consensus 10 ~~~~KivivG~---~~vGKTSli~r~~~ 34 (181) T 2efe_B 10 SINAKLVLLGD---VGAGKSSLVLRFVK 34 (181) T ss_dssp CEEEEEEEECC---TTSCHHHHHHHHHH T ss_pred CCCEEEEEECC---CCCCHHHHHHHHHH T ss_conf 40549999899---99699999999985 No 376 >>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} (A:) Probab=41.09 E-value=11 Score=17.82 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=18.6 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 899823000788874899999999852473 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338) |+..|. -|+|||-++..|++.+....+ T Consensus 6 I~i~G~---~GsGKtTla~~La~~l~~~~i 32 (178) T 1qhx_A 6 IILNGG---SSAGKSGIVRCLQSVLPEPWL 32 (178) T ss_dssp EEEECC---TTSSHHHHHHHHHHHSSSCEE T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCEE T ss_conf 999899---999989999999998489979 No 377 >>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} (A:1-108) Probab=41.06 E-value=23 Score=15.63 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=12.5 Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 3465201225664102457479971 Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338) |..+.+=.+|...+.+..+|+||+| T Consensus 30 v~~a~~~~~al~~l~~~~~dliilD 54 (108) T 3c3m_A 30 PITAFSGEECLEALNATPPDLVLLD 54 (108) T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE T ss_pred EEEECCCHHHHHHHHHHCCCCEEEC T ss_conf 9983353118998864233204411 No 378 >>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} (A:) Probab=41.00 E-value=13 Score=17.38 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=17.5 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|.|||-++..++. T Consensus 19 ~~~~KiviiGd---~gVGKTsli~r~~~ 43 (191) T 2a5j_A 19 SYLFKYIIIGD---TGVGKSCLLLQFTD 43 (191) T ss_dssp CEEEEEEEESS---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 65479999999---99698999999971 No 379 >>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A (A:) Probab=40.79 E-value=13 Score=17.35 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=18.5 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 988998230007888748999999998524 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .-|+.+|. -|+|||-++..|++.|.-. T Consensus 10 ~~I~i~G~---~GsGKsTla~~La~~l~~~ 36 (196) T 2c95_A 10 NIIFVVGG---PGSGKGTQCEKIVQKYGYT 36 (196) T ss_dssp CEEEEEEC---TTSSHHHHHHHHHHHHCCE T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCE T ss_conf 58999899---9998799999999985984 No 380 >>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} (A:1-218) Probab=40.77 E-value=12 Score=17.56 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=19.6 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHH Q ss_conf 898899823000788874899999999852 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338) ..||+-.|-= |||||-++..+++.+.. T Consensus 45 ~~~iLl~G~p---GtGKt~lAr~i~~~l~~ 71 (218) T 1g8p_A 45 IGGVLVFGDR---GTGKSTAVRALAALLPE 71 (218) T ss_dssp GCCEEEECCG---GGCTTHHHHHHHHHSCC T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHCCC T ss_conf 9718997899---95699999999986676 No 381 >>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus} (A:1-185,A:283-301) Probab=40.72 E-value=12 Score=17.76 Aligned_cols=32 Identities=31% Similarity=0.191 Sum_probs=21.1 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) --|+-.|- -|||||=++.++|+.+. ..+..++ T Consensus 50 kgiLl~GP---pGTGKT~la~ala~~~~---~~~~~i~ 81 (204) T 3cf0_A 50 KGVLFYGP---PGCGKTLLAKAIANECQ---ANFISIK 81 (204) T ss_dssp SEEEEECS---SSSSHHHHHHHHHHHTT---CEEEEEC T ss_pred CEEEEECC---CCCCEEHHHHHHHHHHC---CCEEEEE T ss_conf 63687679---99960111343244518---7279988 No 382 >>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} (B:) Probab=40.60 E-value=13 Score=17.55 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=17.2 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ ||.|||-++..++. T Consensus 11 ~~~~KiviiGd---~gVGKTsLi~rf~~ 35 (223) T 3cpj_B 11 DLLFKIVLIGD---SGVGKSNLLSRFTK 35 (223) T ss_dssp CEEEEEEEESC---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 66889999999---99299999999971 No 383 >>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* (A:1-145,A:250-415) Probab=40.58 E-value=17 Score=16.58 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=18.1 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) =|||||=+.+..+. +.|.++.|++ T Consensus 41 tGsGKT~va~~~i~---~~~~~vlilv 64 (311) T 2d7d_A 41 TGTGKTFTVSNLIK---EVNKPTLVIA 64 (311) T ss_dssp TTSCHHHHHHHHHH---HHCCCEEEEC T ss_pred CCCHHHHHHHHHHH---HHCCCEEEEC T ss_conf 87499999999999---8499989991 No 384 >>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} (A:1-209) Probab=40.58 E-value=18 Score=16.37 Aligned_cols=92 Identities=13% Similarity=-0.040 Sum_probs=54.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH Q ss_conf 78887489999999985247315987604578777755871456788770421233220576----34652012256641 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML 130 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~ 130 (338) =|+|||-.- ..-.+. .+.+..|++ +....+.++.++...+....+ +..+.......... T Consensus 49 TGsGKT~~~--~~~~~~-~~~~~lii~--------------Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209) T 1oyw_A 49 TGGGKSLCY--QIPALL-LNGLTVVVS--------------PLISLXKDQVDQLQANGVAAACLNSTQTREQQLEVXTGC 111 (209) T ss_dssp CHHHHHHHH--HHHHHH-SSSEEEEEC--------------SCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH T ss_pred CCCHHHHHH--HHHHHH-HCCCEEEEC--------------CHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHH T ss_conf 984699999--999998-089689988--------------769999999999998497599995888799999999741 Q ss_pred CCCCCCEEEECCC-----CC-CCCCCCEEEEEEECCCCC Q ss_conf 0245747997183-----22-344123069999618433 Q gi|254780401|r 131 LQEGVDIIIMDDG-----FH-SADLQADFSLIVVNSHRG 163 (338) Q Consensus 131 ~~~~~diiIlDDG-----fQ-h~~l~rdl~Ivl~d~~~~ 163 (338) ...++++++.--| .+ .....+.+..+++|--+- T Consensus 112 ~~~~~~ivi~tp~~l~~~~~~~~~~l~~i~~vViDEad~ 150 (209) T 1oyw_A 112 RTGQIRLLYIAPERLXLDNFLEHLAHWNPVLLAVDEAHC 150 (209) T ss_dssp HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG T ss_pred HCCCCEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCEE T ss_conf 238851886173887655555554303425640454301 No 385 >>2zkl_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, isomerase; 2.61A {Staphylococcus aureus} (A:1-130) Probab=40.42 E-value=24 Score=15.56 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=26.0 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0007888748999999998524731598760457 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) +.+||||.. =.+|++.|.++|+.+.+.+|--. T Consensus 4 lVtGasGfi--G~~lv~~L~~~g~~v~~~~~~~~ 35 (130) T 2zkl_A 4 VITGAKGFV--GKNLKADLTSTTDHHIFEVHRQT 35 (130) T ss_dssp EEETTTSHH--HHHHHHHHHHHCCCEEEEECTTC T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCC T ss_conf 999999779--99999999857994999967989 No 386 >>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} (A:) Probab=40.41 E-value=14 Score=17.28 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=17.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 8998230007888748999999998524 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) |+.+|. -|+|||-++..|++.|... T Consensus 23 I~i~G~---~GsGKsTla~~La~~l~~~ 47 (201) T 2cdn_A 23 VLLLGP---PGAGKGTQAVKLAEKLGIP 47 (201) T ss_dssp EEEECC---TTSSHHHHHHHHHHHHTCC T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCE T ss_conf 999899---9999899999999997990 No 387 >>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomics, PSI, protein structure initiative; HET: G1P; 2.00A {Escherichia coli K12} (A:1-16,A:94-206) Probab=40.36 E-value=24 Score=15.56 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=48.0 Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECC-------CCCHHHHC-----CHHHHHHH-C---C--CCCCCC Q ss_conf 48999999998524731598760457877775587145-------67887704-----21233220-5---7--634652 Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLE-------KHSAYDVG-----DEPLLLAR-R---A--VTIVTS 121 (338) Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~-------~~~~~~vG-----DEp~lla~-~---~--pv~V~~ 121 (338) .|=+..+.+.|+++|++++++|.++.........-... --+..+++ .|.+..+. . . .+++-. T Consensus 16 ~Pgv~e~L~~L~~~g~~i~i~Tn~~~~~~~~~~~~~~gl~~~fd~v~~~~~~~~~KP~~~~~~~~~~~~g~~p~~~i~Ig 95 (129) T 2b0c_A 16 NPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFD 95 (129) T ss_dssp THHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEEEEE T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 92067899999865982676316208999998752225354543898721355420267899999997398921089990 Q ss_pred CHHHHHHHHCCCCCCEEEECCCCC Q ss_conf 012256641024574799718322 Q gi|254780401|r 122 DRKIGVQMLLQEGVDIIIMDDGFH 145 (338) Q Consensus 122 ~R~~~~~~~~~~~~diiIlDDGfQ 145 (338) |....+..+.+.|...|...+|-+ T Consensus 96 D~~~di~~a~~~Gi~~i~v~~~~~ 119 (129) T 2b0c_A 96 DNADNIEGANQLGITSILVKDKTT 119 (129) T ss_dssp SCHHHHHHHHTTTCEEEECCSTTH T ss_pred CCHHHHHHHHHCCCEEEEECCCCC T ss_conf 898889999986998999999652 No 388 >>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A* (A:1-184) Probab=40.28 E-value=14 Score=17.26 Aligned_cols=19 Identities=42% Similarity=0.312 Sum_probs=16.2 Q ss_pred CCCCCCHHHHHHHHHHHHC Q ss_conf 7888748999999998524 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338) -|||||=++.++|..+... T Consensus 53 pGtGKT~la~ala~~~~~~ 71 (184) T 2r62_A 53 PGTGKTLLAKAVAGEAHVP 71 (184) T ss_dssp SCSSHHHHHHHHHHHHTCC T ss_pred CCCCCHHHHHHHHHHCCCC T ss_conf 9987016999999874998 No 389 >>2o2x_A Hypothetical protein; NP_103874.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.50A {Mesorhizobium loti} (A:) Probab=40.27 E-value=24 Score=15.55 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=44.0 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEECHHHHHHCCCCCCCCHHHHCCEEEEE Q ss_conf 155357899988740100001221433234898999999997564798--799854663438233344111220517887 Q gi|254780401|r 230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL--ILVTTAKDAMRLHKRPGRAEEIFAKSMVIE 307 (338) Q Consensus 230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~--~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~ 307 (338) .--+|+.|...++.+|+.....+..-|+ ..|+.. |++.+. ..|.+..+...- ..... T Consensus 136 ~Kp~p~~~~~~~~~lg~~p~~~v~vgDs----~~Di~a----A~~~G~~~i~v~~~~~~~~~-------------l~~~~ 194 (218) T 2o2x_A 136 RKPNPGXLVEAGKRLALDLQRSLIVGDK----LADXQA----GKRAGLAQGWLVDGEAAVQP-------------GFAIR 194 (218) T ss_dssp STTSCHHHHHHHHHHTCCGGGCEEEESS----HHHHHH----HHHTTCSEEEEETCCCEEET-------------TEEEE T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCC----HHHHHH----HHHCCCCEEEEECCCCCCCC-------------CCCCC T ss_conf 3541268999998738994103785796----888999----99879948999379865677-------------75456 Q ss_pred EEEEECCHHHHHHHHHHHH Q ss_conf 6989578789999999999 Q gi|254780401|r 308 VDIVFENPDDLTNLVEMTV 326 (338) Q Consensus 308 i~~~~~~~~~l~~~l~~~i 326 (338) ....+++-.+|...|++.. T Consensus 195 ~~~~i~~l~el~~~l~~~~ 213 (218) T 2o2x_A 195 PLRDSSELGDLLAAIETLG 213 (218) T ss_dssp EESSHHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHHHH T ss_conf 7641407776999999998 No 390 >>1o51_A Hypothetical protein TM0021; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: ADP; 2.50A {Thermotoga maritima} (A:) Probab=40.17 E-value=23 Score=15.66 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=24.5 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 7489999999985247315987604578 Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) .-|+..||++.+++.|..=+.+-||.-| T Consensus 28 g~pl~~~il~~~~~~Gi~GaTv~rgi~G 55 (114) T 1o51_A 28 GKPLFEYLVKRAYELGXKGVTVYRGIXG 55 (114) T ss_dssp TEEHHHHHHHHHHHTTCSCCEEEECSCC T ss_pred CEEHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 5399999999999879981799930255 No 391 >>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* (A:) Probab=40.16 E-value=14 Score=17.20 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=16.4 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.||.||+ +|.|||-++..+++ T Consensus 9 ~~~~KivliGd---~gVGKTsll~rf~~ 33 (195) T 3bc1_A 9 DYLIKFLALGD---SGVGKTSVLYQYTD 33 (195) T ss_dssp SEEEEEEEECS---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 76899999998---99598999999983 No 392 >>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} (A:) Probab=39.98 E-value=12 Score=17.68 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.0 Q ss_pred CCCCCCHHHHHHHHHH Q ss_conf 7888748999999998 Q gi|254780401|r 55 GGTGKTPTALAIAKAV 70 (338) Q Consensus 55 GGtGKTP~v~~l~~~l 70 (338) -|+|||-++..|++.+ T Consensus 13 ~GsGKsTla~~La~~~ 28 (173) T 1kag_A 13 MGAGKSTIGRQLAQQL 28 (173) T ss_dssp TTSCHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHH T ss_conf 9998899999999995 No 393 >>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} (A:) Probab=39.92 E-value=22 Score=15.77 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=19.0 Q ss_pred HCCCCCCCCCEEEECCEEECCCCCCHHHHHHH Q ss_conf 04643388988998230007888748999999 Q gi|254780401|r 36 RGQRLHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338) Q Consensus 36 ~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338) .......++.|+.||+ +|+|||-++..+. T Consensus 9 ~~~~~~~~~kivivG~---~~vGKTSli~r~~ 37 (181) T 1fzq_A 9 LKSAPDQEVRILLLGL---DNAGKTTLLKQLA 37 (181) T ss_dssp CSSCCSSCEEEEEEES---TTSSHHHHHHHHC T ss_pred CCCCCCCCCEEEEECC---CCCCHHHHHHHHH T ss_conf 3026888668999999---9989999999996 No 394 >>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:1-99,A:196-225) Probab=39.91 E-value=16 Score=16.79 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=27.0 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEEC------CCCCC----CCCCCEEEEEEECCC Q ss_conf 465201225664102457479971------83223----441230699996184 Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMD------DGFHS----ADLQADFSLIVVNSH 161 (338) Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlD------DGfQh----~~l~rdl~Ivl~d~~ 161 (338) ..+.|=.++.+.+.+..+|+||+| ||++- ++...+..|+++.+. T Consensus 31 ~~a~~g~eal~~i~~~~pDiiilDi~LP~~dGleli~~Ik~~~p~~~IIvlS~~ 84 (129) T 3c3w_A 31 GEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY 84 (129) T ss_dssp EEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS T ss_pred EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCC T ss_conf 997999999999986699879982568999963143322220456444444345 No 395 >>3h0k_A UPF0200 protein SSO1041; adenylate, kinase, structural genomics, PSI-2, protein structure initiative; 3.25A {Sulfolobus solfataricus} (A:) Probab=39.76 E-value=15 Score=16.91 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=13.1 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 0788874899999999852473159 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPG 78 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338) .-|||||- +++.|.+.|+.+. T Consensus 8 ~~GsGKsT----~a~~L~~~~~~~~ 28 (178) T 3h0k_A 8 MPGSGKSE----FAKLLKERGAKVI 28 (178) T ss_dssp CTTSCHHH----HHHHHHHTSCEEE T ss_pred CCCCCHHH----HHHHHHHCCCCEE T ss_conf 99999999----9999998799499 No 396 >>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} (A:) Probab=39.76 E-value=12 Score=17.75 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=22.2 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 43388988998230007888748999999998524 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) ....+.-++-.| -||||||-+...|++.+-.. T Consensus 54 ~~~~~~~~~l~G---~~g~GKstl~~~l~~~~g~~ 85 (212) T 1tue_A 54 GTPKKNCLVFCG---PANTGKSYFGMSFIHFIQGA 85 (212) T ss_dssp TCTTCSEEEEES---CGGGCHHHHHHHHHHHHTCE T ss_pred CCCCCCEEEEEC---CCCCCHHHHHHHHHHHHCCE T ss_conf 898751899988---99855889999999984772 No 397 >>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:1-125) Probab=39.74 E-value=24 Score=15.49 Aligned_cols=20 Identities=5% Similarity=-0.125 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHCCCCEEEE Q ss_conf 89999999985247315987 Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 61 P~v~~l~~~l~~~g~~~~il 80 (338) +....+++.+++.|+.+.++ T Consensus 21 ~~~~~l~~~a~~~g~~~~~~ 40 (125) T 1kjq_A 21 ELGKEVAIECQRLGVEVIAV 40 (125) T ss_dssp HHHHHHHHHHHTTTCEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEE T ss_conf 99999999999879989999 No 398 >>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1, structural genomics, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} (A:1-15,A:86-207) Probab=39.72 E-value=23 Score=15.70 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=52.1 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHC Q ss_conf 0788874899999999852473159876045787777558714567887704212332205--76346520122566410 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLL 131 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~ 131 (338) ..||==.|-+.-+.+.|+++|++++|+|.++..-.. .....|-.++.-.-. ..+...+...+....+. T Consensus 11 ~~~~~l~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~----------~l~~~~l~~~f~~i~~s~~~~~~Kp~p~~~~~~l 80 (137) T 2go7_A 11 LDGTLLXPGAREVLAWADESGIQQFIYTHKGNNAFT----------ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLL 80 (137) T ss_dssp TBTTTECTTHHHHHHHHHHTTCEEEEECSSCTHHHH----------HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHH T ss_pred CCCCCCCCHHHHHHHCCCCCCCCHHHHCCHHHHHHH----------HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 899776625777653111222210332000577777----------6642012212222223322222102578789999 Q ss_pred -CC---CCCEEEECCCCCCCCCCCEEEEEEECCCCC Q ss_conf -24---574799718322344123069999618433 Q gi|254780401|r 132 -QE---GVDIIIMDDGFHSADLQADFSLIVVNSHRG 163 (338) Q Consensus 132 -~~---~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~ 163 (338) +. ..+++..+|...+....+...+-.+-..++ T Consensus 81 ~~~~~~~~~~l~IgD~~~Di~aA~~aG~~~i~v~~~ 116 (137) T 2go7_A 81 DKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLES 116 (137) T ss_dssp HHHTCCGGGEEEEESSHHHHHHHHHHTCEEEESSCC T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHCCCEEEEECCC T ss_conf 995899771799957999999999869969998579 No 399 >>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, lyase; HET: NDP GDP; 1.80A {Arabidopsis thaliana} (A:) Probab=39.65 E-value=24 Score=15.48 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=26.5 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| =+=.+|++.|.++|+.+.++.|.-.+ T Consensus 32 LITGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~~ 64 (381) T 1n7h_A 32 LITGITG--QDGSYLTEFLLGKGYEVHGLIRRSSN 64 (381) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCCSS T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9937862--89999999999785989999788865 No 400 >>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} (A:) Probab=39.61 E-value=12 Score=17.56 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=15.0 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 9889982300078887489999999 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) +.|+.||+ +|.|||-++..+.+ T Consensus 4 ~KiviiGd---~~vGKTsli~~~~~ 25 (172) T 2erx_A 4 YRVAVFGA---GGVGKSSLVLRFVK 25 (172) T ss_dssp EEEEEECC---TTSSHHHHHHHHHT T ss_pred CEEEEECC---CCCCHHHHHHHHHC T ss_conf 18999997---99799999999960 No 401 >>2qjw_A Uncharacterized protein XCC1541; NP_636912.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} (A:) Probab=39.35 E-value=19 Score=16.18 Aligned_cols=84 Identities=8% Similarity=-0.060 Sum_probs=45.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCCCCCEEEECCCCCHHHHC-CHHHHHHH---CCCC-CCCCCH--HHH Q ss_conf 78887489999999985247315987-6045787777558714567887704-21233220---5763-465201--225 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL-SRGYGRKSRISFRVDLEKHSAYDVG-DEPLLLAR---RAVT-IVTSDR--KIG 126 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg~~~~~~~~v~~~~~~~~~vG-DEp~lla~---~~pv-~V~~~R--~~~ 126 (338) ||+.-++....+++.|.++||.+..+ .||||++..... ..+..+.. |....+.. ..|+ ++|.+- ..+ T Consensus 14 ~~~~~~~~~~~~~~~l~~~G~~v~~~D~~G~G~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a 88 (176) T 2qjw_A 14 ESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQ-----LGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIA 88 (176) T ss_dssp TCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGGGCT-----TCCHHHHHHHHHHHHHHHHTTSCEEEEEETHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEE T ss_conf 989874399999999997799598640003677789977-----588899999999999970789998999863652466 Q ss_pred HHHHCCCCCCEEEECCC Q ss_conf 66410245747997183 Q gi|254780401|r 127 VQMLLQEGVDIIIMDDG 143 (338) Q Consensus 127 ~~~~~~~~~diiIlDDG 143 (338) ..++.+......++-.+ T Consensus 89 ~~~a~~~~~~~~v~~~~ 105 (176) T 2qjw_A 89 AQVSLQVPTRALFLXVP 105 (176) T ss_dssp HHHHTTSCCSEEEEESC T ss_pred EECCCCCCCCCCCCCCC T ss_conf 41002576433010343 No 402 >>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} (A:) Probab=39.29 E-value=15 Score=17.08 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=17.6 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHH Q ss_conf 8899823000788874899999999852 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVID 72 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338) -|+..|- -|+|||-++..|++.+.- T Consensus 14 ~I~i~G~---~GsGKtT~a~~La~~~~~ 38 (199) T 2bwj_A 14 IIFIIGG---PGSGKGTQCEKLVEKYGF 38 (199) T ss_dssp EEEEEEC---TTSSHHHHHHHHHHHHTC T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCC T ss_conf 8999899---999989999999998499 No 403 >>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} (A:) Probab=39.23 E-value=18 Score=16.45 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=16.8 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 33889889982300078887489999999 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ....+.|+.||+ +|.|||-++..++. T Consensus 25 ~~~~~KivilGd---~~VGKTsli~r~~~ 50 (196) T 2atv_A 25 KSAEVKLAIFGR---AGVGKSALVVRFLT 50 (196) T ss_dssp --CCEEEEEECC---TTSSHHHHHHHHHH T ss_pred CCCCEEEEEECC---CCCCHHHHHHHHHH T ss_conf 898659999899---99799999999961 No 404 >>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} (A:) Probab=39.22 E-value=21 Score=15.97 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=21.8 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 33889889982300078887489999999985247315 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338) +...+.|+.||. +|+|||-++..++.---...+.+ T Consensus 20 ~~~~~KivivGd---~~vGKTSli~r~~~~~f~~~~~~ 54 (191) T 3dz8_A 20 FDYMFKLLIIGN---SSVGKTSFLFRYADDTFTPAFVS 54 (191) T ss_dssp EEECEEEEEEES---TTSSHHHHHHHHHHHTTCCCEEE T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHCCCCCCCCCC T ss_conf 573669999999---99398999999972988863266 No 405 >>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} (A:) Probab=39.22 E-value=25 Score=15.44 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=26.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 000788874899999999852473159876045787 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) +.+||||.. =..|++.|.++|+.+.+++|.-... T Consensus 9 lVtGatG~i--G~~i~~~L~~~g~~v~~~~~~~~~~ 42 (215) T 2a35_A 9 LLAGATGLT--GEHLLDRILSEPTLAKVIAPARKAL 42 (215) T ss_dssp EEECTTSHH--HHHHHHHHHHCTTCCEEECCBSSCC T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEEEECCCC T ss_conf 998799589--9999999997869689999727720 No 406 >>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} (A:1-169) Probab=39.12 E-value=15 Score=17.05 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=15.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH Q ss_conf 89982300078887489999999985 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338) |+.+|- -|+|||-++..|++.+. T Consensus 5 I~i~G~---~GsGKtTiA~~La~~~~ 27 (169) T 2iyv_A 5 AVLVGL---PGSGKSTIGRRLAKALG 27 (169) T ss_dssp EEEECS---TTSSHHHHHHHHHHHHT T ss_pred EEEECC---CCCCHHHHHHHHHHHHC T ss_conf 999889---99988999999999959 No 407 >>3ipo_A Putative thiosulfate sulfurtransferase YNJE; triple-domain rhodanese; HET: PE4; 2.40A {Escherichia coli k-12} PDB: 3ipp_A (A:1-118) Probab=38.89 E-value=16 Score=16.79 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=23.5 Q ss_pred CCCCC-C--CCHHHHHHHHCCCCC-CEEEECCCCCCCC Q ss_conf 76346-5--201225664102457-4799718322344 Q gi|254780401|r 115 AVTIV-T--SDRKIGVQMLLQEGV-DIIIMDDGFHSAD 148 (338) Q Consensus 115 ~pv~V-~--~~R~~~~~~~~~~~~-diiIlDDGfQh~~ 148 (338) .+|+| | ..|..++..+.+.+. ++.++|+||+.++ T Consensus 78 ~~vi~~C~~G~rs~~a~~l~~~G~~~v~~l~GG~~~W~ 115 (118) T 3ipo_A 78 APVALYGNDKDVDAVKTRLQKAGLTHISILSDALSEPS 115 (118) T ss_dssp SCEEEESSHHHHHHHHHHHHHTTCCCEEEBTTTTSCGG T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHH T ss_conf 81899968734799999999828972799316513323 No 408 >>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} (A:) Probab=38.69 E-value=14 Score=17.30 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=17.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCC Q ss_conf 89982300078887489999999985247 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338) |+..|- -|+|||-++..|++.|.... T Consensus 8 I~i~G~---~GsGKTTia~~La~~l~~~~ 33 (183) T 2vli_A 8 IWINGP---FGVGKTHTAHTLHERLPGSF 33 (183) T ss_dssp EEEECC---C----CHHHHHHHHHSTTCE T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCE T ss_conf 999899---99149999999999819996 No 409 >>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (A:95-371) Probab=38.69 E-value=23 Score=15.64 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=43.9 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC-----CHH Q ss_conf 230007888748999999998524731598760457877775587145678877042123322057634652-----012 Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS-----DRK 124 (338) Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~-----~R~ 124 (338) |=+.--|+|||-+...+++......-.+.+.-=|=++.. + ..-.++.=++. .+.+-+-|+-.. .|. T Consensus 73 ~I~g~~g~GKT~Ll~~i~~~~~~~~~~~v~~~iGer~~e-----v---~e~~~~~~~~~-~~~~t~vv~~ts~~~~~~r~ 143 (277) T 1fx0_A 73 LIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASS-----V---AQVVTNFQERG-AMEYTIVVAETADSPATLQY 143 (277) T ss_dssp BEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHH-----H---HHHHHHTGGGT-GGGSEEEEEECTTSCGGGTT T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECHHH-----H---HHHHHHHCCCC-CCCCCCEECCCCCCCHHHHH T ss_conf 513589996778999988765278858999972113899-----9---99999640278-63233100246667788888 Q ss_pred HH-------HHHHCCCCCC-EEEECCCCCCCCCCCEEEEEE Q ss_conf 25-------6641024574-799718322344123069999 Q gi|254780401|r 125 IG-------VQMLLQEGVD-IIIMDDGFHSADLQADFSLIV 157 (338) Q Consensus 125 ~~-------~~~~~~~~~d-iiIlDDGfQh~~l~rdl~Ivl 157 (338) .+ |++....+-| ++++||=..|-+-.|.+...+ T Consensus 144 ~~~~~a~~~AE~~r~~G~~Vll~~Dsltr~a~A~reis~~~ 184 (277) T 1fx0_A 144 LAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLL 184 (277) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC T ss_conf 88888989999999646772699618589999999999862 No 410 >>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} (A:152-290) Probab=38.58 E-value=25 Score=15.37 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=24.3 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEEC Q ss_conf 89889982300078887489999999985247-315987604 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRG 83 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRG 83 (338) ..|+|. ..||||=||+.-.+-..++... .....+-=| T Consensus 5 ~~~~il----iagG~GitP~~s~l~~~~~~~~~~~~v~l~~~ 42 (139) T 2r6h_A 5 DAEXLY----IGGGAGXAPLRAQILHLFRTLKTGRKVSYWYG 42 (139) T ss_dssp SCEEEE----EEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEE T ss_pred CCCEEE----EECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 763578----84275136388999999873478861999706 No 411 >>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} (A:1-59,A:109-215) Probab=38.57 E-value=12 Score=17.57 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=25.7 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 89889982300078887489999999985247315987 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) .-.||+|.++. |.|||-.++.++..|++ +++-.+ T Consensus 26 ~~~~~~~~~~~--~~gk~~~~~~~~~~~~~--~~~~~~ 59 (166) T 3lnc_A 26 VGVILVLSSPS--GCGKTTVANKLLEKQKN--NIVKSV 59 (166) T ss_dssp CCCEEEEECSC--C----CHHHHHHC------CEEECC T ss_pred CCEEEEEECCC--CCCHHHHHHHHHHHCCC--CEEEEE T ss_conf 98499998989--98999999999964987--678624 No 412 >>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} (A:) Probab=38.52 E-value=15 Score=16.95 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.9 Q ss_pred CCCCCCHHHHHHHHHHHH Q ss_conf 788874899999999852 Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338) -|+|||-++..|++.|.. T Consensus 11 ~GsGKsT~a~~La~~l~~ 28 (173) T 1e6c_A 11 RGCGMTTVGRELARALGY 28 (173) T ss_dssp TTSSHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHCC T ss_conf 999889999999999699 No 413 >>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} (A:) Probab=38.28 E-value=26 Score=15.34 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=29.0 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 8899823000788874899999999852473159876045787 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) ||=+|.|.+.|-+|. +||+.+..+|..|..+++--.-. T Consensus 24 ~VR~ItN~SSGk~G~-----~lA~~~~~~Ga~V~li~g~~~~~ 61 (226) T 1u7z_A 24 PVRYISDHSSGKMGF-----AIAAAAARRGANVTLVSGPVSLP 61 (226) T ss_dssp SSEEEEECCCSHHHH-----HHHHHHHHTTCEEEEEECSCCCC T ss_pred CCCEECCCCCCHHHH-----HHHHHHHHCCCEEEEEECCCCCC T ss_conf 822426178219999-----99868987897199884145456 No 414 >>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560} (A:) Probab=38.11 E-value=13 Score=17.32 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=22.0 Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 88998230007888748999999998524731598760 Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338) Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338) ++|+|.-. -|+|||-++..|++.|....+....+.| T Consensus 7 ~~I~i~G~--~GsGKsTia~~La~~l~~~~~~~d~~~~ 42 (201) T 3fdi_A 7 IIIAIGRE--FGSGGHLVAKKLAEHYNIPLYSKELLDE 42 (201) T ss_dssp CEEEEEEC--TTSSHHHHHHHHHHHTTCCEECHHHHHH T ss_pred EEEEECCC--CCCCHHHHHHHHHHHHCCCEECCHHHHH T ss_conf 58996489--9888799999999993993886689999 No 415 >>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} (A:122-186) Probab=38.04 E-value=22 Score=15.79 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.5 Q ss_pred CCHHHHHHHHHHHHCCCCE Q ss_conf 7489999999985247315 Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKP 77 (338) Q Consensus 59 KTP~v~~l~~~l~~~g~~~ 77 (338) +||+...|++.|+++|++- T Consensus 17 ~t~lS~~iskdLKkrGFkF 35 (65) T 2jg6_A 17 VDDTATQLSKDLKQYGFKF 35 (65) T ss_dssp CCHHHHHHHHHHHTTTCCS T ss_pred CCHHHHHHHHHHHHCCCEE T ss_conf 8889999999998577854 No 416 >>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* (A:1-72) Probab=37.95 E-value=16 Score=16.79 Aligned_cols=21 Identities=29% Similarity=0.451 Sum_probs=15.9 Q ss_pred CCEEEECCEEECCCCCCHHHHHHH Q ss_conf 988998230007888748999999 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIA 67 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~ 67 (338) +.|+.||+ +|.|||-++..+. T Consensus 3 ~Ki~lvGd---~~vGKTsl~~~~~ 23 (72) T 2zej_A 3 XKLXIVGN---TGSGKTTLLQQLX 23 (72) T ss_dssp CEEEEESC---TTSSHHHHHHHHT T ss_pred CEEEEECC---CCCCHHHHHHHHH T ss_conf 18999995---9977999999997 No 417 >>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} (A:1-115,A:163-216) Probab=37.90 E-value=16 Score=16.84 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=17.5 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 788874899999999852473159 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPG 78 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ 78 (338) -|+|||-++..|++.|.-..+.+. T Consensus 9 pGsGKSTlak~La~~l~~~~i~~~ 32 (169) T 3fb4_A 9 PGAGKGTQAEQIIEKYEIPHISTG 32 (169) T ss_dssp TTSSHHHHHHHHHHHHCCCEEEHH T ss_pred CCCCHHHHHHHHHHHHCCEEECHH T ss_conf 999879999999999799678599 No 418 >>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} (A:) Probab=37.54 E-value=15 Score=17.02 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=19.0 Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 078887489999999985247315987 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338) .-|+|||-++..|++.|...++....+ T Consensus 13 ~~GsGKsT~a~~L~~~l~~~~i~~~~~ 39 (193) T 2rhm_A 13 HPATGKTTLSQALATGLRLPLLSKDAF 39 (193) T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCEEEHHHE T ss_conf 899999999999999969948733230 No 419 >>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} (A:) Probab=37.27 E-value=16 Score=16.76 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=19.9 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 3889889982300078887489999999985247315 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338) ...+.|+.||. +|.|||-++..+..---...+.+ T Consensus 8 ~~~~KiviiGd---~~VGKTsli~r~~~~~F~~~~~~ 41 (186) T 2bme_A 8 DFLFKFLVIGN---AGTGKSCLLHQFIEKKFKDDSNH 41 (186) T ss_dssp SEEEEEEEEES---TTSSHHHHHHHHHHSSCCTTCCC T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHHCCCCCCCCC T ss_conf 86889999998---99188999999980988865554 No 420 >>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} (A:) Probab=37.04 E-value=18 Score=16.46 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=18.3 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 33889889982300078887489999999 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ....+.|+.||+ +|+|||-++..+.. T Consensus 13 ~~~~~KivlvG~---~~vGKTsli~r~~~ 38 (211) T 3bbp_A 13 PLRKFKLVFLGE---QSVGKTSLITRFMY 38 (211) T ss_dssp ----CEEEEEES---TTSSHHHHHHHHHT T ss_pred CCCEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 876689999998---99799999999973 No 421 >>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} (A:) Probab=37.01 E-value=13 Score=17.36 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=18.2 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 33889889982300078887489999999 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) +...+.|+.||+ +|.|||-++..++. T Consensus 5 ~d~~~KvvivGd---~~VGKTsli~r~~~ 30 (203) T 1zbd_A 5 FDYXFKILIIGN---SSVGKTSFLFRYAD 30 (203) T ss_dssp CSEEEEEEEECS---TTSSHHHHHHHHHT T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHC T ss_conf 115359999999---99198999999970 No 422 >>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} (A:97-232) Probab=36.97 E-value=27 Score=15.20 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=23.7 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 8898899823000788874899999999852473159876 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ..-|+|.| +||||=||+..++-..++..-.....+- T Consensus 5 ~~~~~ili----agG~GIaP~~s~l~~~~~~~~~~~v~l~ 40 (136) T 1qfj_A 5 EERPMILI----AGGTGFSYARSILLTALARNPNRDITIY 40 (136) T ss_dssp SSSCEEEE----EETTCHHHHHHHHHHHHHHCTTCCEEEE T ss_pred CCCCEEEE----ECCCCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 46758999----3697513199999999980999989999 No 423 >>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} (A:241-367) Probab=36.95 E-value=22 Score=15.85 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=24.3 Q ss_pred CCCC-CCCCHHH---HHHHHCCCCCCEEEECCCCCCCCCC Q ss_conf 7634-6520122---5664102457479971832234412 Q gi|254780401|r 115 AVTI-VTSDRKI---GVQMLLQEGVDIIIMDDGFHSADLQ 150 (338) Q Consensus 115 ~pv~-V~~~R~~---~~~~~~~~~~diiIlDDGfQh~~l~ 150 (338) .+|+ .|..-.+ ++..+.+.+.++.+||+|++.+.-. T Consensus 83 ~~iv~~c~~g~~s~~~a~~l~~~G~~v~~l~GG~~aW~~~ 122 (127) T 1yt8_A 83 ARLVLVDDDGVRANXSASWLAQXGWQVAVLDGLSEADFSE 122 (127) T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGGCCB T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHC T ss_conf 7599994897168888999986266500014643210101 No 424 >>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161) Probab=36.95 E-value=15 Score=17.01 Aligned_cols=33 Identities=3% Similarity=-0.219 Sum_probs=28.4 Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC Q ss_conf 111686389874155357899988740100001 Q gi|254780401|r 218 FDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQ 250 (338) Q Consensus 218 ~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~ 250 (338) ....+++++.++|-..-+-+.+.|++.|+.+.. T Consensus 80 ~~~~~~~vl~~~g~~~~~~L~~~L~~~G~~v~~ 112 (114) T 1wcw_A 80 LPQGRGVAALQLYGKPLPLLENALAERGYRVLP 112 (114) T ss_dssp SCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEE T ss_pred HCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEE T ss_conf 435884899970798817999999977997669 No 425 >>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} (A:) Probab=36.87 E-value=16 Score=16.83 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=16.8 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...++||.||+ +|.|||-++...+. T Consensus 24 ~~~~KiviiGd---~~VGKTsLi~r~~~ 48 (201) T 2ew1_A 24 DFLFKIVLIGN---AGVGKTCLVRRFTQ 48 (201) T ss_dssp SEEEEEEEEES---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHC T ss_conf 57989999998---98788999998836 No 426 >>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* (A:89-324) Probab=36.79 E-value=9.6 Score=18.38 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=22.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|+|||-++..++......+.+++.++ T Consensus 28 pG~GKT~l~~~~~~~~~~~~~~~~~~~ 54 (236) T 2z43_A 28 FGSGKTQLCHQLSVNVQLPPEKGGLSG 54 (236) T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSC T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 887199999999999998776447786 No 427 >>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} (A:) Probab=36.78 E-value=17 Score=16.68 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=16.8 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|.|||-++..+++ T Consensus 27 ~~~~KiviiGd---~~VGKTSLi~r~~~ 51 (191) T 1oix_A 27 DYLFKVVLIGD---SGVGKSNLLSRFTR 51 (191) T ss_dssp SEEEEEEEEEC---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 68979999998---99298999999973 No 428 >>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} (A:) Probab=36.75 E-value=27 Score=15.18 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=24.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 00078887489999999985247315987604 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) +.+||||- +=.+|++.|.++|+++.++.|. T Consensus 8 lItGatG~--iG~~l~~~Ll~~g~~v~~~~~~ 37 (253) T 1xq6_A 8 LVTGASGR--TGQIVYKKLKEGSDKFVAKGLV 37 (253) T ss_dssp EEESTTSH--HHHHHHHHHHHTTTTCEEEEEE T ss_pred EEECCCCH--HHHHHHHHHHHCCCCEEEEEEE T ss_conf 99898658--9999999999769947999970 No 429 >>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} (A:1-38,A:209-240,A:336-384) Probab=36.70 E-value=27 Score=15.17 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 89999999985247315987604 Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRG 83 (338) |.-..+|..|.++|++|.|+-|+ T Consensus 13 ~aG~~~A~~La~~G~kVlVIEkr 35 (119) T 2bi7_A 13 FSGAVIGRQLAEKGHQVHIIDQR 35 (119) T ss_dssp HHHHHHHHHHHTTTCEEEEEESS T ss_pred HHHHHHHHHHHHCCCCEEEEECC T ss_conf 99999999998689968999779 No 430 >>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} (A:) Probab=36.67 E-value=27 Score=15.17 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=26.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 00078887489999999985247315987604 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) +.+||++..-+=..+|+.|.+.|.++.+..|- T Consensus 13 lITGas~~~GIG~aiA~~la~~G~~Vv~~~r~ 44 (265) T 1qsg_A 13 LVTGVASKLSIAYGIAQAMHREGAELAFTYQN 44 (265) T ss_dssp EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 99899985018999999999869999999588 No 431 >>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} (A:) Probab=36.64 E-value=16 Score=16.78 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=44.1 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC Q ss_conf 88988998230007888748999999998524731598760457877775587145678877042123322057634652 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS 121 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~ 121 (338) ..|-.||-||+ ..+|++..+.+.+.. ..++.|+|=|....+++ -..+....+..-+-.+. T Consensus 9 ~~VLFVC~~N~-----~RS~mAEal~~~~~~---~~~~~sag~~~~~~~~v------------~~~a~~~l~~~gid~~~ 68 (150) T 2wmy_A 9 DSILVICTGNI-----CRSPIGERLLRRLLP---SKKINSAGVGALVDHTA------------DESAIRVAEKNGLCLKG 68 (150) T ss_dssp CEEEEEESSSS-----SHHHHHHHHHHHHCT---TSEEEEEETTCCTTCCC------------CHHHHHHHHHTTCCCTT T ss_pred CCEEEEECCCH-----HHHHHHHHHHHHHCC---CCCCEEEEEECCCCCCC------------CHHHHHHHHHCCCCCCC T ss_conf 80899908957-----799999999997353---36866889853679989------------80789989980988220 Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCCCC Q ss_conf 0122566410245747997183223441 Q gi|254780401|r 122 DRKIGVQMLLQEGVDIIIMDDGFHSADL 149 (338) Q Consensus 122 ~R~~~~~~~~~~~~diiIlDDGfQh~~l 149 (338) .+.+......-..+|+||.-|--|+..+ T Consensus 69 ~~~~~l~~~~~~~~D~Ii~m~~~~~~~l 96 (150) T 2wmy_A 69 HRGTKFTSALARQYDLLLVMEYSHLEQI 96 (150) T ss_dssp CCCCBCCHHHHTTCSEEEESCHHHHHHH T ss_pred CCCCCCCCCCCCCCCEEEECCHHHHHHH T ss_conf 1023443002456889998798899999 No 432 >>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} (A:) Probab=36.57 E-value=17 Score=16.60 Aligned_cols=18 Identities=22% Similarity=-0.040 Sum_probs=14.6 Q ss_pred CCCCCCHHHHHHHHHHHH Q ss_conf 788874899999999852 Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338) =|+|||-++..||+.|.- T Consensus 9 pGsGKtT~a~~La~~~~~ 26 (214) T 1e4v_A 9 PVAGKGTQAQFIMEKYGI 26 (214) T ss_dssp TTSSHHHHHHHHHHHHCC T ss_pred CCCCHHHHHHHHHHHHCC T ss_conf 999879999999998798 No 433 >>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} (A:145-467) Probab=36.43 E-value=27 Score=15.14 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=15.6 Q ss_pred HCCCCCCEEEECCCC-CCCCCCCEEEEEEEC Q ss_conf 102457479971832-234412306999961 Q gi|254780401|r 130 LLQEGVDIIIMDDGF-HSADLQADFSLIVVN 159 (338) Q Consensus 130 ~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d 159 (338) +.+.+..+++.+|++ .+..+.+|.-+..=+ T Consensus 197 v~~~G~~~~~W~D~l~~~~~l~~~~ii~~W~ 227 (323) T 2gjx_A 197 VSSYGKGYVVWQEVFDNKVKIQPDTIIQVWR 227 (323) T ss_dssp HHTTTCEEEEEHHHHHTTCCCCTTCEEEECC T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCEEEEEC T ss_conf 9975984685023446777789986377633 No 434 >>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structural protein; 2.41A {Rattus norvegicus} (A:1-21,A:182-334) Probab=36.35 E-value=27 Score=15.13 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=33.3 Q ss_pred HHCCHHHHHHHHHHHHCCCCH----HH----HHHHCCCCHHHH--HHHHCCCCCC-----CCCEEEEEECCCCHHHHHHH Q ss_conf 210025566514544204412----45----776313501112--2220132111-----68638987415535789998 Q gi|254780401|r 176 RVPLSRQLSYVDAILYVGNKK----NV----ISSIKNKSVYFA--KLKPRLTFDL-----SGKKVLAFSGIADTEKFFTT 240 (338) Q Consensus 176 REp~~~~l~rad~vi~~~~~~----~~----~~~~~~~~i~~~--~~~~~~~~~l-----~~k~v~afsGIa~P~~F~~~ 240 (338) ++-+..+++++|+||++|.-. +. .......++.+. ..+|....-. ......+|+==|+|.....+ T Consensus 78 ~~~l~~~~~~~DiVIttGG~g~g~~D~t~~a~~~~~~~~i~~~~~~~~Pg~~~~~~~~~~~~~~~~vi~LPG~P~aa~~~ 157 (174) T 2fts_A 78 LNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT 157 (174) T ss_dssp HHHHHHHHHHCSEEEEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSCTTCEEEEEEETTEEEEEEEECSSHHHHHHH T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCHHHHHH T ss_conf 99998645434579850554614678899998751562799967520378654567712589984699756674445554 Q ss_pred HHHHCCCC Q ss_conf 87401000 Q gi|254780401|r 241 VRQLGALI 248 (338) Q Consensus 241 L~~~g~~i 248 (338) +..+-..+ T Consensus 158 ~~~~v~p~ 165 (174) T 2fts_A 158 CNLFVVPA 165 (174) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 78763078 No 435 >>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Salmonella typhimurium} (A:42-95,A:282-297) Probab=36.28 E-value=16 Score=16.73 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.0 Q ss_pred CCCCCCHHHHHHHHHHHHC-CCCEE Q ss_conf 7888748999999998524-73159 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK-NLKPG 78 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~-g~~~~ 78 (338) |=.||.+|...||+.|.+. ||.|+ T Consensus 32 gPQGk~~fi~ALA~lLn~~YGWn~~ 56 (70) T 3g7q_A 32 GPQGKTALLNALAVLLRETLGWDPG 56 (70) T ss_dssp CTTSHHHHHHHHHHHHHHHHCCCCC T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 9877599999999868998689944 No 436 >>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} (A:) Probab=36.19 E-value=28 Score=15.12 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=15.6 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 63465201225664102457479971 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338) -|.++.+-.+|...+.+..+|+||+| T Consensus 33 ~v~~a~~~~~al~~~~~~~~dliilD 58 (137) T 3hdg_A 33 EVWSAGDGEEGERLFGLHAPDVIITD 58 (137) T ss_dssp CEEEESSHHHHHHHHHHHCCSEEEEC T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEE T ss_conf 99998999999999984788889982 No 437 >>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} (A:1-226) Probab=36.13 E-value=8.8 Score=18.65 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=23.7 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH Q ss_conf 338898899823000788874899999999852 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338) ...+-+|+-+|.= |||||-++..+++.+.. T Consensus 43 ~~~~~~vLL~Gpp---GtGKT~la~~la~~~~~ 72 (226) T 2r44_A 43 ICTGGHILLEGVP---GLAKTLSVNTLAKTXDL 72 (226) T ss_dssp HHHTCCEEEESCC---CHHHHHHHHHHHHHTTC T ss_pred HHCCCCEEEECCC---CCHHHHHHHHHHHHHCC T ss_conf 9769958998999---87099999999986401 No 438 >>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} (A:) Probab=35.99 E-value=26 Score=15.24 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=12.1 Q ss_pred CCCCCCHHHHHHHHCCC----------CCCEEEEC Q ss_conf 34652012256641024----------57479971 Q gi|254780401|r 117 TIVTSDRKIGVQMLLQE----------GVDIIIMD 141 (338) Q Consensus 117 v~V~~~R~~~~~~~~~~----------~~diiIlD 141 (338) |..+.+=.+|..++.+. .+|+||+| T Consensus 35 v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD 69 (149) T 1k66_A 35 IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLD 69 (149) T ss_dssp EEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEEC T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEC T ss_conf 99989999999999851311111125799989981 No 439 >>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* (A:) Probab=35.84 E-value=18 Score=16.46 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.3 Q ss_pred ECCCCCCHHHHHHHHHHH Q ss_conf 078887489999999985 Q gi|254780401|r 54 MGGTGKTPTALAIAKAVI 71 (338) Q Consensus 54 vGGtGKTP~v~~l~~~l~ 71 (338) .-|+|||-++..|++.|. T Consensus 15 ~~GsGKtT~a~~La~~l~ 32 (168) T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168) T ss_dssp CTTSSHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHC T ss_conf 999989999999999969 No 440 >>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} (A:73-317,A:427-443,A:654-697) Probab=35.81 E-value=22 Score=15.77 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=24.0 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCC Q ss_conf 987415535789998874010000122143323489899999999756479879985466343823 Q gi|254780401|r 226 LAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHK 291 (338) Q Consensus 226 ~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~ 291 (338) ..+.|+-+-+.|.+++..+.. +-|.+.++-+..+| =..+=.|+--+|||-+ T Consensus 222 ~~~~~~dD~~~f~~~~~al~~-----lGf~~~~~~~l~~L----------~~~l~~t~~hfIRCIk 272 (306) T 1w7j_A 222 PVIDGIDDAKEMVNTRQACTL-----LGIVKQHSFIGVLD----------IYGFETTTPHYVRCIK 272 (306) T ss_dssp CCCTTCCHHHHHHHHHHHHHH-----TTCSCCSEEEEEEE----------CCCCCCSEEEEEEEEC T ss_pred CCCCCCCHHHHHHHHHHHHHH-----CCCCCCCCEEEEEE----------ECCCCCCCCEEEEEEC T ss_conf 203785639999999999986-----49956551588885----------0486557987999979 No 441 >>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:440-652) Probab=35.72 E-value=28 Score=15.07 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=18.2 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 8998230007888748999999998524 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) +.-+|- =|||||=++.+||+.+... T Consensus 52 ~ll~Gp---pG~GKT~lAk~lA~~~~~~ 76 (213) T 1r6b_X 52 FLFAGP---TGVGKTEVTVQLSKALGIE 76 (213) T ss_dssp EEEECS---TTSSHHHHHHHHHHHHTCE T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 898778---8756899999999980688 No 442 >>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.31A {Listeria innocua} (A:84-253) Probab=35.48 E-value=28 Score=15.04 Aligned_cols=121 Identities=10% Similarity=0.047 Sum_probs=64.0 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCC--EEEECCCCCHHHHCCHHHHHH-H-----------CCC Q ss_conf 888748999999998524731598760457877-----775--587145678877042123322-0-----------576 Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS-----RIS--FRVDLEKHSAYDVGDEPLLLA-R-----------RAV 116 (338) Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~-----~~~--~~v~~~~~~~~~vGDEp~lla-~-----------~~p 116 (338) ++|=|.....+...|.+.|-.+.+-+=+|..-. .|. ..+....... .-++....+ + +.| T Consensus 7 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~NP 84 (170) T 3ffh_A 7 TAGVDELIELLTRVLLDTTTNTVXATPTFVQYRQNALIEGAEVREIPLLQDGE--HDLEGXLNAIDEKTTIVWICNPNNP 84 (170) T ss_dssp ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSC--CCHHHHHHHCCTTEEEEEEESSCTT T ss_pred ECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCC--CCHHHHHHHCCCCCCEEEECCCCCC T ss_conf 28788999999999708999899836860477899986597201320134542--0589999756779838997799899 Q ss_pred C--CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----------CCEEEEEEECCCCCCC-C----CCCCCCHHHHHC Q ss_conf 3--46520122566410245747997183223441-----------2306999961843356-6----553761365210 Q gi|254780401|r 117 T--IVTSDRKIGVQMLLQEGVDIIIMDDGFHSADL-----------QADFSLIVVNSHRGLG-N----GLVFPAGPLRVP 178 (338) Q Consensus 117 v--~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l-----------~rdl~Ivl~d~~~~~g-n----~~llPaGpLREp 178 (338) + +.+.++.+.+..+.+ .-+++|.||.+++... ..+-.|++....+.|| . |+++--..++|- T Consensus 85 tG~~~~~~~~~~l~~~~~-~~~~~i~Dda~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~g~i~~~~~~~~~ 163 (170) T 3ffh_A 85 TGNYIELADIQAFLDRVP-SDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQ 163 (170) T ss_dssp TCCCCCHHHHHHHHTTSC-TTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHH T ss_pred CCCCCCHHHHHHHHHHCC-CCCEEEEECHHHHHHCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 871044899999999733-4838999640267642577642123303674576225653214665444234599999999 Q ss_pred C Q ss_conf 0 Q gi|254780401|r 179 L 179 (338) Q Consensus 179 ~ 179 (338) + T Consensus 164 l 164 (170) T 3ffh_A 164 L 164 (170) T ss_dssp H T ss_pred H T ss_conf 9 No 443 >>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens str} (A:) Probab=35.47 E-value=27 Score=15.22 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=24.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 000788874899999999852473159876045 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338) +++|||| =+=.+|++.|.++|+++.++.|.- T Consensus 18 LVTGatG--fiG~~lv~~Ll~~g~~V~~~~~~~ 48 (342) T 2hrz_A 18 AIIGAAG--XVGRKLTQRLVKDGSLGGKPVEKF 48 (342) T ss_dssp EEETTTS--HHHHHHHHHHHHHCEETTEEEEEE T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCCCCCEEE T ss_conf 9989986--999999999997799666663079 No 444 >>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} (A:) Probab=35.38 E-value=16 Score=16.75 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=16.5 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 89889982300078887489999999 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) .+.|+.||+ +|.|||-++..++. T Consensus 6 ~~Ki~ivG~---~~vGKTSLi~r~~~ 28 (170) T 1r2q_A 6 QFKLVLLGE---SAVGKSSLVLRFVK 28 (170) T ss_dssp EEEEEEECS---TTSSHHHHHHHHHH T ss_pred EEEEEEECC---CCCCHHHHHHHHHH T ss_conf 889999999---99898999999985 No 445 >>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A (A:1-141,A:295-395) Probab=35.29 E-value=28 Score=15.02 Aligned_cols=35 Identities=6% Similarity=-0.047 Sum_probs=22.2 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHH Q ss_conf 41230699996184335665537613652100255 Q gi|254780401|r 148 DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQ 182 (338) Q Consensus 148 ~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~ 182 (338) ...++.-++++.|.-+---.-+++.|+|-|-...+ T Consensus 123 ~~~~~~~vL~lSATpp~~v~~~~~~~~~~~~~~~~ 157 (242) T 3kqn_A 123 ETAGARLVVLATATPPGSVSGMFDSSVLCECYDAG 157 (242) T ss_dssp TTTTCSEEEEEESSCTTCCCSBCCHHHHHHHHHHH T ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH T ss_conf 46876169996236664434456389999999964 No 446 >>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Rhizobium meliloti} (A:) Probab=35.27 E-value=28 Score=15.02 Aligned_cols=26 Identities=4% Similarity=0.045 Sum_probs=13.1 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 63465201225664102457479971 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338) .|.+..+-.++...+.+..+|+||+| T Consensus 29 ~v~~~~~~~~al~~l~~~~~d~vilD 54 (126) T 1dbw_A 29 AVKMHQSAEAFLAFAPDVRNGVLVTD 54 (126) T ss_dssp EEEEESCHHHHHHHGGGCCSEEEEEE T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEE T ss_conf 99997687999999760688799987 No 447 >>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} (A:206-338) Probab=35.09 E-value=29 Score=15.00 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=21.6 Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 0078887489999999985247315987604 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) .+||||=||+...+-..+.........+-=| T Consensus 11 ia~G~GiaP~~s~l~~~~~~~~~~~i~l~~~ 41 (133) T 1krh_A 11 LAGGTGIAPFLSMLQVLEQKGSEHPVRLVFG 41 (133) T ss_dssp EEEGGGHHHHHHHHHHHHHHCCSSCEEEEEE T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 9798875559999999986144562379871 No 448 >>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} (A:1-21,A:180-326) Probab=35.07 E-value=29 Score=15.00 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=31.6 Q ss_pred HHHCCHHHHHHHHHHHHCCCCH----HH----HHHHCCCCHHHHHHHHCC---CCCCCCCEEEEEECCCCHHHHHHHHHH Q ss_conf 5210025566514544204412----45----776313501112222013---211168638987415535789998874 Q gi|254780401|r 175 LRVPLSRQLSYVDAILYVGNKK----NV----ISSIKNKSVYFAKLKPRL---TFDLSGKKVLAFSGIADTEKFFTTVRQ 243 (338) Q Consensus 175 LREp~~~~l~rad~vi~~~~~~----~~----~~~~~~~~i~~~~~~~~~---~~~l~~k~v~afsGIa~P~~F~~~L~~ 243 (338) +++-+.+++.++|+||++|.-. +. ..........-....|.. .....++.++.. =|+|.....++.. T Consensus 78 I~~~l~~~~~~~DlVIttGG~g~g~~D~t~~al~~~~~~~~~gi~~~PG~~~~~g~~~~~~v~~L--PG~P~aa~~~~~~ 155 (168) T 1uz5_A 78 LKALIEKAVNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGL--PGYPTSCLTNFTL 155 (168) T ss_dssp HHHHHHHHHHHCSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCTTCEEEEETTEEEEEE--CSSHHHHHHHHHH T ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCCEEEEC--CCCCHHHHHHHHH T ss_conf 66654203323424797257343123779999986496699888788313237852136538953--6564005465788 Q ss_pred H Q ss_conf 0 Q gi|254780401|r 244 L 244 (338) Q Consensus 244 ~ 244 (338) + T Consensus 156 ~ 156 (168) T 1uz5_A 156 L 156 (168) T ss_dssp H T ss_pred H T ss_conf 7 No 449 >>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} (A:) Probab=34.91 E-value=19 Score=16.26 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=16.9 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|+|||-++..+.. T Consensus 26 ~~~~KIvivGd---~gVGKTSLi~r~~~ 50 (205) T 1gwn_A 26 NVKCKIVVVGD---SQCGKTALLHVFAK 50 (205) T ss_dssp -CEEEEEEEES---TTSSHHHHHHHHHH T ss_pred CCCEEEEEECC---CCCCHHHHHHHHHH T ss_conf 57869999998---99888999999972 No 450 >>3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} (A:42-103,A:308-335) Probab=34.86 E-value=25 Score=15.39 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=21.2 Q ss_pred ECCEEECCCCCCHHHHHHHHHHHHC-CCCE Q ss_conf 8230007888748999999998524-7315 Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVIDK-NLKP 77 (338) Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~~-g~~~ 77 (338) |||- -|=.||.+|...||+.|.++ ||.| T Consensus 35 lgnY-DgPQG~~~Fi~ALA~lLn~~YGW~~ 63 (90) T 3if2_A 35 XANY-SNPQGDSAFIDALVGFFNRHYDWNP 63 (90) T ss_dssp HHSC-CCTTCCHHHHHHHHHHHHHHHCCCC T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 2628-9986799999999999999858995 No 451 >>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} (A:) Probab=34.83 E-value=29 Score=14.97 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=26.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+||||-. =.++++.|.++|+.+.+++|.-.. T Consensus 8 lVtGatG~i--G~~i~~~Ll~~g~~v~~~~r~~~~ 40 (308) T 1qyc_A 8 LLIGATGYI--GRHVAKASLDLGHPTFLLVRESTA 40 (308) T ss_dssp EEESTTSTT--HHHHHHHHHHTTCCEEEECCCCCT T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC T ss_conf 998998289--999999999787979999889755 No 452 >>2zwm_A Transcriptional regulatory protein YYCF; two-component system, response regulator, dimerization domain, phosphorylation site, cytoplasm; 2.04A {Bacillus subtilis} (A:) Probab=34.79 E-value=29 Score=14.97 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=11.2 Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 3465201225664102457479971 Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338) |.++.+-.+|...+.+..+|+||+| T Consensus 29 v~~a~~~~eAl~~l~~~~~dlvi~D 53 (130) T 2zwm_A 29 VHCAHDGNEAVEMVEELQPDLILLD 53 (130) T ss_dssp EEEECSHHHHHHHHHHHCCSEEEEE T ss_pred EEEECCHHHHHHHHHHCCCCEEECC T ss_conf 9995869999999983799989814 No 453 >>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* (A:) Probab=34.78 E-value=15 Score=16.91 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=18.2 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH Q ss_conf 899823000788874899999999852 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338) |+.+|.- |+|||-++-.||+.|.- T Consensus 10 I~l~G~~---GsGKSTlak~La~~l~~ 33 (227) T 1zd8_A 10 AVIMGAP---GSGKGTVSSRITTHFEL 33 (227) T ss_dssp EEEEECT---TSSHHHHHHHHHHHSSS T ss_pred EEEECCC---CCCHHHHHHHHHHHHCC T ss_conf 9998999---99879999999999799 No 454 >>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* (A:182-494) Probab=34.77 E-value=29 Score=14.96 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=21.8 Q ss_pred HCCCCCCEEEECCCCCCCCCCCEEEEEEEC Q ss_conf 102457479971832234412306999961 Q gi|254780401|r 130 LLQEGVDIIIMDDGFHSADLQADFSLIVVN 159 (338) Q Consensus 130 ~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d 159 (338) +.+.+..+++.+|++.+..+.+|..+..-. T Consensus 184 l~~~gk~~~~W~D~l~~~~~~~d~~~~~W~ 213 (313) T 3gh5_A 184 ANSYGKKVVGWDPSDTSSGATSDSVLQNWT 213 (313) T ss_dssp HHHTTCEEEEETTGGGCTTCCTTCEEEECS T ss_pred HHHCCCEEEEECCCCCCCCCCCCCEEEECC T ss_conf 998498689851202455578743476306 No 455 >>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} (A:156-314) Probab=34.75 E-value=19 Score=16.31 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=20.6 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHC Q ss_conf 8988998230007888748999999998524 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338) .-|+|.| +||||=||+.-.|-..+... T Consensus 7 ~~~~v~i----agGtGIaP~~s~l~~~~~~~ 33 (159) T 1fnb_A 7 NATIIML----GTGTGIAPFRSFLWKMFFEK 33 (159) T ss_dssp TCEEEEE----EEGGGGHHHHHHHHHHHTCC T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHH T ss_conf 8748999----74766017999999999853 No 456 >>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (Y:) Probab=34.72 E-value=19 Score=16.30 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=17.3 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|+|||-++..++. T Consensus 6 ~~~~KIviiGd---~gVGKTsli~r~~~ 30 (206) T 2bcg_Y 6 DYLFKLLLIGN---SGVGKSCLLLRFSD 30 (206) T ss_dssp SEEEEEEEEES---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHC T ss_conf 78889999999---99198999999960 No 457 >>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} (A:104-343) Probab=34.71 E-value=12 Score=17.79 Aligned_cols=27 Identities=15% Similarity=-0.152 Sum_probs=21.5 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 788874899999999852473159876 Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|||||-+++-++-.....|..+...+ T Consensus 28 pG~GKT~l~~q~~~~~~~~~~~~~~~~ 54 (240) T 1v5w_A 28 FRTGKTQLSHTLCVTAQLPGAGGYPGG 54 (240) T ss_dssp TTCTHHHHHHHHHHHTTSCBTTTBCCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 683499999999999986454056676 No 458 >>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreductase; HET: FAD; 1.56A {Physarum polycephalum} (A:111-243) Probab=34.61 E-value=23 Score=15.61 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=16.7 Q ss_pred EECCCCCCHHHHHHHHHHHHC Q ss_conf 007888748999999998524 Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~ 73 (338) .+||||=||+...|-..++.. T Consensus 12 iagG~GItP~~s~l~~~~~~~ 32 (133) T 2eix_A 12 IAGGTGITPMLQVARAIIKNP 32 (133) T ss_dssp EEEGGGHHHHHHHHHHHHTCT T ss_pred EECCCCCCCHHHHHHHHHHHC T ss_conf 971577640789999999730 No 459 >>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* (D:) Probab=34.54 E-value=29 Score=14.94 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=27.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| =+=.+|++.|.+.|+.+.++.|.-.. T Consensus 9 LITGatG--fiG~~lv~~Ll~~~~~v~~~~~~~~~ 41 (337) T 2c29_D 9 CVTGASG--FIGSWLVMRLLERGYTVRATVRDPTN 41 (337) T ss_dssp EETTTTS--HHHHHHHHHHHHTTCEEEEEESCTTC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9978987--89999999999783989999788752 No 460 >>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} (A:) Probab=34.54 E-value=17 Score=16.53 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=28.3 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEECCCC----------CCCCCCCEEEEEEECCC Q ss_conf 465201225664102457479971832----------23441230699996184 Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMDDGF----------HSADLQADFSLIVVNSH 161 (338) Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlDDGf----------Qh~~l~rdl~Ivl~d~~ 161 (338) .++.+-.+|...+.+..+|+||+|-.+ |=++..++.-++++.+. T Consensus 31 ~~a~~~~~al~~~~~~~~dlii~D~~lP~~~G~~l~~~i~~~~~~~pvi~lt~~ 84 (120) T 1tmy_A 31 GEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAM 84 (120) T ss_dssp EEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECT T ss_pred EEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC T ss_conf 998899999999984689889984568999789999999986889978999734 No 461 >>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240) Probab=34.51 E-value=19 Score=16.31 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=18.8 Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 48999999998524731598760457 Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) -|-+.-+.+.|+++|++.+|+|.+.. T Consensus 24 ~pGv~e~L~~Lk~~G~~l~i~Tn~~~ 49 (152) T 2hi0_A 24 FPGILDLXKNLRQKGVKLAVVSNKPN 49 (152) T ss_dssp CTTHHHHHHHHHHTTCEEEEEEEEEH T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 78546899998641245211356736 No 462 >>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} (A:114-250) Probab=34.45 E-value=29 Score=14.93 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.1 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -|+|. .+||||=||+.-.|-..+........++- T Consensus 5 ~~iv~----iAgG~GIaP~~s~l~~~~~~~~~~~v~l~ 38 (137) T 1tvc_A 5 APRYF----VAGGTGLAPVVSMVRQMQEWTAPNETRIY 38 (137) T ss_dssp SCEEE----EEESSTTHHHHHHHHHHHHHTCCSCEEEE T ss_pred CCEEE----EECCCCCCCCCCCEEEECCCCCCCCCEEE T ss_conf 54699----96487864422210000124777420247 No 463 >>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} (A:) Probab=34.40 E-value=17 Score=16.53 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=18.0 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHH Q ss_conf 43388988998230007888748999999 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338) .....+.|+.||+ +|+|||-++..++ T Consensus 14 ~~~~~~kI~iiG~---~gvGKTSLi~r~~ 39 (186) T 1ksh_A 14 QKERELRLLMLGL---DNAGKTTILKKFN 39 (186) T ss_dssp ---CCEEEEEECS---TTSSHHHHHHHHT T ss_pred CCCCEEEEEEECC---CCCCHHHHHHHHH T ss_conf 4664679999998---9999899999982 No 464 >>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} (A:1-190) Probab=34.37 E-value=29 Score=14.92 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| -+=.++++.|.++|+.+.++.|.-.. T Consensus 5 lVtGatG--~iG~~lv~~Ll~~g~~v~~~~~~~~~ 37 (190) T 1db3_A 5 LITGVTG--QDGSYLAEFLLEKGYEVHGIKRRASS 37 (190) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECC---- T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9957787--89999999999785989999789875 No 465 >>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} (A:) Probab=34.30 E-value=16 Score=16.82 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=17.5 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH Q ss_conf 899823000788874899999999852 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338) |+..|.- |+|||-++..|++.|.. T Consensus 13 I~i~G~~---GsGKSTla~~La~~l~~ 36 (184) T 1y63_A 13 ILITGTP---GTGKTSMAEMIAAELDG 36 (184) T ss_dssp EEEECST---TSSHHHHHHHHHHHSTT T ss_pred EEEECCC---CCCHHHHHHHHHHHHCC T ss_conf 9998299---99989999999998589 No 466 >>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Probab=34.18 E-value=30 Score=14.90 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=14.3 Q ss_pred ECCCCHHHHHHHHHHHCCCC Q ss_conf 41553578999887401000 Q gi|254780401|r 229 SGIADTEKFFTTVRQLGALI 248 (338) Q Consensus 229 sGIa~P~~F~~~L~~~g~~i 248 (338) .-|+.|.++...++...... T Consensus 238 IVIgTPgRLldlik~~~l~L 257 (326) T 3fho_A 238 IVIGTPGTVMDLMKRRQLDA 257 (326) T ss_dssp EEEECHHHHHHHHHTTCSCC T ss_pred EEECCCCHHHHHHHHHCCCH T ss_conf 99569814999998723663 No 467 >>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} (A:1-144) Probab=34.10 E-value=30 Score=14.89 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=26.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +..||||-. =..|++.|.++|+.+.++.|--.. T Consensus 6 lVtGatG~i--G~~l~~~L~~~g~~v~~~~~~~~~ 38 (144) T 2gas_A 6 LILGPTGAI--GRHIVWASIKAGNPTYALVRKTIT 38 (144) T ss_dssp EEESTTSTT--HHHHHHHHHHHTCCEEEEECCSCC T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC T ss_conf 998999689--999999999788949999778643 No 468 >>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263) Probab=34.09 E-value=30 Score=14.89 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=57.0 Q ss_pred ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC---CC--C-CCC Q ss_conf 82300078887489999999985247315987604578777755871456788770421233220576---34--6-520 Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV---TI--V-TSD 122 (338) Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p---v~--V-~~~ 122 (338) |.-+...-||--|-+....+.|++.|+++.++|-... ..+.-+++... ++ + ..+ T Consensus 28 ~~~~~~~~~~~~P~a~e~I~~L~~~Gi~v~IiTGD~~--------------------~~a~~ia~~lgI~~v~a~v~p~~ 87 (164) T 2iye_A 28 IDTIIFDKTGTLPNLKDYLEKLKNEGLKIIILSGDKE--------------------DKVKELSKELNIQEYYSNLSPED 87 (164) T ss_dssp CCEEEEESTTTTSCCHHHHHHHHGGGCEEEEECSSCH--------------------HHHHHHHHHHTCSEEECSCCHHH T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCC--------------------CCCHHHHHHHCHHHHHHCCCHHH T ss_conf 9999991885231299999999975992798238742--------------------11014799853025340235788 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEE Q ss_conf 12256641024574799718322344123069999 Q gi|254780401|r 123 RKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIV 157 (338) Q Consensus 123 R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl 157 (338) +.+-++.+.+.+-.++..-||.-+...-+--++-+ T Consensus 88 K~~iv~~L~~~g~~Va~VGDg~ND~~aL~~AdVGI 122 (164) T 2iye_A 88 KVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 122 (164) T ss_dssp HHHHHHHHHHTTCCEEEEECSTTTHHHHHHSSEEE T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCEEE T ss_conf 98888455225605899942310466886487999 No 469 >>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} (A:) Probab=34.04 E-value=21 Score=16.02 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=16.2 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|+|||-++..++. T Consensus 16 ~~~~KIvivGd---~~vGKTSLl~r~~~ 40 (187) T 2a9k_A 16 LALHKVIMVGS---GGVGKSALTLQFMY 40 (187) T ss_dssp -CEEEEEEECS---TTSSHHHHHHHHHH T ss_pred CCEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 63039999997---99688999999972 No 470 >>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} (A:) Probab=33.99 E-value=20 Score=16.08 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=18.0 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 433889889982300078887489999999 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) +++..+.|+.||+ +|.|||-++..+.+ T Consensus 3 ~~~~~~KivilGd---~~vGKTsLi~r~~~ 29 (184) T 1m7b_A 3 NQNVKCKIVVVGD---SQCGKTALLHVFAK 29 (184) T ss_dssp ---CEEEEEEEES---TTSSHHHHHHHHHH T ss_pred CCCEEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 8715579999998---99498999999971 No 471 >>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} (A:121-222) Probab=33.96 E-value=30 Score=14.88 Aligned_cols=34 Identities=6% Similarity=-0.096 Sum_probs=29.8 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 8898899823000788874899999999852473 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338) .|..+|.|+||.+++...+=.-.-|.+++.+-|. T Consensus 2 ~p~~~i~v~nl~v~~l~~~~~~~~l~~~f~~~G~ 35 (102) T 3dxb_A 2 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA 35 (102) T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSC T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 4104678887426223567888999999976597 No 472 >>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A (A:) Probab=33.92 E-value=30 Score=14.87 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=16.1 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCC Q ss_conf 63465201225664102457479971832 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338) -|.+..+=.+|.+.+.+..+|+||+|..+ T Consensus 31 ~v~~a~~~~~al~~l~~~~~d~iilD~~l 59 (127) T 2gkg_A 31 TVDETTDGKGSVEQIRRDRPDLVVLAVDL 59 (127) T ss_dssp EEEEECCHHHHHHHHHHHCCSEEEEESBC T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEEECC T ss_conf 99998684999999981799799743001 No 473 >>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, GALE, NAD, SYK, UDP, N- acetylglucosamine, N-acetylgalactosamine, UDP-GLC; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} (A:) Probab=33.85 E-value=30 Score=14.86 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=27.2 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 00078887489999999985247315987604578 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338) +.+|||| =+=.+|++.|.++|+.+.++.|.... T Consensus 31 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~~ 63 (352) T 1sb8_A 31 LITGVAG--FIGSNLLETLLKLDQKVVGLDNFATG 63 (352) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSC T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9966878--89999999999784989999788876 No 474 >>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate guanyltransferase, structural genomics; 2.20A {Thermus thermophilus HB8} (A:1-263) Probab=33.77 E-value=18 Score=16.45 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=30.1 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 8898899823000788874899999999852473159876045787 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338) .|.|.+-| .|+.|+..+..+.|.+.|.+-.++..||... T Consensus 24 ~PK~Li~v-------~G~kpli~~~i~~l~~~gi~~iivv~gy~~~ 62 (263) T 2cu2_A 24 RPKPFLPL-------FEGKTLLEATLERLAPLVPPERTLLAVRRDQ 62 (263) T ss_dssp BCGGGCBC-------GGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG T ss_pred CCCCCEEC-------CCCCCHHHHHHHHHHCCCCCCCEEEEEEHHH T ss_conf 99331006-------9999899999997636588676399972789 No 475 >>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:100-257) Probab=33.67 E-value=14 Score=17.17 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=24.4 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -+++.| .||||=||+.-.|-..+.......+.+- T Consensus 8 ~~iv~i----agGtGIaP~~s~l~~~~~~~~~~~v~l~ 41 (158) T 2qdx_A 8 KHLYLL----STGTGMAPFLSVIQDPETYERYEKVILV 41 (158) T ss_dssp SEEEEE----EEGGGGHHHHHHTTCHHHHHHCSEEEEE T ss_pred CEEEEE----ECCCCCCCCHHHHHHHHHHCCCCCEEEE T ss_conf 327999----8067733210666666764368768999 No 476 >>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* (A:113-272) Probab=33.56 E-value=17 Score=16.55 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=24.5 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 898899823000788874899999999852473159876 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) +-|||.| +||||=||+...|-..+.........+- T Consensus 8 ~~~ivli----agGtGItP~~sil~~l~~~~~~~~v~l~ 42 (160) T 2bgi_A 8 GKRLWFL----ATGTGIAPFASLMREPEAYEKFDEVIMM 42 (160) T ss_dssp CSEEEEE----EEGGGGHHHHHHTTCGGGGTSCSEEEEE T ss_pred CCCCEEE----ECCCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 6540478----6267764155888877641675169999 No 477 >>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} (A:) Probab=33.49 E-value=30 Score=14.82 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=24.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 00078887489999999985247315987604 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |.+|||| -+=.+|++.|.++|+.+.++.|- T Consensus 15 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~ 44 (342) T 1y1p_A 15 LVTGANG--FVASHVVEQLLEHGYKVRGTARS 44 (342) T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESS T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECC T ss_conf 9989988--99999999999785989999688 No 478 >>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} (A:) Probab=33.48 E-value=30 Score=14.82 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=46.6 Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH-CCC---CEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC Q ss_conf 8898899823000788874899999999852-473---159876045787777558714567887704212332205763 Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID-KNL---KPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT 117 (338) Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~---~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv 117 (338) ..|-.||.||+ +..|++..+.+.+-. +|. .+-|-|.|=.....+.. .+..+.. .++.++-- T Consensus 8 ~~ilFVC~gN~-----cRSpmAE~i~~~~~~~~~l~~~~~~v~SAG~~~~~~~~~----~~~~a~~------~l~~~gi~ 72 (161) T 1d1q_A 8 ISVAFIALGNF-----CRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGES----PDHRTVS------ICKQHGVK 72 (161) T ss_dssp EEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCC----CCHHHHH------HHHHTTCC T ss_pred CEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC----CCHHHHH------HHHHCCCC T ss_conf 76999869838-----499999999999998769976647885343466778999----8999999------99984999 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCC Q ss_conf 4652012256641024574799718322344123 Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQA 151 (338) Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~r 151 (338) .-+..| .+..-.-..+|+||.-|--|+..+.+ T Consensus 73 ~~~~s~--~l~~~~~~~~DlIi~M~~~~~~~l~~ 104 (161) T 1d1q_A 73 INHKGK--QIKTKHFDEYDYIIGMDESNINNLKK 104 (161) T ss_dssp CCCCBC--BCCGGGGGTCSEEEESSHHHHHHHHH T ss_pred CCCCCC--CCCHHHHHHCCEEEECCHHHHHHHHH T ss_conf 887000--07775752389999888899999998 No 479 >>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} (A:1-120,A:185-217) Probab=33.46 E-value=21 Score=16.03 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=15.8 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH Q ss_conf 8998230007888748999999998 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV 70 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l 70 (338) |+.+|. =|+|||-++..|++.+ T Consensus 8 I~IiG~---PGSGKTTlak~LA~~l 29 (153) T 3be4_A 8 LILIGA---PGSGKGTQCEFIKKEY 29 (153) T ss_dssp EEEEEC---TTSSHHHHHHHHHHHH T ss_pred EEEECC---CCCCHHHHHHHHHHHH T ss_conf 999899---9998799999999987 No 480 >>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} (A:162-365) Probab=33.28 E-value=14 Score=17.28 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=16.4 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH Q ss_conf 89982300078887489999999985 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338) |+.+|.- |+|||-++..|++.+. T Consensus 12 I~i~G~~---GsGKtTla~~La~~~g 34 (204) T 1lw7_A 12 VAILGGE---SSGKSVLVNKLAAVFN 34 (204) T ss_dssp EEEECCT---TSHHHHHHHHHHHHTT T ss_pred EEEECCC---CCCHHHHHHHHHHHHC T ss_conf 9998278---7887999999999968 No 481 >>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} (A:100-248) Probab=33.13 E-value=22 Score=15.83 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=21.9 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98899823000788874899999999852473159876 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) -++|. .+||||=||+.-.+-..+.........+- T Consensus 8 ~~ii~----iagG~GItP~~s~i~~~~~~~~~~~v~l~ 41 (149) T 1fdr_A 8 ETLWM----LATGTAIGPYLSILRLGKDLDRFKNLVLV 41 (149) T ss_dssp SEEEE----EEEGGGGHHHHHHHHHCCSCTTCSEEEEE T ss_pred CEEEE----EEECCCCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 77899----99278756289999998863886379998 No 482 >>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase; 2.50A {Hepatitis c virus} (A:203-343,A:497-638) Probab=33.09 E-value=31 Score=14.78 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=54.8 Q ss_pred CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHH---HHHHHCCCCHHHHHHHHCCCCCCCCCEEE Q ss_conf 230699996184335665537613652100255665145442044124---57763135011122220132111686389 Q gi|254780401|r 150 QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKN---VISSIKNKSVYFAKLKPRLTFDLSGKKVL 226 (338) Q Consensus 150 ~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~k~v~ 226 (338) ..+.-+|++.|.-+--=.-+++.|+|-|-...+-.--+ -.+.+ .+..+-+ ..+-+....++ +.-.. T Consensus 125 ~~~~qvIllSATpP~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~ 193 (283) T 1cu1_A 125 AGARLVVLATATPPGSVSGMFDSSVLCECYDAGCAWYE-----LTPAETSVRLRAYLN-----TPGLPVCQDHL-EFWES 193 (283) T ss_dssp TTCSEEEEEESSCTTCCSSBCCHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHH-----STTSCBCCCCH-HHHHH T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHC-----CCCCHHHHHHH-HHHHH T ss_conf 87518997346666221577731566574550230112-----762788889998725-----99956666568-89999 Q ss_pred EEECCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCC Q ss_conf 8741553578-99988740100001221433234898999999997564798799854663438233 Q gi|254780401|r 227 AFSGIADTEK-FFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKR 292 (338) Q Consensus 227 afsGIa~P~~-F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~ 292 (338) .|||..+++. |.+.-++.|.+..-... | =..+..+|+...---=+.=|...|++.. T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283) T 1cu1_A 194 VFTGLTHIDAHFLSQTKQAGDNFPYLVA------Y----QATVCARAQAPPPSWDQMWKCLIRLKPT 250 (283) T ss_dssp HHHTCCSCCHHHHHHHHHHCCSCHHHHH------H----HHHHHHHTTCCCSCCSGGGGGGGGGGGG T ss_pred HHCCCCCCCHHHHHHHHHCCCCCHHHHH------H----HHHHHHHCCCCCCCCCHHHHHHHHCCCC T ss_conf 8607756728776688754888410068------8----9999886279989867233022105767 No 483 >>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} (A:) Probab=33.04 E-value=31 Score=14.77 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 00078887489999999985247315987604 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338) |.+|+||=.-+=..+|+.|.++|.++.+.+|- T Consensus 18 lVTGa~~~~GIG~aiA~~la~~Ga~Vil~~r~ 49 (271) T 3ek2_A 18 LLTGLLSNRSIAYGIAKACKREGAELAFTYVG 49 (271) T ss_dssp EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 99899886189999999999869999999588 No 484 >>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B (A:) Probab=33.04 E-value=22 Score=15.88 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=10.9 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 63465201225664102457479971 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338) .+.++.+-.+|.+.+.+..+|+||+| T Consensus 26 ~v~~a~~~~~al~~l~~~~~dlillD 51 (139) T 2jk1_A 26 DVLTAQGAEAAIAILEEEWVQVIICD 51 (139) T ss_dssp CEEEESSHHHHHHHHHHSCEEEEEEE T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEE T ss_conf 99996549999999983789889963 No 485 >>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* (A:) Probab=32.97 E-value=21 Score=15.93 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=17.2 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 3889889982300078887489999999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ...+.|+.||+ +|.|||-++..+.. T Consensus 20 ~~~~kivivG~---~~vGKTsli~r~~~ 44 (189) T 2gf9_A 20 DYMFKLLLIGN---SSVGKTSFLFRYAD 44 (189) T ss_dssp SEEEEEEEECS---TTSSHHHHHHHHHH T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHC T ss_conf 85889999999---99298999999971 No 486 >>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} (A:) Probab=32.84 E-value=18 Score=16.36 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.4 Q ss_pred CCCCCEEEECCEEECCCCCCHHHHH Q ss_conf 3889889982300078887489999 Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALA 65 (338) Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~ 65 (338) ...+.|+.||+ +|+|||-++.. T Consensus 27 ~~~~KivivGd---~~VGKTsli~r 48 (192) T 2b6h_A 27 KKQMRILMVGL---DAAGKTTILYK 48 (192) T ss_dssp TSCEEEEEEES---TTSSHHHHHHH T ss_pred CCEEEEEEECC---CCCCHHHHHHH T ss_conf 87589999999---99888999999 No 487 >>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors; HET: GTP; 1.90A {Homo sapiens} (A:) Probab=32.81 E-value=24 Score=15.60 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=15.6 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 9889982300078887489999999 Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) +.|+.||+ +|+|||-++..+.. T Consensus 4 ~KivlvGd---~~vGKTsLi~r~~~ 25 (167) T 1c1y_A 4 YKLVVLGS---GGVGKSALTVQFVQ 25 (167) T ss_dssp EEEEEECS---TTSSHHHHHHHHHH T ss_pred EEEEEECC---CCCCHHHHHHHHHC T ss_conf 69999998---99899999999970 No 488 >>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} (A:) Probab=32.80 E-value=31 Score=14.75 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=13.8 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC Q ss_conf 63465201225664102457479971 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338) -|..+.+-.+|...+.+..+|+||+| T Consensus 29 ~v~~a~~~~~al~~l~~~~~dliilD 54 (123) T 1xhf_A 29 DVFEATDGAEXHQILSEYDINLVIXD 54 (123) T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEC T ss_pred EEEEECCHHHHHHHHHHCCCCHHHHC T ss_conf 89998986999999983474322200 No 489 >>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} (A:147-275) Probab=32.55 E-value=22 Score=15.84 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.6 Q ss_pred EEECCCCCCHHHHHHHHHHHHC Q ss_conf 0007888748999999998524 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDK 73 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~ 73 (338) +.+||||=||+.-.+-..+... T Consensus 5 ~iA~G~GIaP~~s~l~~~~~~~ 26 (129) T 1umk_A 5 MIAGGTGITPMLQVIRAIMKDP 26 (129) T ss_dssp EEEEGGGHHHHHHHHHHHHTCT T ss_pred EEECCCCCCHHHHHHHHHHHCC T ss_conf 9973730686899999998756 No 490 >3cf2_A P97VCP IN COMPLEX WITH ADPAMP-Pnp {Mus musculus} (A:) Probab=32.54 E-value=15 Score=17.02 Aligned_cols=30 Identities=30% Similarity=0.219 Sum_probs=20.9 Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 899823000788874899999999852473159876 Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338) Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338) ++..|.- |||||-++.++|+.+. .....++ T Consensus 241 ill~Gpp---GtGKT~la~~ia~~~~---~~~~~i~ 270 (806) T 3cf2_A 241 ILLYGPP---GTGKTLIARAVANETG---AFFFLIN 270 (806) T ss_dssp EEEECCT---TSCHHHHHHHHHTTTT---CEEEEEE T ss_pred CCCCCCC---CCCCHHHHHHHHHHHH---HHHHHHC T ss_conf 2134422---2330234577666654---4322202 No 491 >>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} (A:) Probab=32.53 E-value=31 Score=14.72 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=17.8 Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 6433889889982300078887489999999 Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ....-...|+.||. .|+|||-+.-.|++ T Consensus 43 ~~~~~~~ki~ivG~---~~vGKTsLl~~l~~ 70 (193) T 2ged_A 43 GGGSYQPSIIIAGP---QNSGKTSLLTLLTT 70 (193) T ss_dssp ---CCCCEEEEECC---TTSSHHHHHHHHHH T ss_pred CCCCCCCEEEEECC---CCCCHHHHHHHHHC T ss_conf 88765628999898---99974889999863 No 492 >>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* (A:) Probab=32.39 E-value=28 Score=15.11 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=25.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0007888748999999998524731598760457 Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338) Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338) +.+|||| =+=.+|++.|.++|+.+.++.|.-. T Consensus 5 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~ 36 (364) T 2v6g_A 5 LIVGVTG--IIGNSLAEILPLADTPGGPWKVYGV 36 (364) T ss_dssp EEETTTS--HHHHHHHHHTTSTTCTTCSEEEEEE T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 9968998--8999999999868997316899996 No 493 >>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} (A:117-270) Probab=32.31 E-value=23 Score=15.69 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=23.4 Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC--CCEEEEE Q ss_conf 89889982300078887489999999985247--3159876 Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN--LKPGFLS 81 (338) Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g--~~~~ils 81 (338) .-|+|.| +||||=||+.-.|-..++... .....+- T Consensus 20 ~~~ivlI----agGtGIaP~~s~l~~~~~~~~~~~~~v~l~ 56 (154) T 2cnd_A 20 ARRLAMI----CGGSGITPMYQIIQAVLRDQPEDHTEMHLV 56 (154) T ss_dssp CSEEEEE----EEGGGHHHHHHHHHHHHHTTTTCCCEEEEE T ss_pred CCEEEEE----ECCCCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 8538999----657335339999999997387777349999 No 494 >>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} (A:) Probab=32.26 E-value=25 Score=15.47 Aligned_cols=50 Identities=6% Similarity=0.129 Sum_probs=29.5 Q ss_pred HHCCCCCCCCCHHHHHHHHCCCC-CCEEEEC------CCC----CCCCCCCEEEEEEECCC Q ss_conf 20576346520122566410245-7479971------832----23441230699996184 Q gi|254780401|r 112 ARRAVTIVTSDRKIGVQMLLQEG-VDIIIMD------DGF----HSADLQADFSLIVVNSH 161 (338) Q Consensus 112 a~~~pv~V~~~R~~~~~~~~~~~-~diiIlD------DGf----Qh~~l~rdl~Ivl~d~~ 161 (338) .+.+.|..+.+-.+|...+.+.. +|+|++| ||+ +=++..++.-++++.+. T Consensus 25 ~~~~~v~~a~~~~~Al~~l~~~~~~divllD~~mP~~dG~~ll~~ir~~~p~~pvI~lT~~ 85 (151) T 3kcn_A 25 SFDFEVTTCESGPEALACIKKSDPFSVIXVDXRXPGXEGTEVIQKARLISPNSVYLXLTGN 85 (151) T ss_dssp TTTSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECG T ss_pred HCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECC T ss_conf 8799899976789999999856997099984899898759999999981999879997347 No 495 >>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A* (B:) Probab=32.21 E-value=26 Score=15.32 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=16.7 Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH Q ss_conf 33889889982300078887489999999 Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338) Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338) ....+.|+.||+ +|+|||-++..+++ T Consensus 7 ~~~~~KivivG~---~~vGKTsLi~~~~~ 32 (197) T 2rex_B 7 VVARCKLVLVGD---VQCGKTAMLQVLAK 32 (197) T ss_dssp ---CEEEEEECS---TTSSHHHHHHHHHH T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHH T ss_conf 842789999999---99798899999974 No 496 >>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:236-373) Probab=32.11 E-value=32 Score=14.67 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=45.5 Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH Q ss_conf 1686389874-155357899988740100001221433234898999999997564798-7998546 Q gi|254780401|r 220 LSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338) Q Consensus 220 l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338) ..++++++|| .+..-+.+.+.|++.|+.+. .=|...+..+-+...+..++... .+|+|.- T Consensus 30 ~~~~~~lIf~~t~~~~~~l~~~L~~~~~~~~-----~~~~~~~~~~r~~~~~~f~~~~~~~lv~t~~ 91 (138) T 2v1x_A 30 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAG-----AYHANLEPEDKTTVHRKWSANEIQVVVATVA 91 (138) T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEE-----EECTTSCHHHHHHHHHHHHTTSSSEEEECTT T ss_pred CCCCCCEEEEEEEEHHHHHHHHHHHCCCEEE-----ECCCCCHHHHHHHHHHHHHCCCCCEEEEECH T ss_conf 3577616997542214567788764186033-----1047522989999999997799768998450 No 497 >>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} (A:1-139) Probab=32.08 E-value=32 Score=14.67 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=15.6 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCC Q ss_conf 63465201225664102457479971832 Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338) Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338) -|.+..+=.+|...+.+..+|+||+|-.+ T Consensus 26 ~v~~a~~~~~al~~l~~~~~d~iilD~~l 54 (139) T 1ny5_A 26 KVESAERGKEAYKLLSEKHFNVVLLDLLL 54 (139) T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESBC T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEECCC T ss_conf 99998999999999861899899982999 No 498 >>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A* (A:) Probab=32.01 E-value=28 Score=15.02 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=16.6 Q ss_pred CCCHHHHHHHHCCCCCCEEEECCC-----CCCC-CCCCEEEEEEEC Q ss_conf 520122566410245747997183-----2234-412306999961 Q gi|254780401|r 120 TSDRKIGVQMLLQEGVDIIIMDDG-----FHSA-DLQADFSLIVVN 159 (338) Q Consensus 120 ~~~R~~~~~~~~~~~~diiIlDDG-----fQh~-~l~rdl~Ivl~d 159 (338) +.+...-...+.+.++|+||.--| ++.. ---+++..+++| T Consensus 135 g~~~~~~~~~~~~~~~~iii~Tpgrl~~~~~~~~~~l~~l~~lVlD 180 (237) T 3bor_A 135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237) T ss_dssp -------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE T ss_pred CCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 0441478898750687189958557777876088655675699860 No 499 >>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis H37RV} PDB: 2z2j_A 2z2k_A 2jrc_A (A:) Probab=32.00 E-value=12 Score=17.61 Aligned_cols=25 Identities=16% Similarity=-0.059 Sum_probs=11.6 Q ss_pred CCCCCCCCCCCCHHHHHCCHHHHHHHH Q ss_conf 433566553761365210025566514 Q gi|254780401|r 161 HRGLGNGLVFPAGPLRVPLSRQLSYVD 187 (338) Q Consensus 161 ~~~~gn~~llPaGpLREp~~~~l~rad 187 (338) +.|+|.=++=|.|--+- +++|+... T Consensus 98 dlp~Gkirlk~~Gs~gG--HNGlkSI~ 122 (191) T 2z2i_A 98 DLEFGRIRLKIGGGEGG--HNGLRSVV 122 (191) T ss_dssp TSCTTCEEEEESCCCTT--CHHHHHHH T ss_pred CCCCCEEEEECCCCCCC--HHHHHHHH T ss_conf 78775189836997765--16899999 No 500 >>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infectious disease, parasitic protozoan; 1.80A {Entamoeba histolytica hm-1} PDB: 3js5_A* 3ily_A 3ido_A* (A:) Probab=31.98 E-value=32 Score=14.66 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=0.0 Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCC Q ss_conf 43388988998230007888748999999998---524731598760457877775 Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAV---IDKNLKPGFLSRGYGRKSRIS 91 (338) Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l---~~~g~~~~ilsRGYg~~~~~~ 91 (338) +.+..|-.||.||+ +..||+..|.+.+ +..+-++-|-|.|-.....+. T Consensus 2 ~~~~~iLFVC~~N~-----cRSpmAEal~~~~~~~~~~~~~~~v~SAG~~~~~~~~ 52 (161) T 3jvi_A 2 PGSMKLLFVCLGNI-----CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQ 52 (161) T ss_dssp --CEEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTC T ss_pred CCCEEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC T ss_conf 99759999879848-----7999999999999986799986589942203455787 Done!