HHsearch results for GI: 254780401 and protein with PDBid: 1j8m_F
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.26 E-value=0.0051 Score=40.55 Aligned_cols=79 Identities=29% Similarity=0.317 Sum_probs=50.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCC
Q ss_conf 899823000788874899999999852473159876045787777558714567887704212332-20--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~ 122 (338)
|..|| +=|+|||-++.-||.++++.|++|++++= ++.+-.+-|.+.. ++ ..|++++.+
T Consensus 101 i~lvG---~~G~GKTTt~aKLA~~~~~~g~kv~l~a~----------------Dt~R~aA~eQL~~~a~~~~v~~~~~~~ 161 (297)
T 1j8m_F 101 IMLVG---VQGTGKTTTAGKLAYFYKKKGFKVGLVGA----------------DVYRPAALEQLQQLGQQIGVPVYGEPG 161 (297)
T ss_dssp EEEEC---SSCSSTTHHHHHHHHHHHHTTCCEEEEEC----------------CCSSSHHHHHHHHHHHHHTCCEECCTT
T ss_pred EEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCEEEC----------------CCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 99746---76666203799999999967976411211----------------565444899999986313951542377
Q ss_pred HHHH-------HHHHCCCCCCEEEECCC
Q ss_conf 1225-------66410245747997183
Q gi|254780401|r 123 RKIG-------VQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 123 R~~~-------~~~~~~~~~diiIlDDG 143 (338)
.... ...+...+.|+||.|-+
T Consensus 162 ~~d~~~v~~~a~~~~~~~~~D~vlIDTa 189 (297)
T 1j8m_F 162 EKDVVGIAKRGVEKFLSEKMEIIIVDTA 189 (297)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 7776789999999998559988995487