HHsearch results for GI: 254780401 and protein with PDBid: 1nij_A
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.41 E-value=0.056 Score=33.16 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf 89889982300078887489999999985247315987604578777755871456788770421233220576346520
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD 122 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~ 122 (338)
++||..|+-.- |+|||-+.-.|.+. ..|.+++||--=+|.- -+|..- -.+.|++-..|..-|--+..++
T Consensus 3 ~ipv~iitGFL--GaGKTTll~~ll~~--~~~~~~avivNefG~~-----~iD~~l--l~~~~~~v~eL~~GCiCC~~~~ 71 (318)
T 1nij_A 3 PIAVTLLTGFL--GAGKTTLLRHILNE--QHGYKIAVIENEFGEV-----SVDDQL--IGDRATQIKTLTNGCICCSRSN 71 (318)
T ss_dssp CEEEEEEEESS--SSSCHHHHHHHHHS--CCCCCEEEECSSCCSC-----CEEEEE--ECTTSCEEEEETTSCEEECTTS
T ss_pred CCCEEEEEECC--CCCHHHHHHHHHHC--CCCCCEEEEECCCCCC-----CCCHHH--HHCCCCCEEEECCCCEEECCCH
T ss_conf 53689998488--89999999999837--7899789997788763-----000999--8377961898528840303424
Q ss_pred H-HHHHHHHC------CCCCCEEEEC----------------CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf 1-22566410------2457479971----------------83223441230699996184335665537613652100
Q gi|254780401|r 123 R-KIGVQMLL------QEGVDIIIMD----------------DGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 123 R-~~~~~~~~------~~~~diiIlD----------------DGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
- ..+...+. ...+|.||.. |...-..+.-+--+.++|+.+.. ..+...++ .
T Consensus 72 dl~~~l~~ll~~~~~~~~~~d~ivIEtSGla~P~~i~~~l~~~~~~~~~~~l~~vvtvvDa~~~~---~~~~~~~~---~ 145 (318)
T 1nij_A 72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD---EQMNQFTI---A 145 (318)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH---HHHHHCHH---H
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH---HHHHHHHH---H
T ss_conf 58999999999874056776469996478778799999987655314548866622210555456---65432233---5
Q ss_pred HHHHHHHHHHHHCCCCH
Q ss_conf 25566514544204412
Q gi|254780401|r 180 SRQLSYVDAILYVGNKK 196 (338)
Q Consensus 180 ~~~l~rad~vi~~~~~~ 196 (338)
.+.+..||.|+++|.+.
T Consensus 146 ~~Qi~~Ad~IvlnK~Dl 162 (318)
T 1nij_A 146 QSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHHHHTCSEEEEECTTT
T ss_pred HHHHHHCCCHHCCHHHC
T ss_conf 67887367321442210