HHsearch results for GI: 254780401 and protein with PDBid: 2eyq_A
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.84 E-value=0.57 Score=25.99 Aligned_cols=212 Identities=14% Similarity=0.171 Sum_probs=96.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC---CC--
Q ss_conf 8998230007888748999999998524731598760457877775587145678877042123322057634---65--
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI---VT-- 120 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~---V~-- 120 (338)
.+..|- =|+|||=+.+..+-.-...|.+++|++ |..+ -+.+.=.+-.-.....|+- +.
T Consensus 627 ~L~~g~---tGsGKT~v~~~a~~~a~~~g~qv~il~---------PT~~-----La~Q~~~~~~~~~~~~~~~v~~l~~~ 689 (1151)
T 2eyq_A 627 RLVCGD---VGFGKTEVAMRAAFLAVDNHKQVAVLV---------PTTL-----LAQQHYDNFRDRFANWPVRIEMISRF 689 (1151)
T ss_dssp EEEECC---CCTTTHHHHHHHHHHHHTTTCEEEEEC---------SSHH-----HHHHHHHHHHHHSTTTTCCEEEESTT
T ss_pred HEEECC---CCCCHHHHHHHHHHHHHHCCCEEEEEE---------CCHH-----HHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 643407---898669999999999863586489994---------8499-----99999999999751159789985177
Q ss_pred ---CCHHHHHHHHCCCCCCEEEECCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf ---201225664102457479971832-2344123069999618433566553761365210025566514544204412
Q gi|254780401|r 121 ---SDRKIGVQMLLQEGVDIIIMDDGF-HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 121 ---~~R~~~~~~~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
+.+.+....+..-.+|++|---++ +..--.+++.++++|-.+.||... ||-+.......+.+..+..+.
T Consensus 690 ~~~~e~~~~l~~~~~G~i~iiigT~~~l~~~~~f~~Lgl~iiDE~h~f~~~~-------~~~~k~~~~~~~~l~~sATp~ 762 (1151)
T 2eyq_A 690 RSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH-------KERIKAMRANVDILTLTATPI 762 (1151)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHH-------HHHHHHHHTTSEEEEEESSCC
T ss_pred CCHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCEEEECHHHHHHHHH-------HHHHHHHCCCCCEEEECCCCC
T ss_conf 6288999999874389834474258880276021556734624255521989-------999985078975885105687
Q ss_pred -HHHHH-HC---------CCCHHH-------HHH-----HHCCCCC-CCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCC
Q ss_conf -45776-31---------350111-------222-----2013211-168-63898741553578999887401000012
Q gi|254780401|r 197 -NVISS-IK---------NKSVYF-------AKL-----KPRLTFD-LSG-KKVLAFSGIADTEKFFTTVRQLGALIEQC 251 (338)
Q Consensus 197 -~~~~~-~~---------~~~i~~-------~~~-----~~~~~~~-l~~-k~v~afsGIa~P~~F~~~L~~~g~~i~~~ 251 (338)
..... .. ..|... ... ....... .++ +.+..+.-+.+-+.-...+.++-.+.
T Consensus 763 prtl~~~~~g~~d~s~~~~~p~~~~~~~t~~~~~~~~~~~~~i~~el~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~--- 839 (1151)
T 2eyq_A 763 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA--- 839 (1151)
T ss_dssp CHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTS---
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCC---
T ss_conf 78999998511132001258877767479961411577999999999818976899536665689999999768876---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 21433234898999999997564798-7998546
Q gi|254780401|r 252 YSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 252 ~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
..-.=|-.-++++.+++.....+... .+|+|.=
T Consensus 840 ~v~~~Hg~m~~~~r~~~~~~F~~g~~~iLVaT~i 873 (1151)
T 2eyq_A 840 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 873 (1151)
T ss_dssp CEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 5888605578999999999997488509996403