HHSEARCH alignment of GI: 254780401 and SCOP domain: d1gm5a3

Alignment
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.05  E-value=0.013  Score=36.08  Aligned_cols=102  Identities=15%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCC------HHHHCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             7888748999999998524731598760457877775587145678------8770421233220576346520122566
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS------AYDVGDEPLLLARRAVTIVTSDRKIGVQ  128 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~------~~~vGDEp~lla~~~pv~V~~~R~~~~~  128 (338)
                      =|+|||=+.+..+....+.|++++++.         |..+-...|-      -...|.+..++...   .-.++|.+...
T Consensus       113 vGSGKT~Va~~a~~~~~~~g~q~~~m~---------Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~---~~~~~r~~~~~  180 (264)
T d1gm5a3         113 VGSGKTVVAQLAILDNYEAGFQTAFMV---------PTSILAIQHYRRTVESFSKFNIHVALLIGA---TTPSEKEKIKS  180 (264)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTSCEEEEC---------SCHHHHHHHHHHHHHHHTCSSCCEEECCSS---SCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE---------EHHHHHHHHHHHHHHHHHHCCCCCEEECCC---CCHHHHHHHHH
T ss_conf             355665999999999885135505874---------047665789999988620123121110110---13699999999


Q ss_pred             HHCCCCCCEEEECCCC-CCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             4102457479971832-234412306999961843356655
Q gi|254780401|r  129 MLLQEGVDIIIMDDGF-HSADLQADFSLIVVNSHRGLGNGL  168 (338)
Q Consensus       129 ~~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d~~~~~gn~~  168 (338)
                      .+..-.+++||---.+ |..--.+++.+|++|-+..||-.+
T Consensus       181 ~~~~g~~~iiIGThsl~~~~~~f~~LglviiDEqH~fgv~Q  221 (264)
T d1gm5a3         181 GLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ  221 (264)
T ss_dssp             HHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC----
T ss_pred             HHHCCCCCEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHH
T ss_conf             99779979999653885489874556225632421002434


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]