HHSEARCH alignment of GI: 254780401 and SCOP domain: d1j8yf2

Alignment
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=96.29  E-value=0.0027  Score=40.85  Aligned_cols=81  Identities=30%  Similarity=0.297  Sum_probs=50.5

Q ss_pred             CCEE--EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH---CCCCC
Q ss_conf             9889--982300078887489999999985247315987604578777755871456788770421233220---57634
Q gi|254780401|r   44 IPVI--CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR---RAVTI  118 (338)
Q Consensus        44 ~pVI--~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~---~~pv~  118 (338)
                      .|.|  -||-   =|+|||-++.-||.+++++|.+|++++=                ++..-.+-|.+....   .+|+.
T Consensus        11 ~p~vi~lvGp---tGvGKTTTiAKLA~~~~~~g~kV~lit~----------------Dt~R~ga~eQL~~~a~~l~v~~~   71 (211)
T d1j8yf2          11 IPYVIMLVGV---QGTGKATTAGKLAYFYKKKGFKVGLVGA----------------DVYRPAALEQLQQLGQQIGVPVY   71 (211)
T ss_dssp             SSEEEEEECS---CCC----HHHHHHHHHHHTTCCEEEEEC----------------CCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEEE----------------ECCCCCHHHHHHHHCCCCCCCEE
T ss_conf             9989999899---9999899999999999977993699972----------------02355156789874014684223


Q ss_pred             CCCCHHHHH-------HHHCCCCCCEEEECCC
Q ss_conf             652012256-------6410245747997183
Q gi|254780401|r  119 VTSDRKIGV-------QMLLQEGVDIIIMDDG  143 (338)
Q Consensus       119 V~~~R~~~~-------~~~~~~~~diiIlDDG  143 (338)
                      +..+..+.+       ..+...+.|+|+.|=.
T Consensus        72 ~~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTa  103 (211)
T d1j8yf2          72 GEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTA  103 (211)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             02441024478999998740267736998537


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]