HHSEARCH alignment of GI: 254780401 and SCOP domain: d1nija1

Alignment
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.71  E-value=0.00019  Score=48.95  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=71.8

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf             89889982300078887489999999985247315987604578777755871456788770421233220576346520
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD  122 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~  122 (338)
                      |+||..|+-.-  |+|||.+...+.+.  ..|.+++||.--+|...     ++....  ...+++...+...|--+....
T Consensus         2 ~iPv~iitGFL--GaGKTTll~~lL~~--~~~~riaVI~Ne~g~~~-----iD~~~~--~~~~~~~~el~~gcicc~~~~   70 (222)
T d1nija1           2 PIAVTLLTGFL--GAGKTTLLRHILNE--QHGYKIAVIENEFGEVS-----VDDQLI--GDRATQIKTLTNGCICCSRSN   70 (222)
T ss_dssp             CEEEEEEEESS--SSSCHHHHHHHHHS--CCCCCEEEECSSCCSCC-----EEEEEE--CTTSCEEEEETTSCEEECTTS
T ss_pred             CCCEEEEEECC--CCCHHHHHHHHHHC--CCCCCEEEEEECCCCHH-----HHHHHH--CCCCCCEEEECCCCCEECCCH
T ss_conf             97889986488--89999999999856--78983799973664112-----233430--256652488438840000003


Q ss_pred             H-HHHHHHH-C-----CCCCCEEEE----------------CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf             1-2256641-0-----245747997----------------183223441230699996184335665537613652100
Q gi|254780401|r  123 R-KIGVQML-L-----QEGVDIIIM----------------DDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL  179 (338)
Q Consensus       123 R-~~~~~~~-~-----~~~~diiIl----------------DDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~  179 (338)
                      - ..+...+ .     ...+|.|+.                .|........-+--|+++|+.++...-.-.   ++   .
T Consensus        71 ~~~~~l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~---~~---~  144 (222)
T d1nija1          71 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF---TI---A  144 (222)
T ss_dssp             CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHC---HH---H
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH---HH---H
T ss_conf             67777889999986046776536786224210468999988520144421113402133355444443346---78---9


Q ss_pred             HHHHHHHHHHHHCCCCH
Q ss_conf             25566514544204412
Q gi|254780401|r  180 SRQLSYVDAILYVGNKK  196 (338)
Q Consensus       180 ~~~l~rad~vi~~~~~~  196 (338)
                      ...+..||++++||.+.
T Consensus       145 ~~Qi~~AD~ivlNK~Dl  161 (222)
T d1nija1         145 QSQVGYADRILLTKTDV  161 (222)
T ss_dssp             HHHHHTCSEEEEECTTT
T ss_pred             HHHHHHCCCCCCCCCCC
T ss_conf             99998688302446455


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]