RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide
4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
(338 letters)
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 37.5 bits (86), Expect = 0.003
Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 26/139 (18%)
Query: 44 IPVICVGGF--VMG----GTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL 96
+P++ ++G GTGKT AL + V KP + R+ +
Sbjct: 150 LPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVV 209
Query: 97 EKHSAY--------DVGDEPLLLARRAVTIVT---------SDRKIGVQMLLQEGVDIII 139
+ Y P A ++ R++ + + +D
Sbjct: 210 TEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 269
Query: 140 --MDDGFHSADLQADFSLI 156
+D L+
Sbjct: 270 NMLDQQGLGDQSMRIKHLL 288
>2g0t_A Conserved hypothetical protein; TM0796, structural
genomics, PSI, protein structure initiative, joint
center for structural genomics, JCSG; 2.67A {Thermotoga
maritima} (A:160-350)
Length = 191
Score = 30.5 bits (69), Expect = 0.29
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83
I V+ V G GK TA+ + + ++K +K GFL+ G
Sbjct: 9 KIKVVGVFG-TDCVVGKRTTAVQLWERALEKGIKAGFLATG 48
>1lqa_A TAS protein; TIM barrel, structure 2 function project,
S2F, structural genomics, oxidoreductase; HET: NDP;
1.60A {Escherichia coli} (A:)
Length = 346
Score = 30.5 bits (66), Expect = 0.31
Identities = 5/42 (11%), Positives = 13/42 (30%)
Query: 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85
+ + +G G A A + + + ++ Y
Sbjct: 13 VSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYP 54
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae} (B:1-228)
Length = 228
Score = 28.9 bits (63), Expect = 0.95
Identities = 9/161 (5%), Positives = 28/161 (17%), Gaps = 23/161 (14%)
Query: 1 MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT 60
+ + + ++ R+ + M G G
Sbjct: 54 PNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLG-- 111
Query: 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----- 115
+ A + S+ + L+ + +
Sbjct: 112 ---VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFH 168
Query: 116 --------VTIVTSDRKIGVQML-----LQEGVDIIIMDDG 143
+ + + + + I D
Sbjct: 169 GTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPE 209
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus
273-4} (A:1-119)
Length = 119
Score = 28.6 bits (64), Expect = 1.0
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 109 LLLARRAVTIVTSDRKIG---VQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSH 161
LL T+ SD I L Q GV I G+ A LQ L+VV +
Sbjct: 37 LLARALGHTVTGSDANIYPPXSTQLEQAGVTIEE---GYLIAHLQPAPDLVVVGNA 89
>2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics; 2.44A {Corynebacterium diphtheriae
NCTC13129} (A:)
Length = 180
Score = 28.6 bits (63), Expect = 1.1
Identities = 5/40 (12%), Positives = 9/40 (22%)
Query: 281 TTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVFENPDDLTN 320
+ + L K S E D + +
Sbjct: 5 SKKAELAELVKELAVVHGKVTLSSGKEADYYVDLRRATLH 44
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-
binding, ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A* (A:)
Length = 251
Score = 28.5 bits (62), Expect = 1.4
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80
+ + ++ V G G GKT A+A A +
Sbjct: 21 YFQSHMTILVVTG-TGTGVGKTVVCAALASAARQAGIDVAVC 61
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD,
NADH, isomerization, oxidoreductase; HET: NAD; 1.42A
{Homo sapiens} (A:1-271,A:459-500)
Length = 313
Score = 28.4 bits (62), Expect = 1.5
Identities = 12/45 (26%), Positives = 13/45 (28%), Gaps = 15/45 (33%)
Query: 57 TGKTPTALAIAKAVIDKNLKP---------------GFLSRGYGR 86
TG T I A NLK G+ G GR
Sbjct: 244 TGSTEIGRVIQVAAGSSNLKRVTLELGGFGAQSPFGGYKMSGSGR 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 27.8 bits (62), Expect = 2.2
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 300 FAKSMVIE--VDIVF 312
A M IE V++VF
Sbjct: 2 LADVMSIESLVEVVF 16
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW,
NIH, niaid, borellia burgdorferi, plasmid partition
protein, iodide, SAD phasing; 2.25A {Borrelia
burgdorferi} PDB: 3k9h_A (A:)
Length = 267
Score = 27.4 bits (59), Expect = 2.5
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 29 ISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69
+ ++ G + +I + GG GK+ +A+ +A
Sbjct: 12 LEAQTQGPGSMDNKKPKIITIASI-KGGVGKSTSAIILATL 51
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn
binding, protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A* (A:)
Length = 334
Score = 27.5 bits (59), Expect = 2.6
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEK 98
G GG GKT T+ ++A + LS +F K
Sbjct: 17 RWIFVGG-KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGK 68
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain,
TENA/THI-4/PQQC family, AT3G16990, structural genomics;
HET: HMH; 2.10A {Arabidopsis thaliana}
(A:1-24,A:126-221)
Length = 120
Score = 27.2 bits (60), Expect = 2.9
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 19 LYPISWIYSFISSKLMKRGQRLHAP 43
+ I +Y + ++ G +
Sbjct: 35 FWAIEAVYQESFAHCLEDGNKTPVE 59
>2obn_A Hypothetical protein; protein of unknown function DUF1611,
structural genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis
atcc 29413} (A:143-349)
Length = 207
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 58 GKTPTALAIAKAVIDKNLKPGFLSRG 83
GK T+L + A + + FL+ G
Sbjct: 23 GKXSTSLELHWAAKLRGWRSKFLATG 48
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold,
GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi}
(A:)
Length = 262
Score = 27.0 bits (58), Expect = 3.3
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 43 PIPVICVGGFVMGGTGKTPTALAIAK 68
++ G G+GKT +
Sbjct: 13 ASMIVVFVGTA--GSGKTTLTGEFGR 36
>1y2t_A Lectin; ABL, mushroom, sugar binding protein; 1.50A
{Agaricus bisporus} (A:)
Length = 142
Score = 26.8 bits (59), Expect = 3.9
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 303 SMVIEVDIVFENPDDLTNLVEMTVVSFANS 332
+ I + + P VE T +AN
Sbjct: 1 TYTISIRVYQTTPKGFFRPVERTNWKYANG 30
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP,
ARSA ATPase, ATP binding site, hydrolase; HET: ADP;
2.15A {Escherichia coli} (A:304-589)
Length = 286
Score = 26.8 bits (57), Expect = 4.8
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69
+ + + GG GKT A AIA
Sbjct: 17 DDIARNEHGLIMLMGK-GGVGKTTMAAAIAVR 47
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme,
structural genomics, NPPSFA; HET: PLP; 1.90A {Sulfolobus
tokodaii str} (A:22-54,A:332-419)
Length = 121
Score = 26.2 bits (58), Expect = 5.7
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 218 FDLSGKKVLAF-SGIADTEKFFTTVRQLGALIEQCYS--FGDHAHL---------SDKKI 265
+D+ G K L F SGI V ++G + + D + K
Sbjct: 16 YDVDGNKYLDFTSGIGVNPH----VNEIGKIFAEELQGLADDVRGIGLAWGLEYNEKKVR 71
Query: 266 AYLLDQAQQKGLILVTTAKDAMRL 289
++ ++ ++GL+L+ + A+R+
Sbjct: 72 DRIIGESFKRGLLLLPAGRSAIRV 95
>1z7d_A Ornithine aminotransferase; structural genomics consortium,
SGC, malaria; 2.10A {Plasmodium yoelii yoelii}
(A:1-77,A:333-433)
Length = 178
Score = 26.0 bits (57), Expect = 6.7
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 20/91 (21%)
Query: 218 FDLSGKKVL-AFSGIADTEKFFTTVRQLGALIEQCYS--FGDHAHLSD------------ 262
+D++ K+ S + + K +LG + D + D
Sbjct: 60 YDVNDKRYYDFLSAYS-SVKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF 118
Query: 263 ----KKIAYLLDQAQQKGLILVTTAKDAMRL 289
+ + + ++ GLI +RL
Sbjct: 119 KNELVNVLDICLKLKENGLITRDVHDKTIRL 149
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine
kinase; chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A* (A:)
Length = 271
Score = 26.2 bits (56), Expect = 6.7
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 21 PISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69
PIS + I S +M VI G GK+ A +A A
Sbjct: 61 PISEKFRGIRSNIMFANPDSAVQSIVITSEA---PGAGKSTIAANLAVA 106
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding
protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
(A:)
Length = 142
Score = 25.6 bits (56), Expect = 8.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 303 SMVIEVDIVFENPDDLTNLVEMTVVSFANS 332
+ I V + NP+ + VE TV +AN
Sbjct: 2 TYKITVRVYQTNPNAFFHPVEKTVWKYANG 31
>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural
genomics, JCSG, joint center for structural genomics,
PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm
4304} (A:)
Length = 201
Score = 25.8 bits (56), Expect = 9.3
Identities = 5/47 (10%), Positives = 10/47 (21%), Gaps = 5/47 (10%)
Query: 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85
V+ VGG + + + N +
Sbjct: 154 GAIPIEEVVAVGG-----RSRGADTAVVIRPAHXNNFFDAEIKEIIC 195
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotransferase;
ARGD, pyridoxal 5'-phosphate, arginine metabolism,
lysine biosynthesis; HET: PLP; 1.91A {Salmonella
typhimurium LT2} PDB: 2pb0_A* (A:1-69,A:319-420)
Length = 171
Score = 25.6 bits (56), Expect = 9.6
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 21/93 (22%)
Query: 218 FDLSGKKVL-AFSGIA-DTEKFFTTVRQLGALIEQCYS--FGDHAHLSD----------- 262
+D GK+ + GIA T + + Q SD
Sbjct: 52 WDQQGKEYIDFAGGIAVTTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAE 111
Query: 263 ------KKIAYLLDQAQQKGLILVTTAKDAMRL 289
+ L + G++++ D MR
Sbjct: 112 LKPKYKGRARDFLYAGAEAGVMVLNAGADVMRF 144
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0389 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,542,615
Number of extensions: 113514
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 29
Length of query: 338
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 249
Effective length of database: 1,947,404
Effective search space: 484903596
Effective search space used: 484903596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.9 bits)