RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] (338 letters) >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 37.5 bits (86), Expect = 0.003 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 26/139 (18%) Query: 44 IPVICVGGF--VMG----GTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL 96 +P++ ++G GTGKT AL + V KP + R+ + Sbjct: 150 LPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVV 209 Query: 97 EKHSAY--------DVGDEPLLLARRAVTIVT---------SDRKIGVQMLLQEGVDIII 139 + Y P A ++ R++ + + +D Sbjct: 210 TEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 269 Query: 140 --MDDGFHSADLQADFSLI 156 +D L+ Sbjct: 270 NMLDQQGLGDQSMRIKHLL 288 >2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} (A:160-350) Length = 191 Score = 30.5 bits (69), Expect = 0.29 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 I V+ V G GK TA+ + + ++K +K GFL+ G Sbjct: 9 KIKVVGVFG-TDCVVGKRTTAVQLWERALEKGIKAGFLATG 48 >1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural genomics, oxidoreductase; HET: NDP; 1.60A {Escherichia coli} (A:) Length = 346 Score = 30.5 bits (66), Expect = 0.31 Identities = 5/42 (11%), Positives = 13/42 (30%) Query: 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 + + +G G A A + + + ++ Y Sbjct: 13 VSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYP 54 >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (B:1-228) Length = 228 Score = 28.9 bits (63), Expect = 0.95 Identities = 9/161 (5%), Positives = 28/161 (17%), Gaps = 23/161 (14%) Query: 1 MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT 60 + + + ++ R+ + M G G Sbjct: 54 PNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLG-- 111 Query: 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----- 115 + A + S+ + L+ + + Sbjct: 112 ---VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFH 168 Query: 116 --------VTIVTSDRKIGVQML-----LQEGVDIIIMDDG 143 + + + + + I D Sbjct: 169 GTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPE 209 >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} (A:1-119) Length = 119 Score = 28.6 bits (64), Expect = 1.0 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 109 LLLARRAVTIVTSDRKIG---VQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSH 161 LL T+ SD I L Q GV I G+ A LQ L+VV + Sbjct: 37 LLARALGHTVTGSDANIYPPXSTQLEQAGVTIEE---GYLIAHLQPAPDLVVVGNA 89 >2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129} (A:) Length = 180 Score = 28.6 bits (63), Expect = 1.1 Identities = 5/40 (12%), Positives = 9/40 (22%) Query: 281 TTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVFENPDDLTN 320 + + L K S E D + + Sbjct: 5 SKKAELAELVKELAVVHGKVTLSSGKEADYYVDLRRATLH 44 >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* (A:) Length = 251 Score = 28.5 bits (62), Expect = 1.4 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%) Query: 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 + + ++ V G G GKT A+A A + Sbjct: 21 YFQSHMTILVVTG-TGTGVGKTVVCAALASAARQAGIDVAVC 61 >1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} (A:1-271,A:459-500) Length = 313 Score = 28.4 bits (62), Expect = 1.5 Identities = 12/45 (26%), Positives = 13/45 (28%), Gaps = 15/45 (33%) Query: 57 TGKTPTALAIAKAVIDKNLKP---------------GFLSRGYGR 86 TG T I A NLK G+ G GR Sbjct: 244 TGSTEIGRVIQVAAGSSNLKRVTLELGGFGAQSPFGGYKMSGSGR 288 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.8 bits (62), Expect = 2.2 Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 2/15 (13%) Query: 300 FAKSMVIE--VDIVF 312 A M IE V++VF Sbjct: 2 LADVMSIESLVEVVF 16 >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A (A:) Length = 267 Score = 27.4 bits (59), Expect = 2.5 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 29 ISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69 + ++ G + +I + GG GK+ +A+ +A Sbjct: 12 LEAQTQGPGSMDNKKPKIITIASI-KGGVGKSTSAIILATL 51 >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* (A:) Length = 334 Score = 27.5 bits (59), Expect = 2.6 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEK 98 G GG GKT T+ ++A + LS +F K Sbjct: 17 RWIFVGG-KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGK 68 >2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, structural genomics; HET: HMH; 2.10A {Arabidopsis thaliana} (A:1-24,A:126-221) Length = 120 Score = 27.2 bits (60), Expect = 2.9 Identities = 3/25 (12%), Positives = 9/25 (36%) Query: 19 LYPISWIYSFISSKLMKRGQRLHAP 43 + I +Y + ++ G + Sbjct: 35 FWAIEAVYQESFAHCLEDGNKTPVE 59 >2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413} (A:143-349) Length = 207 Score = 27.3 bits (61), Expect = 3.3 Identities = 8/26 (30%), Positives = 13/26 (50%) Query: 58 GKTPTALAIAKAVIDKNLKPGFLSRG 83 GK T+L + A + + FL+ G Sbjct: 23 GKXSTSLELHWAAKLRGWRSKFLATG 48 >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} (A:) Length = 262 Score = 27.0 bits (58), Expect = 3.3 Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 2/26 (7%) Query: 43 PIPVICVGGFVMGGTGKTPTALAIAK 68 ++ G G+GKT + Sbjct: 13 ASMIVVFVGTA--GSGKTTLTGEFGR 36 >1y2t_A Lectin; ABL, mushroom, sugar binding protein; 1.50A {Agaricus bisporus} (A:) Length = 142 Score = 26.8 bits (59), Expect = 3.9 Identities = 7/30 (23%), Positives = 11/30 (36%) Query: 303 SMVIEVDIVFENPDDLTNLVEMTVVSFANS 332 + I + + P VE T +AN Sbjct: 1 TYTISIRVYQTTPKGFFRPVERTNWKYANG 30 >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:304-589) Length = 286 Score = 26.8 bits (57), Expect = 4.8 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%) Query: 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69 + + + GG GKT A AIA Sbjct: 17 DDIARNEHGLIMLMGK-GGVGKTTMAAAIAVR 47 >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA; HET: PLP; 1.90A {Sulfolobus tokodaii str} (A:22-54,A:332-419) Length = 121 Score = 26.2 bits (58), Expect = 5.7 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 16/84 (19%) Query: 218 FDLSGKKVLAF-SGIADTEKFFTTVRQLGALIEQCYS--FGDHAHL---------SDKKI 265 +D+ G K L F SGI V ++G + + D + K Sbjct: 16 YDVDGNKYLDFTSGIGVNPH----VNEIGKIFAEELQGLADDVRGIGLAWGLEYNEKKVR 71 Query: 266 AYLLDQAQQKGLILVTTAKDAMRL 289 ++ ++ ++GL+L+ + A+R+ Sbjct: 72 DRIIGESFKRGLLLLPAGRSAIRV 95 >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} (A:1-77,A:333-433) Length = 178 Score = 26.0 bits (57), Expect = 6.7 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 20/91 (21%) Query: 218 FDLSGKKVL-AFSGIADTEKFFTTVRQLGALIEQCYS--FGDHAHLSD------------ 262 +D++ K+ S + + K +LG + D + D Sbjct: 60 YDVNDKRYYDFLSAYS-SVKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF 118 Query: 263 ----KKIAYLLDQAQQKGLILVTTAKDAMRL 289 + + + ++ GLI +RL Sbjct: 119 KNELVNVLDICLKLKENGLITRDVHDKTIRL 149 >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:) Length = 271 Score = 26.2 bits (56), Expect = 6.7 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 3/49 (6%) Query: 21 PISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69 PIS + I S +M VI G GK+ A +A A Sbjct: 61 PISEKFRGIRSNIMFANPDSAVQSIVITSEA---PGAGKSTIAANLAVA 106 >2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A* (A:) Length = 142 Score = 25.6 bits (56), Expect = 8.8 Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 303 SMVIEVDIVFENPDDLTNLVEMTVVSFANS 332 + I V + NP+ + VE TV +AN Sbjct: 2 TYKITVRVYQTNPNAFFHPVEKTVWKYANG 31 >1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} (A:) Length = 201 Score = 25.8 bits (56), Expect = 9.3 Identities = 5/47 (10%), Positives = 10/47 (21%), Gaps = 5/47 (10%) Query: 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 V+ VGG + + + N + Sbjct: 154 GAIPIEEVVAVGG-----RSRGADTAVVIRPAHXNNFFDAEIKEIIC 195 >2pb2_A Acetylornithine/succinyldiaminopimelate aminotransferase; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis; HET: PLP; 1.91A {Salmonella typhimurium LT2} PDB: 2pb0_A* (A:1-69,A:319-420) Length = 171 Score = 25.6 bits (56), Expect = 9.6 Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 21/93 (22%) Query: 218 FDLSGKKVL-AFSGIA-DTEKFFTTVRQLGALIEQCYS--FGDHAHLSD----------- 262 +D GK+ + GIA T + + Q SD Sbjct: 52 WDQQGKEYIDFAGGIAVTTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAE 111 Query: 263 ------KKIAYLLDQAQQKGLILVTTAKDAMRL 289 + L + G++++ D MR Sbjct: 112 LKPKYKGRARDFLYAGAEAGVMVLNAGADVMRF 144 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.139 0.409 Gapped Lambda K H 0.267 0.0389 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,542,615 Number of extensions: 113514 Number of successful extensions: 438 Number of sequences better than 10.0: 1 Number of HSP's gapped: 437 Number of HSP's successfully gapped: 29 Length of query: 338 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 249 Effective length of database: 1,947,404 Effective search space: 484903596 Effective search space used: 484903596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.9 bits)