RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] (338 letters) >d1tlya_ f.4.6.1 (A:) Nucleoside-specific channel-forming protein tsx (NupA) {Escherichia coli [TaxId: 562]} Length = 267 Score = 34.1 bits (78), Expect = 0.019 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 185 YVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFD-LSGKKVLAFSGIAD 233 Y DA ++ G + + S F +++PR + D L+ L+F + Sbjct: 45 YADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTD-LSFGPFKE 93 >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 Score = 30.7 bits (69), Expect = 0.18 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%) Query: 101 AYDVGD----EPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQAD 152 G EP+ ++ +V + V + E D ++ D G S + + Sbjct: 95 GLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESSPNPTVE 150 >d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 511 Score = 28.1 bits (62), Expect = 1.1 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 223 KKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT 282 VL F A+ F TT+R LG L+ Y D + +K + L++A G L Sbjct: 84 NDVLDFDIDAEVNVFETTIRMLGGLLS-AYHLSDVLEVGNKTV--YLNKAIDLGDRLALA 140 Query: 283 AKD 285 Sbjct: 141 FLS 143 >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237 Score = 28.1 bits (61), Expect = 1.2 Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 21/120 (17%) Query: 46 VICVGGFVMGGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSRISFRVDL 96 +I + GGTGKT ++ A +D +L LS G D+ Sbjct: 4 IISIVSGK-GGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDV 62 Query: 97 -----------EKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145 +V P + V + V L++ D I++D Sbjct: 63 LAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAG 122 >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 222 Score = 27.6 bits (60), Expect = 1.5 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 4/48 (8%) Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI 90 PI V + GF+ G GKT I K + +G S Sbjct: 2 PIAVTLLTGFL--GAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVD 45 >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 Score = 27.3 bits (59), Expect = 1.8 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%) Query: 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRL 289 A +F + VR G D+ I L+ A+ KG++L ++R Sbjct: 386 ARYPQFISRVRGRGTFCS--------FDTPDESIRNKLISIARNKGVMLGGCGDKSIRF 436 >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296 Score = 27.3 bits (59), Expect = 2.1 Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 29/284 (10%) Query: 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK--------PGFLSRGYGRKSRIS 91 L P + G GG GKT + A A + ++ + + + + + + Sbjct: 4 LQNIPPYLFFTG--KGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNT 61 Query: 92 FRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQA 151 + + +P A++ + K + + ++ + Sbjct: 62 IQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFD 121 Query: 152 DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAK 211 +F+ ++ ++ + R L A + +S K Sbjct: 122 EFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEK 181 Query: 212 LKPRLTFDLSGKKVLAFSG-----------IADTEKFFTTVRQ-----LGALIEQCYSFG 255 + + + + + + + + + +I Sbjct: 182 QREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKT 241 Query: 256 DHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEI 299 + ++ +A + + +Q+ L + + + + Sbjct: 242 EA---ANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNM 282 >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232 Score = 26.7 bits (57), Expect = 2.7 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 9/57 (15%) Query: 55 GGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAY 102 GGTGKT + A ++D ++ L G + ++ A Sbjct: 11 GGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEAR 67 >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} Length = 338 Score = 26.7 bits (59), Expect = 2.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 I V+ V G GK TA+ + + ++K +K GFL+ G Sbjct: 156 KIKVVGVFGTDCV-VGKRTTAVQLWERALEKGIKAGFLATG 195 >d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]} Length = 333 Score = 26.6 bits (57), Expect = 3.0 Identities = 9/36 (25%), Positives = 13/36 (36%) Query: 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 I +G + +GGT T + I L G Sbjct: 13 ASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGI 48 >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Score = 26.3 bits (56), Expect = 3.7 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 3/50 (6%) Query: 25 IYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 + ++L G L + G G GKT A K V + Sbjct: 28 LARIYLNRL-LSGAGLSDVNMIYGSIG--RVGIGKTTLAKFTVKRVSEAA 74 >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 Score = 26.2 bits (57), Expect = 4.2 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 8/55 (14%) Query: 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRL 289 VR +G ++ L +K Y+ ++ ++ + +R Sbjct: 318 SPKIREVRGMGLMV--------GLELKEKAAPYIARLEKEHRVLALQAGPTVIRF 364 >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Score = 26.2 bits (57), Expect = 4.5 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 25 IYSFISSKLMKRGQRLHAPIP--VICVGGFVMGGTGKTPTALAIAKAVIDK 73 + + + ++ V G G +GKTP A+ +A+ K Sbjct: 102 LTGELVGCSPVVAEFGGHRYASGMVIVTG--KGNSGKTPLVHALGEALGGK 150 >d1y2ta_ b.97.1.2 (A:) TF antigen-binding lectin {Common mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 142 Score = 26.0 bits (57), Expect = 5.0 Identities = 7/31 (22%), Positives = 11/31 (35%) Query: 303 SMVIEVDIVFENPDDLTNLVEMTVVSFANSN 333 + I + + P VE T +AN Sbjct: 1 TYTISIRVYQTTPKGFFRPVERTNWKYANGG 31 >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279 Score = 25.7 bits (55), Expect = 5.2 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 12/95 (12%) Query: 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR 114 GG GKT A AIA + D + D H + + L Sbjct: 29 GGVGKTTMAAAIAVRLADMGFDVHLTT------------SDPAAHLSMTLNGSLNNLQVS 76 Query: 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADL 149 + + +L +G ++ DL Sbjct: 77 RIDPHEETERYRQHVLETKGKELDEAGKRLLEEDL 111 >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Length = 351 Score = 25.1 bits (53), Expect = 8.8 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 55 GGTGK--TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH 99 GGTG P LA+A ++ + + +L ++ + + +E Sbjct: 8 GGTGGHVFP-GLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEID 53 >d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 494 Score = 25.0 bits (54), Expect = 8.9 Identities = 8/21 (38%), Positives = 8/21 (38%) Query: 57 TGKTPTALAIAKAVIDKNLKP 77 TG T I A NLK Sbjct: 238 TGSTEIGRVIQVAAGSSNLKR 258 >d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 154 Score = 25.1 bits (55), Expect = 9.3 Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 2/22 (9%) Query: 155 LIVVNSHRGLGNGLVF--PAGP 174 + VV+ G + F G Sbjct: 47 VAVVSERHGNPARITFLDERGG 68 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.139 0.409 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,249,836 Number of extensions: 58033 Number of successful extensions: 193 Number of sequences better than 10.0: 1 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 21 Length of query: 338 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 252 Effective length of database: 1,226,816 Effective search space: 309157632 Effective search space used: 309157632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.5 bits)