HHsearch alignment for GI: 254780402 and conserved domain: COG0438
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane].
Probab=98.10 E-value=0.00074 Score=45.02 Aligned_cols=270 Identities=20% Similarity=0.163 Sum_probs=136.1
Q ss_pred CEEEEEECCCCHH---HHHHHHHHCCCCEEEEEECCCC-------CCC-CCCH--HHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf 2035640476214---6788874224550586412665-------421-2100--1111233102644236641577888
Q gi|254780402|r 129 PDCMILSESDIWP---LTVFELSKQRIPQVLVNARMSR-------RSF-KNWK--TVLSFSKKIFSQFSLVIVQSERYFR 195 (440)
Q Consensus 129 P~~~i~~e~ElWP---nli~~~~~~~ip~~linarls~-------~S~-~~~~--~~~~l~~~~~~~~~~i~~qs~~~~~ 195 (440)
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (381)
T COG0438 84 YDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKE 163 (381)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 50898602112320267899988617867999703431000000001124578999999987642144599994588899
Q ss_pred HHHHHCCCC-EEEECCCCCCCCCCCCCHHHHHHHHHHCCC---CCEEECCCCCC-CCCCCCCCCCCCCCCC-CCEEEEEE
Q ss_conf 998608850-587204310123442212568999986179---86175046553-3210000000000123-41248897
Q gi|254780402|r 196 RYKELGAQK-LIVSGNLKIDTESLPCDKELLSLYQESIAG---RYTWAAISTFE-GEEDKAVYVHNFIKCR-TDVLTIIV 269 (440)
Q Consensus 196 rl~~lG~~~-i~v~GnlK~d~~~~~~~~~~~~~~~~~~~~---r~v~vagSth~-~EE~~il~a~~~l~~~-~~~~lIIv 269 (440)
T Consensus 164 ~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~ 236 (381)
T COG0438 164 LLEALGVPNKIVVIPNG-IDTEKFAPA------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIV 236 (381)
T ss_pred HHHHHCCCCCEEEECCC-CCHHHCCCC------CCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99984677887997588-587874700------01445356987999964886547999999999985321586489999
Q ss_pred ECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCC--CCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCC
Q ss_conf 0552114788877653001011001344444664167506765--20255422082066135544454583768961994
Q gi|254780402|r 270 PRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIG--EMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCA 347 (440)
Q Consensus 270 PRhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~G--eL~~lY~~AdiafVGGSl~~~GGhN~lEpaa~G~p 347 (440)
T Consensus 237 g~~~~~~~~~~~~~~~~~~-------------~~~v~~~g~~~~~~~~~~~~~~~~-~v~ps~~e~~~~~~~Ea~a~g~p 302 (381)
T COG0438 237 GDGPERREELEKLAKKLGL-------------EDNVKFLGYVPDEELAELLASADV-FVLPSLSEGFGLVLLEAMAAGTP 302 (381)
T ss_pred EECCCHHHHHHHHHHHCCC-------------CCCEEECCCCCHHHHHHHHHHCCE-EEECCCCCCCCHHHHHHHHHCCE
T ss_conf 9534128899999997088-------------887899177898999999972809-99178644558899999984986
Q ss_pred EEECCCCCCHHHHHHHHHHCCCEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999898443799999999789869957--98999999999958989999999999999970455699999999975237
Q gi|254780402|r 348 ILSGPNVENFRDIYRRMVSSGAVRIVE--EVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDSYVNP 424 (440)
Q Consensus 348 Vi~GP~~~nf~e~~~~L~~~g~~~~v~--d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~~i~~~l~~ 424 (440)
T Consensus 303 vi~~~~~-~~~~~~~---~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 376 (381)
T COG0438 303 VIASDVG-GIPEVVE---DGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVE-EEFSWERIAEQLLELYEE 376 (381)
T ss_pred EEECCCC-CHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHH
T ss_conf 9995899-8688430---697069988999999999999998697999999999999999-866999999999999999