HHsearch alignment for GI: 254780402 and conserved domain: COG0859
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].
Probab=97.32 E-value=0.016 Score=36.30 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=124.5
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCC-CC---C---HHHHHHHHHHCC
Q ss_conf 7799981789999999999999986199899996277630012101477416885055-72---0---134455744202
Q gi|254780402|r 57 PLIWFHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPL-DI---Q---PAVSRFLKYWKP 129 (440)
Q Consensus 57 ~~IW~HaaSvGE~~~a~pli~~l~~~~~~iliT~~T~tg~~~~~~~~~~~~~~~y~P~-D~---~---~~~~~fl~~~~P 129 (440)
T Consensus 3 kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~~~~~~~~~~~~l~~~lr~~~y 82 (334)
T COG0859 3 KILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKKKGLGLKERLALLRTLRKERY 82 (334)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 79999557401377699999999987899779999554314677559524168511211212138999999998314686
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH----CCCCE
Q ss_conf 03564047621467888742245505864126654212100111123310264423664157788899860----88505
Q gi|254780402|r 130 DCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKEL----GAQKL 205 (440)
Q Consensus 130 ~~~i~~e~ElWPnli~~~~~~~ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~~~rl~~l----G~~~i 205 (440)
T Consensus 83 D~vidl~~~~ksa~l~~~~--~~~~r~g~~~---~~~r-~----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 150 (334)
T COG0859 83 DAVIDLQGLLKSALLALLL--GIPFRIGFDK---KSAR-E----LLLNKFYPR--LDKPEGQHVVERYLALLEDLGLYPP 150 (334)
T ss_pred CEEEECHHHHHHHHHHHHH--CCCCEECCCC---HHHH-H----HHHHHCCCC--CCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 7899740258899999973--8983631450---7777-7----777630244--5654024599999999876079876
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEC--C-CC-----CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHH
Q ss_conf 87204310123442212568999986179861750--4-65-----5332100000000001234124889705521147
Q gi|254780402|r 206 IVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAA--I-ST-----FEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCD 277 (440)
Q Consensus 206 ~v~GnlK~d~~~~~~~~~~~~~~~~~~~~r~v~va--g-St-----h~~EE~~il~a~~~l~~~~~~~lIIvPRhpeR~~ 277 (440)
T Consensus 151 ~----~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~pg~s~~~~K~wp~e--~~~~l~~~l~~~~-~~Vvl~g-~~~e~e 221 (334)
T COG0859 151 P----EPQLDFPLPRPPIELAKNLAKFD-RPYIVINPGASRGSAKRWPLE--HYAELAELLIAKG-YQVVLFG-GPDEEE 221 (334)
T ss_pred C----CCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCHH--HHHHHHHHHHHCC-CEEEEEE-CHHHHH
T ss_conf 6----77555455547888986542037-987999647346677889999--9999999999769-9899940-878999
Q ss_pred HHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCCEEEECCCCCCC-CCCHHHHHHHCCCEE--ECCCC
Q ss_conf 888776530010110013444446641675067652025542208206613554445-458376896199499--98984
Q gi|254780402|r 278 AIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASG-GQNPLEAAMLGCAIL--SGPNV 354 (440)
Q Consensus 278 ~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~~lY~~AdiafVGGSl~~~G-GhN~lEpaa~G~pVi--~GP~~ 354 (440)
T Consensus 222 ~~~~i~~~~~~~~~-------------l~~k~sL~e~~~li~~a~l-~I~~---DSg~~Hl---AaA~~~P~I~iyg~t~ 281 (334)
T COG0859 222 RAEEIAKGLPNAVI-------------LAGKTSLEELAALIAGADL-VIGN---DSGPMHL---AAALGTPTIALYGPTS 281 (334)
T ss_pred HHHHHHHHCCCCCC-------------CCCCCCHHHHHHHHHCCCE-EECC---CCHHHHH---HHHCCCCEEEEECCCC
T ss_conf 99999973676612-------------1799999999999966989-9914---8879999---9873998899988987
Q ss_pred CC
Q ss_conf 43
Q gi|254780402|r 355 EN 356 (440)
Q Consensus 355 ~n 356 (440)
T Consensus 282 ~~ 283 (334)
T COG0859 282 PA 283 (334)
T ss_pred CC
T ss_conf 55