HHsearch alignment for GI: 254780402 and conserved domain: PRK10422
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional.
Probab=97.96 E-value=0.0019 Score=42.26 Aligned_cols=264 Identities=12% Similarity=0.125 Sum_probs=114.4
Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCH---HHHHH------
Q ss_conf 888877999817899999999999999861998999962776300121014774168850557201---34455------
Q gi|254780402|r 53 RPIGPLIWFHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQP---AVSRF------ 123 (440)
Q Consensus 53 ~~~~~~IW~HaaSvGE~~~a~pli~~l~~~~~~iliT~~T~tg~~~~~~~~~~~~~~~y~P~D~~~---~~~~f------ 123 (440)
T Consensus 3 ~~~kkILIir~~~iGD~il~tP~i~~Lk~~~P~a~I~~l~~~~~~~ll~~~P~id~i~~~~~k~~~~~~~~~~~~~l~~~ 82 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSLIKV 82 (352)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89977999758860499999999999999889988999978047999833999627988667554456779999999999
Q ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCC
Q ss_conf 74420203564047621467888742245505864126654212100111123310264423664157788899860885
Q gi|254780402|r 124 LKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKELGAQ 203 (440)
Q Consensus 124 l~~~~P~~~i~~e~ElWPnli~~~~~~~ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~~~rl~~lG~~ 203 (440)
T Consensus 83 Lr~~~yD~vi~l~~~~~~~~l~~~--~~~~~~ig-~~~~~~~~~~~---~~~~~~~~~~~~-~-h~v~~~l~ll~~l~~~ 154 (352)
T PRK10422 83 LRANKYDLIVNLTDQWMVALLVRL--LNARVKIS-QDYHHRQSAFW---RKSFTHLVPLQG-G-HVVESNLSVLTPLGLS 154 (352)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHH--HCCCEEEC-CCCCCCHHHHH---HHHHCCCCCCCC-H-HHHHHHHHHHHHCCCC
T ss_conf 855488778866766499999998--38985865-66652101455---655314688754-1-5999999998646998
Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEC-CCC-----CCCCCCCCCCCCCCCCCC-CCEEEEEEECCCC
Q ss_conf 0587204310123442212568999986--179861750-465-----533210000000000123-4124889705521
Q gi|254780402|r 204 KLIVSGNLKIDTESLPCDKELLSLYQES--IAGRYTWAA-IST-----FEGEEDKAVYVHNFIKCR-TDVLTIIVPRHPR 274 (440)
Q Consensus 204 ~i~v~GnlK~d~~~~~~~~~~~~~~~~~--~~~r~v~va-gSt-----h~~EE~~il~a~~~l~~~-~~~~lIIvPRhpe 274 (440)
T Consensus 155 ~~~----~~~~l~~~~~~~~~~~~~l~~~~~~~~~ivi~pga~~~~K~Wp~e-~-~a~l~~~L~~~g~~vvl~ggp~~~e 228 (352)
T PRK10422 155 SLV----KETTMSYRPESWKRMRRQLDHLGVTQNYVVIQPTARQIFKCWDND-K-FSAVIDALQARGYEVVLTSGPAKDD 228 (352)
T ss_pred CCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHH-H-HHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf 667----555667887899999987674488898799967899856779999-9-9999999984799199972898899
Q ss_pred H--HHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEE--CCCCCCHHHHHHCCCEEEECCCCCCC-CCCHHHHHHHCCCEE
Q ss_conf 1--478887765300101100134444466416750--67652025542208206613554445-458376896199499
Q gi|254780402|r 275 R--CDAIERRLIAKGLKVARRSRGDVINAEVDIFLG--DTIGEMGFYLRMTEIAFIGRSFCASG-GQNPLEAAMLGCAIL 349 (440)
Q Consensus 275 R--~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~--Dt~GeL~~lY~~AdiafVGGSl~~~G-GhN~lEpaa~G~pVi 349 (440)
T Consensus 229 ~~~~~~i~~~~~~----------------~~v~~l~G~tsL~el~ali~~a~l-~I~n---DSGpmHl---AaAlg~P~V 285 (352)
T PRK10422 229 LACVNEIAQGCQT----------------PPVTALAGKTTFPELGALIDHAQL-FIGV---DSAPAHI---AAAVNTPLI 285 (352)
T ss_pred HHHHHHHHHHCCC----------------CCCEECCCCCCHHHHHHHHHHCCE-EEEC---CCHHHHH---HHHCCCCEE
T ss_conf 9999999974679----------------870423578889999999981787-5605---9818999---998299989
Q ss_pred --ECCC
Q ss_conf --9898
Q gi|254780402|r 350 --SGPN 353 (440)
Q Consensus 350 --~GP~ 353 (440)
T Consensus 286 alFGpT 291 (352)
T PRK10422 286 CLFGAT 291 (352)
T ss_pred EEECCC
T ss_conf 998999