HHsearch alignment for GI: 254780402 and conserved domain: TIGR02400
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]; InterPro: IPR012766 This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This entry excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This entry does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cut offs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see ).; GO: 0003825 alphaalpha-trehalose-phosphate synthase (UDP-forming) activity, 0005992 trehalose biosynthetic process.
Probab=95.02 E-value=0.3 Score=27.88 Aligned_cols=266 Identities=15% Similarity=0.180 Sum_probs=147.7
Q ss_pred HHHHHHHHHCCEEEEEECCC----CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHH----HHHHHCCCCCCEEEECC
Q ss_conf 34455744202035640476----21467888742245505864126654212100111----12331026442366415
Q gi|254780402|r 119 AVSRFLKYWKPDCMILSESD----IWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVL----SFSKKIFSQFSLVIVQS 190 (440)
Q Consensus 119 ~~~~fl~~~~P~~~i~~e~E----lWPnli~~~~~~~ip~~linarls~~S~~~~~~~~----~l~~~~~~~~~~i~~qs 190 (440)
T Consensus 130 FA~~~~~~~~~gD~~Wv-HDYHL~~lp~~LRe~~~~n~~iGFFLHiPfP-S~ei~~~lP~~~~~ll~gll~-yDLvGFqT 206 (476)
T TIGR02400 130 FAEALAPLLQPGDIVWV-HDYHLMLLPAMLRELGVENVKIGFFLHIPFP-SSEIYRTLPEWRRELLEGLLA-YDLVGFQT 206 (476)
T ss_pred HHHHHHHHCCCCCEEEE-ECCHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHCCHHHHHHHHHHHHH-CCCCCCCC
T ss_conf 99999986389989998-4414568999999717785300104178998-579985180579999999871-58302456
Q ss_pred HHHHHHHHH-----HCC---CC-EEE--ECCCCC----------------CCCCCCCCHHHHHHHHHHCCCCCEEECCCC
Q ss_conf 778889986-----088---50-587--204310----------------123442212568999986179861750465
Q gi|254780402|r 191 ERYFRRYKE-----LGA---QK-LIV--SGNLKI----------------DTESLPCDKELLSLYQESIAGRYTWAAIST 243 (440)
Q Consensus 191 ~~~~~rl~~-----lG~---~~-i~v--~GnlK~----------------d~~~~~~~~~~~~~~~~~~~~r~v~vagSt 243 (440)
T Consensus 207 ~~d~~nF~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~aFPIGID~~~f~~~a~~~~~~~~~~~l~~~l~~~k~i~GVDR 286 (476)
T TIGR02400 207 YEDARNFLSAVSRELGYETLENGVESGGGAGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLRGRKLIIGVDR 286 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 88999999999998511112662011775643369998874200779999873140038999999998379749998420
Q ss_pred ---CCCCCCCCCCCC-CCCCCCCCE-----EEEEEECCCCH--HHHHHHHHHHHCCHHHHHC-CCCCCCCCCEEEEECCC
Q ss_conf ---533210000000-000123412-----48897055211--4788877653001011001-34444466416750676
Q gi|254780402|r 244 ---FEGEEDKAVYVH-NFIKCRTDV-----LTIIVPRHPRR--CDAIERRLIAKGLKVARRS-RGDVINAEVDIFLGDTI 311 (440)
Q Consensus 244 ---h~~EE~~il~a~-~~l~~~~~~-----~lIIvPRhpeR--~~~i~~~l~~~gl~~~~~S-~~~~~~~~~~V~i~Dt~ 311 (440)
T Consensus 287 LDYsKG-~~~R~~AFe~fL~~~P~~rgkV~lvQIA~--PSR~~V~~Y~~Lr~~~~~~VGrING~fg~~~WtPi~Y~~~~~ 363 (476)
T TIGR02400 287 LDYSKG-LPERLKAFERFLEEHPEWRGKVTLVQIAV--PSRGDVEEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSY 363 (476)
T ss_pred CHHHCC-HHHHHHHHHHHHHHCHHHCCCEEEEEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 201122-77899999999874734207279999850--668887899999999999864542021788853678723888
Q ss_pred C--CCHHHHHHCCCEEEECCCCCCCCCCH--HHHHHHCCC----EEECCCCCCHHHHHHHHHHCCCEEEEC--CHHHHHH
Q ss_conf 5--20255422082066135544454583--768961994----999898443799999999789869957--9899999
Q gi|254780402|r 312 G--EMGFYLRMTEIAFIGRSFCASGGQNP--LEAAMLGCA----ILSGPNVENFRDIYRRMVSSGAVRIVE--EVGTLAD 381 (440)
Q Consensus 312 G--eL~~lY~~AdiafVGGSl~~~GGhN~--lEpaa~G~p----Vi~GP~~~nf~e~~~~L~~~g~~~~v~--d~~eL~~ 381 (440)
T Consensus 364 ~~~~L~aLYr~adV~LVTp-L--RDGMNLVAKEYVAaQ~~~~PGVLi---LSefAGAA~eL~---~ALlVNP~d~~g~a~ 434 (476)
T TIGR02400 364 PREELMALYRAADVGLVTP-L--RDGMNLVAKEYVAAQDPEDPGVLI---LSEFAGAAQELK---GALLVNPYDIEGMAD 434 (476)
T ss_pred CHHHHHHHHHHCCEEEECC-C--CCCCCHHHHHHHHCCCCCCCCCEE---CCHHHHHHHHHC---CCCCCCCCCHHHHHH
T ss_conf 8689999974103266545-6--567513535878528988478543---002666998850---156218978899999
Q ss_pred HHHHHHC--CHHHHHHHHHH
Q ss_conf 9999958--98999999999
Q gi|254780402|r 382 MVYSLLS--EPTIRYEMINA 399 (440)
Q Consensus 382 ~l~~ll~--d~~~~~~~~~~ 399 (440)
T Consensus 435 Ai~~AL~Mp~~eR~~R~~~l 454 (476)
T TIGR02400 435 AIARALTMPLEEREERHRAL 454 (476)
T ss_pred HHHHHHCCCHHHHHHHHHHH
T ss_conf 99998529988999999999