HHsearch alignment for GI: 254780402 and conserved domain: TIGR03492
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.57 E-value=8.3e-12 Score=97.20 Aligned_cols=336 Identities=15% Similarity=0.170 Sum_probs=204.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCHHHHCCCCCCEEEEECC---------C----CC--------CHHH
Q ss_conf 7899999999999999861998999962776--3001210147741688505---------5----72--------0134
Q gi|254780402|r 64 SSVGETMALIGLIPAIRSRHVNVLLTTMTAT--SAKVARKYLGQYAIHQYAP---------L----DI--------QPAV 120 (440)
Q Consensus 64 aSvGE~~~a~pli~~l~~~~~~iliT~~T~t--g~~~~~~~~~~~~~~~y~P---------~----D~--------~~~~ 120 (440)
T Consensus 5 NGhGEDl~a~~i~~~L~~~~p~~~v~alPLVG~G~ay~~~gi~iig~~~~lpSGGf~~~~~~~l~~Dl~~Gl~~~~~~q~ 84 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQW 84 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 76358899999999999629999669851347849999789948746643577462243677899999703699999999
Q ss_pred HHHHHHHC-CEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCC---------------CCCCHHHHHHHHHCC--CC
Q ss_conf 45574420-2035640476214678887422455058641266542---------------121001111233102--64
Q gi|254780402|r 121 SRFLKYWK-PDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRS---------------FKNWKTVLSFSKKIF--SQ 182 (440)
Q Consensus 121 ~~fl~~~~-P~~~i~~e~ElWPnli~~~~~~~ip~~linarls~~S---------------~~~~~~~~~l~~~~~--~~ 182 (440)
T Consensus 85 ~-~~~~~~~~~~~ilavGD~~pl~~A--~~sg~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~Pw-e~~lm~~~r 160 (396)
T TIGR03492 85 R-ALRKWAKKGDLIVAVGDIVPLLFA--WLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERWLMRSRR 160 (396)
T ss_pred H-HHHHHCCCCCEEEEECCHHHHHHH--HHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCHH-HHHHHCCCC
T ss_conf 9-999854458879996671888999--981898169970453236606877530123321551781677-999740966
Q ss_pred CCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-CCE-EECCCCCCCC---CCCCCCCCCC
Q ss_conf 4236641577888998608850587204310123442212568999986179-861-7504655332---1000000000
Q gi|254780402|r 183 FSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAG-RYT-WAAISTFEGE---EDKAVYVHNF 257 (440)
Q Consensus 183 ~~~i~~qs~~~~~rl~~lG~~~i~v~GnlK~d~~~~~~~~~~~~~~~~~~~~-r~v-~vagSth~~E---E~~il~a~~~ 257 (440)
T Consensus 161 c~~Vf~RD~lTA~~L~~~gi~-a~f~GnPmMD~l~~~~~~~-------~~~~~~~I~LLPGSR~pEa~~nl~~~L~a~~~ 232 (396)
T TIGR03492 161 CLAVFVRDRLTARDLRRQGVR-ASYLGNPMMDGLEPPERKP-------LLTGRFRIALLPGSRPPEAYRNLKLLLRALEA 232 (396)
T ss_pred CCEEECCCHHHHHHHHHCCCC-EEEECCCHHCCCCCCCCCC-------CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 529950558879999977996-4960873413788888766-------78878679995898859999879999999996
Q ss_pred CCCCCCEEEEEEECCCC-HHHHHHHHHHHHCCHHHHHCCCCC-CC--CCCEEEEECCCCCCHHHHHHCCCEEEECCCCCC
Q ss_conf 01234124889705521-147888776530010110013444-44--664167506765202554220820661355444
Q gi|254780402|r 258 IKCRTDVLTIIVPRHPR-RCDAIERRLIAKGLKVARRSRGDV-IN--AEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCAS 333 (440)
Q Consensus 258 l~~~~~~~lIIvPRhpe-R~~~i~~~l~~~gl~~~~~S~~~~-~~--~~~~V~i~Dt~GeL~~lY~~AdiafVGGSl~~~ 333 (440)
T Consensus 233 l~~~~~-~~f~~alap~l~~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~--~~~f~~~l~~adl~ia~------ 303 (396)
T TIGR03492 233 LPDSQP-FVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEILHWADLGIAM------ 303 (396)
T ss_pred HCCCCC-EEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEE--CCCHHHHHHHCHHHHHC------
T ss_conf 341488-699998689999899999999659700578654200010487689997--38489999855114443------
Q ss_pred CCCCHHHHHHHCCCEEE----CC-CCCCHHHHHHHHHHCCCEEEEC-CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf 54583768961994999----89-8443799999999789869957-989999999999589899999999999999704
Q gi|254780402|r 334 GGQNPLEAAMLGCAILS----GP-NVENFRDIYRRMVSSGAVRIVE-EVGTLADMVYSLLSEPTIRYEMINAAINEVKKM 407 (440)
Q Consensus 334 GGhN~lEpaa~G~pVi~----GP-~~~nf~e~~~~L~~~g~~~~v~-d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~ 407 (440)
T Consensus 304 AGTAteQ~vgLG~Pvv~l~g~GPQfT~~fA~~Q~RLL-G~sv~~~~~~p~~ia~~~~~lL~d~~~~~~~~~~gr~Rl-G~ 381 (396)
T TIGR03492 304 AGTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLL-GGSVFLASKNPEQAAQVVRQLLADPELLERCRRNGQERM-GP 381 (396)
T ss_pred CCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC
T ss_conf 7709999987189879972787277799999999862-753352689999999999998549999999999999855-88
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 556999999999752
Q gi|254780402|r 408 QGPLKITLRSLDSYV 422 (440)
Q Consensus 408 ~ga~~~~~~~i~~~l 422 (440)
T Consensus 382 ~Gas~RiA~~il~~L 396 (396)
T TIGR03492 382 PGASARIAESILKQL 396 (396)
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 658899999999519