HHsearch alignment for GI: 254780402 and conserved domain: pfam02684
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=99.31 E-value=1.3e-10 Score=89.47 Aligned_cols=301 Identities=14% Similarity=0.072 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHC----CCCCC--EEEEE------C--CCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 99999999998619989999627763001210----14774--16885------0--55720134455744202035640
Q gi|254780402|r 70 MALIGLIPAIRSRHVNVLLTTMTATSAKVARK----YLGQY--AIHQY------A--PLDIQPAVSRFLKYWKPDCMILS 135 (440)
Q Consensus 70 ~~a~pli~~l~~~~~~iliT~~T~tg~~~~~~----~~~~~--~~~~y------~--P~D~~~~~~~fl~~~~P~~~i~~ 135 (440)
T Consensus 12 ~~ga~Li~~Lk~~~p~i~~~--GvGG~~M~~~G~~~l~d~~~lsvmG~~evl~~l~~l~~~~~~~~~~i~~~~PD~vIlI 89 (373)
T pfam02684 12 ILGGELIQNLKEHYPNLRFI--GVGGPKMEAEGFESLANMEEISVMGFIEVLGRLFKLLKIYQKVVKNILKKKPDTLILI 89 (373)
T ss_pred HHHHHHHHHHHHCCCCCEEE--EECCHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999998309894899--9880899977995347727841401999998999999999999998742699889997
Q ss_pred CCCC-HHHHHHHHHHCCC--CEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 4762-1467888742245--505864126654212100111123310264423664157788899860885058720431
Q gi|254780402|r 136 ESDI-WPLTVFELSKQRI--PQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKELGAQKLIVSGNLK 212 (440)
Q Consensus 136 e~El-WPnli~~~~~~~i--p~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~~~rl~~lG~~~i~v~GnlK 212 (440)
T Consensus 90 D~pgFNlrlak~lkk~g~~ipvi~yV~------PqvWAWr~~R~k~i~~~~D~ll~IfPFE~~~y~~~gv~~-~fVGHPl 162 (373)
T pfam02684 90 DAPDFNLRLAKKLRKLGPKLKIIHYVS------PSVWAWRPKRAKIIAKYTDLLLAILPFEKGFFQKFGLDC-RYVGHPL 162 (373)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEC------CCEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCE-EECCCCH
T ss_conf 176155999999997199987899968------842212715899999999873128988789998609971-5759811
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEE-ECCCCCCCCCCCCC----CCCCCCC-CCCCEEEEEEECCCCHHHHHHH-HHHH
Q ss_conf 01234422125689999861798617-50465533210000----0000001-2341248897055211478887-7653
Q gi|254780402|r 213 IDTESLPCDKELLSLYQESIAGRYTW-AAISTFEGEEDKAV----YVHNFIK-CRTDVLTIIVPRHPRRCDAIER-RLIA 285 (440)
Q Consensus 213 ~d~~~~~~~~~~~~~~~~~~~~r~v~-vagSth~~EE~~il----~a~~~l~-~~~~~~lIIvPRhpeR~~~i~~-~l~~ 285 (440)
T Consensus 163 ~d~~~~~~~~~~~~~~-~~~~~~~~i~lLPGSR~~EI~~~lPi~l~aa~~l~~~~~~~~~~i-p~~~~~~~~~~~~~~~~ 240 (373)
T pfam02684 163 LDEIKLYKKRASAKEL-LIDHDEPILALLPGSRKGEIRRLLPPIQVAAQQLSSQFPNLKLLV-PLVNKKYEEQIEDTLAL 240 (373)
T ss_pred HHHHCCCCCHHHHHHH-CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHHHHHHH
T ss_conf 6540137765899974-689877557767888699999999999999999997689918999-65887899999999986
Q ss_pred HCCHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCEEECCCCCC---------
Q ss_conf 00101100134444466416750676520255422082066135544454583768961994999898443---------
Q gi|254780402|r 286 KGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVEN--------- 356 (440)
Q Consensus 286 ~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~~lY~~AdiafVGGSl~~~GGhN~lEpaa~G~pVi~GP~~~n--------- 356 (440)
T Consensus 241 ~~-------------~~~~i~~~--~~~~~~~~~~sd~al~~S------GTaTLE~al~~~P~vV~Yk~~~lty~i~k~l 299 (373)
T pfam02684 241 EN-------------CDVSLLEI--SGERYEAMFAADAALAKS------GTATLEAALAGTPMVVAYRVKPLTFFLAKRL 299 (373)
T ss_pred CC-------------CCCCEEEC--CCCHHHHHHHCCEEEECC------CHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
T ss_conf 49-------------99878980--572499998486501216------7699999981999899995778999999999
Q ss_pred -------------HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf -------------799999999789869957989999999999589899999999999999704
Q gi|254780402|r 357 -------------FRDIYRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKM 407 (440)
Q Consensus 357 -------------f~e~~~~L~~~g~~~~v~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~ 407 (440)
T Consensus 300 vkv~~isL~Nii~~k~ivPEllQ~~~-----t~~~ia~~~~~lL~d~~~~~~~~~~~~~~~~~l 358 (373)
T pfam02684 300 VKIDYISLPNIILNREIVPEFIQGEC-----DAHLEAIALLLLLLNGLKAKKQKDRCRKFKQLL 358 (373)
T ss_pred HCCCEEEHHHHHCCCCCCHHHHCCCC-----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 83895443488669986735647517-----899999999999679999999999999999998