HHsearch results for GI: 254780402 and protein with PDBid: 1vgv_A
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.41 E-value=2.4e-10 Score=86.21 Aligned_cols=331 Identities=17% Similarity=0.161 Sum_probs=185.7
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCC-CC--EEEEECCCCCCHHHHCCC------CCCEEEEECCCCCCH--------HHH
Q ss_conf 9998178999999999999998619-98--999962776300121014------774168850557201--------344
Q gi|254780402|r 59 IWFHASSVGETMALIGLIPAIRSRH-VN--VLLTTMTATSAKVARKYL------GQYAIHQYAPLDIQP--------AVS 121 (440)
Q Consensus 59 IW~HaaSvGE~~~a~pli~~l~~~~-~~--iliT~~T~tg~~~~~~~~------~~~~~~~y~P~D~~~--------~~~ 121 (440)
|-+=..+-.|+--..||+++|+++. .+ +++|- + -++...+.+ ++.......+-|... ...
T Consensus 3 i~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG-~--H~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~ 79 (384)
T 1vgv_A 3 VLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTA-Q--HREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLK 79 (384)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHSTTCEEEEEECC-S--SGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-C--CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999734719999999999973899888999938-9--88999999986297877452468899999999999999999
Q ss_pred HHHHHHCCEEEEEECCCCHHHHH--HHHHHCCCCEEEEEECCCCCCCCC-CHHHHHHHHHCCCCC-CEEEECCHHHHHHH
Q ss_conf 55744202035640476214678--887422455058641266542121-001111233102644-23664157788899
Q gi|254780402|r 122 RFLKYWKPDCMILSESDIWPLTV--FELSKQRIPQVLVNARMSRRSFKN-WKTVLSFSKKIFSQF-SLVIVQSERYFRRY 197 (440)
Q Consensus 122 ~fl~~~~P~~~i~~e~ElWPnli--~~~~~~~ip~~linarls~~S~~~-~~~~~~l~~~~~~~~-~~i~~qs~~~~~rl 197 (440)
+++...+||++++.. |-.=.+- ..+...+||++-+-|-+ +|..- +...--..|.+..++ +..++.++.+++|+
T Consensus 80 ~~l~~~kpD~v~v~G-Dr~e~la~a~aa~~~~Ipi~HiegG~--~s~~~~~~~~de~~R~~i~klS~lhf~~~~~~~~rL 156 (384)
T 1vgv_A 80 PILAEFKPDVVLVHG-DTTTTLATSLAAFYQRIPVGHVEAGL--RTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNL 156 (384)
T ss_dssp HHHHHHCCSEEEEET-TCHHHHHHHHHHHTTTCCEEEESCCC--CCSCTTSSTTHHHHHHHHHTTCSEEEESSHHHHHHH
T ss_pred HHHHHCCCCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCHHHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf 999855999899968-98437669999997599789984144--567877788067653011321238874358999999
Q ss_pred HHHCC--CCEEEECCCCCCCCCCCCCH----H-HHHHHHHH---CCCCCEEECCCCCCCCC-----CCCCCCCCCCCCCC
Q ss_conf 86088--50587204310123442212----5-68999986---17986175046553321-----00000000001234
Q gi|254780402|r 198 KELGA--QKLIVSGNLKIDTESLPCDK----E-LLSLYQES---IAGRYTWAAISTFEGEE-----DKAVYVHNFIKCRT 262 (440)
Q Consensus 198 ~~lG~--~~i~v~GnlK~d~~~~~~~~----~-~~~~~~~~---~~~r~v~vagSth~~EE-----~~il~a~~~l~~~~ 262 (440)
.++|. ++|.++|++-.|......+. . ........ +....-++....|+.|. +.++.+...+....
T Consensus 157 ~~~G~~~~~I~~vG~~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~t~h~~~~~~~~~~~i~~~l~~~~~~~ 236 (384)
T 1vgv_A 157 LRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTH 236 (384)
T ss_dssp HHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 87187854340016652436766544301526778876202322136787699734653222032999999999987646
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCH--HHHHHCCCEEEECCCCCCCCCCHHH
Q ss_conf 12488970552114788877653001011001344444664167506765202--5542208206613554445458376
Q gi|254780402|r 263 DVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMG--FYLRMTEIAFIGRSFCASGGQNPLE 340 (440)
Q Consensus 263 ~~~lIIvPRhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~--~lY~~AdiafVGGSl~~~GGhN~lE 340 (440)
....++.|.|+..... ...... + .....|.+++.+|-.. .+.+.|+ ++||.| ..| ..|
T Consensus 237 ~~~~ii~p~~~~~~~~--~~~~~~-~-----------~~~~ni~~~~~l~~~~~l~ll~~a~-~vIgnS--ssg---i~E 296 (384)
T 1vgv_A 237 QDIQIVYPVHLNPNVR--EPVNRI-L-----------GHVKNVILIDPQEYLPFVWLMNHAW-LILTDS--GGI---QEE 296 (384)
T ss_dssp TTEEEEEECCBCHHHH--HHHHHH-H-----------TTCTTEEEECCCCHHHHHHHHHHCS-EEEESS--STG---GGT
T ss_pred CCCEEEEECCCCCCCH--HHHHHH-H-----------CCCCCCEECCCCCHHHHHHHHHHCE-EEEECC--CCH---HHH
T ss_conf 6706985348985301--456777-5-----------1444431037855899999985156-999468--418---888
Q ss_pred HHHHCCCEEE-CCCCCCHHHHHHHHHHCCCEEEE-CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8961994999-89844379999999978986995-798999999999958989999999999999970455699999999
Q gi|254780402|r 341 AAMLGCAILS-GPNVENFRDIYRRMVSSGAVRIV-EEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSL 418 (440)
Q Consensus 341 paa~G~pVi~-GP~~~nf~e~~~~L~~~g~~~~v-~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~~i 418 (440)
|+++|+|+|. |..+. -++ . .+.|....| .|.+++.+++.++++++..+..+.+. .+.. -..+|++|+++.|
T Consensus 297 A~~lg~P~Inir~~te-r~~---~-~~~~~~i~v~~~~~~I~~ai~~~l~~~~~~~~~~~~-~npY-GdG~as~rIv~~L 369 (384)
T 1vgv_A 297 APSLGKPVLVMRDTTE-RPE---A-VTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRA-HNPY-GDGQACSRILEAL 369 (384)
T ss_dssp GGGGTCCEEEESSCCS-CHH---H-HHHTSEEEECSSHHHHHHHHHHHHHCHHHHHHHHSS-CCTT-CCSCHHHHHHHHH
T ss_pred HHHHCCCEEECCCCCC-CHH---H-HHCCEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCC-CCCC-CCCHHHHHHHHHH
T ss_conf 9872997897778766-711---4-436805986899999999999997097877541447-8989-8985999999999
Q ss_pred HHHH
Q ss_conf 9752
Q gi|254780402|r 419 DSYV 422 (440)
Q Consensus 419 ~~~l 422 (440)
++.-
T Consensus 370 k~~~ 373 (384)
T 1vgv_A 370 KNNR 373 (384)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 8388