HHsearch results for GI: 254780402 and protein with PDBid: 1vgv_A

>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.41  E-value=2.4e-10  Score=86.21  Aligned_cols=331  Identities=17%  Similarity=0.161  Sum_probs=185.7

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHCC-CC--EEEEECCCCCCHHHHCCC------CCCEEEEECCCCCCH--------HHH
Q ss_conf             9998178999999999999998619-98--999962776300121014------774168850557201--------344
Q gi|254780402|r   59 IWFHASSVGETMALIGLIPAIRSRH-VN--VLLTTMTATSAKVARKYL------GQYAIHQYAPLDIQP--------AVS  121 (440)
Q Consensus        59 IW~HaaSvGE~~~a~pli~~l~~~~-~~--iliT~~T~tg~~~~~~~~------~~~~~~~y~P~D~~~--------~~~  121 (440)
                      |-+=..+-.|+--..||+++|+++. .+  +++|- +  -++...+.+      ++.......+-|...        ...
T Consensus         3 i~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG-~--H~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~   79 (384)
T 1vgv_A            3 VLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTA-Q--HREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLK   79 (384)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHHHSTTCEEEEEECC-S--SGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-C--CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999734719999999999973899888999938-9--88999999986297877452468899999999999999999


Q ss_pred             HHHHHHCCEEEEEECCCCHHHHH--HHHHHCCCCEEEEEECCCCCCCCC-CHHHHHHHHHCCCCC-CEEEECCHHHHHHH
Q ss_conf             55744202035640476214678--887422455058641266542121-001111233102644-23664157788899
Q gi|254780402|r  122 RFLKYWKPDCMILSESDIWPLTV--FELSKQRIPQVLVNARMSRRSFKN-WKTVLSFSKKIFSQF-SLVIVQSERYFRRY  197 (440)
Q Consensus       122 ~fl~~~~P~~~i~~e~ElWPnli--~~~~~~~ip~~linarls~~S~~~-~~~~~~l~~~~~~~~-~~i~~qs~~~~~rl  197 (440)
                      +++...+||++++.. |-.=.+-  ..+...+||++-+-|-+  +|..- +...--..|.+..++ +..++.++.+++|+
T Consensus        80 ~~l~~~kpD~v~v~G-Dr~e~la~a~aa~~~~Ipi~HiegG~--~s~~~~~~~~de~~R~~i~klS~lhf~~~~~~~~rL  156 (384)
T 1vgv_A           80 PILAEFKPDVVLVHG-DTTTTLATSLAAFYQRIPVGHVEAGL--RTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNL  156 (384)
T ss_dssp             HHHHHHCCSEEEEET-TCHHHHHHHHHHHTTTCCEEEESCCC--CCSCTTSSTTHHHHHHHHHTTCSEEEESSHHHHHHH
T ss_pred             HHHHHCCCCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCHHHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf             999855999899968-98437669999997599789984144--567877788067653011321238874358999999


Q ss_pred             HHHCC--CCEEEECCCCCCCCCCCCCH----H-HHHHHHHH---CCCCCEEECCCCCCCCC-----CCCCCCCCCCCCCC
Q ss_conf             86088--50587204310123442212----5-68999986---17986175046553321-----00000000001234
Q gi|254780402|r  198 KELGA--QKLIVSGNLKIDTESLPCDK----E-LLSLYQES---IAGRYTWAAISTFEGEE-----DKAVYVHNFIKCRT  262 (440)
Q Consensus       198 ~~lG~--~~i~v~GnlK~d~~~~~~~~----~-~~~~~~~~---~~~r~v~vagSth~~EE-----~~il~a~~~l~~~~  262 (440)
                      .++|.  ++|.++|++-.|......+.    . ........   +....-++....|+.|.     +.++.+...+....
T Consensus       157 ~~~G~~~~~I~~vG~~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~t~h~~~~~~~~~~~i~~~l~~~~~~~  236 (384)
T 1vgv_A          157 LRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTH  236 (384)
T ss_dssp             HHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHC
T ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             87187854340016652436766544301526778876202322136787699734653222032999999999987646


Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCH--HHHHHCCCEEEECCCCCCCCCCHHH
Q ss_conf             12488970552114788877653001011001344444664167506765202--5542208206613554445458376
Q gi|254780402|r  263 DVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMG--FYLRMTEIAFIGRSFCASGGQNPLE  340 (440)
Q Consensus       263 ~~~lIIvPRhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~--~lY~~AdiafVGGSl~~~GGhN~lE  340 (440)
                      ....++.|.|+.....  ...... +           .....|.+++.+|-..  .+.+.|+ ++||.|  ..|   ..|
T Consensus       237 ~~~~ii~p~~~~~~~~--~~~~~~-~-----------~~~~ni~~~~~l~~~~~l~ll~~a~-~vIgnS--ssg---i~E  296 (384)
T 1vgv_A          237 QDIQIVYPVHLNPNVR--EPVNRI-L-----------GHVKNVILIDPQEYLPFVWLMNHAW-LILTDS--GGI---QEE  296 (384)
T ss_dssp             TTEEEEEECCBCHHHH--HHHHHH-H-----------TTCTTEEEECCCCHHHHHHHHHHCS-EEEESS--STG---GGT
T ss_pred             CCCEEEEECCCCCCCH--HHHHHH-H-----------CCCCCCEECCCCCHHHHHHHHHHCE-EEEECC--CCH---HHH
T ss_conf             6706985348985301--456777-5-----------1444431037855899999985156-999468--418---888


Q ss_pred             HHHHCCCEEE-CCCCCCHHHHHHHHHHCCCEEEE-CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             8961994999-89844379999999978986995-798999999999958989999999999999970455699999999
Q gi|254780402|r  341 AAMLGCAILS-GPNVENFRDIYRRMVSSGAVRIV-EEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSL  418 (440)
Q Consensus       341 paa~G~pVi~-GP~~~nf~e~~~~L~~~g~~~~v-~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~~i  418 (440)
                      |+++|+|+|. |..+. -++   . .+.|....| .|.+++.+++.++++++..+..+.+. .+.. -..+|++|+++.|
T Consensus       297 A~~lg~P~Inir~~te-r~~---~-~~~~~~i~v~~~~~~I~~ai~~~l~~~~~~~~~~~~-~npY-GdG~as~rIv~~L  369 (384)
T 1vgv_A          297 APSLGKPVLVMRDTTE-RPE---A-VTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRA-HNPY-GDGQACSRILEAL  369 (384)
T ss_dssp             GGGGTCCEEEESSCCS-CHH---H-HHHTSEEEECSSHHHHHHHHHHHHHCHHHHHHHHSS-CCTT-CCSCHHHHHHHHH
T ss_pred             HHHHCCCEEECCCCCC-CHH---H-HHCCEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCC-CCCC-CCCHHHHHHHHHH
T ss_conf             9872997897778766-711---4-436805986899999999999997097877541447-8989-8985999999999


Q ss_pred             HHHH
Q ss_conf             9752
Q gi|254780402|r  419 DSYV  422 (440)
Q Consensus       419 ~~~l  422 (440)
                      ++.-
T Consensus       370 k~~~  373 (384)
T 1vgv_A          370 KNNR  373 (384)
T ss_dssp             HHTC
T ss_pred             HHCC
T ss_conf             8388