RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780402|ref|YP_003064815.1|
3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter
asiaticus str. psy62]
(440 letters)
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 48.6 bits (115), Expect = 2e-06
Identities = 49/353 (13%), Positives = 99/353 (28%), Gaps = 34/353 (9%)
Query: 72 LIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQP------AVSRFLK 125
L I + V +T A A K L Y + ++ + P A++ ++
Sbjct: 25 LRDFIATQDPESIVVFASTQNAEEAHAYDKTLD-YEVIRWPRSVMLPTPTTAHAMAEIIR 83
Query: 126 YWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSL 185
+ D + + L + +V+ + + +KI ++ +
Sbjct: 84 EREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDV 143
Query: 186 VIVQSERYFRRYKELG--AQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAAIST 243
+ S+ RR+K + +D + +
Sbjct: 144 LTYISQYTLRRFKSAFGSHPTFEHLPS-GVDVKRFTPATP---------EDKSATRKKLG 193
Query: 244 FEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIA-KGLKVARRSRGDVINAE 302
F + + I + LI G + R ++
Sbjct: 194 FTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQ 253
Query: 303 VDIFLG--DTIGEMGFYLRMTEIAFIGRSFCASG-----GQNPLEAAMLGCAILSGPNVE 355
FLG + + A R+ G LEA G +++
Sbjct: 254 NVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIA-GTSG 312
Query: 356 NFRDIYRRMVSSGAVRIVEE--VGTLADMVYSLLSEPTIRYEMINAAINEVKK 406
+ V+ +VE V L++++ LL +P R M A V+
Sbjct: 313 GAPET----VTPATGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEA 361
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 46.1 bits (109), Expect = 2e-05
Identities = 57/280 (20%), Positives = 87/280 (31%), Gaps = 109/280 (38%)
Query: 54 PIG-PLI------WFHASSVGETMALIGLIPA-IRSR------HVNVLLT-TMTATS--- 95
PI PLI + V T L+G P +RS H L+T A +
Sbjct: 235 PISCPLIGVIQLAHY---VV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 96 ---AKVARK------YLGQYAIHQYAP-LDIQPAV---SRFLKYWKPDCMILSESDIWPL 142
RK ++G ++ P + P++ S P M LS S+
Sbjct: 290 ESFFVSVRKAITVLFFIG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPM-LSISN---- 343
Query: 143 TVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKELGA 202
L+++++ Q VN N + L K++ SLV GA
Sbjct: 344 ----LTQEQV-QDYVNK-------TN--SHLPAGKQVE--ISLVN-------------GA 374
Query: 203 QKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAAISTFEGEED---------KAVY 253
+ L+VSG P SLY G + D K +
Sbjct: 375 KNLVVSG--------PP-----QSLY-----GLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 254 VHNFIKCRTDVLTIIVPRH-PRRCDA---IERRLIAKGLK 289
+ F L + P H A I + L+ +
Sbjct: 417 SNRF-------LPVASPFHSHLLVPASDLINKDLVKNNVS 449
Score = 44.5 bits (105), Expect = 4e-05
Identities = 44/301 (14%), Positives = 87/301 (28%), Gaps = 100/301 (33%)
Query: 162 SRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCD 221
S R LS + + L++ F +L Q L TE D
Sbjct: 5 STRPL-----TLS-HGSL--EHVLLV--PTASFFIASQLQEQFN---KILPEPTEGFAAD 51
Query: 222 KELLSLYQESIAGRYTWAAISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIER 281
E + + G++ +S+ + VL + + E
Sbjct: 52 DEPTT--PAELVGKFL-GYVSSLVEPSKVGQF--------DQVLNLCL-------TEFEN 93
Query: 282 RLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFIGRSF---CASGGQNP 338
+ G+ I+A L + + + + +++ +
Sbjct: 94 CYL----------EGNDIHALAAKLLQENDTTL------VKTKELIKNYITARIMAKRPF 137
Query: 339 --------LEAAMLG----CAILSGP-NVENF----RDIYRRMVSSGAVRIVEE-VGTLA 380
A G AI G N +++ RD+Y+ +V + + A
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-TYHV----LVGDLIKFSA 192
Query: 381 DMVYSLLSEPTIRYEMINAAINEVKKM--QGPLKIT--LRSLDS-----Y-----VN-PL 425
+ + L+ + +K+ QG L I L + + Y ++ PL
Sbjct: 193 ETLSELIRTTL-----------DAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 426 I 426
I
Sbjct: 241 I 241
Score = 43.4 bits (102), Expect = 1e-04
Identities = 81/472 (17%), Positives = 141/472 (29%), Gaps = 173/472 (36%)
Query: 24 LSVSLSLYRVFNRERGRKFGERLGYPTALRPIGPLIWFHASSVGETMA-LIGLI-----P 77
L V + + + ++ + +F + L PT G ++ E + +G + P
Sbjct: 20 LLVPTASFFIASQLQ-EQFNKILPEPTE----GFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 78 AIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAVSRFLKYWKPDCMILSES 137
+ + VL +T YL IH A +L E+
Sbjct: 75 SKVGQFDQVLNLCLTE----FENCYLEGNDIHAL-------AAK-----------LLQEN 112
Query: 138 DIWPLTVFELSKQRIPQVLVNAR-MSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRR 196
D + + + + + AR M++R F + +F V +
Sbjct: 113 DTTL-----VKTKELIKNYITARIMAKRPFDKKS-----NSALFRA-----VGEGN-AQL 156
Query: 197 YKELGAQKLIVSGNLKIDTESLPCDKELLSLYQ----------ESIAGR----------- 235
G Q GN T+ +EL LYQ + A
Sbjct: 157 VAIFGGQ-----GN----TDD--YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 236 ---YT-------WAAISTFEGEEDKAVY----------------VHNFIKCRTDVLTIIV 269
+T W + DK Y H + + +L
Sbjct: 206 EKVFTQGLNILEW--LENPSNTPDKD-YLLSIPISCPLIGVIQLAHYVVTAK--LLGF-- 258
Query: 270 PRHPRRCDAIE-RRLIA------KGLKVARRSRGDVINAEVDIFLGDTIGEMGFY---LR 319
P E R + +GL A V AE D + ++ F+ +
Sbjct: 259 --TPG-----ELRSYLKGATGHSQGLVTA------VAIAETDSW--ES-----FFVSVRK 298
Query: 320 MTEIAF-IG-RSFCASGGQNPLEAAML------GCAILSGPNVENFRDIYRRMVS-SGAV 370
+ F IG R + A L ++L + S P M+S S
Sbjct: 299 AITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPS-P-----------MLSISNLT 345
Query: 371 RIVEEVGTLADMVYSLL-SEPTIRYEMINAAINEVKKMQGPLKITLRSLDSY 421
+ E+V + S L + + ++N A N V + GP + +L L+
Sbjct: 346 Q--EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQ-SLYGLNLT 392
Score = 31.5 bits (71), Expect = 0.45
Identities = 57/270 (21%), Positives = 94/270 (34%), Gaps = 99/270 (36%)
Query: 177 KKIFSQFSLVIVQSERYFRRYKELGAQKLIVSGNLKID-----------TESLPCDKELL 225
K+I +S +I ++ IV G LK + + + +K LL
Sbjct: 1682 KRIRENYSAMIFET---------------IVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 226 SLYQESIAGRYTWAAISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIA 285
S A ++T A++ E KA + D + LI
Sbjct: 1727 S------ATQFTQPALTLME----KAAFE----------------------DLKSKGLIP 1754
Query: 286 KGLKVARRSRGD--VINAEVDIFLGDTIGEMGFYLRMT-EIAF----IGRSFCASGGQNP 338
A S G+ + + D+ +++ E+ FY MT ++A +GRS
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS--------- 1805
Query: 339 LEAAMLGCAILSGPNVENFRDIYRRMVSSGAVR-IVEEVGTLADMVYSLLSEPTIRYEMI 397
M+ AI G +F S A++ +VE VG + E++
Sbjct: 1806 -NYGMI--AINPGRVAASF--------SQEALQYVVERVGKRTGWLV----------EIV 1844
Query: 398 NAAINEVKKMQGPLKITLRSLDSYVNPLIF 427
N V+ Q LR+LD+ N L F
Sbjct: 1845 NY---NVENQQYVAAGDLRALDTVTNVLNF 1871
Score = 29.9 bits (67), Expect = 1.2
Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 71/194 (36%)
Query: 73 IGLI----------PAIRSRHVNVLLTTMTATS----AKV---ARK------YLGQYAI- 108
I L+ P +N+ L A S +++ RK +L +
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL---PVA 424
Query: 109 ---H-QYAPLDIQPAVSRFLKYWKPDCMILSESD--IWPLTVF---------ELSKQRIP 153
H + PA K + + + D I P V+ LS
Sbjct: 425 SPFHSHL----LVPASDLINKDLVKNNVSFNAKDIQI-P--VYDTFDGSDLRVLSGSISE 477
Query: 154 QVLVNARMSRRSFKNWKTVLSFSKKIFSQF---------SLVIVQSERYFRRYKE-LGAQ 203
+ +V R W+T F F L R K+ G +
Sbjct: 478 R-IV--DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT--------HRNKDGTGVR 526
Query: 204 KLIVSGNLKIDTES 217
+IV+G L I+ +
Sbjct: 527 -VIVAGTLDINPDD 539
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 36.9 bits (84), Expect = 0.010
Identities = 39/304 (12%), Positives = 89/304 (29%), Gaps = 21/304 (6%)
Query: 120 VSRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKI 179
+S F+ KPD +++ +D + + L+ + KN + L +
Sbjct: 73 LSEFIDVHKPD-IVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENL-WWIFS 130
Query: 180 FSQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWA 239
+ V+ S+ + G + I + +DT+++ ++L+ L + + +
Sbjct: 131 HPKVVGVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIYDARKLVGLSEYNDDVLFLNM 190
Query: 240 A-ISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDV 298
+ + + + FI D + + + L +
Sbjct: 191 NRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFT 250
Query: 299 INAEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFR 358
++ I E + + S G E A+LG ++ V
Sbjct: 251 HLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII-SAVGGAD 309
Query: 359 DI----------------YRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAIN 402
D G + + +V L + + + R E +
Sbjct: 310 DYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQD 368
Query: 403 EVKK 406
VK
Sbjct: 369 FVKT 372
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.41
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 404 VKKMQGPLKITLRSLDSYVNPLI 426
+KK+Q LK L + DS P +
Sbjct: 22 LKKLQASLK--LYADDS--APAL 40
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET:
TYD; 2.50A {Micromonospora echinospora}
Length = 416
Score = 30.2 bits (67), Expect = 1.1
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 5/130 (3%)
Query: 268 IVPRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFIG 327
P R + V G V A + L + + + +
Sbjct: 257 TFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAALG-DLPPNVEAHRWVPHVKVLEQAT 315
Query: 328 RSFCASGGQNPLEAAMLGCAILSGPNVENFRDIYRRMVSSGAVRIVEE----VGTLADMV 383
G +EA G ++ P + + + RR+ G ++ TL V
Sbjct: 316 VCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAV 375
Query: 384 YSLLSEPTIR 393
++ ++P +
Sbjct: 376 GAVAADPALL 385
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 28.5 bits (63), Expect = 3.1
Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 113 PLDIQPAVSRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTV 172
D+ V + L+ K C I+S + LT ++++ + + R+ + + +
Sbjct: 335 DEDLNKKVEKILQTAKVGCKIISLKSLRSLT-YQINFYNVEN--IFNRLKVQRYDLKEDS 391
Query: 173 LSFSKKIFSQFSLVIVQS--ERYF 194
+S++ + +++ E F
Sbjct: 392 VSWTHSGGEYYISTVMEDVDESLF 415
>2wjn_L Reaction center protein L chain; bacteriochlorophyll,
lipidic-sponge phase, photosynthesis, electron
transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7
NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L*
2i5n_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L*
3g7f_L* 3prc_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Length = 274
Score = 28.5 bits (64), Expect = 3.5
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 18/96 (18%)
Query: 10 LGIYRW--GGIFFMP--FLSVSLSLYRVFNRERGRKFGERLGYPTA-------------L 52
LG GG + + + + E RK G P A
Sbjct: 76 LGAAPLLEGGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVF 135
Query: 53 RPIGPLIWFHASSVGETMALIGLIPAIRSRHVNVLL 88
RP+ W HA G ++ + + +++N
Sbjct: 136 RPLLLGSWGHAFPYG-ILSHLDWVNNFGYQYLNWHY 170
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase,
legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella
pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Length = 525
Score = 28.0 bits (62), Expect = 3.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 213 IDTESLPCDKELLSLYQESIA 233
ID +S+ D L L + +A
Sbjct: 197 IDIDSVKTDSPLYPLIKAELA 217
>3men_A Acetylpolyamine aminohydrolase; seattle structural genomics center
for infectious disease (ssgcid), histone deacetylase;
2.20A {Burkholderia pseudomallei 1710B}
Length = 362
Score = 28.1 bits (62), Expect = 4.5
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 270 PRHPRRCDAIERRLIAKGLKV 290
P R + A G V
Sbjct: 48 QEVPERAARLVAAAFAMGFPV 68
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, cytoplasm,
RNA-binding, RNA binding, mitochondrion, rRNA
processing; 3.00A {Saccharomyces cerevisiae}
Length = 977
Score = 27.4 bits (60), Expect = 6.0
Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)
Query: 108 IHQYAPLDIQPAVSRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFK 167
I +Y + ++ + ++P + + + + ++++ NA+ + R+
Sbjct: 822 IRRYCDVVAHRQLAGAIG-YEPLSLTHRDKNKMDMICRNINRKHR-----NAQFAGRASI 875
Query: 168 NWKTVLSFSKKIFSQFSLVI-VQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLS 226
+ ++ VI V + + G + LI NL D S D+
Sbjct: 876 EYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYK 935
Query: 227 LYQESIAGR 235
L
Sbjct: 936 LTFVPTNSD 944
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.139 0.414
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,747,719
Number of extensions: 174631
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 17
Length of query: 440
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 345
Effective length of database: 3,390,050
Effective search space: 1169567250
Effective search space used: 1169567250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)