BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780402|ref|YP_003064815.1|
3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter
asiaticus str. psy62]
         (440 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 440

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/440 (100%), Positives = 440/440 (100%)

Query: 1   MANVLDCILLGIYRWGGIFFMPFLSVSLSLYRVFNRERGRKFGERLGYPTALRPIGPLIW 60
           MANVLDCILLGIYRWGGIFFMPFLSVSLSLYRVFNRERGRKFGERLGYPTALRPIGPLIW
Sbjct: 1   MANVLDCILLGIYRWGGIFFMPFLSVSLSLYRVFNRERGRKFGERLGYPTALRPIGPLIW 60

Query: 61  FHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAV 120
           FHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAV
Sbjct: 61  FHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAV 120

Query: 121 SRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIF 180
           SRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIF
Sbjct: 121 SRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIF 180

Query: 181 SQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAA 240
           SQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAA
Sbjct: 181 SQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAA 240

Query: 241 ISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVIN 300
           ISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVIN
Sbjct: 241 ISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVIN 300

Query: 301 AEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDI 360
           AEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDI
Sbjct: 301 AEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDI 360

Query: 361 YRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDS 420
           YRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDS
Sbjct: 361 YRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDS 420

Query: 421 YVNPLIFQNHLLSKDPSFKQ 440
           YVNPLIFQNHLLSKDPSFKQ
Sbjct: 421 YVNPLIFQNHLLSKDPSFKQ 440


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 25.4 bits (54), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 309 DTIGEMGFYL--------RMTEIAFIG----RSFCASGGQNPLEAAMLGCAILSGPNVEN 356
           D++ +MG+ L        R+  +  IG    +   AS  Q  LE + L   + + P++  
Sbjct: 4   DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63

Query: 357 FRDIYRRMVSSGAVRIVEEVGTL 379
           + + +R  V  G  R+VE+V  L
Sbjct: 64  WNERFRLGVKGGRGRLVEDVELL 86


>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 520

 Score = 25.0 bits (53), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 365 VSSGAVRIVEEVGTLADMVYSLLSEP--TIRYE 395
           +S  A+RIV EV  +  +VY + S+P  TI +E
Sbjct: 488 LSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520


>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 23.5 bits (49), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 38  RGRKFGERLGYPTALRPIGPLI 59
            G K G  LG+PTA   + P I
Sbjct: 198 HGEKIGRTLGFPTANMQLSPDI 219


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.139    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,276
Number of Sequences: 1233
Number of extensions: 10612
Number of successful extensions: 36
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 8
length of query: 440
length of database: 328,796
effective HSP length: 77
effective length of query: 363
effective length of database: 233,855
effective search space: 84889365
effective search space used: 84889365
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)