BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter asiaticus str. psy62] (440 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/440 (100%), Positives = 440/440 (100%) Query: 1 MANVLDCILLGIYRWGGIFFMPFLSVSLSLYRVFNRERGRKFGERLGYPTALRPIGPLIW 60 MANVLDCILLGIYRWGGIFFMPFLSVSLSLYRVFNRERGRKFGERLGYPTALRPIGPLIW Sbjct: 1 MANVLDCILLGIYRWGGIFFMPFLSVSLSLYRVFNRERGRKFGERLGYPTALRPIGPLIW 60 Query: 61 FHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAV 120 FHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAV Sbjct: 61 FHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAV 120 Query: 121 SRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIF 180 SRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIF Sbjct: 121 SRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIF 180 Query: 181 SQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAA 240 SQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAA Sbjct: 181 SQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAA 240 Query: 241 ISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVIN 300 ISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVIN Sbjct: 241 ISTFEGEEDKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVIN 300 Query: 301 AEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDI 360 AEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDI Sbjct: 301 AEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDI 360 Query: 361 YRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDS 420 YRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDS Sbjct: 361 YRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDS 420 Query: 421 YVNPLIFQNHLLSKDPSFKQ 440 YVNPLIFQNHLLSKDPSFKQ Sbjct: 421 YVNPLIFQNHLLSKDPSFKQ 440 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Query: 309 DTIGEMGFYL--------RMTEIAFIG----RSFCASGGQNPLEAAMLGCAILSGPNVEN 356 D++ +MG+ L R+ + IG + AS Q LE + L + + P++ Sbjct: 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63 Query: 357 FRDIYRRMVSSGAVRIVEEVGTL 379 + + +R V G R+VE+V L Sbjct: 64 WNERFRLGVKGGRGRLVEDVELL 86 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Query: 365 VSSGAVRIVEEVGTLADMVYSLLSEP--TIRYE 395 +S A+RIV EV + +VY + S+P TI +E Sbjct: 488 LSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 >gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 324 Score = 23.5 bits (49), Expect = 7.7, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 38 RGRKFGERLGYPTALRPIGPLI 59 G K G LG+PTA + P I Sbjct: 198 HGEKIGRTLGFPTANMQLSPDI 219 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.139 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 264,276 Number of Sequences: 1233 Number of extensions: 10612 Number of successful extensions: 36 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 8 length of query: 440 length of database: 328,796 effective HSP length: 77 effective length of query: 363 effective length of database: 233,855 effective search space: 84889365 effective search space used: 84889365 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 40 (20.0 bits)