Query gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 80
No_of_seqs 100 out of 110
Neff 3.5
Searched_HMMs 33803
Date Wed Jun 1 12:33:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780403.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1x60_A Sporulation-specific N 75.0 2.6 7.6E-05 23.1 2.9 31 34-64 48-78 (79)
2 >1uta_A FTSN, MSGA, cell divis 67.9 3.1 9.3E-05 22.6 2.0 31 34-64 48-78 (81)
3 >2pm7_A Protein WEB1, protein 44.0 12 0.00036 19.3 1.7 30 5-38 14-43 (47)
4 >2pm9_A Protein WEB1, protein 38.7 13 0.00037 19.2 1.1 26 7-36 4-29 (35)
5 >2b5e_A Protein disulfide-isom 28.1 46 0.0014 15.9 2.6 37 23-59 11-47 (98)
6 >2r2j_A Thioredoxin domain-con 21.3 33 0.00098 16.8 0.8 42 20-61 6-48 (101)
7 >3e49_A Uncharacterized protei 17.0 61 0.0018 15.2 1.4 25 43-79 36-60 (311)
8 >3lot_A Uncharacterized protei 14.8 75 0.0022 14.7 1.4 25 43-79 36-60 (314)
9 >3ei4_B DNA damage-binding pro 14.2 84 0.0025 14.5 1.5 25 13-37 13-39 (54)
10 >3a4r_A Nfatc2-interacting pro 13.8 55 0.0016 15.5 0.5 30 8-37 46-79 (79)
No 1
>>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis} (A:)
Probab=74.97 E-value=2.6 Score=23.10 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=26.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCHHHCCCEE
Q ss_conf 0981488989999999999764873102126
Q gi|254780403|r 34 DVVGIFSSYSNAYDVWKEKSQQMVDNALMRY 64 (80)
Q Consensus 34 eivG~f~~Y~~A~~AWka~Aq~TVDnA~mRY 64 (80)
-++|||.|+++|..+=........+...+|+
T Consensus 48 V~vGpf~~~~~A~~~~~~lk~~g~~~~iv~~ 78 (79)
T 1x60_A 48 VQIGAFSSKDNADTLAARAKNAGFDAIVILE 78 (79)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9988869999999999999983997299980
No 2
>>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} (A:)
Probab=67.86 E-value=3.1 Score=22.61 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=25.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCHHHCCCEE
Q ss_conf 0981488989999999999764873102126
Q gi|254780403|r 34 DVVGIFSSYSNAYDVWKEKSQQMVDNALMRY 64 (80)
Q Consensus 34 eivG~f~~Y~~A~~AWka~Aq~TVDnA~mRY 64 (80)
-++|||.++++|.++=........+++-+++
T Consensus 48 V~iGp~~~~~~A~~~~~~lk~~~~~~~~i~~ 78 (81)
T 1uta_A 48 VVIGPVKGKENADSTLNRLKMAGHTNCIRLA 78 (81)
T ss_dssp EEESSCBTTTHHHHHHHHHHHHCCSCCBCCC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9987739999999999999987998779963
No 3
>>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A (A:1-47)
Probab=44.01 E-value=12 Score=19.26 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=20.9
Q ss_pred CCCCEEEEEEEEEEEECCCCCEECCCCCCEEEEC
Q ss_conf 7664259999602885488520016873209814
Q gi|254780403|r 5 IQEEQVLYLVFGGELENITQKKMRNPDDIDVVGI 38 (80)
Q Consensus 5 ~~~~Q~lhlV~GGel~d~~~~~f~d~~~~eivG~ 38 (80)
+.+.+-.+|+|||.|..++ .|+..+.|.-|
T Consensus 14 ~nkSpaA~WaFGGKlV~it----~DgkgV~i~kP 43 (47)
T 2pm7_A 14 GEPSPAAHWAFGGKLVQIT----PDGKGVSITNP 43 (47)
T ss_dssp CCCCCCCEEETTTEEEEEC----TTSSCEEEECC
T ss_pred CCCCCCEEECCCCEEEEEC----CCCCCEEEEEE
T ss_conf 5998814778898799985----89985588873
No 4
>>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} (A:382-416)
Probab=38.66 E-value=13 Score=19.17 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=17.6
Q ss_pred CCEEEEEEEEEEEECCCCCEECCCCCCEEE
Q ss_conf 642599996028854885200168732098
Q gi|254780403|r 7 EEQVLYLVFGGELENITQKKMRNPDDIDVV 36 (80)
Q Consensus 7 ~~Q~lhlV~GGel~d~~~~~f~d~~~~eiv 36 (80)
+.+-.+|+|||.|..++. |+..+.|.
T Consensus 4 kSpaA~WaFGGKlV~it~----DgkgV~i~ 29 (35)
T 2pm9_A 4 PSPAAHWAFGGKLVQITP----DGKGVSIT 29 (35)
T ss_dssp CSCCCEEETTTEEECBCT----TSSCBCCB
T ss_pred CCCCEEECCCCCEEEEEC----CCCEEEEE
T ss_conf 355078899996899976----89989960
No 5
>>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} (A:123-220)
Probab=28.11 E-value=46 Score=15.94 Aligned_cols=37 Identities=3% Similarity=-0.150 Sum_probs=32.4
Q ss_pred CCCEECCCCCCEEEECCCCHHHHHHHHHHHHHHCHHH
Q ss_conf 8520016873209814889899999999997648731
Q gi|254780403|r 23 TQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMVDN 59 (80)
Q Consensus 23 ~~~~f~d~~~~eivG~f~~Y~~A~~AWka~Aq~TVDn 59 (80)
+..+|+..+++-+||.|++-..+.....+.|..-+|+
T Consensus 11 ~~~~~~~~dkvvVV~~~~~d~~~netF~~vAe~lRdd 47 (98)
T 2b5e_A 11 AYLANETFVTPVIVQSGKIDADFNATFYSMANKHFND 47 (98)
T ss_dssp HHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 8874046750699994567626788999999973066
No 6
>>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, stress response; 2.60A {Homo sapiens} (A:119-219)
Probab=21.33 E-value=33 Score=16.77 Aligned_cols=42 Identities=12% Similarity=0.357 Sum_probs=28.9
Q ss_pred ECCCCCEECCCCCCEEEECCCCHHH-HHHHHHHHHHHCHHHCC
Q ss_conf 5488520016873209814889899-99999999764873102
Q gi|254780403|r 20 ENITQKKMRNPDDIDVVGIFSSYSN-AYDVWKEKSQQMVDNAL 61 (80)
Q Consensus 20 ~d~~~~~f~d~~~~eivG~f~~Y~~-A~~AWka~Aq~TVDnA~ 61 (80)
.+..-.+--+.+++-|||-|.+.++ .++..+..|..-.|++-
T Consensus 6 ~s~~el~~~~~~~~~VIGfF~~~d~~~~~~F~~~A~~lRdd~~ 48 (101)
T 2r2j_A 6 RDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCA 48 (101)
T ss_dssp ------------CCEEEEEESCSSSHHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 2056665430344214677468885799999999986036527
No 7
>>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} (A:)
Probab=17.01 E-value=61 Score=15.25 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHCHHHCCCEEEEEEHHHCCCCHHCC
Q ss_conf 9999999999764873102126766723218812048
Q gi|254780403|r 43 SNAYDVWKEKSQQMVDNALMRYFVVDISRFPHYELGK 79 (80)
Q Consensus 43 ~~A~~AWka~Aq~TVDnA~mRYfIvhlhrl~dp~~~k 79 (80)
++|..||++=| -|||+| -+||+.|+
T Consensus 36 ~~a~~c~~AGA-----------sivHlH-~Rd~~dG~ 60 (311)
T 3e49_A 36 QASIGAAEAGA-----------AVIHLH-ARDPRDGR 60 (311)
T ss_dssp HHHHHHHHHTC-----------SEEEEC-EECTTTCC
T ss_pred HHHHHHHHHCC-----------CEEEEE-ECCCCCCC
T ss_conf 99999998187-----------389977-35777799
No 8
>>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} (A:)
Probab=14.82 E-value=75 Score=14.74 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHCHHHCCCEEEEEEHHHCCCCHHCC
Q ss_conf 9999999999764873102126766723218812048
Q gi|254780403|r 43 SNAYDVWKEKSQQMVDNALMRYFVVDISRFPHYELGK 79 (80)
Q Consensus 43 ~~A~~AWka~Aq~TVDnA~mRYfIvhlhrl~dp~~~k 79 (80)
++|..||++=| -|+|+| -+||+.|+
T Consensus 36 ~~A~~c~~AGA-----------sivHlH-~Rdp~dG~ 60 (314)
T 3lot_A 36 EEAVKAAEAGA-----------GXVHIH-ARDPKDGR 60 (314)
T ss_dssp HHHHHHHHHTC-----------SEEEEC-EECTTTCC
T ss_pred HHHHHHHHHCC-----------CEEEEE-ECCCCCCC
T ss_conf 99999998256-----------389977-25777898
No 9
>>3ei4_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, alternative splicing, disease mutation, DNA repair; HET: DNA; 3.30A {Homo sapiens} (B:347-400)
Probab=14.17 E-value=84 Score=14.47 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.1
Q ss_pred EEEEEEEECCCCCEEC--CCCCCEEEE
Q ss_conf 9960288548852001--687320981
Q gi|254780403|r 13 LVFGGELENITQKKMR--NPDDIDVVG 37 (80)
Q Consensus 13 lV~GGel~d~~~~~f~--d~~~~eivG 37 (80)
|++=|.|-|+.|.-+. ++..+|++-
T Consensus 13 liVvGRYpd~~f~g~~~~elrtID~~D 39 (54)
T 3ei4_B 13 LIVVGRYPDPNFKSCTPYELRTIDVFD 39 (54)
T ss_dssp CEEEECCCCTTSCCSSSCCCSCEEEEC
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEEE
T ss_conf 999997668971799717999899998
No 10
>>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C (A:)
Probab=13.79 E-value=55 Score=15.51 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=19.3
Q ss_pred CEEEEEEEEEEEECC----CCCEECCCCCCEEEE
Q ss_conf 425999960288548----852001687320981
Q gi|254780403|r 8 EQVLYLVFGGELENI----TQKKMRNPDDIDVVG 37 (80)
Q Consensus 8 ~Q~lhlV~GGel~d~----~~~~f~d~~~~eivG 37 (80)
.+.+-|+|.|+--++ ....+.|++-+|+||
T Consensus 46 ~~~~~f~fdG~~l~~~~Tp~~l~ledgD~Idv~~ 79 (79)
T 3a4r_A 46 GHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEC
T ss_conf 5673999999884898997794997899998849
Done!