RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780403|ref|YP_003064816.1| hypothetical protein
CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
         (80 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 48/109 (44%)

Query: 6   QEEQV-LYLVFGG---------ELENI--TQKKM----------------RNPDDIDVVG 37
            E    L  +FGG         EL ++  T   +                R   D +   
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE--- 206

Query: 38  IFSSYSNAYDV--WKEKSQQMVDNALMRYFV-VDISRFP--------HY 75
               ++   ++  W E      D     Y + + IS  P        HY
Sbjct: 207 --KVFTQGLNILEWLENPSNTPDKD---YLLSIPIS-CPLIGVIQLAHY 249



 Score = 24.9 bits (54), Expect = 4.2
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 21/74 (28%)

Query: 6   QEEQVLYLVFGGELENITQKKMRNPDDI-DVVG---------------IFSSYSNAYDVW 49
           Q +QVL L     L       +   +DI  +                 +  +Y  A  + 
Sbjct: 79  QFDQVLNLC----LTEFENCYLEG-NDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133

Query: 50  KEKSQQMVDNALMR 63
           K    +  ++AL R
Sbjct: 134 KRPFDKKSNSALFR 147


>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine,
          virion, membrane, flavivirus, N7-methyltransferase,
          2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus}
          PDB: 2wa1_A*
          Length = 276

 Score = 26.2 bits (57), Expect = 1.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 37 GIFSSYSNAYDVWKEKSQQMVDNALMRY---FVVDISR 71
          GI SS     ++WK K  Q+     M Y   FVV++ R
Sbjct: 9  GICSSAPTLGEIWKRKLNQLDAKEFMAYRRRFVVEVDR 46


>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein;
           2.60A {Homo sapiens} PDB: 3e73_A*
          Length = 411

 Score = 25.1 bits (54), Expect = 3.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 60  ALMRYFVVDISRFPHYEL 77
            L    V   +RFP +EL
Sbjct: 394 FLADLLVPTKARFPAFEL 411


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
           termination, ATP-binding, cytoplasm, hydrolase,
           membrane; 2.80A {Schizosaccharomyces pombe}
          Length = 508

 Score = 23.9 bits (51), Expect = 9.6
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 8/43 (18%)

Query: 36  VGIFSSYSNAYDVWKEKSQQMVDNALMRYFVVDISRFP--HYE 76
           VG+  ++ +    W+E       NA+  YF   I+R P   YE
Sbjct: 460 VGVSINFVHDKKSWEEM------NAIQEYFQRPITRVPTDDYE 496


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 734,724
Number of extensions: 28115
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 9
Length of query: 80
Length of database: 5,693,230
Length adjustment: 49
Effective length of query: 31
Effective length of database: 4,505,274
Effective search space: 139663494
Effective search space used: 139663494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)