RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780403|ref|YP_003064816.1| hypothetical protein
CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
         (80 letters)



>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring
          nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
          Length = 327

 Score = 25.1 bits (54), Expect = 1.8
 Identities = 2/19 (10%), Positives = 10/19 (52%)

Query: 28 RNPDDIDVVGIFSSYSNAY 46
           N + + ++G   + ++ +
Sbjct: 24 SNTEKVRLIGALCTDADCF 42


>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
           2 (HRV-2) [TaxId: 12130]}
          Length = 269

 Score = 23.6 bits (51), Expect = 4.7
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 33  IDVVGIFSSYSNAYDVWKEKSQQ 55
           +  + + S+Y   YD + E+ Q 
Sbjct: 168 LPFLSVASAYYMFYDGYDEQDQN 190


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 317,022
Number of extensions: 12374
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 6
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)