HHsearch alignment of GI: 254780404 and MMDB domain: 1vdw_A_
>1vdw_A (A:) Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii}
Probab=100.00 E-value=0 Score=363.78 Aligned_cols=249 Identities=18% Similarity=0.219 Sum_probs=216.0
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
Q ss_conf 11008899999999999999999718842--0477258888204899999999999998415631454224556332466
Q gi|254780404|r 29 YEWKQDLDIVRSAVQGASTVAMQYFLRSP--NVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDLQRLN 106 (286)
Q Consensus 29 ~~~~~~l~~a~~aa~~Ag~~~~~~f~~~~--~~~~k~~~~~~VT~aD~~~e~~i~~~L~~~~P~~~iigEE~~~~~~~~~ 106 (286)
++++++++++++++++|++++++.|++.. ....+++++|+||++|+++|++|.+.|++.+|++. +||.+ ....+
T Consensus 1 m~~~~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~k~~~d~vT~~D~~~e~~i~~~L~~~~~~~~--~e~~~--~~~~~ 76 (254)
T 1vdw_A 1 MSVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGVNVV--SEEIG--RIDQG 76 (254)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTGGGTTCGGGGCEEEC-----CEEHHHHHHHHHHHHHHHHTTCEEE--ETTTE--EECCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE--CCCCC--CCCCC
T ss_conf 986999999999999999999998578433645520699882309999999999997775598720--15554--55689
Q ss_pred CEEEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 30356763213402221002210235554301221021100022333221222331001788633345787650799984
Q gi|254780404|r 107 YETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMAS 186 (286)
Q Consensus 107 ~~~~WiIDPIDGT~nF~~g~p~f~vsIal~~~g~pv~gvi~~P~~~~~~~a~~g~ga~~n~~~i~~~~~~~~~~~~~~~~ 186 (286)
++++|+|||||||+||++|.|.|||+|||+++|+|++|+||+|..+++|+|.+|+|++.|+++++++....+....+...
T Consensus 77 ~~~~wviDPIDGT~nf~~g~p~~~vsial~~~g~pv~gvv~~P~~~~~~~a~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 156 (254)
T 1vdw_A 77 SDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTK 156 (254)
T ss_dssp CSEEEEEEEEECHHHHHTTCSCCEEEEEEEETTEEEEEEEEEGGGTEEEEEETTTEEEETTEEECCCCCCSSCEEEEECS
T ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 97428986313404553324554010013333436750100111221102026876645897653211234321222210
Q ss_pred CCCCCCHHHHHHHCCEEEECHHHHHHHHHHCCCCCEEEECC-CCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCC-
Q ss_conf 46643101236543701305255788986212236998527-9998782167999986890999589984116775555-
Q gi|254780404|r 187 DVSLKGLDSYVRFRRQSSISSLCLRILMIASGEVDVLIVDR-NANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVN- 264 (286)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~gs~~~~~~~vA~G~~d~~~~~~-~~~~WD~aAg~~i~~eAGG~vtdl~G~~~~~~~~~~~- 264 (286)
.... ........+++.||+++++|+||.|++|+|+..+ .+++||+|||.+|++||||.++|++|+|+.|+.....
T Consensus 157 ~~~~---~~~~~~~~~r~~gs~~~~~~~va~G~~d~~v~~~~~~~~wD~aA~~~i~~eaGg~v~~~~G~~~~~~~~~~~~ 233 (254)
T 1vdw_A 157 GKGT---KIIDKVKRTRTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEK 233 (254)
T ss_dssp SCCH---HHHHTCSEEEBCSCHHHHHHHHHHTSCSEEEEEEEEECHHHHHHHHHHHHHTTCEEECTTSSBCCCCSCSSCC
T ss_pred CHHH---HHHHHHHHEEECCCHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC
T ss_conf 0034---6777775264316079762103332111454136778877777899999977998978999853268886667
Q ss_pred CCEEEECCHHHHHHHHHHHH
Q ss_conf 88899874897999999751
Q gi|254780404|r 265 HEVLFASAKWHFPSFKQHLS 284 (286)
Q Consensus 265 ~~~l~a~~~~~~~~l~~~~~ 284 (286)
.+.++++++..++.|.+.|.
T Consensus 234 ~~~i~a~~~~~~~~l~~~l~ 253 (254)
T 1vdw_A 234 VNIIAANNEELLETILRSIE 253 (254)
T ss_dssp EEEEEESCHHHHHHHHHTCC
T ss_pred CCEEEECCHHHHHHHHHHHC
T ss_conf 88899999999999999856