RPSBLAST alignment of GI: 254780404 and protein with PDBid: 1vdw
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1 Length = 254
Score = 58.9 bits (141), Expect = 1e-09
Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 10/244 (4%)
Query: 32 KQDLDIVRSAVQGASTVAMQYF--LRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRP 89
K I ++ M F ++ D + + S + L
Sbjct: 4 KTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGV 63
Query: 90 AYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHAS 149
+SEE Q + VVDP+DG+ FI G + +SVA+ H P+ ++
Sbjct: 64 --NVVSEEIGRIDQ--GSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEP 119
Query: 150 ALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSISSLC 209
+ + + G S NG+ I V S++ K +D R R + ++
Sbjct: 120 IVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRT---LGAIA 176
Query: 210 LRILMIASGEVDVLIVDRNA-NDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNHEVL 268
L + +A G +D ++ RN D+AA ++ +G + D+D K + S +
Sbjct: 177 LELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEKVNI 236
Query: 269 FASA 272
A+
Sbjct: 237 IAAN 240