RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780404|ref|YP_003064817.1| inositol monophosphatase
family protein [Candidatus Liberibacter asiaticus str. psy62]
(286 letters)
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
Length = 267
Score = 125 bits (315), Expect = 1e-29
Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 17/252 (6%)
Query: 35 LDIVRSAVQGASTVAMQYFLRSPNVWWKHEG-SSPVCDADIAVNDYLESFLRPLRPAYGW 93
++++ A A ++ + N+ +G + V AD + + L RP +G+
Sbjct: 11 MNVMVQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGF 70
Query: 94 LSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGK 153
L EE+++ + + + F+VDP+DGT F+ G + +S+A+ G+ V GV++ +
Sbjct: 71 LMEESEEIIGE-DSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDE 129
Query: 154 EFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSL----------KGLDSYVRFRRQS 203
F G + N + VS+ + + I L + +
Sbjct: 130 LFTAERGSGAFFNDRRCRVSARRRLEDCVIATGMPHLGRPGHGTYLIELRNVMAEVSGIR 189
Query: 204 SISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQV 263
+ L + +A+G D D WD+AA L++ +GG + D + +
Sbjct: 190 RFGTAALDLAYVAAGRTDGFWEDNL-QIWDMAAGILMVREAGGFVTDKEGGNDIFR---- 244
Query: 264 NHEVLFASAKWH 275
++ +
Sbjct: 245 KKNIIAGNEHIR 256
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Length = 308
Score = 115 bits (289), Expect = 8e-27
Identities = 41/280 (14%), Positives = 89/280 (31%), Gaps = 39/280 (13%)
Query: 35 LDIVRSAVQGASTVAMQYFLR-SPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGW 93
+ S Q A T+ + K + AD V + S L P
Sbjct: 12 VASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTI 71
Query: 94 LSEETDDDLQ-------------------------RLNYETLFVVDPIDGTRAFIEGRNE 128
+ EE + + + VDP+DGT+ + EG +
Sbjct: 72 IGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLD 131
Query: 129 -WCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTCNGKNISVS---------SNQMS 178
+ + + + G+ + G+++ + + T G + + +
Sbjct: 132 NVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHI 191
Query: 179 DSLAIMASDVSLKGLDSYVRFRRQSSISSLCLRILMIASGEVDVLI-VDRNANDWDLAAA 237
+ S+ + + + + +I+ + G+ + WD A
Sbjct: 192 ITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAP 251
Query: 238 DLLLECSGGALVDIDRKLLTYNR--SQVNHEVLFASAKWH 275
+++L GG L DI L Y++ +N + A+ + +
Sbjct: 252 EVILHAVGGKLTDIHGNPLQYDKEVKHMNSAGVLAALRNY 291
>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P,
hydrolase; HET: IPD; 2.30A {Methanocaldococcus
jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
Length = 252
Score = 109 bits (273), Expect = 7e-25
Identities = 41/246 (16%), Positives = 86/246 (34%), Gaps = 10/246 (4%)
Query: 30 EWKQDLDIVRSAVQGASTVAMQYFLRSPN--VWWKHEGSSPVCDADIAVNDYLESFLRPL 87
+W +I ++ + + YF R V D D +L+
Sbjct: 2 KW---DEIGKNIAKEIEKEILPYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYLK-- 56
Query: 88 RPAYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVH 147
+SEE + E V+DPIDG+ FI G + V + P G+ +
Sbjct: 57 SLNVNIVSEELGVI--DNSSEWTVVIDPIDGSFNFINGIPFFAFCFGVFKNNEPYYGLTY 114
Query: 148 ASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSISS 207
+ G + NG+ I V ++ + + + +R +
Sbjct: 115 EFLTKSFYEAYKGKGAYLNGRKIKVKDFNPNNIVISYYPSKKIDLEKLRNKVKRVRIFGA 174
Query: 208 LCLRILMIASGEVDVLIVDR-NANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNHE 266
L + +A G +D + R D+A++ ++ + +G + D + L ++ + +
Sbjct: 175 FGLEMCYVAKGTLDAVFDVRPKVRAVDIASSYIICKEAGALITDENGDELKFDLNATDRL 234
Query: 267 VLFASA 272
+ +
Sbjct: 235 NIIVAN 240
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 107 bits (268), Expect = 3e-24
Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 21/249 (8%)
Query: 32 KQDLDIVRSAVQ--GASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRP 89
+ L I R + +M R +V +G+ P AD D LR +
Sbjct: 4 RDALRISREIAGEVRKAIASMPLRERVKDVGMGKDGT-PTKAADRVAEDAALEILR--KE 60
Query: 90 AYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVH---HGRPVIGVV 146
++EE+ + +DP+DGT G + +S+ + G V
Sbjct: 61 RVTVVTEESGV---LGEGDVFVALDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFGYV 117
Query: 147 HASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSIS 206
+ A G E++ + NG+ I VS + AI+ D F+R
Sbjct: 118 YNLATGDEYYA-DSSGAYRNGERIEVSDAEELYCNAIIYYP------DRKFPFKRMRIFG 170
Query: 207 SLCLRILMIASGEVDVLI---VDRNANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQV 263
S + A G D + + +D AA + E +GG + ++D + L + +
Sbjct: 171 SAATELCFFADGSFDCFLDIRPGKMLRIYDAAAGVFIAEKAGGKVTELDGESLGNKKFDM 230
Query: 264 NHEVLFASA 272
+ +A
Sbjct: 231 QERLNIVAA 239
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 88.1 bits (217), Expect = 2e-18
Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 45/203 (22%)
Query: 111 FVVDPIDGTRAFIEGRNEWC----------------ISVAVVHHGRPVIGVVHASALGKE 154
VDPID T +I+G + I V + G P++GV++ + ++
Sbjct: 150 IWVDPIDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQD 209
Query: 155 FFVSV----------GMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSS 204
+ + + VS+ S++ + + S +G + S
Sbjct: 210 LHTRRWKGQCYWGLSYLGTNIHSLLPPVSTRSNSEAQSQGTQNPSSEGSCRFSVVISTSE 269
Query: 205 ------------------ISSLCLRILMIASGEVDVLI-VDRNANDWDLAAADLLLECSG 245
+ + L + G D+ I + WD AA +L G
Sbjct: 270 KETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCAAHAILRAMG 329
Query: 246 GALVDIDRKLLTYNRSQVNHEVL 268
G +VD+ L + ++ L
Sbjct: 330 GGMVDLKECLERNPDTGLDLPQL 352
Score = 35.0 bits (79), Expect = 0.021
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 36 DIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGW-- 93
+I R+ Q + + + K AD+ V + ++ + P G
Sbjct: 17 NIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKENMENKFPGLGKKI 76
Query: 94 LSEETDDDLQRLNYETLFVVDPIDGTRAFIEGR 126
EE+++ L + + + P + + +
Sbjct: 77 FGEESNELTNDLGEKIIMRLGPTEEETVALLSK 109
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 87.7 bits (216), Expect = 3e-18
Identities = 50/275 (18%), Positives = 102/275 (37%), Gaps = 37/275 (13%)
Query: 31 WKQDLDIVRSAVQGASTVAMQYFLRSPN---VWWKHEGSSPVCDADIAVNDYLESFLRPL 87
++ + A A + + + + K + S P+ AD ++ + + L
Sbjct: 20 FQSNAMAAIDAALKAGEKILSIYEDPKSDFEIERKADNS-PLTIADRKAHEAIVAILNET 78
Query: 88 RPAYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVH 147
+ D R ++TL++VDP+DGT+ FI+ E+ +++A+V + PV+GV++
Sbjct: 79 PFPVLSEEGKHMDYAVRRGWDTLWIVDPLDGTKEFIKRNGEFTVNIALVQNAVPVMGVIY 138
Query: 148 ASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVS------------------ 189
+ +F G + + + ++ I S+
Sbjct: 139 VPVKKELYFAVEGTGAYKCSGIVGLEDEGVTLQQMIEKSERMPLADARDHFIAVASRSHL 198
Query: 190 ----------LKGLDSYVRFRRQSSISSLCLRILMIASGEVDVLIVDRNANDWDLAAADL 239
LK V S ++I ++A G+ DV +WD AA
Sbjct: 199 TPETETYIADLKKKHGNVELISSGS----SIKICLVAEGKADVYPRFAPTMEWDTAAGHA 254
Query: 240 LLECSGGALVDIDR-KLLTYNRSQVNHEVLFASAK 273
+ +G + + + L YN+ + + AK
Sbjct: 255 IARAAGMEVYQAGKEEPLRYNKEDLLNPWFIVEAK 289
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 87.4 bits (215), Expect = 3e-18
Identities = 49/270 (18%), Positives = 107/270 (39%), Gaps = 19/270 (7%)
Query: 31 WKQDLDIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPA 90
W++ +D + A V + N+ K + V D V L + ++ P+
Sbjct: 5 WQECMDYAVTLAGQAGEVVREALKNEMNIMVKSSPADLVTATDQKVEKMLITSIKEKYPS 64
Query: 91 YGWLSEETDDDL--QRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHA 148
+ ++ EE+ L +++DPIDGT F+ G +S+ V + + G+V++
Sbjct: 65 HSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYS 124
Query: 149 SALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSY------------ 196
K + G + CNG+ + VS + ++ S + ++
Sbjct: 125 CLEDKMYTGRKGKGAFCNGQKLQVSHQEDITKSLLVTELGSSRTPETVRIILSNIERLLC 184
Query: 197 VRFRRQSSISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLL 256
+ + + L + ++A+G D + + WD+A A +++ +GG L+D+
Sbjct: 185 LPIHGIRGVGTAALNMCLVAAGAADA-YYEMGIHCWDVAGAGIIVTEAGGVLLDVTGGPF 243
Query: 257 TYNRSQVNHEVLFASAKWHFPSFKQHLSTL 286
+ V+ +S K + + +
Sbjct: 244 DLM----SRRVIASSNKTLAERIAKEIQII 269
>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol,
hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae}
SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
Length = 357
Score = 86.7 bits (213), Expect = 5e-18
Identities = 46/335 (13%), Positives = 99/335 (29%), Gaps = 96/335 (28%)
Query: 32 KQDLDIVRSAVQGASTVAMQYFL-----RSPNVWWKHEGSSPVCDADIAVNDYLESFLRP 86
+++L + AV+ AS + + + K++ S PV D A + + ++
Sbjct: 4 ERELLVATQAVRKASLLTKRIQSEVISHKDSTTITKNDNS-PVTTGDYAAQTIIINAIKS 62
Query: 87 LRPAYGWLSEETDDDLQRLNYETL------------------------------------ 110
P + EE+ L +
Sbjct: 63 NFPDDKVVGEESSSGLSDAFVSGILNEIKANDEVYNKNYKKDDFLFTNDQFPLKSLEDVR 122
Query: 111 ----------------FVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKE 154
+ +DPIDGT+ F+ G + + +A++ G +G + L
Sbjct: 123 QIIDFGNYEGGRKGRFWCLDPIDGTKGFLRGEQ-FAVCLALIVDGVVQLGCIGCPNLVLS 181
Query: 155 FFVSVGMKSTCN-----------------------GKNISVSSNQMSDSLAIMASDVSLK 191
+ + +K + I V + + + +
Sbjct: 182 SYGAQDLKGHESFGYIFRAVRGLGAFYSPSSDAESWTKIHVRHLKDTKDMITLEGVEKGH 241
Query: 192 GLDSYVRFRRQSSISSLCLRI------LMIASGEVDVLI-----VDRNANDWDLAAADLL 240
+ S L + ++A G DV + + WD AA +++
Sbjct: 242 SSHDEQTAIKNKLNISKSLHLDSQAKYCLLALGLADVYLRLPIKLSYQEKIWDHAAGNVI 301
Query: 241 LECSGGALVD-IDRKLLTYNRSQV--NHEVLFASA 272
+ +GG D ++ L + + V+ +S
Sbjct: 302 VHEAGGIHTDAMEDVPLDFGNGRTLATKGVIASSG 336
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 80.9 bits (198), Expect = 3e-16
Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 19/270 (7%)
Query: 31 WKQDLDIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPA 90
W++ A + + V K + V + D V D + S LR P+
Sbjct: 1 WEECFQAAVQLALRAGQIIRKALTEEKRVSTKTSAADLVTETDHLVEDLIISELRERFPS 60
Query: 91 YGWLSEETDDDLQ--RLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHA 148
+ +++EE L + +++DPIDGT F+ +S+ GV++
Sbjct: 61 HRFIAEEAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYH 120
Query: 149 SALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDS------------Y 196
+ + G + CNG+ + VS ++ + + +
Sbjct: 121 CTEERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLH 180
Query: 197 VRFRRQSSISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLL 256
+ I S L + +ASG D + WDLAAA +++ +GG ++D L
Sbjct: 181 AKAHGVRVIGSSTLALCHLASGAADA-YYQFGLHCWDLAAATVIIREAGGIVIDTSGGPL 239
Query: 257 TYNRSQVNHEVLFASAKWHFPSFKQHLSTL 286
V+ AS + Q L T+
Sbjct: 240 DLM----ACRVVAASTREMAMLIAQALQTI 265
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima MSB8} PDB: 2p3v_A*
Length = 256
Score = 79.6 bits (195), Expect = 6e-16
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 13/246 (5%)
Query: 34 DLDIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGW 93
LD ++ + M ++ R NV K V + D + +R P
Sbjct: 3 RLDFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENI 62
Query: 94 LSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGK 153
++EE + + L+++DPIDGT F+ G + IS+A V +G +GVVHA AL +
Sbjct: 63 MAEEGIFE----KGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNE 118
Query: 154 EFFVSVGMKSTCNGKNISV----SSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSISSLC 209
+ G + NG+ I V S + S R RR + S
Sbjct: 119 TLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAA 178
Query: 210 LRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNHEVLF 269
L + +G VD V N WD+AA ++++ +GG + D K + +F
Sbjct: 179 LNAAYVGAGRVDF-FVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAF----SKNFIF 233
Query: 270 ASAKWH 275
++ H
Sbjct: 234 SNGLIH 239
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 77.7 bits (190), Expect = 3e-15
Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 17/252 (6%)
Query: 35 LDIVRSAVQGASTVAMQYFLRSPNVWWKHEGS-SPVCDADIAVNDYLESFLRPLRPAYGW 93
L+I A + A + + + V +GS V + D A + +R P +
Sbjct: 5 LNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTI 64
Query: 94 LSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGK 153
+ E +L+ + + +V+DP+DGT FI+ + +S+AV GR + VV+ +
Sbjct: 65 I-TEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNE 123
Query: 154 EFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQS---------- 203
F + G + NG + S+ + D + +
Sbjct: 124 LFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYATTYINIVGKLFNECADFR 183
Query: 204 SISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQV 263
+ S L + +A+G VD + WD AA +LL+ +GG + D
Sbjct: 184 ATGSAALDLAYVAAGRVDG-FFEIGLRPWDFAAGELLVREAGGIVSDFTGGHNYML---- 238
Query: 264 NHEVLFASAKWH 275
++ + +
Sbjct: 239 TGNIVAGNPRVV 250
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.60A {Aquifex aeolicus VF5}
Length = 264
Score = 75.8 bits (185), Expect = 1e-14
Identities = 46/239 (19%), Positives = 94/239 (39%), Gaps = 14/239 (5%)
Query: 28 MYEWKQDLDIVRSAVQGASTVAMQYFLRSPNVWWKHEG-SSPVCDADIAVNDYLESFLRP 86
M K+ L++ + A V + F + + +G V D + ++ +
Sbjct: 1 MENLKKYLEVAKIAALAGGQVLKENFGKVKKENIEEKGEKDFVSYVDKTSEERIKEVILK 60
Query: 87 LRPAYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVV 146
P + + EE + Y + +DP+DGT+ +I G + +SV +V P++G V
Sbjct: 61 FFPDHEVVGEEMGAEGSGSEYR--WFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIVGAV 118
Query: 147 HASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDS----------Y 196
+ K ++ + G+ + NGK I V N+ ++ S D +
Sbjct: 119 YLPYFDKLYWGAKGLGAYVNGKRIKVKDNESLKHAGVVYGFPSRSRRDISIYLNIFKDVF 178
Query: 197 VRFRRQSSISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKL 255
+ + + M+A G D ++ + WD+ A ++L+ +GG +
Sbjct: 179 YEVGSMRRPGAAAVDLCMVAEGIFDGMM-EFEMKPWDITAGLVILKEAGGVYTLVGEPF 236
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
hydrolase; 2.60A {Mycobacterium tuberculosis H37RV}
Length = 299
Score = 67.4 bits (163), Expect = 3e-12
Identities = 48/258 (18%), Positives = 83/258 (32%), Gaps = 27/258 (10%)
Query: 30 EWKQDLDIVRSAVQGASTVAMQYFLRSPNVWWKHEG----------SSPVCDADIAVNDY 79
E + + + A+ + +G + PV D
Sbjct: 7 EPARLRSVAENLAAEAAAFVRGRRAEVFGISRAGDGDGAVRAKSSPTDPVTVVDTDTERL 66
Query: 80 LESFLRPLRPAYGWLSEET---DDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVV 136
L L LRP L EE D + +V+DPIDGT F+ G + +S+
Sbjct: 67 LRDRLAQLRPGDPILGEEGGGPADVTATPSDRVTWVLDPIDGTVNFVYGIPAYAVSIGAQ 126
Query: 137 HHGRPVIGVVHASALGKEFFVSVGMKSTCNG------------KNISVSSNQMSDSLAIM 184
G V G V A + + G+ + +S++ ++
Sbjct: 127 VGGITVAGAVADVAARTVYSAATGLGAHLTDERGRHVLRCTGVDELSMALLGTGFGYSVR 186
Query: 185 ASDVSLKGLDSYV-RFRRQSSISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLEC 243
+ + L V R I S L + M+A+G +D + WD AA L+
Sbjct: 187 CREKQAELLAHVVPLVRDVRRIGSAALDLCMVAAGRLDAYY-EHGVQVWDCAAGALIAAE 245
Query: 244 SGGALVDIDRKLLTYNRS 261
+G ++ +
Sbjct: 246 AGARVLLSTPRAGGAGLV 263
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; 1.30A {Pyrococcus
horikoshii} SCOP: e.7.1.1
Length = 254
Score = 58.9 bits (141), Expect = 1e-09
Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 10/244 (4%)
Query: 32 KQDLDIVRSAVQGASTVAMQYF--LRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRP 89
K I ++ M F ++ D + + S + L
Sbjct: 4 KTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGV 63
Query: 90 AYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHAS 149
+SEE Q + VVDP+DG+ FI G + +SVA+ H P+ ++
Sbjct: 64 --NVVSEEIGRIDQ--GSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEP 119
Query: 150 ALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSISSLC 209
+ + + G S NG+ I V S++ K +D R R + ++
Sbjct: 120 IVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRT---LGAIA 176
Query: 210 LRILMIASGEVDVLIVDRNA-NDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNHEVL 268
L + +A G +D ++ RN D+AA ++ +G + D+D K + S +
Sbjct: 177 LELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEKVNI 236
Query: 269 FASA 272
A+
Sbjct: 237 IAAN 240
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory
for structural genomics hyperthermophIle, PSI; 2.80A
{Pyrococcus furiosus} SCOP: e.7.1.1
Length = 262
Score = 52.0 bits (123), Expect = 2e-07
Identities = 43/247 (17%), Positives = 84/247 (34%), Gaps = 10/247 (4%)
Query: 28 MYEWKQDLDIVRSAVQGASTVAMQYF--LRSPNVWWKHEGSSPVCDADIAVNDYLESFLR 85
+ W+ ++ + T M +F + D D + S +
Sbjct: 11 LKFWR---EVAIDIISDFETTIMPFFGNPDGGKLVKISPSGDETKLVDKLAEDLILSRIT 67
Query: 86 PLRPAYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGV 145
+SEE Y +VDP+DG+ FI G + +S+AV +P+ +
Sbjct: 68 --ELGVNVVSEEVGVIDNESEYT--VIVDPLDGSYNFIAGIPFFALSLAVFKKDKPIYAI 123
Query: 146 VHASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSI 205
++ + F G + NGK I V S + +V+ R
Sbjct: 124 IYEPMTERFFEGIPGEGAFLNGKRIKVRKTPDEKPSISFYSRGKGHEIVKHVKRTRTLGA 183
Query: 206 SSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNH 265
+L + V+ V + D+AA ++ + +G + D K + + + +
Sbjct: 184 IALE-LAYLAMGALDGVVDVRKYVRPTDIAAGTIIAKEAGALIKDSAGKDIDISFNATDR 242
Query: 266 EVLFASA 272
+ A
Sbjct: 243 LDVIAVN 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.0 bits (101), Expect = 7e-05
Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 73/220 (33%)
Query: 33 QDLDIVRSAVQGASTVAMQYFLRSPNVWWKH--EGSSPVCDADIAV-------NDYLESF 83
+ +++++ + + +S + ++ EG++ + +A+ +DY E
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL----VAIFGGQGNTDDYFEE- 172
Query: 84 LRPLRPAYGWLSEE----TDDDLQRLNYETLFVVDPIDGTRAFIEGRN--EW-------- 129
LR L Y L + + + L L + +D + F +G N EW
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSEL------IRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 130 ----CISVAVVHHGRPVIGVV---HASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLA 182
+S+ + P+IGV+ H + V T K + + ++ L
Sbjct: 227 DKDYLLSIPI---SCPLIGVIQLAH-------YVV------TA--KLLGFTPGELRSYLK 268
Query: 183 ---------IMASDVSLKGLDSYVRFRRQSSISSLCLRIL 213
+ A ++ DS+ F + +L
Sbjct: 269 GATGHSQGLVTAVAIA--ETDSWESFFVS---VRKAITVL 303
Score = 38.0 bits (88), Expect = 0.003
Identities = 56/304 (18%), Positives = 87/304 (28%), Gaps = 123/304 (40%)
Query: 38 VRSAVQGASTVAMQYFLRSPNVWWKHEGSSP--VCDADIAVNDYLESFLRPLRPAY---- 91
+RS ++GA+ G S V IA D ESF +R A
Sbjct: 263 LRSYLKGAT------------------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 92 --GWLSEETDDDLQRLNYETLF-----VVDPIDGTRAFIEGRNEWCISV------AVVHH 138
G E Y + D ++ EG +S+ V +
Sbjct: 305 FIGVRCYEA--------YPNTSLPPSILEDSLENN----EGVPSPMLSISNLTQEQVQDY 352
Query: 139 GRPVIGVVHASALGKEFFVSVGMKSTCNG-KNISVSSNQMSDSLAIMASDVSLKGLDSYV 197
+ ++ L V + S NG KN+ VS S L GL+ +
Sbjct: 353 ----VNKTNSH-LPAGKQVEI---SLVNGAKNLVVSGPPQS-----------LYGLNLTL 393
Query: 198 R--------------FR-RQSSISSLCLRILMIAS--------GEVDVLIVDRNANDWDL 234
R F R+ S+ R L +AS D++ D N+
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSN---RFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 235 AAADLL-----------LECSGGALVDIDRKLLTYNRSQVNHEVLFASAKW----HFPSF 279
A D+ L G++ + + R V W F +
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII--RLPVK---------WETTTQFKA- 498
Query: 280 KQHL 283
H+
Sbjct: 499 -THI 501
>1keh_A Precursor of cephalosporin acylase; glutaryl-7-ACA, hydrolase;
2.50A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB:
1oqz_A
Length = 689
Score = 26.7 bits (58), Expect = 6.0
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 18/124 (14%)
Query: 39 RSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIA---------VNDYLESFLRPLRP 89
+ G +L + V + + D +N Y + + P
Sbjct: 65 GAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISP 124
Query: 90 AYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIE---------GRNEWCISVAVVHHGR 140
+ + D+ + + + R E G N W ++ +G
Sbjct: 125 EVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPPDLADQGANSWAVAPGKTANGN 184
Query: 141 PVIG 144
++
Sbjct: 185 ALLL 188
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.7 bits (58), Expect = 6.2
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 88 RPAYGWLSEET----DDDLQRLNYET 109
RP GW+ +T DD + YET
Sbjct: 871 RPYTGWVDSKTKEPVDDKDVKAKYET 896
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,532,483
Number of extensions: 112696
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 25
Length of query: 286
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 195
Effective length of database: 3,487,026
Effective search space: 679970070
Effective search space used: 679970070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.8 bits)