HHsearch alignment for GI: 254780405 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=98.55  E-value=5.2e-08  Score=68.40  Aligned_cols=101  Identities=15%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r   48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP  127 (189)
Q Consensus        48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP  127 (189)
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~-~l~~~~~vVaNlP  104 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP-SLAQPYKVVANLP  104 (259)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHC---CCCCEEEEECCHHCCCCH-HHCCCCEEEECCC
T ss_conf             998699978987788999996069-57999968899999997506---566559994724247513-5157888998089


Q ss_pred             HHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             3100028889888744888897499998
Q gi|254780405|r  128 YGQGLAQQALAIIDKEGWLEPNALVIIE  155 (189)
Q Consensus       128 Y~~~~~~~~l~~l~~~~~L~~~gliiiE  155 (189)
T Consensus       105 Y--~Isspii~kll~~~~~~~~~v~M~Q  130 (259)
T COG0030         105 Y--NISSPILFKLLEEKFIIQDMVLMVQ  130 (259)
T ss_pred             C--CCCHHHHHHHHHCCCCCCEEEEEEH
T ss_conf             7--6567999999846676542899829