HHsearch alignment for GI: 254780405 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=98.55 E-value=5.2e-08 Score=68.40 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=74.4
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~-~l~~~~~vVaNlP 104 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP-SLAQPYKVVANLP 104 (259)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHC---CCCCEEEEECCHHCCCCH-HHCCCCEEEECCC
T ss_conf 998699978987788999996069-57999968899999997506---566559994724247513-5157888998089
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 3100028889888744888897499998
Q gi|254780405|r 128 YGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
T Consensus 105 Y--~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 105 Y--NISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred C--CCCHHHHHHHHHCCCCCCEEEEEEH
T ss_conf 7--6567999999846676542899829