HHsearch alignment for GI: 254780405 and conserved domain: COG0270
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair].
Probab=97.84 E-value=8.8e-06 Score=55.18 Aligned_cols=98 Identities=17% Similarity=0.339 Sum_probs=66.8
Q ss_pred CCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCHH
Q ss_conf 967861100122210011016873301110001235667642001332210022344566542100344-4431015134
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNIS-PFQLVYLDPP 127 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~-~fDiIf~DPP 127 (189)
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCHHHHHHHHCHHHCCCCCCCEEEECCC
T ss_conf 854998658756588999864984899874698899999985888------74203037660522235567637985899
Q ss_pred HH---------------HCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 31---------------000288898887448888974999981
Q gi|254780405|r 128 YG---------------QGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 128 Y~---------------~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~---~~P-~~fv~EN 116 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQ---LRP-KFFVLEN 116 (328)
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHH---HCC-CEEEEEC
T ss_conf 721334077667767334769999999996---389-8799966