HHsearch alignment for GI: 254780405 and conserved domain: COG0742
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=378.52 Aligned_cols=183 Identities=39% Similarity=0.773 Sum_probs=167.1
Q ss_pred CEEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHH
Q ss_conf 01998641088674437888867785899999998776333645589678611001222100110168733011100012
Q gi|254780405|r 3 KIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSE 82 (189)
Q Consensus 3 ~mrii~G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~ 82 (189)
T Consensus 1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~---~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~ 77 (187)
T COG0742 1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPD---EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK 77 (187)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC---CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
T ss_conf 9399802406977257999986887168889999873434---4579889994687647689998578856999965989
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHCCHHHHHHHHH--HCCCCCCCEEEEEECCCC
Q ss_conf 35667642001332210022344566542100344-443101513431000288898887--448888974999981778
Q gi|254780405|r 83 SIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNIS-PFQLVYLDPPYGQGLAQQALAIID--KEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 83 a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~-~fDiIf~DPPY~~~~~~~~l~~l~--~~~~L~~~gliiiE~~~~ 159 (189)
T Consensus 78 a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 78 AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 99999999998487612599840089998722778851289968997536066899998887658778896899982787
Q ss_pred CCC-CCCCCCEEEEEEECCCEEEEEEECCC
Q ss_conf 886-75788579998341856999865078
Q gi|254780405|r 160 TCI-SVGAAFHFLQERKYGDTKIYFFSYNP 188 (189)
Q Consensus 160 ~~~-~~~~~~~~~~~k~yG~t~i~f~~~np 188 (189)
T Consensus 158 ~~~~~~~~~~~~~r~k~yG~t~l~~y~~~~ 187 (187)
T COG0742 158 VELPELPANFELHREKKYGQTKLTFYRREE 187 (187)
T ss_pred CCCCCCCCCEEEEEEEECCCEEEEEEEECC
T ss_conf 775656787389987244977999999459