HHsearch alignment for GI: 254780405 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=99.40 E-value=2.8e-12 Score=93.73 Aligned_cols=155 Identities=23% Similarity=0.309 Sum_probs=102.7
Q ss_pred CCCCCCH--HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8867785--89999999877633364558967861100122210011016873301110001235667642001332210
Q gi|254780405|r 22 RSIRPSD--SRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 22 ~~~RPt~--~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~-----v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-~ 246 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLAR-----VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-D 246 (347)
T ss_pred CCCCCCCCCHHHHHHHHHHHC-----CCCCCEEECCCCCCCHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHHHHCCC-C
T ss_conf 856768859899999877741-----64698764576783488883664275-6760323799985566415662767-6
Q ss_pred HHHHHH-HHHHHHHHCCCCCCCCCCCCHHHHH----------CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC-CCCC
Q ss_conf 022344-5665421003444431015134310----------002888988874488889749999817788867-5788
Q gi|254780405|r 100 CNIFFR-DVLRLGKIGNISPFQLVYLDPPYGQ----------GLAQQALAIIDKEGWLEPNALVIIEEYAGTCIS-VGAA 167 (189)
Q Consensus 100 ~~ii~~-D~~~~~~~~~~~~fDiIf~DPPY~~----------~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~-~~~~ 167 (189)
T Consensus 247 ~~~~~~~Da~~lp--l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~--evLk~gG~~vf~~p~~~~~~~~~~~ 322 (347)
T COG1041 247 YPVLKVLDATNLP--LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESAS--EVLKPGGRIVFAAPRDPRHELEELG 322 (347)
T ss_pred EEEEEECCCCCCC--CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHCCCEEEEECCCCCHHHHHHCC
T ss_conf 1688730221277--88774235884699871002455528999999999999--8730484899961786055676439
Q ss_pred CEEE---EEEECCCEEEEEEECC
Q ss_conf 5799---9834185699986507
Q gi|254780405|r 168 FHFL---QERKYGDTKIYFFSYN 187 (189)
Q Consensus 168 ~~~~---~~k~yG~t~i~f~~~n 187 (189)
T Consensus 323 f~v~~~~~~~~H~sLtR~i~v~~ 345 (347)
T COG1041 323 FKVLGRFTMRVHGSLTRVIYVVR 345 (347)
T ss_pred CEEEEEEEEEECCCEEEEEEEEE
T ss_conf 65999997764174689999986