HHsearch alignment for GI: 254780405 and conserved domain: COG1743
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair].
Probab=96.68 E-value=0.0007 Score=43.89 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=43.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5589678611001222100110168733011100012356676420013
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELL 94 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~ 94 (189)
T Consensus 88 ~~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 88 PFEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCC-EEEEEECCCHHHHHHHHHHHCC
T ss_conf 45687402665689866358886476-3689731608999999997214