HHsearch alignment for GI: 254780405 and conserved domain: COG1867
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=98.63 E-value=2.2e-08 Score=70.61 Aligned_cols=140 Identities=20% Similarity=0.328 Sum_probs=89.4
Q ss_pred CCCEEEEEEEECCEEEECCCCCC---------CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHH-HCCC
Q ss_conf 97019986410886744378888---------6778589999999877633364558967861100122210011-0168
Q gi|254780405|r 1 MNKIRIIGGKFQRRLLHTPQNRS---------IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEA-LSRG 70 (189)
Q Consensus 1 ~~~mrii~G~~kg~~l~~~~~~~---------~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEa-lSrG 70 (189)
T Consensus 1 ~~~~~v~EG~---~~i~vP~~~~~~~~~~pVFYNP~m~~NRDlsV~~l~~-~~-~~~~~~v~DalsatGiRgIRya~E~~ 75 (380)
T COG1867 1 MELMEVKEGS---AKIYVPDPYKGGSKRAPVFYNPAMEFNRDLSVLVLKA-FG-KLLPKRVLDALSATGIRGIRYAVETG 75 (380)
T ss_pred CCEEEEECCC---EEEECCCCCCCCCCCCCCEECCHHHHCCCHHHHHHHH-HH-CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9237853372---5797078777888778602280466364266899998-60-34773886435553366754534257
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH--CCHHHHHHHHHHCCCCCC
Q ss_conf 733011100012356676420013322100223445665421003444431015134310--002888988874488889
Q gi|254780405|r 71 CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ--GLAQQALAIIDKEGWLEP 148 (189)
Q Consensus 71 A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~--~~~~~~l~~l~~~~~L~~ 148 (189)
T Consensus 76 ~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~-~~fd~IDiDP-FGSPaPFlDaA~~s------~~~ 146 (380)
T COG1867 76 VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELH-RAFDVIDIDP-FGSPAPFLDAALRS------VRR 146 (380)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCC-CCEEECCHHHHHHHHCC-CCCCEEECCC-CCCCCHHHHHHHHH------HHC
T ss_conf 617997158989999999999834766-63255342899987258-8763781389-99972679999997------222
Q ss_pred CEEEEE
Q ss_conf 749999
Q gi|254780405|r 149 NALVII 154 (189)
Q Consensus 149 ~gliii 154 (189)
T Consensus 147 ~G~l~v 152 (380)
T COG1867 147 GGLLCV 152 (380)
T ss_pred CCEEEE
T ss_conf 988999