HHsearch alignment for GI: 254780405 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=99.59 E-value=5.2e-16 Score=115.86 Aligned_cols=98 Identities=26% Similarity=0.373 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 67785899999998776333645589678611001222100110168733011100012356676420013322100223
Q gi|254780405|r 24 IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 24 ~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
T Consensus 24 Y~Tp~~~Aa~il~~a~---~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~ 98 (198)
T COG2263 24 YRTPAPLAAYILWVAY---LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFV 98 (198)
T ss_pred CCCCHHHHHHHHHHHH---HCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--HCCCEEEE
T ss_conf 4798489999999998---738847888888278847889999862971799993698999999988886--08846999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHC
Q ss_conf 4456654210034444310151343100
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPPYGQG 131 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPPY~~~ 131 (189)
T Consensus 99 ~~dv~~~~-----~~~dtvimNPPFG~~ 121 (198)
T COG2263 99 VADVSDFR-----GKFDTVIMNPPFGSQ 121 (198)
T ss_pred ECCHHHCC-----CCCCEEEECCCCCCC
T ss_conf 82101147-----766669978997322