HHsearch alignment for GI: 254780405 and conserved domain: COG2263

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=99.59  E-value=5.2e-16  Score=115.86  Aligned_cols=98  Identities=26%  Similarity=0.373  Sum_probs=80.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             67785899999998776333645589678611001222100110168733011100012356676420013322100223
Q gi|254780405|r   24 IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF  103 (189)
Q Consensus        24 ~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii  103 (189)
T Consensus        24 Y~Tp~~~Aa~il~~a~---~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~   98 (198)
T COG2263          24 YRTPAPLAAYILWVAY---LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFV   98 (198)
T ss_pred             CCCCHHHHHHHHHHHH---HCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--HCCCEEEE
T ss_conf             4798489999999998---738847888888278847889999862971799993698999999988886--08846999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHC
Q ss_conf             4456654210034444310151343100
Q gi|254780405|r  104 FRDVLRLGKIGNISPFQLVYLDPPYGQG  131 (189)
Q Consensus       104 ~~D~~~~~~~~~~~~fDiIf~DPPY~~~  131 (189)
T Consensus        99 ~~dv~~~~-----~~~dtvimNPPFG~~  121 (198)
T COG2263          99 VADVSDFR-----GKFDTVIMNPPFGSQ  121 (198)
T ss_pred             ECCHHHCC-----CCCCEEEECCCCCCC
T ss_conf             82101147-----766669978997322