HHsearch alignment for GI: 254780405 and conserved domain: COG2264
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=99.56 E-value=5.3e-15 Score=109.85 Aligned_cols=139 Identities=20% Similarity=0.282 Sum_probs=97.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 88867785899999998776333645589678611001222100110168733011100012356676420013322100
Q gi|254780405|r 21 NRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 21 ~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
T Consensus 142 GTG~HpTT~lcL~~Le~~~-------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~ 214 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLL-------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV 214 (300)
T ss_pred CCCCCHHHHHHHHHHHHHH-------CCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 7887801799999999860-------589879982678159999999819866899718889999999999976996022
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEEE----CCCCCCCC--CCCCCEEEE
Q ss_conf 223445665421003444431015134310002888988874--4888897499998----17788867--578857999
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVIIE----EYAGTCIS--VGAAFHFLQ 172 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliiiE----~~~~~~~~--~~~~~~~~~ 172 (189)
T Consensus 215 ~~~~~~~---~~~~~~~~~DvIVAN------ILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 215 QAKGFLL---LEVPENGPFDVIVAN------ILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVE 285 (300)
T ss_pred HCCCCCC---HHHCCCCCCCEEEEH------HHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEE
T ss_conf 0034563---000136865689860------5278999999999987088936999862075899999999858976868
Q ss_pred EEE
Q ss_conf 834
Q gi|254780405|r 173 ERK 175 (189)
Q Consensus 173 ~k~ 175 (189)
T Consensus 286 ~~~ 288 (300)
T COG2264 286 VLE 288 (300)
T ss_pred EEE
T ss_conf 970