HHsearch alignment for GI: 254780405 and conserved domain: COG2961
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only].
Probab=97.26 E-value=0.00014 Score=48.04 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=68.4
Q ss_pred EEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCHHHH
Q ss_conf 86110012221001101687330111000123566764200133221002234456654210--0344443101513431
Q gi|254780405|r 52 MLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI--GNISPFQLVYLDPPYG 129 (189)
Q Consensus 52 vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~--~~~~~fDiIf~DPPY~ 129 (189)
T Consensus 92 ~l~~YpGSP~lA~-~llR~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE 167 (279)
T COG2961 92 GLRYYPGSPLLAR-QLLREQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFE 167 (279)
T ss_pred CCCCCCCCHHHHH-HHCCHHCEEEEEECCCCHHHHHHHHHC---CCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 8045899989999-871401003320048457999997627---784147883471888862189977625899589866
Q ss_pred H-CCHHHHHHHHHHC
Q ss_conf 0-0028889888744
Q gi|254780405|r 130 Q-GLAQQALAIIDKE 143 (189)
Q Consensus 130 ~-~~~~~~l~~l~~~ 143 (189)
T Consensus 168 ~~~eY~rvv~~l~~~ 182 (279)
T COG2961 168 LKDEYQRVVEALAEA 182 (279)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 621799999999999