HHsearch alignment for GI: 254780405 and conserved domain: COG2961

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only].
Probab=97.26  E-value=0.00014  Score=48.04  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=68.4

Q ss_pred             EEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCHHHH
Q ss_conf             86110012221001101687330111000123566764200133221002234456654210--0344443101513431
Q gi|254780405|r   52 MLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI--GNISPFQLVYLDPPYG  129 (189)
Q Consensus        52 vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~--~~~~~fDiIf~DPPY~  129 (189)
T Consensus        92 ~l~~YpGSP~lA~-~llR~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE  167 (279)
T COG2961          92 GLRYYPGSPLLAR-QLLREQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFE  167 (279)
T ss_pred             CCCCCCCCHHHHH-HHCCHHCEEEEEECCCCHHHHHHHHHC---CCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf             8045899989999-871401003320048457999997627---784147883471888862189977625899589866


Q ss_pred             H-CCHHHHHHHHHHC
Q ss_conf             0-0028889888744
Q gi|254780405|r  130 Q-GLAQQALAIIDKE  143 (189)
Q Consensus       130 ~-~~~~~~l~~l~~~  143 (189)
T Consensus       168 ~~~eY~rvv~~l~~~  182 (279)
T COG2961         168 LKDEYQRVVEALAEA  182 (279)
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             621799999999999