HHsearch alignment for GI: 254780405 and conserved domain: COG5459
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=92.65 E-value=0.24 Score=28.84 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=58.7
Q ss_pred HHHHHHHHHC--CCCCCCCCEEEECCCCCCCCHHHHHC---CCCCCHHHHHHHHHHHHH---HHHHHCCCCCCCCHHHHH
Q ss_conf 9999877633--36455896786110012221001101---687330111000123566---764200133221002234
Q gi|254780405|r 33 KALFDILTHV--YPVFLDSTRMLNIFAGTGSVGFEALS---RGCHYVLFVDNNSESIRL---IRRNSELLGVEKNCNIFF 104 (189)
Q Consensus 33 ealFniL~~~--~~~~~~~~~vlDlfaGsG~lgiEalS---rGA~~v~~vE~~~~a~~~---lk~N~~~~~~~~~~~ii~ 104 (189)
T Consensus 96 asv~asL~~L~~~~~dfapqsiLDvG~GPgt-gl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 96 ASVRASLDELQKRVPDFAPQSILDVGAGPGT-GLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCH-HHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9999999999974888686102003778752-123320337880221234048999999999986045334777788650
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CHHHHHCC---HHHHHHHHHHCCCCCCCEEE-EEECCC
Q ss_conf 45665421003444431015-13431000---28889888744888897499-998177
Q gi|254780405|r 105 RDVLRLGKIGNISPFQLVYL-DPPYGQGL---AQQALAIIDKEGWLEPNALV-IIEEYA 158 (189)
Q Consensus 105 ~D~~~~~~~~~~~~fDiIf~-DPPY~~~~---~~~~l~~l~~~~~L~~~gli-iiE~~~ 158 (189)
T Consensus 175 ~d---Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw--~l~~~gg~lVivErGt 228 (484)
T COG5459 175 ED---RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLW--NLLAPGGHLVIVERGT 228 (484)
T ss_pred HH---CCCCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHH--HHCCCCCEEEEEECCC
T ss_conf 21---047883223633343544443557431889999999--8606897499971798