HHsearch alignment for GI: 254780405 and conserved domain: PRK04266
>PRK04266 fibrillarin; Provisional.
Probab=95.45 E-value=0.024 Score=34.80 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 778589999999877633364558967861100122210011016--873301110001235667642001332210022
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
T Consensus 51 ~P~RSKLaAail~g~~~-~~-i~~gskVLYLGAasGT-TVSHvsDiV~~G~VyAVE~spr~~RdL~~la~---~R~NivP 124 (226)
T PRK04266 51 NPRRSKLAAAILNGLKN-FP-IKKGSKVLYLGAASGT-TVSHVSDIVEEGRVYAVEFAPRVMRELLLVAE---ERKNIIP 124 (226)
T ss_pred CCCCCHHHHHHHCCCCC-CC-CCCCCEEEEECCCCCC-CHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH---HCCCCEE
T ss_conf 88721999999769755-67-5899879995477798-48889875179649999827077899999985---0899625
Q ss_pred HHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 34456654210-03444431015134310002888988874488889749999
Q gi|254780405|r 103 FFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 103 i~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
T Consensus 125 Il~DAr~P~~Y~~~v~~VD~i~qDvAQ-~dQa~I~~~--Na~~FLk~gG~~~l 174 (226)
T PRK04266 125 ILGDARKPEEYAHLVEKVDVIYQDVAQ-PNQAEIAAD--NADIFLKPGGYLML 174 (226)
T ss_pred EECCCCCHHHHHHHCCCCCEEEEECCC-HHHHHHHHH--HHHHHHHCCCEEEE
T ss_conf 754678845644205656589960677-428999999--99986015988999