HHsearch alignment for GI: 254780405 and conserved domain: PRK05031
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=99.61 E-value=6e-16 Score=115.47 Aligned_cols=105 Identities=22% Similarity=0.401 Sum_probs=84.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC------------
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003------------
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGN------------ 115 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~------------ 115 (189)
T Consensus 207 ~~~~vlDLYcG~Gtfsl-~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~-N~~fi~~~a~~~~~~~~~~~~~~~l~~~~ 284 (363)
T PRK05031 207 SKGDLLELYCGNGNFTL-ALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFRRLKGID 284 (363)
T ss_pred CCCCEEEEECCCCHHHH-HHHHHCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCHHHCCCCCC
T ss_conf 89828986058664269-98862687999953899999999999986998-64999658999999873431010012466
Q ss_pred --CCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf --444431015134310002888988874488889749999817788
Q gi|254780405|r 116 --ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 116 --~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
T Consensus 285 ~~~~~~d~vvvDPP-R~Gl~~~~~~~i~~---~--~rIVYVSCnP~T 325 (363)
T PRK05031 285 LKSYNFSTIFVDPP-RAGLDEETLKLVQN---Y--ERILYISCNPET 325 (363)
T ss_pred CCCCCCCEEEECCC-CCCCCHHHHHHHHC---C--CEEEEEECCHHH
T ss_conf 44355864898999-88874999999836---8--909999289899