HHsearch alignment for GI: 254780405 and conserved domain: PRK05031

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=99.61  E-value=6e-16  Score=115.47  Aligned_cols=105  Identities=22%  Similarity=0.401  Sum_probs=84.3

Q ss_pred             CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC------------
Q ss_conf             89678611001222100110168733011100012356676420013322100223445665421003------------
Q gi|254780405|r   48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGN------------  115 (189)
Q Consensus        48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~------------  115 (189)
T Consensus       207 ~~~~vlDLYcG~Gtfsl-~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~-N~~fi~~~a~~~~~~~~~~~~~~~l~~~~  284 (363)
T PRK05031        207 SKGDLLELYCGNGNFTL-ALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFRRLKGID  284 (363)
T ss_pred             CCCCEEEEECCCCHHHH-HHHHHCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCHHHCCCCCC
T ss_conf             89828986058664269-98862687999953899999999999986998-64999658999999873431010012466


Q ss_pred             --CCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf             --444431015134310002888988874488889749999817788
Q gi|254780405|r  116 --ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT  160 (189)
Q Consensus       116 --~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~  160 (189)
T Consensus       285 ~~~~~~d~vvvDPP-R~Gl~~~~~~~i~~---~--~rIVYVSCnP~T  325 (363)
T PRK05031        285 LKSYNFSTIFVDPP-RAGLDEETLKLVQN---Y--ERILYISCNPET  325 (363)
T ss_pred             CCCCCCCEEEECCC-CCCCCHHHHHHHHC---C--CEEEEEECCHHH
T ss_conf             44355864898999-88874999999836---8--909999289899