HHsearch alignment for GI: 254780405 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=100.00 E-value=0 Score=393.51 Aligned_cols=180 Identities=27% Similarity=0.542 Sum_probs=169.2
Q ss_pred CCEEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 70199864108867443788886778589999999877633364558967861100122210011016873301110001
Q gi|254780405|r 2 NKIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 2 ~~mrii~G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~ 81 (189)
T Consensus 10 ~~mRIIsG~~kGr~L~~p~~~~~RPT~drvREalFn~L~~----~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~ 85 (198)
T PRK10909 10 GQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAP----VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDR 85 (198)
T ss_pred CCEEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCH
T ss_conf 7779972156897836899999687838899999987576----429987998277746889999987997899997899
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 23566764200133221002234456654210034444310151343100028889888744888897499998177888
Q gi|254780405|r 82 ESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 82 ~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~ 161 (189)
T Consensus 86 ~~~~~i~~N~~~l~~-~~~~ii~~da~~~L~~~-~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~ 163 (198)
T PRK10909 86 AVSQQLIKNLATLKA-GNARVVNTNALSFLAQP-GTPHNVVFVDPPFRKGLLEETINLLEQNGWLADDALIYVESEVENG 163 (198)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 999999999998488-86799955699986255-9952189989997655599999999988891899699999548888
Q ss_pred C-CCCCCCEEEEEEECCCEEEEEEECC
Q ss_conf 6-7578857999834185699986507
Q gi|254780405|r 162 I-SVGAAFHFLQERKYGDTKIYFFSYN 187 (189)
Q Consensus 162 ~-~~~~~~~~~~~k~yG~t~i~f~~~n 187 (189)
T Consensus 164 l~~~~~~~~l~kek~yG~t~~~lY~~~ 190 (198)
T PRK10909 164 LPTVPANWSLHREKVAGQVAYRLYQRE 190 (198)
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 777898859999703086999999987