HHsearch alignment for GI: 254780405 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.69 E-value=3.3e-09 Score=75.52 Aligned_cols=105 Identities=28% Similarity=0.364 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHH--HHCCCCCC-C-CCEEEECCCCCCCCHHHHHC----------CC---C-------------------
Q ss_conf 589999999877--63336455-8-96786110012221001101----------68---7-------------------
Q gi|254780405|r 28 DSRTKKALFDIL--THVYPVFL-D-STRMLNIFAGTGSVGFEALS----------RG---C------------------- 71 (189)
Q Consensus 28 ~~~vrealFniL--~~~~~~~~-~-~~~vlDlfaGsG~lgiEalS----------rG---A------------------- 71 (189)
T Consensus 170 ~APLKEnLAAalL~~sgW~~~~~~~~~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~ 249 (716)
T PRK11783 170 EAPLKENLAAAILLRSGWPEIAAQGGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQ 249 (716)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
T ss_conf 78876699999999749963345799813446668437899999998477988654545641156889999999999999
Q ss_pred -----------CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
Q ss_conf -----------3301110001235667642001332210022344566542100344443101513431000
Q gi|254780405|r 72 -----------HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL 132 (189)
Q Consensus 72 -----------~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~ 132 (189)
T Consensus 250 ~r~~~~~~~~~~~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERL 321 (716)
T PRK11783 250 ERARAGLAECSPKFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL 321 (716)
T ss_pred HHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCC
T ss_conf 865422346887189995998999999999998199886299956789857987778982899678522013