HHsearch alignment for GI: 254780405 and conserved domain: PRK11783

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.69  E-value=3.3e-09  Score=75.52  Aligned_cols=105  Identities=28%  Similarity=0.364  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHH--HHCCCCCC-C-CCEEEECCCCCCCCHHHHHC----------CC---C-------------------
Q ss_conf             589999999877--63336455-8-96786110012221001101----------68---7-------------------
Q gi|254780405|r   28 DSRTKKALFDIL--THVYPVFL-D-STRMLNIFAGTGSVGFEALS----------RG---C-------------------   71 (189)
Q Consensus        28 ~~~vrealFniL--~~~~~~~~-~-~~~vlDlfaGsG~lgiEalS----------rG---A-------------------   71 (189)
T Consensus       170 ~APLKEnLAAalL~~sgW~~~~~~~~~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~  249 (716)
T PRK11783        170 EAPLKENLAAAILLRSGWPEIAAQGGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQ  249 (716)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
T ss_conf             78876699999999749963345799813446668437899999998477988654545641156889999999999999


Q ss_pred             -----------CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
Q ss_conf             -----------3301110001235667642001332210022344566542100344443101513431000
Q gi|254780405|r   72 -----------HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL  132 (189)
Q Consensus        72 -----------~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~  132 (189)
T Consensus       250 ~r~~~~~~~~~~~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERL  321 (716)
T PRK11783        250 ERARAGLAECSPKFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL  321 (716)
T ss_pred             HHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCC
T ss_conf             865422346887189995998999999999998199886299956789857987778982899678522013