HHsearch alignment for GI: 254780405 and conserved domain: TIGR00080
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.59 E-value=2.4e-05 Score=52.53 Aligned_cols=106 Identities=15% Similarity=0.275 Sum_probs=75.3
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHHH
Q ss_conf 99877633364558967861100122210011016873---301110001235667642001-----3322100223445
Q gi|254780405|r 35 LFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCH---YVLFVDNNSESIRLIRRNSEL-----LGVEKNCNIFFRD 106 (189)
Q Consensus 35 lFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~---~v~~vE~~~~a~~~lk~N~~~-----~~~~~~~~ii~~D 106 (189)
T Consensus 72 m~~yL~nhL---~~~~~vLeiG~GSGY~aa-vlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~-~NV~v~~GD 146 (228)
T TIGR00080 72 MTEYLENHL---KPGAKVLEIGTGSGYQAA-VLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGL-DNVIVIEGD 146 (228)
T ss_pred HHHHHHHHC---CCCCEEEEECCCCHHHHH-HHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 999888521---403556650478558999-999987139718998535788999998765431444068-865899778
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 665421003444431015134310002888988874488889749999
Q gi|254780405|r 107 VLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 107 ~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
T Consensus 147 G~~--G~~~~APYd~I~~~AA-~k~iP~AL~~QL------~eGG~L~~ 185 (228)
T TIGR00080 147 GRQ--GWEEKAPYDAILVTAA-AKEIPKALIDQL------EEGGILVL 185 (228)
T ss_pred CCC--CHHHCCCCCEEEEECC-CCCCCHHHHHHH------HHCCEEEE
T ss_conf 865--7102488352775237-898765789999------72898862